mm39_v1_chr5_+_75735576_75735663	0.10954562738713117	UAUUGCU	ENSMUST00000144270.8|Kit|ENSMUSG00000005672.13|KIT proto-oncogene receptor tyrosine kinase	ENSMUST00000005815.7|Kit|ENSMUSG00000005672.13|KIT proto-oncogene receptor tyrosine kinase
mm39_v1_chr3_-_122413361_122413372	0.09167838997288895	UAUUGCU	ENSMUST00000239148.2|Fnbp1l|ENSMUSG00000039735.17|formin binding protein 1-like	ENSMUST00000162409.8|Fnbp1l|ENSMUSG00000039735.17|formin binding protein 1-like	ENSMUST00000162947.3|Fnbp1l|ENSMUSG00000039735.17|formin binding protein 1-like
mm39_v1_chr12_-_46865709_46865720	0.09033148233983739	UAUUGCU	ENSMUST00000021438.8|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr11_-_115918784_115918826	0.0899597553836759	UAUUGCU	ENSMUST00000106454.8|H3f3b|ENSMUSG00000016559.15|H3.3 histone B
mm39_v1_chr13_+_9326513_9326657	0.08428203428411175	UAUUGCU	ENSMUST00000174552.8|Dip2c|ENSMUSG00000048264.17|disco interacting protein 2 homolog C
mm39_v1_chr3_-_101017594_101017652	0.0783137182108253	UAUUGCU	ENSMUST00000102694.4|Ptgfrn|ENSMUSG00000027864.10|prostaglandin F2 receptor negative regulator
mm39_v1_chr12_-_98867431_98867534	0.07454328426452	UAUUGCU	ENSMUST00000065716.8|Eml5|ENSMUSG00000051166.11|echinoderm microtubule associated protein like 5
mm39_v1_chr3_-_58433313_58433318	0.07358692830963678	UAUUGCU	ENSMUST00000029385.9|Serp1|ENSMUSG00000027808.9|stress-associated endoplasmic reticulum protein 1
mm39_v1_chr13_-_104057016_104057075	0.06914696366762922	UAUUGCU	ENSMUST00000022222.12|Erbin|ENSMUSG00000021709.15|Erbb2 interacting protein
mm39_v1_chr12_-_14202041_14202070	0.0679515212976028	UAUUGCU	ENSMUST00000020926.8|Lratd1|ENSMUSG00000020607.8|LRAT domain containing 1
mm39_v1_chr17_-_26727437_26727493	0.06743781774974514	UAUUGCU	ENSMUST00000236661.2|Dusp1|ENSMUSG00000024190.8|dual specificity phosphatase 1	ENSMUST00000025025.7|Dusp1|ENSMUSG00000024190.8|dual specificity phosphatase 1
mm39_v1_chr13_-_52685305_52685321	0.06234269290920036	UAUUGCU	ENSMUST00000057442.8|Diras2|ENSMUSG00000047842.8|DIRAS family, GTP-binding RAS-like 2
mm39_v1_chr1_+_134487928_134487971	0.061302269226944456	UAUUGCU	ENSMUST00000112198.3|Kdm5b|ENSMUSG00000042207.18|lysine (K)-specific demethylase 5B
mm39_v1_chr4_-_154721288_154721330	0.0600744195791718	UAUUGCU	ENSMUST00000030902.13|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105637.8|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000070313.14|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105636.8|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105638.9|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000097759.9|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000124771.2|Prdm16|ENSMUSG00000039410.17|PR domain containing 16
mm39_v1_chr8_+_73072877_73072915	0.05822786698345759	UAUUGCU	ENSMUST00000067912.8|Klf2|ENSMUSG00000055148.8|Kruppel-like factor 2 (lung)
mm39_v1_chr4_+_129030710_129030792	0.057362205319579467	UAUUGCU	ENSMUST00000102600.4|Fndc5|ENSMUSG00000001334.10|fibronectin type III domain containing 5
mm39_v1_chr1_-_16689660_16689713	0.054669117837204885	UAUUGCU	ENSMUST00000117146.9|Ube2w|ENSMUSG00000025939.20|ubiquitin-conjugating enzyme E2W (putative)
mm39_v1_chr5_+_138740214_138740277	0.05403491765921975	UAUUGCU	ENSMUST00000026972.8|Fam20c|ENSMUSG00000025854.16|FAM20C, golgi associated secretory pathway kinase
mm39_v1_chr9_+_118755521_118755636	0.052342057287108515	UAUUGCU	ENSMUST00000073109.12|Ctdspl|ENSMUSG00000047409.14|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like
mm39_v1_chrX_+_35592006_35592071	0.05206782670011118	UAUUGCU	ENSMUST00000016383.10|Lonrf3|ENSMUSG00000016239.12|LON peptidase N-terminal domain and ring finger 3
mm39_v1_chr11_-_4897991_4898064	0.05078750615654737	UAUUGCU	ENSMUST00000093369.5|Nefh|ENSMUSG00000020396.9|neurofilament, heavy polypeptide
mm39_v1_chr11_-_51748450_51748511	0.04892147227937333	UAUUGCU	ENSMUST00000020655.14|Jade2|ENSMUSG00000020387.16|jade family PHD finger 2	ENSMUST00000109090.8|Jade2|ENSMUSG00000020387.16|jade family PHD finger 2
mm39_v1_chr16_-_78373510_78373535	0.04710516681796645	UAUUGCU	ENSMUST00000231973.2|D16Ertd472e|ENSMUSG00000022864.15|DNA segment, Chr 16, ERATO Doi 472, expressed	ENSMUST00000232528.2|D16Ertd472e|ENSMUSG00000022864.15|DNA segment, Chr 16, ERATO Doi 472, expressed	ENSMUST00000114220.9|D16Ertd472e|ENSMUSG00000022864.15|DNA segment, Chr 16, ERATO Doi 472, expressed
mm39_v1_chrX_-_11946785_11946800	0.045437174531599386	UAUUGCU	ENSMUST00000115513.9|Bcor|ENSMUSG00000040363.16|BCL6 interacting corepressor	ENSMUST00000115512.9|Bcor|ENSMUSG00000040363.16|BCL6 interacting corepressor	ENSMUST00000065143.14|Bcor|ENSMUSG00000040363.16|BCL6 interacting corepressor	ENSMUST00000124033.8|Bcor|ENSMUSG00000040363.16|BCL6 interacting corepressor
mm39_v1_chr13_-_46118433_46118477	0.04528838747241747	UAUUGCU	ENSMUST00000167708.4|Atxn1|ENSMUSG00000046876.17|ataxin 1	ENSMUST00000091628.11|Atxn1|ENSMUSG00000046876.17|ataxin 1	ENSMUST00000180110.9|Atxn1|ENSMUSG00000046876.17|ataxin 1
mm39_v1_chr6_-_38853097_38853167	0.04521245380018717	UAUUGCU	ENSMUST00000161779.8|Hipk2|ENSMUSG00000061436.16|homeodomain interacting protein kinase 2
mm39_v1_chr4_+_42949814_42949924	0.04310999464042551	UAUUGCU	ENSMUST00000037872.10|Dnajb5|ENSMUSG00000036052.15|DnaJ heat shock protein family (Hsp40) member B5	ENSMUST00000098112.9|Dnajb5|ENSMUSG00000036052.15|DnaJ heat shock protein family (Hsp40) member B5
mm39_v1_chr4_-_119151717_119151801	0.042854312293150267	UAUUGCU	ENSMUST00000079644.13|Ybx1|ENSMUSG00000028639.15|Y box protein 1
mm39_v1_chr19_-_6969845_6969893	0.04235630373649665	UAUUGCU	ENSMUST00000025915.13|Dnajc4|ENSMUSG00000024963.13|DnaJ heat shock protein family (Hsp40) member C4
mm39_v1_chr8_-_11058458_11058458	0.041603887266435	UAUUGCU	ENSMUST00000040514.8|Irs2|ENSMUSG00000038894.8|insulin receptor substrate 2
mm39_v1_chr3_+_146110387_146110487	0.0415301715161174	UAUUGCU	ENSMUST00000106151.8|Ssx2ip|ENSMUSG00000036825.13|synovial sarcoma, X 2 interacting protein	ENSMUST00000106153.9|Ssx2ip|ENSMUSG00000036825.13|synovial sarcoma, X 2 interacting protein	ENSMUST00000039021.11|Ssx2ip|ENSMUSG00000036825.13|synovial sarcoma, X 2 interacting protein	ENSMUST00000106149.8|Ssx2ip|ENSMUSG00000036825.13|synovial sarcoma, X 2 interacting protein	ENSMUST00000149262.8|Ssx2ip|ENSMUSG00000036825.13|synovial sarcoma, X 2 interacting protein
mm39_v1_chr5_+_32616187_32616312	0.041342288140265214	UAUUGCU	ENSMUST00000015100.15|Ppp1cb|ENSMUSG00000014956.16|protein phosphatase 1 catalytic subunit beta
mm39_v1_chr9_+_68561042_68561068	0.04102704358059833	UAUUGCU	ENSMUST00000034766.14|Rora|ENSMUSG00000032238.18|RAR-related orphan receptor alpha
mm39_v1_chr4_+_28813125_28813139	0.04033328620916942	UAUUGCU	ENSMUST00000080934.11|Epha7|ENSMUSG00000028289.13|Eph receptor A7	ENSMUST00000029964.12|Epha7|ENSMUSG00000028289.13|Eph receptor A7
mm39_v1_chr14_+_26359191_26359229	0.039961898118968525	UAUUGCU	ENSMUST00000022429.9|Arf4|ENSMUSG00000021877.13|ADP-ribosylation factor 4
mm39_v1_chr15_-_39807081_39807200	0.03951606838593196	UAUUGCU	ENSMUST00000022916.13|Lrp12|ENSMUSG00000022305.14|low density lipoprotein-related protein 12
mm39_v1_chr14_-_31139617_31139634	0.038362739219661504	UAUUGCU	ENSMUST00000100730.10|Sh3bp5|ENSMUSG00000021892.15|SH3-domain binding protein 5 (BTK-associated)
mm39_v1_chr3_-_131138541_131138589	0.03812571720853159	UAUUGCU	ENSMUST00000090246.5|Sgms2|ENSMUSG00000050931.8|sphingomyelin synthase 2	ENSMUST00000126569.2|Sgms2|ENSMUSG00000050931.8|sphingomyelin synthase 2
mm39_v1_chr17_-_50497682_50497702	0.037603754901473115	UAUUGCU	ENSMUST00000044503.14|Rftn1|ENSMUSG00000039316.15|raftlin lipid raft linker 1
mm39_v1_chr2_+_130748380_130748421	0.037537370586428	UAUUGCU	ENSMUST00000028781.9|Atrn|ENSMUSG00000027312.15|attractin
mm39_v1_chr6_-_128415640_128415661	0.03684841319407289	UAUUGCU	ENSMUST00000032508.11|Fkbp4|ENSMUSG00000030357.11|FK506 binding protein 4
mm39_v1_chr8_-_46605196_46605196	0.03576602767175129	UAUUGCU	ENSMUST00000110378.9|Snx25|ENSMUSG00000038291.17|sorting nexin 25
mm39_v1_chr14_-_4808744_4808823	0.034796408982076046	UAUUGCU	ENSMUST00000022303.17|Thrb|ENSMUSG00000021779.20|thyroid hormone receptor beta	ENSMUST00000091471.12|Thrb|ENSMUSG00000021779.20|thyroid hormone receptor beta
mm39_v1_chr9_-_115139489_115139516	0.03412442833826139	UAUUGCU	ENSMUST00000035010.10|Stt3b|ENSMUSG00000032437.11|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)
mm39_v1_chr1_-_131025562_131025581	0.034054268371284516	UAUUGCU	ENSMUST00000016672.11|Mapkapk2|ENSMUSG00000016528.11|MAP kinase-activated protein kinase 2
mm39_v1_chr6_-_99243455_99243501	0.03357189911337722	UAUUGCU	ENSMUST00000113326.9|Foxp1|ENSMUSG00000030067.18|forkhead box P1
mm39_v1_chr6_-_131365380_131365451	0.03331019385550691	UAUUGCU	ENSMUST00000032309.13|Ybx3|ENSMUSG00000030189.16|Y box protein 3	ENSMUST00000087865.4|Ybx3|ENSMUSG00000030189.16|Y box protein 3
mm39_v1_chr8_+_95584078_95584123	0.033229682434730214	UAUUGCU	ENSMUST00000109521.4|Polr2c|ENSMUSG00000031783.11|polymerase (RNA) II (DNA directed) polypeptide C
mm39_v1_chr5_+_115567644_115567673	0.033194028731250165	UAUUGCU	ENSMUST00000150779.8|Msi1|ENSMUSG00000054256.12|musashi RNA-binding protein 1
mm39_v1_chr9_+_72714156_72714156	0.032814602598910635	UAUUGCU	ENSMUST00000055535.9|Prtg|ENSMUSG00000036030.10|protogenin
mm39_v1_chr16_+_4412546_4412599	0.03250353623098662	UAUUGCU	ENSMUST00000014447.13|Glis2|ENSMUSG00000014303.14|GLIS family zinc finger 2
mm39_v1_chr4_-_57301791_57301837	0.03203113812613805	UAUUGCU	ENSMUST00000075637.11|Ptpn3|ENSMUSG00000038764.15|protein tyrosine phosphatase, non-receptor type 3
mm39_v1_chr6_+_50087167_50087363	0.032002198015991606	UAUUGCU	ENSMUST00000166318.8|Mpp6|ENSMUSG00000038388.15|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	ENSMUST00000036236.15|Mpp6|ENSMUSG00000038388.15|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	ENSMUST00000204545.3|Mpp6|ENSMUSG00000038388.15|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	ENSMUST00000036225.15|Mpp6|ENSMUSG00000038388.15|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
mm39_v1_chr17_+_64907697_64907761	0.03066317895978745	UAUUGCU	ENSMUST00000086723.10|Man2a1|ENSMUSG00000024085.14|mannosidase 2, alpha 1
mm39_v1_chr9_-_62029877_62029900	0.030349373434151252	UAUUGCU	ENSMUST00000185675.7|Glce|ENSMUSG00000032252.15|glucuronyl C5-epimerase
mm39_v1_chr12_+_81678143_81678169	0.030277864179854928	UAUUGCU	ENSMUST00000036116.6|Ttc9|ENSMUSG00000042734.7|tetratricopeptide repeat domain 9
mm39_v1_chr4_+_124594492_124594522	0.029505012167365483	UAUUGCU	ENSMUST00000106199.10|Fhl3|ENSMUSG00000032643.13|four and a half LIM domains 3	ENSMUST00000038684.6|Fhl3|ENSMUSG00000032643.13|four and a half LIM domains 3
mm39_v1_chr18_+_58011691_58011750	0.02863462893138467	UAUUGCU	ENSMUST00000115366.3|Slc12a2|ENSMUSG00000024597.12|solute carrier family 12, member 2
mm39_v1_chr15_+_41652777_41652913	0.027512505228178365	UAUUGCU	ENSMUST00000230778.2|Oxr1|ENSMUSG00000022307.17|oxidation resistance 1	ENSMUST00000022918.15|Oxr1|ENSMUSG00000022307.17|oxidation resistance 1	ENSMUST00000090095.13|Oxr1|ENSMUSG00000022307.17|oxidation resistance 1
mm39_v1_chr5_-_124387812_124387845	0.027246330566624778	UAUUGCU	ENSMUST00000162812.8|Pitpnm2|ENSMUSG00000029406.16|phosphatidylinositol transfer protein, membrane-associated 2
mm39_v1_chr4_+_132001680_132001744	0.02705365133307146	UAUUGCU	ENSMUST00000030731.11|Taf12|ENSMUSG00000028899.12|TATA-box binding protein associated factor 12	ENSMUST00000105963.2|Taf12|ENSMUSG00000028899.12|TATA-box binding protein associated factor 12
mm39_v1_chr9_+_86904067_86904134	0.02679786429461453	UAUUGCU	ENSMUST00000168529.9|Cyb5r4|ENSMUSG00000032872.17|cytochrome b5 reductase 4
mm39_v1_chr2_+_134627987_134628090	0.026472100862725025	UAUUGCU	ENSMUST00000131552.5|Plcb1|ENSMUSG00000051177.17|phospholipase C, beta 1	ENSMUST00000110116.8|Plcb1|ENSMUSG00000051177.17|phospholipase C, beta 1
mm39_v1_chr18_+_24338358_24338406	0.026350654109378955	UAUUGCU	ENSMUST00000000430.14|Galnt1|ENSMUSG00000000420.16|polypeptide N-acetylgalactosaminyltransferase 1
mm39_v1_chr7_-_16657825_16658039	0.026182659151260144	UAUUGCU	ENSMUST00000019514.10|Calm3|ENSMUSG00000019370.11|calmodulin 3
mm39_v1_chr19_+_32597379_32597431	0.02593581486881188	UAUUGCU	ENSMUST00000236290.2|Papss2|ENSMUSG00000024899.8|3'-phosphoadenosine 5'-phosphosulfate synthase 2	ENSMUST00000025833.7|Papss2|ENSMUSG00000024899.8|3'-phosphoadenosine 5'-phosphosulfate synthase 2
mm39_v1_chrX_+_13147209_13147270	0.02579702075283774	UAUUGCU	ENSMUST00000000804.7|Ddx3x|ENSMUSG00000000787.13|DEAD box helicase 3, X-linked
mm39_v1_chr2_+_151384403_151384423	0.025423532473451707	UAUUGCU	ENSMUST00000044011.12|Fkbp1a|ENSMUSG00000032966.15|FK506 binding protein 1a
mm39_v1_chr11_+_51654511_51654579	0.025411652757905013	UAUUGCU	ENSMUST00000020653.6|Sar1b|ENSMUSG00000020386.6|secretion associated Ras related GTPase 1B
mm39_v1_chr3_+_28317354_28317364	0.02513962296366374	UAUUGCU	ENSMUST00000159236.9|Tnik|ENSMUSG00000027692.17|TRAF2 and NCK interacting kinase
mm39_v1_chr5_-_23821523_23821596	0.025020848940309103	UAUUGCU	ENSMUST00000088392.9|Srpk2|ENSMUSG00000062604.12|serine/arginine-rich protein specific kinase 2
mm39_v1_chr13_-_69147639_69147684	0.024967842611678327	UAUUGCU	ENSMUST00000022013.8|Adcy2|ENSMUSG00000021536.8|adenylate cyclase 2
mm39_v1_chr4_-_126427234_126427272	0.02483710054149114	UAUUGCU	ENSMUST00000084289.5|Ago4|ENSMUSG00000042500.12|argonaute RISC catalytic subunit 4
mm39_v1_chr13_-_74465353_74465440	0.02450619174138879	UAUUGCU	ENSMUST00000022060.7|Pdcd6|ENSMUSG00000021576.7|programmed cell death 6
mm39_v1_chr1_+_179788037_179788150	0.024117295191973896	UAUUGCU	ENSMUST00000097453.9|Cdc42bpa|ENSMUSG00000026490.19|CDC42 binding protein kinase alpha	ENSMUST00000111117.8|Cdc42bpa|ENSMUSG00000026490.19|CDC42 binding protein kinase alpha
mm39_v1_chr18_+_56565188_56565236	0.024050278962656668	UAUUGCU	ENSMUST00000070166.6|Gramd3|ENSMUSG00000001700.11|GRAM domain containing 3
mm39_v1_chr15_+_44482944_44483033	0.023773880215959414	UAUUGCU	ENSMUST00000022964.9|Ebag9|ENSMUSG00000022339.10|estrogen receptor-binding fragment-associated gene 9
mm39_v1_chr7_-_80052491_80052510	0.02353490859673277	UAUUGCU	ENSMUST00000122232.8|Furin|ENSMUSG00000030530.16|furin (paired basic amino acid cleaving enzyme)
mm39_v1_chr11_+_32297803_32297865	0.02347839386823956	UAUUGCU	ENSMUST00000038753.6|Sh3pxd2b|ENSMUSG00000040711.9|SH3 and PX domains 2B	ENSMUST00000239041.2|Sh3pxd2b|ENSMUSG00000040711.9|SH3 and PX domains 2B
mm39_v1_chrX_-_17438520_17438564	0.023314773000661662	UAUUGCU	ENSMUST00000026016.13|Fundc1|ENSMUSG00000025040.14|FUN14 domain containing 1
mm39_v1_chr1_+_131838294_131838310	0.023300617797878936	UAUUGCU	ENSMUST00000062264.8|Nucks1|ENSMUSG00000026434.13|nuclear casein kinase and cyclin-dependent kinase substrate 1
mm39_v1_chr14_-_39194782_39195045	0.023250640242392498	UAUUGCU	ENSMUST00000168810.9|Nrg3|ENSMUSG00000041014.18|neuregulin 3	ENSMUST00000173780.2|Nrg3|ENSMUSG00000041014.18|neuregulin 3	ENSMUST00000166968.9|Nrg3|ENSMUSG00000041014.18|neuregulin 3
mm39_v1_chr10_-_126896024_126896075	0.023199625609137374	UAUUGCU	ENSMUST00000040307.6|Marchf9|ENSMUSG00000040502.6|membrane associated ring-CH-type finger 9
mm39_v1_chr5_+_65694552_65694576	0.023140470874595778	UAUUGCU	ENSMUST00000142407.8|Ube2k|ENSMUSG00000029203.17|ubiquitin-conjugating enzyme E2K
mm39_v1_chr4_+_14864076_14864147	0.02304596453669133	UAUUGCU	ENSMUST00000029875.4|Pip4p2|ENSMUSG00000028221.4|phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2
mm39_v1_chr8_-_81466126_81466126	0.022860410717170966	UAUUGCU	ENSMUST00000043359.9|Smarca5|ENSMUSG00000031715.15|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
mm39_v1_chrX_-_110606766_110606834	0.022564411671670278	UAUUGCU	ENSMUST00000113422.9|Hdx|ENSMUSG00000034551.13|highly divergent homeobox	ENSMUST00000038472.7|Hdx|ENSMUSG00000034551.13|highly divergent homeobox
mm39_v1_chr13_+_91609169_91609262	0.02233747068429287	UAUUGCU	ENSMUST00000004094.15|Ssbp2|ENSMUSG00000003992.16|single-stranded DNA binding protein 2	ENSMUST00000042122.15|Ssbp2|ENSMUSG00000003992.16|single-stranded DNA binding protein 2
mm39_v1_chr18_-_61533434_61533520	0.022095078813552174	UAUUGCU	ENSMUST00000063307.6|Ppargc1b|ENSMUSG00000033871.15|peroxisome proliferative activated receptor, gamma, coactivator 1 beta	ENSMUST00000075299.13|Ppargc1b|ENSMUSG00000033871.15|peroxisome proliferative activated receptor, gamma, coactivator 1 beta
mm39_v1_chr7_-_118304930_118305009	0.022094002351652948	UAUUGCU	ENSMUST00000207323.2|Gde1|ENSMUSG00000033917.16|glycerophosphodiester phosphodiesterase 1	ENSMUST00000038791.15|Gde1|ENSMUSG00000033917.16|glycerophosphodiester phosphodiesterase 1
mm39_v1_chr8_-_23747023_23747047	0.021951785155237356	UAUUGCU	ENSMUST00000121783.7|Golga7|ENSMUSG00000015341.18|golgi autoantigen, golgin subfamily a, 7
mm39_v1_chr18_+_9212154_9212171	0.021606592022889212	UAUUGCU	ENSMUST00000041080.7|Fzd8|ENSMUSG00000036904.7|frizzled class receptor 8
mm39_v1_chr13_+_110039620_110039645	0.021588381791434765	UAUUGCU	ENSMUST00000120664.8|Pde4d|ENSMUSG00000021699.18|phosphodiesterase 4D, cAMP specific
mm39_v1_chr12_-_79030250_79030267	0.02151689260237384	UAUUGCU	ENSMUST00000070174.14|Tmem229b|ENSMUSG00000046157.14|transmembrane protein 229B
mm39_v1_chr16_-_62607105_62607161	0.021511024348940862	UAUUGCU	ENSMUST00000152553.2|Nsun3|ENSMUSG00000050312.13|NOL1/NOP2/Sun domain family member 3	ENSMUST00000063089.12|Nsun3|ENSMUSG00000050312.13|NOL1/NOP2/Sun domain family member 3
mm39_v1_chr19_+_43678109_43678133	0.021321916646660628	UAUUGCU	ENSMUST00000081079.6|Entpd7|ENSMUSG00000025192.14|ectonucleoside triphosphate diphosphohydrolase 7
mm39_v1_chr11_-_60111391_60111458	0.02087340492206804	UAUUGCU	ENSMUST00000020846.8|Srebf1|ENSMUSG00000020538.16|sterol regulatory element binding transcription factor 1
mm39_v1_chr19_+_36903471_36903541	0.02070566311641364	UAUUGCU	ENSMUST00000099494.4|Btaf1|ENSMUSG00000040565.9|B-TFIID TATA-box binding protein associated factor 1
mm39_v1_chr2_-_125701059_125701141	0.020578583777651427	UAUUGCU	ENSMUST00000110463.8|Cops2|ENSMUSG00000027206.14|COP9 signalosome subunit 2	ENSMUST00000028635.6|Cops2|ENSMUSG00000027206.14|COP9 signalosome subunit 2
mm39_v1_chr12_-_54909568_54909706	0.020450270198895146	UAUUGCU	ENSMUST00000078124.8|Cfl2|ENSMUSG00000062929.9|cofilin 2, muscle
mm39_v1_chr1_-_178165223_178165362	0.02043143293992063	UAUUGCU	ENSMUST00000037748.9|Hnrnpu|ENSMUSG00000039630.11|heterogeneous nuclear ribonucleoprotein U
mm39_v1_chr18_-_88912446_88912497	0.02008201461749479	UAUUGCU	ENSMUST00000070116.12|Socs6|ENSMUSG00000056153.16|suppressor of cytokine signaling 6	ENSMUST00000125362.8|Socs6|ENSMUSG00000056153.16|suppressor of cytokine signaling 6
mm39_v1_chr4_+_95855442_95855558	0.02007022457496621	UAUUGCU	ENSMUST00000030306.14|Hook1|ENSMUSG00000028572.14|hook microtubule tethering protein 1
mm39_v1_chr18_-_9450097_9450174	0.020019664944169232	UAUUGCU	ENSMUST00000053917.6|Ccny|ENSMUSG00000024286.9|cyclin Y
mm39_v1_chr7_+_131568167_131568198	0.01982245922531671	UAUUGCU	ENSMUST00000045840.5|Gpr26|ENSMUSG00000040125.5|G protein-coupled receptor 26
mm39_v1_chr13_-_43634695_43634823	0.01974769332125718	UAUUGCU	ENSMUST00000144326.4|Ranbp9|ENSMUSG00000038546.10|RAN binding protein 9
mm39_v1_chr5_-_143513732_143513791	0.0197302696369748	UAUUGCU	ENSMUST00000100489.4|Rac1|ENSMUSG00000001847.15|Rac family small GTPase 1	ENSMUST00000080537.14|Rac1|ENSMUSG00000001847.15|Rac family small GTPase 1
mm39_v1_chr12_+_102915102_102915133	0.01962396203995251	UAUUGCU	ENSMUST00000101099.12|Unc79|ENSMUSG00000021198.17|unc-79 homolog
mm39_v1_chr9_-_32452885_32452898	0.019598925966131445	UAUUGCU	ENSMUST00000016231.14|Fli1|ENSMUSG00000016087.14|Friend leukemia integration 1
mm39_v1_chr19_+_38825005_38825056	0.01916100795778762	UAUUGCU	ENSMUST00000037302.6|Tbc1d12|ENSMUSG00000048720.9|TBC1D12: TBC1 domain family, member 12
mm39_v1_chr12_-_65010124_65010159	0.018935833937299012	UAUUGCU	ENSMUST00000021331.9|Klhl28|ENSMUSG00000020948.10|kelch-like 28
mm39_v1_chr14_+_32043944_32043999	0.018931130668500027	UAUUGCU	ENSMUST00000022480.8|Ogdhl|ENSMUSG00000021913.9|oxoglutarate dehydrogenase-like	ENSMUST00000228529.2|Ogdhl|ENSMUSG00000021913.9|oxoglutarate dehydrogenase-like
mm39_v1_chr6_+_97783975_97784028	0.018917448088121375	UAUUGCU	ENSMUST00000203884.3|Mitf|ENSMUSG00000035158.16|melanogenesis associated transcription factor	ENSMUST00000043637.14|Mitf|ENSMUSG00000035158.16|melanogenesis associated transcription factor
mm39_v1_chr15_-_81284244_81284294	0.018876129191435498	UAUUGCU	ENSMUST00000172107.8|St13|ENSMUSG00000022403.16|suppression of tumorigenicity 13	ENSMUST00000169204.2|St13|ENSMUSG00000022403.16|suppression of tumorigenicity 13	ENSMUST00000163382.2|St13|ENSMUSG00000022403.16|suppression of tumorigenicity 13
mm39_v1_chrX_-_112095181_112095219	0.018632181249871708	UAUUGCU	ENSMUST00000026607.15|Chm|ENSMUSG00000025531.15|choroidermia (RAB escort protein 1)	ENSMUST00000113388.3|Chm|ENSMUSG00000025531.15|choroidermia (RAB escort protein 1)
mm39_v1_chr12_-_91556761_91556783	0.018540170475849632	UAUUGCU	ENSMUST00000021345.14|Gtf2a1|ENSMUSG00000020962.15|general transcription factor II A, 1
mm39_v1_chr7_-_110682204_110682244	0.018482214515727548	UAUUGCU	ENSMUST00000161051.8|Eif4g2|ENSMUSG00000005610.18|eukaryotic translation initiation factor 4, gamma 2	ENSMUST00000160132.8|Eif4g2|ENSMUSG00000005610.18|eukaryotic translation initiation factor 4, gamma 2	ENSMUST00000162415.9|Eif4g2|ENSMUSG00000005610.18|eukaryotic translation initiation factor 4, gamma 2
mm39_v1_chr14_-_31552608_31552689	0.018261331996605762	UAUUGCU	ENSMUST00000014640.9|Ankrd28|ENSMUSG00000014496.9|ankyrin repeat domain 28
mm39_v1_chr18_+_86413077_86413094	0.01815127194581565	UAUUGCU	ENSMUST00000058829.4|Neto1|ENSMUSG00000050321.4|neuropilin (NRP) and tolloid (TLL)-like 1
mm39_v1_chr17_+_28396103_28396214	0.018027468034788198	UAUUGCU	ENSMUST00000073534.10|Zfp523|ENSMUSG00000024220.15|zinc finger protein 523
mm39_v1_chr5_+_114912738_114912738	0.01770204996784345	UAUUGCU	ENSMUST00000102578.11|Ankrd13a|ENSMUSG00000041870.18|ankyrin repeat domain 13a
mm39_v1_chr4_+_106768662_106768708	0.017622747047525558	UAUUGCU	ENSMUST00000030367.15|Ssbp3|ENSMUSG00000061887.15|single-stranded DNA binding protein 3	ENSMUST00000149926.8|Ssbp3|ENSMUSG00000061887.15|single-stranded DNA binding protein 3
mm39_v1_chr6_-_22356098_22356174	0.017531846497775623	UAUUGCU	ENSMUST00000165576.8|Fam3c|ENSMUSG00000029672.17|family with sequence similarity 3, member C
mm39_v1_chr8_-_32408864_32408913	0.017518927207305014	UAUUGCU	ENSMUST00000073884.7|Nrg1|ENSMUSG00000062991.10|neuregulin 1	ENSMUST00000238812.2|Nrg1|ENSMUSG00000062991.10|neuregulin 1
mm39_v1_chr10_-_78188153_78188294	0.017399505274467437	UAUUGCU	ENSMUST00000001240.12|Agpat3|ENSMUSG00000001211.16|1-acylglycerol-3-phosphate O-acyltransferase 3
mm39_v1_chr10_-_44334711_44334747	0.017321121942641023	UAUUGCU	ENSMUST00000039174.11|Prdm1|ENSMUSG00000038151.14|PR domain containing 1, with ZNF domain
mm39_v1_chr12_+_69418886_69418946	0.017073043005242147	UAUUGCU	ENSMUST00000050063.9|Arf6|ENSMUSG00000044147.9|ADP-ribosylation factor 6
mm39_v1_chr8_+_84334805_84334827	0.017035503467613483	UAUUGCU	ENSMUST00000005620.10|Dnajb1|ENSMUSG00000005483.11|DnaJ heat shock protein family (Hsp40) member B1
mm39_v1_chr18_-_36330367_36330433	0.017023266999266054	UAUUGCU	ENSMUST00000115713.9|Nrg2|ENSMUSG00000060275.15|neuregulin 2
mm39_v1_chr4_-_55532453_55532485	0.0169657553151383	UAUUGCU	ENSMUST00000132746.2|Klf4|ENSMUSG00000003032.9|Kruppel-like factor 4 (gut)	ENSMUST00000107619.3|Klf4|ENSMUSG00000003032.9|Kruppel-like factor 4 (gut)
mm39_v1_chr9_-_108141105_108141161	0.01681673272433008	UAUUGCU	ENSMUST00000166905.8|Dag1|ENSMUSG00000039952.16|dystroglycan 1	ENSMUST00000191899.6|Dag1|ENSMUSG00000039952.16|dystroglycan 1
mm39_v1_chr14_+_120513076_120513094	0.016754137361038417	UAUUGCU	ENSMUST00000088419.13|Mbnl2|ENSMUSG00000022139.18|muscleblind like splicing factor 2
mm39_v1_chr13_-_95511837_95511877	0.016632976807008017	UAUUGCU	ENSMUST00000022189.9|Aggf1|ENSMUSG00000021681.9|angiogenic factor with G patch and FHA domains 1
mm39_v1_chr6_+_141194886_141194995	0.01661280668594819	UAUUGCU	ENSMUST00000043259.10|Pde3a|ENSMUSG00000041741.11|phosphodiesterase 3A, cGMP inhibited
mm39_v1_chr2_+_60040231_60040288	0.016458075764632915	UAUUGCU	ENSMUST00000102748.11|Marchf7|ENSMUSG00000026977.18|membrane associated ring-CH-type finger 7
mm39_v1_chr2_+_49341498_49341571	0.016330465023777878	UAUUGCU	ENSMUST00000092123.11|Epc2|ENSMUSG00000069495.13|enhancer of polycomb homolog 2
mm39_v1_chr12_-_32111214_32111302	0.0162422603775502	UAUUGCU	ENSMUST00000003079.12|Prkar2b|ENSMUSG00000002997.16|protein kinase, cAMP dependent regulatory, type II beta	ENSMUST00000036497.16|Prkar2b|ENSMUSG00000002997.16|protein kinase, cAMP dependent regulatory, type II beta
mm39_v1_chr19_+_10366753_10366847	0.016198952973578873	UAUUGCU	ENSMUST00000169121.9|Syt7|ENSMUSG00000024743.17|synaptotagmin VII	ENSMUST00000076968.11|Syt7|ENSMUSG00000024743.17|synaptotagmin VII	ENSMUST00000235479.2|Syt7|ENSMUSG00000024743.17|synaptotagmin VII	ENSMUST00000223586.2|Syt7|ENSMUSG00000024743.17|synaptotagmin VII	ENSMUST00000235784.2|Syt7|ENSMUSG00000024743.17|synaptotagmin VII	ENSMUST00000224135.3|Syt7|ENSMUSG00000024743.17|synaptotagmin VII	ENSMUST00000225452.3|Syt7|ENSMUSG00000024743.17|synaptotagmin VII	ENSMUST00000237366.2|Syt7|ENSMUSG00000024743.17|synaptotagmin VII
mm39_v1_chr2_+_75489596_75489662	0.01592578795360312	UAUUGCU	ENSMUST00000111964.8|Hnrnpa3|ENSMUSG00000059005.14|heterogeneous nuclear ribonucleoprotein A3	ENSMUST00000111962.8|Hnrnpa3|ENSMUSG00000059005.14|heterogeneous nuclear ribonucleoprotein A3	ENSMUST00000111961.8|Hnrnpa3|ENSMUSG00000059005.14|heterogeneous nuclear ribonucleoprotein A3	ENSMUST00000164947.9|Hnrnpa3|ENSMUSG00000059005.14|heterogeneous nuclear ribonucleoprotein A3	ENSMUST00000090792.11|Hnrnpa3|ENSMUSG00000059005.14|heterogeneous nuclear ribonucleoprotein A3
mm39_v1_chr1_+_153528689_153528771	0.015866197455615093	UAUUGCU	ENSMUST00000041776.12|Rgs8|ENSMUSG00000042671.13|regulator of G-protein signaling 8
mm39_v1_chr1_-_52539395_52539459	0.015711033396071727	UAUUGCU	ENSMUST00000186764.7|Nab1|ENSMUSG00000002881.15|Ngfi-A binding protein 1
mm39_v1_chr4_-_82423985_82424044	0.015563399258804698	UAUUGCU	ENSMUST00000107245.9|Nfib|ENSMUSG00000008575.18|nuclear factor I/B	ENSMUST00000107246.2|Nfib|ENSMUSG00000008575.18|nuclear factor I/B
mm39_v1_chr11_+_78427181_78427194	0.015536003328578041	UAUUGCU	ENSMUST00000128788.8|Ift20|ENSMUSG00000001105.16|intraflagellar transport 20
mm39_v1_chr18_-_14815807_14815971	0.015443528222747175	UAUUGCU	ENSMUST00000040964.13|Ss18|ENSMUSG00000037013.18|SS18, nBAF chromatin remodeling complex subunit	ENSMUST00000234524.2|Ss18|ENSMUSG00000037013.18|SS18, nBAF chromatin remodeling complex subunit	ENSMUST00000092041.11|Ss18|ENSMUSG00000037013.18|SS18, nBAF chromatin remodeling complex subunit	ENSMUST00000040924.9|Ss18|ENSMUSG00000037013.18|SS18, nBAF chromatin remodeling complex subunit
mm39_v1_chr5_-_33432310_33432356	0.01534678199107959	UAUUGCU	ENSMUST00000201372.3|Ctbp1|ENSMUSG00000037373.13|C-terminal binding protein 1	ENSMUST00000202962.4|Ctbp1|ENSMUSG00000037373.13|C-terminal binding protein 1	ENSMUST00000201575.4|Ctbp1|ENSMUSG00000037373.13|C-terminal binding protein 1	ENSMUST00000202868.4|Ctbp1|ENSMUSG00000037373.13|C-terminal binding protein 1	ENSMUST00000079746.10|Ctbp1|ENSMUSG00000037373.13|C-terminal binding protein 1
mm39_v1_chr9_-_108067552_108067617	0.015251182031321853	UAUUGCU	ENSMUST00000035208.14|Bsn|ENSMUSG00000032589.15|bassoon
mm39_v1_chr2_-_167032068_167032093	0.015228104647933177	UAUUGCU	ENSMUST00000059826.10|Kcnb1|ENSMUSG00000050556.10|potassium voltage gated channel, Shab-related subfamily, member 1
mm39_v1_chr10_+_21870565_21870591	0.015090142696352128	UAUUGCU	ENSMUST00000020145.12|Sgk1|ENSMUSG00000019970.16|serum/glucocorticoid regulated kinase 1
mm39_v1_chr9_-_72019109_72019191	0.014784724677583808	UAUUGCU	ENSMUST00000183404.8|Tcf12|ENSMUSG00000032228.17|transcription factor 12	ENSMUST00000184783.8|Tcf12|ENSMUSG00000032228.17|transcription factor 12
mm39_v1_chr2_+_156038562_156038695	0.014727568409250784	UAUUGCU	ENSMUST00000037401.10|Phf20|ENSMUSG00000038116.17|PHD finger protein 20
mm39_v1_chr2_-_122544535_122544559	0.014534405842591504	UAUUGCU	ENSMUST00000005952.11|Slc30a4|ENSMUSG00000005802.13|solute carrier family 30 (zinc transporter), member 4
mm39_v1_chr19_-_55087849_55087925	0.014389290101849406	UAUUGCU	ENSMUST00000061856.6|Gpam|ENSMUSG00000024978.12|glycerol-3-phosphate acyltransferase, mitochondrial
mm39_v1_chr10_-_13428883_13428898	0.014345227085922072	UAUUGCU	ENSMUST00000019945.15|Pex3|ENSMUSG00000019809.17|peroxisomal biogenesis factor 3	ENSMUST00000170376.8|Pex3|ENSMUSG00000019809.17|peroxisomal biogenesis factor 3
mm39_v1_chr18_+_36812246_36812306	0.014269800267467285	UAUUGCU	ENSMUST00000186538.7|Slc35a4|ENSMUSG00000033272.13|solute carrier family 35, member A4
mm39_v1_chr9_-_100428113_100428192	0.014202056732550991	UAUUGCU	ENSMUST00000186591.7|Nck1|ENSMUSG00000032475.16|non-catalytic region of tyrosine kinase adaptor protein 1	ENSMUST00000116522.8|Nck1|ENSMUSG00000032475.16|non-catalytic region of tyrosine kinase adaptor protein 1
mm39_v1_chr11_-_86698484_86698572	0.014113456687730896	UAUUGCU	ENSMUST00000018569.14|Dhx40|ENSMUSG00000018425.19|DEAH (Asp-Glu-Ala-His) box polypeptide 40
mm39_v1_chr19_+_7245591_7245679	0.013867775150366907	UAUUGCU	ENSMUST00000066646.12|Rcor2|ENSMUSG00000024968.15|REST corepressor 2
mm39_v1_chr5_-_21087023_21087122	0.013854748789826746	UAUUGCU	ENSMUST00000118174.8|Phtf2|ENSMUSG00000039987.16|putative homeodomain transcription factor 2
mm39_v1_chr11_+_69217078_69217102	0.013448802552729238	UAUUGCU	ENSMUST00000018614.3|Kcnab3|ENSMUSG00000018470.9|potassium voltage-gated channel, shaker-related subfamily, beta member 3
mm39_v1_chrX_+_67864699_67864699	0.013415565594872182	UAUUGCU	ENSMUST00000096420.3|Gm14698|ENSMUSG00000071748.3|predicted gene 14698
mm39_v1_chr17_+_8502594_8502661	0.013409025739720627	UAUUGCU	ENSMUST00000155364.8|Mpc1|ENSMUSG00000023861.18|mitochondrial pyruvate carrier 1	ENSMUST00000046754.15|Mpc1|ENSMUSG00000023861.18|mitochondrial pyruvate carrier 1
mm39_v1_chr4_+_80828883_80828922	0.013211600598995402	UAUUGCU	ENSMUST00000055922.4|Lurap1l|ENSMUSG00000048706.4|leucine rich adaptor protein 1-like
mm39_v1_chr15_-_103248512_103248527	0.013192526933993665	UAUUGCU	ENSMUST00000168828.3|Zfp385a|ENSMUSG00000000552.11|zinc finger protein 385A
mm39_v1_chr15_-_84331236_84331298	0.013175046204363087	UAUUGCU	ENSMUST00000080751.10|Shisal1|ENSMUSG00000062760.12|shisa like 1	ENSMUST00000239449.2|Shisal1|ENSMUSG00000062760.12|shisa like 1
mm39_v1_chr11_+_72498029_72498133	0.013037363414395696	UAUUGCU	ENSMUST00000021148.13|Ube2g1|ENSMUSG00000020794.14|ubiquitin-conjugating enzyme E2G 1	ENSMUST00000138247.8|Ube2g1|ENSMUSG00000020794.14|ubiquitin-conjugating enzyme E2G 1
mm39_v1_chrX_-_151552457_151552662	0.013027803350934473	UAUUGCU	ENSMUST00000101141.9|Shroom2|ENSMUSG00000045180.14|shroom family member 2	ENSMUST00000062317.5|Shroom2|ENSMUSG00000045180.14|shroom family member 2
mm39_v1_chrX_-_50106844_50106910	0.013010292198466271	UAUUGCU	ENSMUST00000053593.8|Rap2c|ENSMUSG00000050029.8|RAP2C, member of RAS oncogene family
mm39_v1_chr11_-_102709936_102710041	0.012891903695877671	UAUUGCU	ENSMUST00000068933.12|Gjc1|ENSMUSG00000034520.15|gap junction protein, gamma 1
mm39_v1_chr6_-_59403264_59403330	0.012586088170779101	UAUUGCU	ENSMUST00000051065.6|Gprin3|ENSMUSG00000045441.6|GPRIN family member 3
mm39_v1_chr7_-_46782448_46782465	0.01250943748485314	UAUUGCU	ENSMUST00000033142.13|Ptpn5|ENSMUSG00000030854.18|protein tyrosine phosphatase, non-receptor type 5
mm39_v1_chr3_+_58322119_58322161	0.012508510444264653	UAUUGCU	ENSMUST00000099090.7|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2	ENSMUST00000199164.2|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2
mm39_v1_chr15_-_78602971_78602971	0.012491377167025225	UAUUGCU	ENSMUST00000088592.6|Elfn2|ENSMUSG00000043460.8|leucine rich repeat and fibronectin type III, extracellular 2
mm39_v1_chr10_+_67373691_67373760	0.012432303722964978	UAUUGCU	ENSMUST00000048289.14|Egr2|ENSMUSG00000037868.16|early growth response 2	ENSMUST00000130933.2|Egr2|ENSMUSG00000037868.16|early growth response 2	ENSMUST00000105438.9|Egr2|ENSMUSG00000037868.16|early growth response 2	ENSMUST00000146986.2|Egr2|ENSMUSG00000037868.16|early growth response 2
mm39_v1_chr18_+_61688329_61688361	0.012348738104945965	UAUUGCU	ENSMUST00000165123.8|Csnk1a1|ENSMUSG00000024576.15|casein kinase 1, alpha 1
mm39_v1_chr1_+_194302123_194302141	0.01230560635361177	UAUUGCU	ENSMUST00000027952.12|Plxna2|ENSMUSG00000026640.13|plexin A2
mm39_v1_chr17_-_43187280_43187368	0.012050518752312986	UAUUGCU	ENSMUST00000024709.9|Cd2ap|ENSMUSG00000061665.8|CD2-associated protein	ENSMUST00000233476.2|Cd2ap|ENSMUSG00000061665.8|CD2-associated protein
mm39_v1_chr1_-_80318197_80318229	0.011921717404731611	UAUUGCU	ENSMUST00000163119.8|Cul3|ENSMUSG00000004364.15|cullin 3
mm39_v1_chrX_-_141749704_141749730	0.011858683073957309	UAUUGCU	ENSMUST00000041317.3|Ammecr1|ENSMUSG00000042225.4|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
mm39_v1_chr8_+_54530530_54530641	0.011682195124718076	UAUUGCU	ENSMUST00000033919.6|Vegfc|ENSMUSG00000031520.7|vascular endothelial growth factor C
mm39_v1_chr2_-_25982160_25982189	0.011666845803305383	UAUUGCU	ENSMUST00000114159.9|Nacc2|ENSMUSG00000026932.15|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm39_v1_chr13_+_119565424_119565498	0.011652438406331133	UAUUGCU	ENSMUST00000026520.14|Paip1|ENSMUSG00000025451.16|polyadenylate binding protein-interacting protein 1
mm39_v1_chrY_-_1286623_1286635	0.011594446491593016	UAUUGCU	ENSMUST00000091190.12|Ddx3y|ENSMUSG00000069045.12|DEAD box helicase 3, Y-linked
mm39_v1_chr16_-_67417768_67417810	0.011511275023210806	UAUUGCU	ENSMUST00000114292.8|Cadm2|ENSMUSG00000064115.14|cell adhesion molecule 2	ENSMUST00000120898.8|Cadm2|ENSMUSG00000064115.14|cell adhesion molecule 2
mm39_v1_chr2_-_113047397_113047439	0.011282041298521254	UAUUGCU	ENSMUST00000080673.13|Ryr3|ENSMUSG00000057378.16|ryanodine receptor 3	ENSMUST00000208151.2|Ryr3|ENSMUSG00000057378.16|ryanodine receptor 3	ENSMUST00000208290.2|Ryr3|ENSMUSG00000057378.16|ryanodine receptor 3
mm39_v1_chr6_-_39702381_39702413	0.01102630578195243	UAUUGCU	ENSMUST00000002487.15|Braf|ENSMUSG00000002413.16|Braf transforming gene
mm39_v1_chr7_-_30656167_30656228	0.010944588608673797	UAUUGCU	ENSMUST00000162228.9|Usf2|ENSMUSG00000058239.14|upstream transcription factor 2	ENSMUST00000172417.3|Usf2|ENSMUSG00000058239.14|upstream transcription factor 2	ENSMUST00000108119.10|Usf2|ENSMUSG00000058239.14|upstream transcription factor 2	ENSMUST00000058860.14|Usf2|ENSMUSG00000058239.14|upstream transcription factor 2
mm39_v1_chr7_-_46658144_46658169	0.010918893342574235	UAUUGCU	ENSMUST00000061639.10|Spty2d1|ENSMUSG00000049516.10|SPT2 chromatin protein domain containing 1
mm39_v1_chr9_-_89505178_89505178	0.01086811431447598	UAUUGCU	ENSMUST00000044491.13|Minar1|ENSMUSG00000039313.15|membrane integral NOTCH2 associated receptor 1
mm39_v1_chr2_-_132420074_132420153	0.010866759416842238	UAUUGCU	ENSMUST00000110136.8|Gpcpd1|ENSMUSG00000027346.16|glycerophosphocholine phosphodiesterase 1	ENSMUST00000124107.8|Gpcpd1|ENSMUSG00000027346.16|glycerophosphocholine phosphodiesterase 1	ENSMUST00000060955.12|Gpcpd1|ENSMUSG00000027346.16|glycerophosphocholine phosphodiesterase 1
mm39_v1_chr18_-_67857594_67857671	0.010815249829722526	UAUUGCU	ENSMUST00000120934.8|Ptpn2|ENSMUSG00000024539.18|protein tyrosine phosphatase, non-receptor type 2	ENSMUST00000025420.14|Ptpn2|ENSMUSG00000024539.18|protein tyrosine phosphatase, non-receptor type 2	ENSMUST00000122412.2|Ptpn2|ENSMUSG00000024539.18|protein tyrosine phosphatase, non-receptor type 2
mm39_v1_chr8_+_47986674_47986745	0.01064029411309069	UAUUGCU	ENSMUST00000033973.14|Rwdd4a|ENSMUSG00000031568.17|RWD domain containing 4A	ENSMUST00000176379.2|Rwdd4a|ENSMUSG00000031568.17|RWD domain containing 4A
mm39_v1_chr12_+_110452222_110452293	0.010640109393592601	UAUUGCU	ENSMUST00000084985.11|Ppp2r5c|ENSMUSG00000017843.15|protein phosphatase 2, regulatory subunit B', gamma	ENSMUST00000221074.2|Ppp2r5c|ENSMUSG00000017843.15|protein phosphatase 2, regulatory subunit B', gamma
mm39_v1_chr10_-_127502541_127502615	0.01057452729637226	UAUUGCU	ENSMUST00000026469.9|Nab2|ENSMUSG00000025402.13|Ngfi-A binding protein 2
mm39_v1_chr4_-_140867038_140867083	0.010568963198468324	UAUUGCU	ENSMUST00000148204.8|Szrd1|ENSMUSG00000040842.18|SUZ RNA binding domain containing 1	ENSMUST00000102487.4|Szrd1|ENSMUSG00000040842.18|SUZ RNA binding domain containing 1
mm39_v1_chr16_-_50252703_50252772	0.010514403782120638	UAUUGCU	ENSMUST00000066037.13|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000089399.11|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000089404.10|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000138166.8|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing
mm39_v1_chr1_-_24626492_24626553	0.010493571776008818	UAUUGCU	ENSMUST00000051344.6|Col19a1|ENSMUSG00000026141.14|collagen, type XIX, alpha 1	ENSMUST00000115244.9|Col19a1|ENSMUSG00000026141.14|collagen, type XIX, alpha 1
mm39_v1_chr5_+_28370687_28370720	0.01042461053933753	UAUUGCU	ENSMUST00000036177.9|En2|ENSMUSG00000039095.9|engrailed 2
mm39_v1_chr7_+_54485336_54485363	0.010305219834620911	UAUUGCU	ENSMUST00000082373.8|Luzp2|ENSMUSG00000063297.8|leucine zipper protein 2
mm39_v1_chr10_-_67384898_67384924	0.010232774061758867	UAUUGCU	ENSMUST00000075686.7|Ado|ENSMUSG00000057134.7|2-aminoethanethiol (cysteamine) dioxygenase
mm39_v1_chr9_-_44792575_44792621	0.01016435612730377	UAUUGCU	ENSMUST00000114689.8|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A	ENSMUST00000002095.11|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A	ENSMUST00000128768.3|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A
mm39_v1_chr9_+_71123061_71123074	0.009961302401043983	UAUUGCU	ENSMUST00000034723.6|Aldh1a2|ENSMUSG00000013584.6|aldehyde dehydrogenase family 1, subfamily A2
mm39_v1_chr18_+_46874920_46874966	0.009931933650087647	UAUUGCU	ENSMUST00000025357.9|Ap3s1|ENSMUSG00000024480.10|adaptor-related protein complex 3, sigma 1 subunit	ENSMUST00000225520.2|Ap3s1|ENSMUSG00000024480.10|adaptor-related protein complex 3, sigma 1 subunit
mm39_v1_chr4_-_46991842_46991916	0.00990600895410248	UAUUGCU	ENSMUST00000107749.4|Gabbr2|ENSMUSG00000039809.11|gamma-aminobutyric acid (GABA) B receptor, 2
mm39_v1_chr4_+_8691303_8691381	0.009784573107182688	UAUUGCU	ENSMUST00000051558.10|Chd7|ENSMUSG00000041235.13|chromodomain helicase DNA binding protein 7
mm39_v1_chr12_+_71877838_71877948	0.00971079897200782	UAUUGCU	ENSMUST00000223272.2|Daam1|ENSMUSG00000034574.11|dishevelled associated activator of morphogenesis 1	ENSMUST00000085299.4|Daam1|ENSMUSG00000034574.11|dishevelled associated activator of morphogenesis 1
mm39_v1_chr15_+_21111428_21111538	0.009680889663500704	UAUUGCU	ENSMUST00000075132.8|Cdh12|ENSMUSG00000040452.10|cadherin 12
mm39_v1_chr17_+_9020522_9020559	0.009659835567160142	UAUUGCU	ENSMUST00000089085.10|Pde10a|ENSMUSG00000023868.18|phosphodiesterase 10A
mm39_v1_chr5_-_114911548_114911577	0.009561804290810228	UAUUGCU	ENSMUST00000178440.8|Git2|ENSMUSG00000041890.18|GIT ArfGAP 2	ENSMUST00000043283.14|Git2|ENSMUSG00000041890.18|GIT ArfGAP 2	ENSMUST00000112185.9|Git2|ENSMUSG00000041890.18|GIT ArfGAP 2	ENSMUST00000155908.8|Git2|ENSMUSG00000041890.18|GIT ArfGAP 2
mm39_v1_chr14_+_63673843_63673974	0.009534817059813884	UAUUGCU	ENSMUST00000121288.2|Fam167a|ENSMUSG00000035095.12|family with sequence similarity 167, member A
mm39_v1_chr15_+_102314809_102314833	0.009494649131912943	UAUUGCU	ENSMUST00000001326.7|Sp1|ENSMUSG00000001280.14|trans-acting transcription factor 1
mm39_v1_chr6_+_4903299_4903347	0.009473353955051849	UAUUGCU	ENSMUST00000035813.9|Ppp1r9a|ENSMUSG00000032827.16|protein phosphatase 1, regulatory subunit 9A
mm39_v1_chr2_-_132095146_132095234	0.009471256756816118	UAUUGCU	ENSMUST00000028817.7|Pcna|ENSMUSG00000027342.15|proliferating cell nuclear antigen
mm39_v1_chrX_+_141009756_141009775	0.009460246856013784	UAUUGCU	ENSMUST00000112916.9|Nxt2|ENSMUSG00000042271.14|nuclear transport factor 2-like export factor 2
mm39_v1_chr19_-_10434837_10434922	0.009414771604792226	UAUUGCU	ENSMUST00000171400.4|Lrrc10b|ENSMUSG00000090291.4|leucine rich repeat containing 10B
mm39_v1_chr3_-_56091096_56091122	0.009268385210390497	UAUUGCU	ENSMUST00000029374.8|Nbea|ENSMUSG00000027799.13|neurobeachin
mm39_v1_chr8_+_106738105_106738160	0.009201169080267885	UAUUGCU	ENSMUST00000034375.11|Dus2|ENSMUSG00000031901.13|dihydrouridine synthase 2
mm39_v1_chr7_+_80707328_80707351	0.009149918960108389	UAUUGCU	ENSMUST00000107348.2|Alpk3|ENSMUSG00000038763.13|alpha-kinase 3
mm39_v1_chr12_-_55033113_55033128	0.009129166739665037	UAUUGCU	ENSMUST00000038926.13|Baz1a|ENSMUSG00000035021.14|bromodomain adjacent to zinc finger domain 1A
mm39_v1_chr6_+_48570817_48570834	0.00894688362714266	UAUUGCU	ENSMUST00000154010.8|Repin1|ENSMUSG00000052751.17|replication initiator 1	ENSMUST00000009420.15|Repin1|ENSMUSG00000052751.17|replication initiator 1	ENSMUST00000163452.7|Repin1|ENSMUSG00000052751.17|replication initiator 1	ENSMUST00000118229.2|Repin1|ENSMUSG00000052751.17|replication initiator 1	ENSMUST00000135151.3|Repin1|ENSMUSG00000052751.17|replication initiator 1
mm39_v1_chr2_+_152068729_152068828	0.008912811202955387	UAUUGCU	ENSMUST00000099224.10|Csnk2a1|ENSMUSG00000074698.11|casein kinase 2, alpha 1 polypeptide	ENSMUST00000124791.8|Csnk2a1|ENSMUSG00000074698.11|casein kinase 2, alpha 1 polypeptide	ENSMUST00000133119.2|Csnk2a1|ENSMUSG00000074698.11|casein kinase 2, alpha 1 polypeptide
mm39_v1_chr1_-_164135008_164135076	0.008909819311603399	UAUUGCU	ENSMUST00000027866.11|Blzf1|ENSMUSG00000026577.14|basic leucine zipper nuclear factor 1	ENSMUST00000120447.8|Blzf1|ENSMUSG00000026577.14|basic leucine zipper nuclear factor 1	ENSMUST00000086032.4|Blzf1|ENSMUSG00000026577.14|basic leucine zipper nuclear factor 1
mm39_v1_chr17_-_91400499_91400504	0.008885174965487344	UAUUGCU	ENSMUST00000160844.10|Nrxn1|ENSMUSG00000024109.19|neurexin I
mm39_v1_chr5_+_111027654_111027708	0.008881548762579508	UAUUGCU	ENSMUST00000040111.10|Ttc28|ENSMUSG00000033209.18|tetratricopeptide repeat domain 28	ENSMUST00000156290.9|Ttc28|ENSMUSG00000033209.18|tetratricopeptide repeat domain 28
mm39_v1_chr12_-_59266511_59266563	0.008868479644641356	UAUUGCU	ENSMUST00000043204.8|Fbxo33|ENSMUSG00000035329.8|F-box protein 33
mm39_v1_chr5_+_122296322_122296419	0.008765768667590894	UAUUGCU	ENSMUST00000102528.11|Ppp1cc|ENSMUSG00000004455.17|protein phosphatase 1 catalytic subunit gamma	ENSMUST00000086294.11|Ppp1cc|ENSMUSG00000004455.17|protein phosphatase 1 catalytic subunit gamma
mm39_v1_chr16_+_58228806_58228886	0.008736648326814733	UAUUGCU	ENSMUST00000046663.8|Dcbld2|ENSMUSG00000035107.14|discoidin, CUB and LCCL domain containing 2
mm39_v1_chr2_+_152873772_152873939	0.008702862761356508	UAUUGCU	ENSMUST00000037235.7|Xkr7|ENSMUSG00000042631.8|X-linked Kx blood group related 7
mm39_v1_chr2_+_145009625_145009693	0.008671220386554653	UAUUGCU	ENSMUST00000110007.8|Slc24a3|ENSMUSG00000063873.11|solute carrier family 24 (sodium/potassium/calcium exchanger), member 3
mm39_v1_chr5_-_143951671_143951737	0.008493202384168534	UAUUGCU	ENSMUST00000031621.11|Ccz1|ENSMUSG00000029617.11|CCZ1 vacuolar protein trafficking and biogenesis associated
mm39_v1_chr11_-_65679101_65679147	0.008488326835455575	UAUUGCU	ENSMUST00000152096.8|Map2k4|ENSMUSG00000033352.12|mitogen-activated protein kinase kinase 4	ENSMUST00000046963.10|Map2k4|ENSMUSG00000033352.12|mitogen-activated protein kinase kinase 4
mm39_v1_chr2_+_157266175_157266243	0.008418330942111717	UAUUGCU	ENSMUST00000029175.14|Src|ENSMUSG00000027646.16|Rous sarcoma oncogene	ENSMUST00000092576.11|Src|ENSMUSG00000027646.16|Rous sarcoma oncogene
mm39_v1_chr8_+_106587212_106587240	0.008319296760209585	UAUUGCU	ENSMUST00000008594.9|Nutf2|ENSMUSG00000008450.9|nuclear transport factor 2
mm39_v1_chr16_+_4704103_4704133	0.008313662836480586	UAUUGCU	ENSMUST00000023159.10|Mgrn1|ENSMUSG00000022517.18|mahogunin, ring finger 1	ENSMUST00000070658.16|Mgrn1|ENSMUSG00000022517.18|mahogunin, ring finger 1	ENSMUST00000229038.2|Mgrn1|ENSMUSG00000022517.18|mahogunin, ring finger 1
mm39_v1_chr11_+_74510413_74510469	0.008295839844908986	UAUUGCU	ENSMUST00000100866.3|Ccdc92b|ENSMUSG00000069814.7|coiled-coil domain containing 92B
mm39_v1_chr13_-_111945499_111945552	0.008266425224258496	UAUUGCU	ENSMUST00000109267.9|Map3k1|ENSMUSG00000021754.18|mitogen-activated protein kinase kinase kinase 1
mm39_v1_chr3_-_142587678_142587787	0.00811485058552653	UAUUGCU	ENSMUST00000043812.15|Pkn2|ENSMUSG00000004591.17|protein kinase N2
mm39_v1_chr8_-_48128164_48128201	0.008056617463641757	UAUUGCU	ENSMUST00000080353.3|Ing2|ENSMUSG00000063049.5|inhibitor of growth family, member 2
mm39_v1_chr8_+_127790772_127791097	0.007978921902953408	UAUUGCU	ENSMUST00000079777.12|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000160272.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000162907.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000162536.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000026921.13|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000162665.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000162602.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000160581.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000161355.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000162531.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000160766.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000159537.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator
mm39_v1_chr2_-_74489763_74489901	0.007970213041767267	UAUUGCU	ENSMUST00000173623.2|Evx2|ENSMUSG00000001815.16|even-skipped homeobox 2	ENSMUST00000001867.13|Evx2|ENSMUSG00000001815.16|even-skipped homeobox 2
mm39_v1_chr13_+_94194269_94194323	0.00786681437358432	UAUUGCU	ENSMUST00000054274.8|Lhfpl2|ENSMUSG00000045312.13|lipoma HMGIC fusion partner-like 2
mm39_v1_chr9_-_94420128_94420142	0.007837988237238136	UAUUGCU	ENSMUST00000113028.2|Dipk2a|ENSMUSG00000045414.8|divergent protein kinase domain 2A
mm39_v1_chr6_+_21949570_21949684	0.007744991884096305	UAUUGCU	ENSMUST00000031680.10|Ing3|ENSMUSG00000029670.13|inhibitor of growth family, member 3	ENSMUST00000115389.8|Ing3|ENSMUSG00000029670.13|inhibitor of growth family, member 3	ENSMUST00000151473.8|Ing3|ENSMUSG00000029670.13|inhibitor of growth family, member 3
mm39_v1_chr9_+_121589044_121589127	0.007605751676077763	UAUUGCU	ENSMUST00000093772.4|Zfp651|ENSMUSG00000013419.8|zinc finger protein 651
mm39_v1_chr18_-_12369351_12369463	0.007594821173522787	UAUUGCU	ENSMUST00000025279.6|Npc1|ENSMUSG00000024413.15|NPC intracellular cholesterol transporter 1
mm39_v1_chr9_-_52590686_52590737	0.007580965849371105	UAUUGCU	ENSMUST00000098768.3|AI593442|ENSMUSG00000078307.4|expressed sequence AI593442	ENSMUST00000213843.2|AI593442|ENSMUSG00000078307.4|expressed sequence AI593442
mm39_v1_chr8_+_77626400_77626456	0.007553869471802056	UAUUGCU	ENSMUST00000109913.9|Nr3c2|ENSMUSG00000031618.14|nuclear receptor subfamily 3, group C, member 2
mm39_v1_chr15_-_76406602_76406699	0.007518098220411107	UAUUGCU	ENSMUST00000096365.5|Scrt1|ENSMUSG00000048385.10|scratch family zinc finger 1
mm39_v1_chr12_-_27392356_27392573	0.007495067635458792	UAUUGCU	ENSMUST00000079063.7|Sox11|ENSMUSG00000063632.7|SRY (sex determining region Y)-box 11
mm39_v1_chr4_+_97665843_97665870	0.0074940197213904085	UAUUGCU	ENSMUST00000075448.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A	ENSMUST00000092532.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A
mm39_v1_chr1_+_187730018_187730031	0.0074922371101918146	UAUUGCU	ENSMUST00000027906.13|Esrrg|ENSMUSG00000026610.14|estrogen-related receptor gamma
mm39_v1_chr1_+_6557455_6557563	0.007465491318223643	UAUUGCU	ENSMUST00000140079.8|St18|ENSMUSG00000033740.18|suppression of tumorigenicity 18	ENSMUST00000131494.8|St18|ENSMUSG00000033740.18|suppression of tumorigenicity 18
mm39_v1_chr13_+_104246245_104246254	0.007454930761906695	UAUUGCU	ENSMUST00000044385.14|Sgtb|ENSMUSG00000042743.14|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
mm39_v1_chr17_+_35219941_35219963	0.0074398487714453935	UAUUGCU	ENSMUST00000087315.14|Vars|ENSMUSG00000007029.17|valyl-tRNA synthetase
mm39_v1_chr7_+_120276801_120276868	0.007381679176028307	UAUUGCU	ENSMUST00000208454.2|Mosmo|ENSMUSG00000046096.8|modulator of smoothened	ENSMUST00000060175.8|Mosmo|ENSMUSG00000046096.8|modulator of smoothened
mm39_v1_chr15_-_48655329_48655459	0.00737666305225325	UAUUGCU	ENSMUST00000160658.8|Csmd3|ENSMUSG00000022311.16|CUB and Sushi multiple domains 3	ENSMUST00000100670.10|Csmd3|ENSMUSG00000022311.16|CUB and Sushi multiple domains 3	ENSMUST00000162830.8|Csmd3|ENSMUSG00000022311.16|CUB and Sushi multiple domains 3
mm39_v1_chr11_-_35871300_35871406	0.0073092321933497665	UAUUGCU	ENSMUST00000018993.7|Wwc1|ENSMUSG00000018849.7|WW, C2 and coiled-coil domain containing 1
mm39_v1_chr3_-_107603778_107603890	0.007223806544168266	UAUUGCU	ENSMUST00000029490.15|Ahcyl1|ENSMUSG00000027893.15|S-adenosylhomocysteine hydrolase-like 1
mm39_v1_chr6_+_122851433_122851541	0.007177422327613664	UAUUGCU	ENSMUST00000032477.6|Necap1|ENSMUSG00000030327.9|NECAP endocytosis associated 1
mm39_v1_chr14_-_33169099_33169138	0.007046742975893737	UAUUGCU	ENSMUST00000111944.10|Mapk8|ENSMUSG00000021936.15|mitogen-activated protein kinase 8	ENSMUST00000022504.12|Mapk8|ENSMUSG00000021936.15|mitogen-activated protein kinase 8	ENSMUST00000111945.9|Mapk8|ENSMUSG00000021936.15|mitogen-activated protein kinase 8
mm39_v1_chr9_-_96634874_96634924	0.007016828435398366	UAUUGCU	ENSMUST00000152594.8|Zbtb38|ENSMUSG00000040433.17|zinc finger and BTB domain containing 38
mm39_v1_chr11_-_80670815_80670871	0.006939873569129113	UAUUGCU	ENSMUST00000041065.14|Myo1d|ENSMUSG00000035441.15|myosin ID	ENSMUST00000070997.6|Myo1d|ENSMUSG00000035441.15|myosin ID
mm39_v1_chr4_-_120682859_120682904	0.006855402279311968	UAUUGCU	ENSMUST00000134979.8|Nfyc|ENSMUSG00000032897.18|nuclear transcription factor-Y gamma	ENSMUST00000136236.8|Nfyc|ENSMUSG00000032897.18|nuclear transcription factor-Y gamma	ENSMUST00000043429.12|Nfyc|ENSMUSG00000032897.18|nuclear transcription factor-Y gamma	ENSMUST00000145658.2|Nfyc|ENSMUSG00000032897.18|nuclear transcription factor-Y gamma
mm39_v1_chr1_-_182345011_182345090	0.006851270583428531	UAUUGCU	ENSMUST00000068505.10|Capn2|ENSMUSG00000026509.16|calpain 2
mm39_v1_chr9_-_111519382_111519416	0.006842946893814951	UAUUGCU	ENSMUST00000035083.8|Stac|ENSMUSG00000032502.9|src homology three (SH3) and cysteine rich domain
mm39_v1_chr5_+_3393893_3393945	0.006799372796100599	UAUUGCU	ENSMUST00000165117.8|Cdk6|ENSMUSG00000040274.12|cyclin-dependent kinase 6	ENSMUST00000197385.2|Cdk6|ENSMUSG00000040274.12|cyclin-dependent kinase 6
mm39_v1_chr8_+_108162985_108163053	0.006772041501634822	UAUUGCU	ENSMUST00000166615.3|Wwp2|ENSMUSG00000031930.12|WW domain containing E3 ubiquitin protein ligase 2	ENSMUST00000213097.2|Wwp2|ENSMUSG00000031930.12|WW domain containing E3 ubiquitin protein ligase 2	ENSMUST00000212205.2|Wwp2|ENSMUSG00000031930.12|WW domain containing E3 ubiquitin protein ligase 2
mm39_v1_chr9_-_117081518_117081557	0.006738192205078774	UAUUGCU	ENSMUST00000111773.10|Rbms3|ENSMUSG00000039607.18|RNA binding motif, single stranded interacting protein	ENSMUST00000068962.14|Rbms3|ENSMUSG00000039607.18|RNA binding motif, single stranded interacting protein	ENSMUST00000044901.14|Rbms3|ENSMUSG00000039607.18|RNA binding motif, single stranded interacting protein
mm39_v1_chr15_+_81686622_81686779	0.006717557253738221	UAUUGCU	ENSMUST00000109553.10|Tef|ENSMUSG00000022389.16|thyrotroph embryonic factor
mm39_v1_chr18_+_70701260_70701469	0.006696302559732463	UAUUGCU	ENSMUST00000074058.11|Mbd2|ENSMUSG00000024513.17|methyl-CpG binding domain protein 2	ENSMUST00000114946.4|Mbd2|ENSMUSG00000024513.17|methyl-CpG binding domain protein 2
mm39_v1_chr16_+_11802445_11802445	0.006631269697974629	UAUUGCU	ENSMUST00000170672.9|Shisa9|ENSMUSG00000022494.16|shisa family member 9	ENSMUST00000023138.8|Shisa9|ENSMUSG00000022494.16|shisa family member 9
mm39_v1_chr6_-_85428207_85428265	0.006558287523539752	UAUUGCU	ENSMUST00000113770.2|Pradc1|ENSMUSG00000030008.10|protease-associated domain containing 1	ENSMUST00000032080.9|Pradc1|ENSMUSG00000030008.10|protease-associated domain containing 1
mm39_v1_chr13_+_38335302_38335314	0.006502340544400363	UAUUGCU	ENSMUST00000127906.8|Dsp|ENSMUSG00000054889.11|desmoplakin
mm39_v1_chr1_+_63485002_63485102	0.006492566349190228	UAUUGCU	ENSMUST00000087374.10|Adam23|ENSMUSG00000025964.16|a disintegrin and metallopeptidase domain 23
mm39_v1_chr11_-_106811507_106811599	0.006478789005034706	UAUUGCU	ENSMUST00000103067.10|Smurf2|ENSMUSG00000018363.17|SMAD specific E3 ubiquitin protein ligase 2
mm39_v1_chr11_+_116809669_116809717	0.006394420681368204	UAUUGCU	ENSMUST00000103027.10|Mgat5b|ENSMUSG00000043857.17|mannoside acetylglucosaminyltransferase 5, isoenzyme B
mm39_v1_chr19_+_53517528_53517545	0.006357630033218588	UAUUGCU	ENSMUST00000038287.7|Dusp5|ENSMUSG00000034765.7|dual specificity phosphatase 5
mm39_v1_chr13_+_46571910_46571986	0.0062989837156329975	UAUUGCU	ENSMUST00000037923.5|Rbm24|ENSMUSG00000038132.7|RNA binding motif protein 24
mm39_v1_chr19_+_6952319_6952371	0.0062929804740540045	UAUUGCU	ENSMUST00000070850.8|Ppp1r14b|ENSMUSG00000056612.8|protein phosphatase 1, regulatory inhibitor subunit 14B
mm39_v1_chr16_+_33201164_33201206	0.006281569720047294	UAUUGCU	ENSMUST00000165418.9|Zfp148|ENSMUSG00000022811.18|zinc finger protein 148
mm39_v1_chr6_-_86646118_86646149	0.006276664778236012	UAUUGCU	ENSMUST00000001184.10|Mxd1|ENSMUSG00000001156.10|MAX dimerization protein 1
mm39_v1_chr2_+_128809268_128809363	0.006248535375444127	UAUUGCU	ENSMUST00000110320.9|Zc3h6|ENSMUSG00000042851.18|zinc finger CCCH type containing 6	ENSMUST00000110319.3|Zc3h6|ENSMUSG00000042851.18|zinc finger CCCH type containing 6
mm39_v1_chr5_-_139798992_139799007	0.006218876394079325	UAUUGCU	ENSMUST00000110832.8|Tmem184a|ENSMUSG00000036687.14|transmembrane protein 184a
mm39_v1_chr17_+_55752485_55752551	0.006106338292994375	UAUUGCU	ENSMUST00000025000.4|St6gal2|ENSMUSG00000024172.11|beta galactoside alpha 2,6 sialyltransferase 2
mm39_v1_chrX_-_12628309_12628318	0.006085631200973788	UAUUGCU	ENSMUST00000096495.11|Med14|ENSMUSG00000064127.14|mediator complex subunit 14	ENSMUST00000076016.6|Med14|ENSMUSG00000064127.14|mediator complex subunit 14
mm39_v1_chr13_-_45155616_45155627	0.006072707559989616	UAUUGCU	ENSMUST00000072329.15|Dtnbp1|ENSMUSG00000057531.15|dystrobrevin binding protein 1
mm39_v1_chr13_-_117162041_117162077	0.006053076134254819	UAUUGCU	ENSMUST00000022239.8|Parp8|ENSMUSG00000021725.10|poly (ADP-ribose) polymerase family, member 8
mm39_v1_chr10_-_117212860_117212883	0.006034961748592	UAUUGCU	ENSMUST00000069168.13|Cpsf6|ENSMUSG00000055531.13|cleavage and polyadenylation specific factor 6	ENSMUST00000176686.8|Cpsf6|ENSMUSG00000055531.13|cleavage and polyadenylation specific factor 6
mm39_v1_chr4_-_35845204_35845204	0.006027012080416065	UAUUGCU	ENSMUST00000164772.8|Lingo2|ENSMUSG00000045083.15|leucine rich repeat and Ig domain containing 2	ENSMUST00000065173.9|Lingo2|ENSMUSG00000045083.15|leucine rich repeat and Ig domain containing 2
mm39_v1_chr13_+_95012107_95012119	0.005959795174143237	UAUUGCU	ENSMUST00000022195.13|Otp|ENSMUSG00000021685.13|orthopedia homeobox
mm39_v1_chr7_-_45367382_45367426	0.005905662370679804	UAUUGCU	ENSMUST00000107737.11|Sphk2|ENSMUSG00000057342.16|sphingosine kinase 2
mm39_v1_chr7_+_18659787_18659826	0.005890004474912204	UAUUGCU	ENSMUST00000032571.10|Nova2|ENSMUSG00000030411.17|NOVA alternative splicing regulator 2	ENSMUST00000220302.2|Nova2|ENSMUSG00000030411.17|NOVA alternative splicing regulator 2
mm39_v1_chr6_+_21215472_21215502	0.005861190886900113	UAUUGCU	ENSMUST00000081542.6|Kcnd2|ENSMUSG00000060882.6|potassium voltage-gated channel, Shal-related family, member 2
mm39_v1_chr7_-_115837034_115837056	0.005835005131978255	UAUUGCU	ENSMUST00000182834.8|Plekha7|ENSMUSG00000045659.19|pleckstrin homology domain containing, family A member 7
mm39_v1_chr4_-_117992064_117992168	0.005827288760585445	UAUUGCU	ENSMUST00000097912.8|St3gal3|ENSMUSG00000028538.13|ST3 beta-galactoside alpha-2,3-sialyltransferase 3	ENSMUST00000030263.9|St3gal3|ENSMUSG00000028538.13|ST3 beta-galactoside alpha-2,3-sialyltransferase 3	ENSMUST00000106410.8|St3gal3|ENSMUSG00000028538.13|ST3 beta-galactoside alpha-2,3-sialyltransferase 3
mm39_v1_chr2_+_93472657_93472733	0.005746083779305684	UAUUGCU	ENSMUST00000042078.10|Alx4|ENSMUSG00000040310.13|aristaless-like homeobox 4	ENSMUST00000111254.2|Alx4|ENSMUSG00000040310.13|aristaless-like homeobox 4
mm39_v1_chr1_-_164285914_164285932	0.0056528571872934115	UAUUGCU	ENSMUST00000027863.13|Atp1b1|ENSMUSG00000026576.13|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm39_v1_chr16_+_43960183_43960263	0.00564163316031453	UAUUGCU	ENSMUST00000159514.8|Naa50|ENSMUSG00000022698.18|N(alpha)-acetyltransferase 50, NatE catalytic subunit	ENSMUST00000161326.8|Naa50|ENSMUSG00000022698.18|N(alpha)-acetyltransferase 50, NatE catalytic subunit	ENSMUST00000063520.15|Naa50|ENSMUSG00000022698.18|N(alpha)-acetyltransferase 50, NatE catalytic subunit	ENSMUST00000063542.8|Naa50|ENSMUSG00000022698.18|N(alpha)-acetyltransferase 50, NatE catalytic subunit
mm39_v1_chr5_-_124563969_124564011	0.005572264188744373	UAUUGCU	ENSMUST00000065263.12|Sbno1|ENSMUSG00000038095.16|strawberry notch 1
mm39_v1_chr19_-_37184692_37184907	0.005541151787988016	UAUUGCU	ENSMUST00000132580.8|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3	ENSMUST00000079754.11|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3	ENSMUST00000136286.8|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3	ENSMUST00000126188.8|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3	ENSMUST00000126781.2|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3
mm39_v1_chr5_-_136596299_136596390	0.005511657368030046	UAUUGCU	ENSMUST00000004097.16|Cux1|ENSMUSG00000029705.18|cut-like homeobox 1
mm39_v1_chr12_-_108241392_108241476	0.005441656741057169	UAUUGCU	ENSMUST00000136175.3|Ccdc85c|ENSMUSG00000084883.3|coiled-coil domain containing 85C
mm39_v1_chrX_-_74174608_74174622	0.005379758570623738	UAUUGCU	ENSMUST00000033775.9|Mpp1|ENSMUSG00000031402.13|membrane protein, palmitoylated
mm39_v1_chr7_+_51271742_51271762	0.005378019060383285	UAUUGCU	ENSMUST00000032710.7|Slc17a6|ENSMUSG00000030500.7|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6
mm39_v1_chr2_-_132657891_132657974	0.0053507657732209096	UAUUGCU	ENSMUST00000039554.7|Trmt6|ENSMUSG00000037376.15|tRNA methyltransferase 6
mm39_v1_chr12_+_110704378_110704459	0.005338419246269058	UAUUGCU	ENSMUST00000193053.6|Wdr20|ENSMUSG00000037957.15|WD repeat domain 20	ENSMUST00000095410.8|Wdr20|ENSMUSG00000037957.15|WD repeat domain 20
mm39_v1_chr19_+_28812474_28812541	0.00522309511357225	UAUUGCU	ENSMUST00000025875.5|Slc1a1|ENSMUSG00000024935.12|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1
mm39_v1_chr16_-_9812410_9812446	0.005178579808596637	UAUUGCU	ENSMUST00000115835.8|Grin2a|ENSMUSG00000059003.13|glutamate receptor, ionotropic, NMDA2A (epsilon 1)
mm39_v1_chr9_-_16289527_16289527	0.005124543727383385	UAUUGCU	ENSMUST00000082170.6|Fat3|ENSMUSG00000074505.7|FAT atypical cadherin 3
mm39_v1_chr3_+_31956814_31956852	0.005098250567910743	UAUUGCU	ENSMUST00000192429.6|Kcnmb2|ENSMUSG00000037610.16|potassium large conductance calcium-activated channel, subfamily M, beta member 2	ENSMUST00000191869.6|Kcnmb2|ENSMUSG00000037610.16|potassium large conductance calcium-activated channel, subfamily M, beta member 2	ENSMUST00000178668.2|Kcnmb2|ENSMUSG00000037610.16|potassium large conductance calcium-activated channel, subfamily M, beta member 2	ENSMUST00000119970.8|Kcnmb2|ENSMUSG00000037610.16|potassium large conductance calcium-activated channel, subfamily M, beta member 2
mm39_v1_chr8_+_125739724_125739745	0.005075618617668164	UAUUGCU	ENSMUST00000075896.7|Tsnax|ENSMUSG00000056820.8|translin-associated factor X
mm39_v1_chr2_-_77349909_77349991	0.005054397670393416	UAUUGCU	ENSMUST00000111830.9|Zfp385b|ENSMUSG00000027016.18|zinc finger protein 385B
mm39_v1_chr12_+_111540920_111540977	0.005040678093667618	UAUUGCU	ENSMUST00000075281.8|Mark3|ENSMUSG00000007411.17|MAP/microtubule affinity regulating kinase 3	ENSMUST00000084953.13|Mark3|ENSMUSG00000007411.17|MAP/microtubule affinity regulating kinase 3
mm39_v1_chr15_-_103275190_103275225	0.00496523833481409	UAUUGCU	ENSMUST00000023128.8|Itga5|ENSMUSG00000000555.9|integrin alpha 5 (fibronectin receptor alpha)
mm39_v1_chr8_+_129085719_129085787	0.004940503652948185	UAUUGCU	ENSMUST00000026917.10|Nrp1|ENSMUSG00000025810.10|neuropilin 1
mm39_v1_chr9_+_45281483_45281530	0.004921874759010208	UAUUGCU	ENSMUST00000085939.8|Fxyd6|ENSMUSG00000066705.8|FXYD domain-containing ion transport regulator 6	ENSMUST00000217381.2|Fxyd6|ENSMUSG00000066705.8|FXYD domain-containing ion transport regulator 6
mm39_v1_chr2_-_48839276_48839288	0.004888559547308786	UAUUGCU	ENSMUST00000028098.11|Orc4|ENSMUSG00000026761.13|origin recognition complex, subunit 4
mm39_v1_chr2_-_45003270_45003296	0.0048842837867867795	UAUUGCU	ENSMUST00000202935.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000068415.11|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000127520.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr6_-_47571901_47571981	0.004862183233821885	UAUUGCU	ENSMUST00000081721.13|Ezh2|ENSMUSG00000029687.17|enhancer of zeste 2 polycomb repressive complex 2 subunit	ENSMUST00000114618.8|Ezh2|ENSMUSG00000029687.17|enhancer of zeste 2 polycomb repressive complex 2 subunit	ENSMUST00000114616.8|Ezh2|ENSMUSG00000029687.17|enhancer of zeste 2 polycomb repressive complex 2 subunit
mm39_v1_chr15_-_103163860_103163879	0.004847304158215837	UAUUGCU	ENSMUST00000075192.13|Nfe2|ENSMUSG00000058794.13|nuclear factor, erythroid derived 2
mm39_v1_chr11_-_42073737_42073762	0.004843054251417143	UAUUGCU	ENSMUST00000206085.2|Gabra1|ENSMUSG00000010803.14|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	ENSMUST00000020707.12|Gabra1|ENSMUSG00000010803.14|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	ENSMUST00000132971.3|Gabra1|ENSMUSG00000010803.14|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1
mm39_v1_chr5_+_144037171_144037254	0.004816335093330895	UAUUGCU	ENSMUST00000041804.8|Lmtk2|ENSMUSG00000038970.8|lemur tyrosine kinase 2
mm39_v1_chr7_-_99276310_99276310	0.004806630463908776	UAUUGCU	ENSMUST00000178124.3|Tpbgl|ENSMUSG00000096606.3|trophoblast glycoprotein-like
mm39_v1_chr2_+_151923449_151923544	0.004799324374653443	UAUUGCU	ENSMUST00000064061.4|Scrt2|ENSMUSG00000060257.3|scratch family zinc finger 2
mm39_v1_chr6_+_88701394_88701412	0.004761550087225735	UAUUGCU	ENSMUST00000113585.9|Mgll|ENSMUSG00000033174.18|monoglyceride lipase
mm39_v1_chr1_+_171975625_171975745	0.004748976695352263	UAUUGCU	ENSMUST00000191689.6|Dcaf8|ENSMUSG00000026554.16|DDB1 and CUL4 associated factor 8	ENSMUST00000192704.6|Dcaf8|ENSMUSG00000026554.16|DDB1 and CUL4 associated factor 8	ENSMUST00000074144.11|Dcaf8|ENSMUSG00000026554.16|DDB1 and CUL4 associated factor 8
mm39_v1_chr6_+_114259596_114259777	0.004689898926405393	UAUUGCU	ENSMUST00000032454.8|Slc6a1|ENSMUSG00000030310.11|solute carrier family 6 (neurotransmitter transporter, GABA), member 1
mm39_v1_chr9_+_4309799_4309859	0.0045997549960327564	UAUUGCU	ENSMUST00000049648.9|Kbtbd3|ENSMUSG00000025893.9|kelch repeat and BTB (POZ) domain containing 3	ENSMUST00000212221.2|Kbtbd3|ENSMUSG00000025893.9|kelch repeat and BTB (POZ) domain containing 3
mm39_v1_chr11_-_3672188_3672223	0.00459634639940285	UAUUGCU	ENSMUST00000102950.10|Osbp2|ENSMUSG00000020435.18|oxysterol binding protein 2	ENSMUST00000101632.4|Osbp2|ENSMUSG00000020435.18|oxysterol binding protein 2
mm39_v1_chr1_+_104696235_104696254	0.0045789245271192144	UAUUGCU	ENSMUST00000062528.9|Cdh20|ENSMUSG00000050840.9|cadherin 20
mm39_v1_chr8_-_92039850_92039905	0.0044894490875062336	UAUUGCU	ENSMUST00000047783.14|Rpgrip1l|ENSMUSG00000033282.15|Rpgrip1-like
mm39_v1_chr19_+_59446804_59446883	0.004465861932304079	UAUUGCU	ENSMUST00000062216.4|Emx2|ENSMUSG00000043969.5|empty spiracles homeobox 2
mm39_v1_chr6_-_30304512_30304569	0.0044341682267377905	UAUUGCU	ENSMUST00000094543.3|Ube2h|ENSMUSG00000039159.17|ubiquitin-conjugating enzyme E2H	ENSMUST00000102993.10|Ube2h|ENSMUSG00000039159.17|ubiquitin-conjugating enzyme E2H
mm39_v1_chr14_-_67246282_67246326	0.004402537941958437	UAUUGCU	ENSMUST00000111115.8|Bnip3l|ENSMUSG00000022051.16|BCL2/adenovirus E1B interacting protein 3-like	ENSMUST00000022634.9|Bnip3l|ENSMUSG00000022051.16|BCL2/adenovirus E1B interacting protein 3-like
mm39_v1_chr5_-_103247920_103247954	0.004390410449017866	UAUUGCU	ENSMUST00000112848.8|Mapk10|ENSMUSG00000046709.19|mitogen-activated protein kinase 10
mm39_v1_chr17_-_25652750_25652764	0.0043738970668044	UAUUGCU	ENSMUST00000159610.8|Cacna1h|ENSMUSG00000024112.17|calcium channel, voltage-dependent, T type, alpha 1H subunit	ENSMUST00000159048.8|Cacna1h|ENSMUSG00000024112.17|calcium channel, voltage-dependent, T type, alpha 1H subunit	ENSMUST00000078496.12|Cacna1h|ENSMUSG00000024112.17|calcium channel, voltage-dependent, T type, alpha 1H subunit
mm39_v1_chr15_+_99476935_99476940	0.004359948848615318	UAUUGCU	ENSMUST00000023752.6|Aqp2|ENSMUSG00000023013.6|aquaporin 2
mm39_v1_chr6_+_63232955_63233024	0.004304964109620297	UAUUGCU	ENSMUST00000095852.5|Grid2|ENSMUSG00000071424.11|glutamate receptor, ionotropic, delta 2
mm39_v1_chr17_+_70276068_70276083	0.0042857506369768745	UAUUGCU	ENSMUST00000133983.8|Dlgap1|ENSMUSG00000003279.18|DLG associated protein 1
mm39_v1_chr7_+_63094489_63094510	0.0042830877270377075	UAUUGCU	ENSMUST00000058476.14|Otud7a|ENSMUSG00000033510.15|OTU domain containing 7A
mm39_v1_chr11_-_98220466_98220482	0.004233274619115512	UAUUGCU	ENSMUST00000041685.7|Neurod2|ENSMUSG00000038255.7|neurogenic differentiation 2
mm39_v1_chr6_+_47431254_47431359	0.004228536631362552	UAUUGCU	ENSMUST00000031697.9|Cul1|ENSMUSG00000029686.16|cullin 1	ENSMUST00000143941.3|Cul1|ENSMUSG00000029686.16|cullin 1
mm39_v1_chr9_+_35122451_35122520	0.0042135775966519635	UAUUGCU	ENSMUST00000034541.12|Srpr|ENSMUSG00000032042.12|signal recognition particle receptor ('docking protein')
mm39_v1_chr19_+_25649767_25649789	0.0042097426032226964	UAUUGCU	ENSMUST00000053068.7|Dmrt2|ENSMUSG00000048138.11|doublesex and mab-3 related transcription factor 2
mm39_v1_chr4_+_57637817_57637845	0.004192154300232074	UAUUGCU	ENSMUST00000150412.4|Pakap|ENSMUSG00000089945.14|paralemmin A kinase anchor protein
mm39_v1_chr5_+_67417908_67418054	0.004149557941534548	UAUUGCU	ENSMUST00000037918.12|Tmem33|ENSMUSG00000037720.17|transmembrane protein 33	ENSMUST00000162543.8|Tmem33|ENSMUSG00000037720.17|transmembrane protein 33	ENSMUST00000161233.8|Tmem33|ENSMUSG00000037720.17|transmembrane protein 33	ENSMUST00000160352.8|Tmem33|ENSMUSG00000037720.17|transmembrane protein 33
mm39_v1_chr5_-_114829032_114829058	0.004128439048459172	UAUUGCU	ENSMUST00000012028.14|Gltp|ENSMUSG00000011884.14|glycolipid transfer protein
mm39_v1_chr14_+_9646630_9646731	0.004051321233124653	UAUUGCU	ENSMUST00000112658.8|Cadps|ENSMUSG00000054423.15|Ca2+-dependent secretion activator	ENSMUST00000112657.9|Cadps|ENSMUSG00000054423.15|Ca2+-dependent secretion activator	ENSMUST00000177814.2|Cadps|ENSMUSG00000054423.15|Ca2+-dependent secretion activator	ENSMUST00000067491.14|Cadps|ENSMUSG00000054423.15|Ca2+-dependent secretion activator
mm39_v1_chr2_+_180224505_180224535	0.004041415088049943	UAUUGCU	ENSMUST00000029085.9|Mrgbp|ENSMUSG00000027569.16|MRG/MORF4L binding protein
mm39_v1_chr1_-_51955126_51955230	0.0039824153323759545	UAUUGCU	ENSMUST00000046390.14|Myo1b|ENSMUSG00000018417.15|myosin IB
mm39_v1_chr4_+_118285275_118285392	0.0039780852572839425	UAUUGCU	ENSMUST00000006557.13|Elovl1|ENSMUSG00000006390.16|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	ENSMUST00000167636.8|Elovl1|ENSMUSG00000006390.16|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	ENSMUST00000102673.11|Elovl1|ENSMUSG00000006390.16|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1
mm39_v1_chr7_-_115637970_115637985	0.003964632117126341	UAUUGCU	ENSMUST00000166877.8|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr16_-_10360893_10360928	0.003959186501929673	UAUUGCU	ENSMUST00000184863.8|Dexi|ENSMUSG00000038055.13|dexamethasone-induced transcript	ENSMUST00000038281.6|Dexi|ENSMUSG00000038055.13|dexamethasone-induced transcript
mm39_v1_chr1_-_25267894_25267916	0.003958188648658612	UAUUGCU	ENSMUST00000126626.8|Adgrb3|ENSMUSG00000033569.18|adhesion G protein-coupled receptor B3
mm39_v1_chr1_-_3741721_3741721	0.003926853179854431	UAUUGCU	ENSMUST00000070533.5|Xkr4|ENSMUSG00000051951.6|X-linked Kx blood group related 4
mm39_v1_chr3_+_133942244_133942261	0.0038747078242084973	UAUUGCU	ENSMUST00000181904.3|Cxxc4|ENSMUSG00000044365.16|CXXC finger 4
mm39_v1_chr4_+_130297132_130297245	0.0037791754982589246	UAUUGCU	ENSMUST00000105993.4|Nkain1|ENSMUSG00000078532.10|Na+/K+ transporting ATPase interacting 1
mm39_v1_chr2_+_55327110_55327194	0.00377245436624691	UAUUGCU	ENSMUST00000112633.3|Kcnj3|ENSMUSG00000026824.12|potassium inwardly-rectifying channel, subfamily J, member 3	ENSMUST00000112632.2|Kcnj3|ENSMUSG00000026824.12|potassium inwardly-rectifying channel, subfamily J, member 3
mm39_v1_chr15_-_93493758_93493795	0.0037559135185207385	UAUUGCU	ENSMUST00000048982.11|Prickle1|ENSMUSG00000036158.13|prickle planar cell polarity protein 1
mm39_v1_chr2_+_21372338_21372353	0.003735417146017007	UAUUGCU	ENSMUST00000055946.8|Gpr158|ENSMUSG00000045967.12|G protein-coupled receptor 158
mm39_v1_chr7_+_4795873_4796026	0.00373520185030427	UAUUGCU	ENSMUST00000032597.12|Rpl28|ENSMUSG00000030432.13|ribosomal protein L28	ENSMUST00000078432.5|Rpl28|ENSMUSG00000030432.13|ribosomal protein L28
mm39_v1_chr5_-_144902598_144902687	0.0037212302669566	UAUUGCU	ENSMUST00000110677.8|Smurf1|ENSMUSG00000038780.15|SMAD specific E3 ubiquitin protein ligase 1	ENSMUST00000085684.11|Smurf1|ENSMUSG00000038780.15|SMAD specific E3 ubiquitin protein ligase 1	ENSMUST00000100461.7|Smurf1|ENSMUSG00000038780.15|SMAD specific E3 ubiquitin protein ligase 1
mm39_v1_chr11_+_75478890_75478968	0.003719732984058621	UAUUGCU	ENSMUST00000143219.8|Pitpna|ENSMUSG00000017781.18|phosphatidylinositol transfer protein, alpha	ENSMUST00000179521.8|Pitpna|ENSMUSG00000017781.18|phosphatidylinositol transfer protein, alpha	ENSMUST00000179445.8|Pitpna|ENSMUSG00000017781.18|phosphatidylinositol transfer protein, alpha
mm39_v1_chr15_+_88943916_88943987	0.003679736589222628	UAUUGCU	ENSMUST00000161372.2|Panx2|ENSMUSG00000058441.8|pannexin 2	ENSMUST00000162424.2|Panx2|ENSMUSG00000058441.8|pannexin 2
mm39_v1_chr14_+_4198620_4198631	0.003667219728442649	UAUUGCU	ENSMUST00000080281.14|Rpl15|ENSMUSG00000012405.17|ribosomal protein L15
mm39_v1_chr11_+_54194624_54194670	0.0036246434392852556	UAUUGCU	ENSMUST00000093106.12|Acsl6|ENSMUSG00000020333.18|acyl-CoA synthetase long-chain family member 6
mm39_v1_chrX_-_87159237_87159281	0.003558795738946082	UAUUGCU	ENSMUST00000113966.8|Il1rapl1|ENSMUSG00000052372.11|interleukin 1 receptor accessory protein-like 1	ENSMUST00000113964.2|Il1rapl1|ENSMUSG00000052372.11|interleukin 1 receptor accessory protein-like 1
mm39_v1_chr19_+_22425565_22425596	0.0035551915070061754	UAUUGCU	ENSMUST00000037901.14|Trpm3|ENSMUSG00000052387.17|transient receptor potential cation channel, subfamily M, member 3
mm39_v1_chr1_-_65218217_65218340	0.0035326741093501712	UAUUGCU	ENSMUST00000097709.11|Idh1|ENSMUSG00000025950.17|isocitrate dehydrogenase 1 (NADP+), soluble
mm39_v1_chr12_+_34007645_34007670	0.003527372482796096	UAUUGCU	ENSMUST00000049089.7|Twist1|ENSMUSG00000035799.7|twist basic helix-loop-helix transcription factor 1
mm39_v1_chr6_+_36364990_36365019	0.003526601806613846	UAUUGCU	ENSMUST00000172278.8|Chrm2|ENSMUSG00000045613.10|cholinergic receptor, muscarinic 2, cardiac
mm39_v1_chr15_-_96953823_96953845	0.0035103202143648028	UAUUGCU	ENSMUST00000023101.10|Slc38a4|ENSMUSG00000022464.15|solute carrier family 38, member 4
mm39_v1_chr11_-_65053710_65053806	0.0034987461486437736	UAUUGCU	ENSMUST00000093002.12|Arhgap44|ENSMUSG00000033389.17|Rho GTPase activating protein 44	ENSMUST00000047463.15|Arhgap44|ENSMUSG00000033389.17|Rho GTPase activating protein 44
mm39_v1_chr5_-_116162415_116162567	0.0034835556315318053	UAUUGCU	ENSMUST00000031486.14|Prkab1|ENSMUSG00000029513.15|protein kinase, AMP-activated, beta 1 non-catalytic subunit	ENSMUST00000111999.8|Prkab1|ENSMUSG00000029513.15|protein kinase, AMP-activated, beta 1 non-catalytic subunit
mm39_v1_chr2_+_121859025_121859137	0.0034803647665641764	UAUUGCU	ENSMUST00000028668.8|Eif3j1|ENSMUSG00000027236.9|eukaryotic translation initiation factor 3, subunit J1
mm39_v1_chr5_+_115644727_115644915	0.003475965930093077	UAUUGCU	ENSMUST00000067268.15|Pxn|ENSMUSG00000029528.20|paxillin	ENSMUST00000086523.7|Pxn|ENSMUSG00000029528.20|paxillin	ENSMUST00000212819.3|Pxn|ENSMUSG00000029528.20|paxillin
mm39_v1_chr5_+_86952072_86952135	0.00345595624569148	UAUUGCU	ENSMUST00000119339.8|Ythdc1|ENSMUSG00000035851.15|YTH domain containing 1	ENSMUST00000120498.8|Ythdc1|ENSMUSG00000035851.15|YTH domain containing 1
mm39_v1_chr2_-_66240408_66240478	0.003419063048856771	UAUUGCU	ENSMUST00000112366.8|Scn1a|ENSMUSG00000064329.14|sodium channel, voltage-gated, type I, alpha
mm39_v1_chr9_+_45341589_45341677	0.0033819821103030522	UAUUGCU	ENSMUST00000239471.2|Dscaml1|ENSMUSG00000032087.12|DS cell adhesion molecule like 1	ENSMUST00000034592.11|Dscaml1|ENSMUSG00000032087.12|DS cell adhesion molecule like 1	ENSMUST00000239429.2|Dscaml1|ENSMUSG00000032087.12|DS cell adhesion molecule like 1
mm39_v1_chr6_-_18514801_18514859	0.00334429598978741	UAUUGCU	ENSMUST00000090601.12|Cttnbp2|ENSMUSG00000000416.17|cortactin binding protein 2
mm39_v1_chr10_-_120815232_120815279	0.003284179117236256	UAUUGCU	ENSMUST00000119944.8|Lemd3|ENSMUSG00000048661.15|LEM domain containing 3	ENSMUST00000119093.2|Lemd3|ENSMUSG00000048661.15|LEM domain containing 3
mm39_v1_chr3_-_72965136_72965136	0.003270806577721213	UAUUGCU	ENSMUST00000059407.9|Slitrk3|ENSMUSG00000048304.9|SLIT and NTRK-like family, member 3
mm39_v1_chr2_+_61634797_61634890	0.003225707994493263	UAUUGCU	ENSMUST00000048934.15|Tbr1|ENSMUSG00000035033.16|T-box brain transcription factor 1
mm39_v1_chr4_+_53440516_53440684	0.0032216912369436306	UAUUGCU	ENSMUST00000107651.9|Slc44a1|ENSMUSG00000028412.18|solute carrier family 44, member 1	ENSMUST00000107647.8|Slc44a1|ENSMUSG00000028412.18|solute carrier family 44, member 1
mm39_v1_chr2_-_6889783_6889807	0.003184868002014536	UAUUGCU	ENSMUST00000170438.8|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000114924.10|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000114934.11|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2
mm39_v1_chrX_+_139565657_139565821	0.0031581245831234688	UAUUGCU	ENSMUST00000112990.8|Mid2|ENSMUSG00000000266.12|midline 2	ENSMUST00000112988.8|Mid2|ENSMUSG00000000266.12|midline 2
mm39_v1_chr7_+_120633639_120633668	0.0031435670462227794	UAUUGCU	ENSMUST00000033163.8|Mettl9|ENSMUSG00000030876.8|methyltransferase like 9
mm39_v1_chr8_+_72914966_72915044	0.003107867568948948	UAUUGCU	ENSMUST00000003121.9|Rab8a|ENSMUSG00000003037.17|RAB8A, member RAS oncogene family
mm39_v1_chr7_+_106969950_106970053	0.0030733173892300908	UAUUGCU	ENSMUST00000073459.12|Syt9|ENSMUSG00000062542.12|synaptotagmin IX
mm39_v1_chr19_+_25587896_25587919	0.0030525188828874677	UAUUGCU	ENSMUST00000048935.6|Dmrt3|ENSMUSG00000042372.6|doublesex and mab-3 related transcription factor 3
mm39_v1_chr8_+_84379298_84379341	0.003030423856812845	UAUUGCU	ENSMUST00000019577.10|Gipc1|ENSMUSG00000019433.10|GIPC PDZ domain containing family, member 1	ENSMUST00000211985.2|Gipc1|ENSMUSG00000019433.10|GIPC PDZ domain containing family, member 1	ENSMUST00000212463.2|Gipc1|ENSMUSG00000019433.10|GIPC PDZ domain containing family, member 1
mm39_v1_chr19_+_8906916_8906945	0.0030130680512682204	UAUUGCU	ENSMUST00000096241.6|Eml3|ENSMUSG00000071647.6|echinoderm microtubule associated protein like 3
mm39_v1_chr10_-_80861239_80861246	0.002977833876123341	UAUUGCU	ENSMUST00000055125.5|Diras1|ENSMUSG00000043670.5|DIRAS family, GTP-binding RAS-like 1
mm39_v1_chr11_+_56902624_56902653	0.0029649603158501286	UAUUGCU	ENSMUST00000036315.16|Gria1|ENSMUSG00000020524.17|glutamate receptor, ionotropic, AMPA1 (alpha 1)
mm39_v1_chr11_-_94364914_94365024	0.002944492095183752	UAUUGCU	ENSMUST00000107786.8|Cacna1g|ENSMUSG00000020866.18|calcium channel, voltage-dependent, T type, alpha 1G subunit	ENSMUST00000107791.8|Cacna1g|ENSMUSG00000020866.18|calcium channel, voltage-dependent, T type, alpha 1G subunit	ENSMUST00000103166.9|Cacna1g|ENSMUSG00000020866.18|calcium channel, voltage-dependent, T type, alpha 1G subunit	ENSMUST00000107792.8|Cacna1g|ENSMUSG00000020866.18|calcium channel, voltage-dependent, T type, alpha 1G subunit	ENSMUST00000100561.10|Cacna1g|ENSMUSG00000020866.18|calcium channel, voltage-dependent, T type, alpha 1G subunit	ENSMUST00000107793.8|Cacna1g|ENSMUSG00000020866.18|calcium channel, voltage-dependent, T type, alpha 1G subunit	ENSMUST00000107788.8|Cacna1g|ENSMUSG00000020866.18|calcium channel, voltage-dependent, T type, alpha 1G subunit	ENSMUST00000107790.8|Cacna1g|ENSMUSG00000020866.18|calcium channel, voltage-dependent, T type, alpha 1G subunit	ENSMUST00000107789.8|Cacna1g|ENSMUSG00000020866.18|calcium channel, voltage-dependent, T type, alpha 1G subunit	ENSMUST00000107785.2|Cacna1g|ENSMUSG00000020866.18|calcium channel, voltage-dependent, T type, alpha 1G subunit	ENSMUST00000021234.15|Cacna1g|ENSMUSG00000020866.18|calcium channel, voltage-dependent, T type, alpha 1G subunit
mm39_v1_chr19_+_36532061_36532115	0.002902425814557695	UAUUGCU	ENSMUST00000169036.9|Hectd2|ENSMUSG00000041180.14|HECT domain E3 ubiquitin protein ligase 2	ENSMUST00000047247.12|Hectd2|ENSMUSG00000041180.14|HECT domain E3 ubiquitin protein ligase 2
mm39_v1_chrX_+_104807868_104807885	0.002865860029967125	UAUUGCU	ENSMUST00000033581.4|Fgf16|ENSMUSG00000031230.4|fibroblast growth factor 16
mm39_v1_chr13_-_12121831_12121871	0.0028645932288531295	UAUUGCU	ENSMUST00000021750.15|Ryr2|ENSMUSG00000021313.17|ryanodine receptor 2, cardiac	ENSMUST00000170156.3|Ryr2|ENSMUSG00000021313.17|ryanodine receptor 2, cardiac	ENSMUST00000220597.2|Ryr2|ENSMUSG00000021313.17|ryanodine receptor 2, cardiac
mm39_v1_chr5_+_119808890_119808927	0.002855465912286368	UAUUGCU	ENSMUST00000121021.8|Tbx3|ENSMUSG00000018604.19|T-box 3
mm39_v1_chr5_-_34345014_34345083	0.0028101090019266883	UAUUGCU	ENSMUST00000042701.13|Mxd4|ENSMUSG00000037235.14|Max dimerization protein 4	ENSMUST00000119171.2|Mxd4|ENSMUSG00000037235.14|Max dimerization protein 4
mm39_v1_chr15_+_40518414_40518450	0.0028001557014607293	UAUUGCU	ENSMUST00000053467.6|Zfpm2|ENSMUSG00000022306.10|zinc finger protein, multitype 2
mm39_v1_chr9_-_25063068_25063136	0.0027937723976761046	UAUUGCU	ENSMUST00000008573.9|Herpud2|ENSMUSG00000008429.9|HERPUD family member 2
mm39_v1_chr11_-_47270201_47270349	0.0027799148799938396	UAUUGCU	ENSMUST00000077221.6|Sgcd|ENSMUSG00000020354.16|sarcoglycan, delta (dystrophin-associated glycoprotein)
mm39_v1_chr7_+_78922947_78922973	0.002777197699668578	UAUUGCU	ENSMUST00000037315.13|Abhd2|ENSMUSG00000039202.13|abhydrolase domain containing 2
mm39_v1_chr9_-_86762467_86762520	0.0027651839596409206	UAUUGCU	ENSMUST00000074501.12|Snap91|ENSMUSG00000033419.17|synaptosomal-associated protein 91	ENSMUST00000239074.2|Snap91|ENSMUSG00000033419.17|synaptosomal-associated protein 91	ENSMUST00000098495.10|Snap91|ENSMUSG00000033419.17|synaptosomal-associated protein 91	ENSMUST00000036347.13|Snap91|ENSMUSG00000033419.17|synaptosomal-associated protein 91	ENSMUST00000074468.13|Snap91|ENSMUSG00000033419.17|synaptosomal-associated protein 91
mm39_v1_chr3_+_137046828_137046916	0.0027432892848246997	UAUUGCU	ENSMUST00000122064.8|Emcn|ENSMUSG00000054690.18|endomucin	ENSMUST00000119475.6|Emcn|ENSMUSG00000054690.18|endomucin
mm39_v1_chr19_-_46136765_46136825	0.002719333294744175	UAUUGCU	ENSMUST00000026259.16|Pitx3|ENSMUSG00000025229.16|paired-like homeodomain transcription factor 3
mm39_v1_chr1_-_190711151_190711199	0.0026771936612388194	UAUUGCU	ENSMUST00000047409.9|Vash2|ENSMUSG00000037568.13|vasohibin 2
mm39_v1_chr4_-_126215462_126215497	0.002644760850737442	UAUUGCU	ENSMUST00000102617.5|Adprs|ENSMUSG00000042558.17|ADP-ribosylserine hydrolase
mm39_v1_chr2_+_74512638_74512670	0.0026425958869071976	UAUUGCU	ENSMUST00000142312.3|Hoxd11|ENSMUSG00000042499.14|homeobox D11
mm39_v1_chr10_-_81332163_81332226	0.0025990148532345956	UAUUGCU	ENSMUST00000020463.14|Ncln|ENSMUSG00000020238.15|nicalin
mm39_v1_chr6_-_122463422_122463515	0.0025870336906465645	UAUUGCU	ENSMUST00000068242.9|Rimklb|ENSMUSG00000040649.16|ribosomal modification protein rimK-like family member B
mm39_v1_chr15_+_87509413_87509434	0.002482921105888915	UAUUGCU	ENSMUST00000068088.8|Tafa5|ENSMUSG00000054863.10|TAFA chemokine like family member 5
mm39_v1_chr8_+_24159669_24159690	0.002468147656692949	UAUUGCU	ENSMUST00000042352.11|Zmat4|ENSMUSG00000037492.17|zinc finger, matrin type 4	ENSMUST00000207301.2|Zmat4|ENSMUSG00000037492.17|zinc finger, matrin type 4
mm39_v1_chr4_+_19280850_19280908	0.0024585664490383618	UAUUGCU	ENSMUST00000102999.2|Cngb3|ENSMUSG00000056494.8|cyclic nucleotide gated channel beta 3
mm39_v1_chr12_+_29578354_29578468	0.00239875856578657	UAUUGCU	ENSMUST00000218583.2|Myt1l|ENSMUSG00000061911.16|myelin transcription factor 1-like	ENSMUST00000049784.17|Myt1l|ENSMUSG00000061911.16|myelin transcription factor 1-like
mm39_v1_chr6_-_126621751_126621768	0.0023868277387196816	UAUUGCU	ENSMUST00000055168.5|Kcna1|ENSMUSG00000047976.5|potassium voltage-gated channel, shaker-related subfamily, member 1
mm39_v1_chr13_-_41373870_41373889	0.0023774773431667518	UAUUGCU	ENSMUST00000021793.15|Elovl2|ENSMUSG00000021364.17|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2
mm39_v1_chr15_-_26895660_26895675	0.0023351501330554276	UAUUGCU	ENSMUST00000059204.11|Fbxl7|ENSMUSG00000043556.11|F-box and leucine-rich repeat protein 7
mm39_v1_chr3_-_18297451_18297512	0.0023343133926517286	UAUUGCU	ENSMUST00000035625.7|Cyp7b1|ENSMUSG00000039519.7|cytochrome P450, family 7, subfamily b, polypeptide 1
mm39_v1_chr1_-_126758369_126758515	0.0023334111560420435	UAUUGCU	ENSMUST00000112583.8|Nckap5|ENSMUSG00000049690.16|NCK-associated protein 5	ENSMUST00000094609.10|Nckap5|ENSMUSG00000049690.16|NCK-associated protein 5
mm39_v1_chr10_-_128481833_128481881	0.002249952989660385	UAUUGCU	ENSMUST00000133342.10|Ikzf4|ENSMUSG00000002578.19|IKAROS family zinc finger 4
mm39_v1_chr8_-_91074971_91075014	0.0022409863906714092	UAUUGCU	ENSMUST00000109621.10|Tox3|ENSMUSG00000043668.14|TOX high mobility group box family member 3
mm39_v1_chr13_+_88969591_88969639	0.002236731485718081	UAUUGCU	ENSMUST00000118731.8|Edil3|ENSMUSG00000034488.15|EGF-like repeats and discoidin I-like domains 3	ENSMUST00000081769.13|Edil3|ENSMUSG00000034488.15|EGF-like repeats and discoidin I-like domains 3
mm39_v1_chr4_-_87148672_87148714	0.0022317040986416605	UAUUGCU	ENSMUST00000107157.9|Slc24a2|ENSMUSG00000037996.18|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm39_v1_chr19_+_56710570_56710631	0.002207122022454845	UAUUGCU	ENSMUST00000038949.6|Adrb1|ENSMUSG00000035283.6|adrenergic receptor, beta 1
mm39_v1_chr5_-_51711237_51711264	0.0022023439741265887	UAUUGCU	ENSMUST00000132734.8|Ppargc1a|ENSMUSG00000029167.14|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm39_v1_chr2_+_52747855_52747880	0.0021542764849036495	UAUUGCU	ENSMUST00000155586.9|Fmnl2|ENSMUSG00000036053.18|formin-like 2	ENSMUST00000090952.11|Fmnl2|ENSMUSG00000036053.18|formin-like 2	ENSMUST00000127122.9|Fmnl2|ENSMUSG00000036053.18|formin-like 2	ENSMUST00000049483.14|Fmnl2|ENSMUSG00000036053.18|formin-like 2	ENSMUST00000050719.13|Fmnl2|ENSMUSG00000036053.18|formin-like 2
mm39_v1_chr11_-_93859064_93859119	0.0021470969582414188	UAUUGCU	ENSMUST00000107844.3|Nme1|ENSMUSG00000037601.12|NME/NM23 nucleoside diphosphate kinase 1	ENSMUST00000170303.2|Gm20390|ENSMUSG00000091228.2|predicted gene 20390
mm39_v1_chr7_-_25516041_25516078	0.002105963805068291	UAUUGCU	ENSMUST00000043314.10|Cyp2s1|ENSMUSG00000040703.12|cytochrome P450, family 2, subfamily s, polypeptide 1
mm39_v1_chr5_+_34493633_34493739	0.0020872154227821525	UAUUGCU	ENSMUST00000182709.8|Rnf4|ENSMUSG00000029110.14|ring finger protein 4	ENSMUST00000030992.13|Rnf4|ENSMUSG00000029110.14|ring finger protein 4
mm39_v1_chr8_+_88845375_88845405	0.002042235389900371	UAUUGCU	ENSMUST00000095214.10|Cnep1r1|ENSMUSG00000036810.17|CTD nuclear envelope phosphatase 1 regulatory subunit 1
mm39_v1_chr15_+_102898966_102899039	0.002017840706352707	UAUUGCU	ENSMUST00000001703.8|Hoxc8|ENSMUSG00000001657.8|homeobox C8
mm39_v1_chr6_+_149310471_149310593	0.0020136803077939196	UAUUGCU	ENSMUST00000086829.11|Bicd1|ENSMUSG00000003452.16|BICD cargo adaptor 1	ENSMUST00000111513.9|Bicd1|ENSMUSG00000003452.16|BICD cargo adaptor 1
mm39_v1_chr5_+_64317550_64317564	0.0020092860885262574	UAUUGCU	ENSMUST00000101195.9|Tbc1d1|ENSMUSG00000029174.19|TBC1 domain family, member 1
mm39_v1_chr2_-_79959178_79959339	0.001957778769365475	UAUUGCU	ENSMUST00000102654.11|Pde1a|ENSMUSG00000059173.20|phosphodiesterase 1A, calmodulin-dependent	ENSMUST00000102655.10|Pde1a|ENSMUSG00000059173.20|phosphodiesterase 1A, calmodulin-dependent
mm39_v1_chr16_+_13804461_13804538	0.001957419950753543	UAUUGCU	ENSMUST00000056521.12|Bmerb1|ENSMUSG00000044117.13|bMERB domain containing 1	ENSMUST00000118412.8|Bmerb1|ENSMUSG00000044117.13|bMERB domain containing 1	ENSMUST00000131608.2|Bmerb1|ENSMUSG00000044117.13|bMERB domain containing 1
mm39_v1_chr3_-_89230190_89230272	0.0019547437050435137	UAUUGCU	ENSMUST00000200436.2|Efna3|ENSMUSG00000028039.12|ephrin A3	ENSMUST00000029673.10|Efna3|ENSMUSG00000028039.12|ephrin A3
mm39_v1_chr8_-_17585263_17585335	0.0019492156817893212	UAUUGCU	ENSMUST00000082104.7|Csmd1|ENSMUSG00000060924.16|CUB and Sushi multiple domains 1
mm39_v1_chr4_-_136684082_136684176	0.0019448157010015822	UAUUGCU	ENSMUST00000030420.9|Epha8|ENSMUSG00000028661.9|Eph receptor A8
mm39_v1_chr4_+_9844349_9844372	0.0019176582053223427	UAUUGCU	ENSMUST00000057613.3|Gdf6|ENSMUSG00000051279.3|growth differentiation factor 6
mm39_v1_chr3_-_36744269_36744319	0.0018875345243075737	UAUUGCU	ENSMUST00000029271.5|Trpc3|ENSMUSG00000027716.14|transient receptor potential cation channel, subfamily C, member 3
mm39_v1_chr13_+_43938251_43938251	0.0018492444015887136	UAUUGCU	ENSMUST00000015540.4|Cd83|ENSMUSG00000015396.5|CD83 antigen
mm39_v1_chr15_-_101759212_101759229	0.0018303360532949031	UAUUGCU	ENSMUST00000023790.5|Krt1|ENSMUSG00000046834.8|keratin 1
mm39_v1_chr4_+_149569717_149569764	0.0018106844940106773	UAUUGCU	ENSMUST00000030842.8|Lzic|ENSMUSG00000028990.14|leucine zipper and CTNNBIP1 domain containing
mm39_v1_chr10_-_108846816_108846844	0.0017978156208747764	UAUUGCU	ENSMUST00000105276.8|Syt1|ENSMUSG00000035864.15|synaptotagmin I	ENSMUST00000064054.14|Syt1|ENSMUSG00000035864.15|synaptotagmin I
mm39_v1_chr2_+_81883566_81883655	0.0017977095661018496	UAUUGCU	ENSMUST00000047527.8|Zfp804a|ENSMUSG00000070866.5|zinc finger protein 804A
mm39_v1_chr10_+_79690452_79690476	0.0017678132422465989	UAUUGCU	ENSMUST00000165704.8|Ptbp1|ENSMUSG00000006498.17|polypyrimidine tract binding protein 1
mm39_v1_chr12_-_87346479_87346479	0.0017567432134695854	UAUUGCU	ENSMUST00000125733.8|Ism2|ENSMUSG00000050671.13|isthmin 2
mm39_v1_chr11_-_21320452_21320486	0.001754392325334332	UAUUGCU	ENSMUST00000102875.11|Ugp2|ENSMUSG00000001891.17|UDP-glucose pyrophosphorylase 2
mm39_v1_chr16_-_31898088_31898178	0.0017040711909086595	UAUUGCU	ENSMUST00000023467.9|Pak2|ENSMUSG00000022781.9|p21 (RAC1) activated kinase 2
mm39_v1_chr5_+_67125759_67125790	0.0016820450315121747	UAUUGCU	ENSMUST00000238993.2|Limch1|ENSMUSG00000037736.21|LIM and calponin homology domains 1	ENSMUST00000038188.14|Limch1|ENSMUSG00000037736.21|LIM and calponin homology domains 1
mm39_v1_chr1_+_59952131_59952186	0.001672343306716341	UAUUGCU	ENSMUST00000036540.12|Fam117b|ENSMUSG00000041040.13|family with sequence similarity 117, member B
mm39_v1_chr9_-_107486381_107486446	0.0016251819762384693	UAUUGCU	ENSMUST00000102531.7|Sema3b|ENSMUSG00000057969.16|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	ENSMUST00000102530.8|Sema3b|ENSMUSG00000057969.16|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	ENSMUST00000195057.2|Sema3b|ENSMUSG00000057969.16|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	ENSMUST00000102532.10|Sema3b|ENSMUSG00000057969.16|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
mm39_v1_chr8_-_39128662_39128699	0.0016217253017251868	UAUUGCU	ENSMUST00000118896.2|Sgcz|ENSMUSG00000039539.14|sarcoglycan zeta
mm39_v1_chr18_-_58343423_58343559	0.0015797587278561051	UAUUGCU	ENSMUST00000025497.8|Fbn2|ENSMUSG00000024598.10|fibrillin 2
mm39_v1_chr4_-_25800083_25800146	0.001574053722525958	UAUUGCU	ENSMUST00000084770.5|Fut9|ENSMUSG00000055373.9|fucosyltransferase 9
mm39_v1_chr14_+_70768257_70768287	0.001556800339318802	UAUUGCU	ENSMUST00000047331.8|Lgi3|ENSMUSG00000033595.8|leucine-rich repeat LGI family, member 3
mm39_v1_chr2_+_74522258_74522284	0.0015083336322473577	UAUUGCU	ENSMUST00000061745.5|Hoxd10|ENSMUSG00000050368.5|homeobox D10
mm39_v1_chr3_-_116047148_116047155	0.0014675223907894526	UAUUGCU	ENSMUST00000090473.7|Gpr88|ENSMUSG00000068696.7|G-protein coupled receptor 88
mm39_v1_chr15_-_37961303_37961351	0.0014609390110004465	UAUUGCU	ENSMUST00000022901.16|Rrm2b|ENSMUSG00000022292.17|ribonucleotide reductase M2 B (TP53 inducible)
mm39_v1_chr6_-_29179583_29179583	0.0014394649412131678	UAUUGCU	ENSMUST00000159200.2|Prrt4|ENSMUSG00000079654.4|proline-rich transmembrane protein 4
mm39_v1_chr4_+_136197066_136197161	0.0013528843032077015	UAUUGCU	ENSMUST00000170102.8|Luzp1|ENSMUSG00000001089.15|leucine zipper protein 1	ENSMUST00000105849.9|Luzp1|ENSMUSG00000001089.15|leucine zipper protein 1	ENSMUST00000129230.3|Luzp1|ENSMUSG00000001089.15|leucine zipper protein 1
mm39_v1_chr11_+_33996920_33996958	0.0013416648880469522	UAUUGCU	ENSMUST00000052413.12|Lcp2|ENSMUSG00000002699.14|lymphocyte cytosolic protein 2
mm39_v1_chr18_+_51250748_51250822	0.0012992663660950877	UAUUGCU	ENSMUST00000116639.4|Prr16|ENSMUSG00000073565.6|proline rich 16
mm39_v1_chr1_-_38937061_38937091	0.0012970548194407927	UAUUGCU	ENSMUST00000027249.12|Chst10|ENSMUSG00000026080.14|carbohydrate sulfotransferase 10
mm39_v1_chr2_-_31973795_31973808	0.0012760199583227419	UAUUGCU	ENSMUST00000056406.7|Fam78a|ENSMUSG00000050592.9|family with sequence similarity 78, member A
mm39_v1_chr16_-_16377982_16378114	0.001225118553299282	UAUUGCU	ENSMUST00000161861.8|Fgd4|ENSMUSG00000022788.17|FYVE, RhoGEF and PH domain containing 4
mm39_v1_chr9_-_106533279_106533295	0.0011750818577994549	UAUUGCU	ENSMUST00000023959.13|Grm2|ENSMUSG00000023192.13|glutamate receptor, metabotropic 2	ENSMUST00000201681.2|Grm2|ENSMUSG00000023192.13|glutamate receptor, metabotropic 2
mm39_v1_chr2_+_149672708_149672727	0.0011750577373622136	UAUUGCU	ENSMUST00000109935.8|Syndig1|ENSMUSG00000074736.11|synapse differentiation inducing 1
mm39_v1_chr9_-_83028523_83028642	0.0011075121486730862	UAUUGCU	ENSMUST00000187193.7|Hmgn3|ENSMUSG00000066456.15|high mobility group nucleosomal binding domain 3	ENSMUST00000185315.7|Hmgn3|ENSMUSG00000066456.15|high mobility group nucleosomal binding domain 3
mm39_v1_chr3_+_18108313_18108338	0.0010982705547752656	UAUUGCU	ENSMUST00000026120.8|Bhlhe22|ENSMUSG00000025128.8|basic helix-loop-helix family, member e22
mm39_v1_chr4_+_100926170_100926185	0.001057073964607385	UAUUGCU	ENSMUST00000106955.2|Raver2|ENSMUSG00000035275.15|ribonucleoprotein, PTB-binding 2	ENSMUST00000038463.15|Raver2|ENSMUSG00000035275.15|ribonucleoprotein, PTB-binding 2
mm39_v1_chr10_+_43354807_43354859	0.001055758239802186	UAUUGCU	ENSMUST00000167488.9|Bend3|ENSMUSG00000038214.16|BEN domain containing 3
mm39_v1_chrX_-_140508177_140508259	0.0010398348447618528	UAUUGCU	ENSMUST00000067841.8|Irs4|ENSMUSG00000054667.8|insulin receptor substrate 4
mm39_v1_chr3_-_80820835_80820975	0.0010317872961837862	UAUUGCU	ENSMUST00000107743.8|Glrb|ENSMUSG00000028020.17|glycine receptor, beta subunit	ENSMUST00000029654.15|Glrb|ENSMUSG00000028020.17|glycine receptor, beta subunit
mm39_v1_chr16_-_37205277_37205293	0.0009911460895619243	UAUUGCU	ENSMUST00000114787.8|Stxbp5l|ENSMUSG00000022829.15|syntaxin binding protein 5-like	ENSMUST00000114782.8|Stxbp5l|ENSMUSG00000022829.15|syntaxin binding protein 5-like	ENSMUST00000114775.8|Stxbp5l|ENSMUSG00000022829.15|syntaxin binding protein 5-like
mm39_v1_chr9_-_107556823_107556911	0.0009091233654654076	UAUUGCU	ENSMUST00000010205.9|Gnat1|ENSMUSG00000034837.13|guanine nucleotide binding protein, alpha transducing 1
mm39_v1_chr9_-_21913833_21913894	0.0009032400004632893	UAUUGCU	ENSMUST00000115336.10|Odad3|ENSMUSG00000039632.14|outer dynein arm docking complex subunit 3
mm39_v1_chr4_+_57845240_57845265	0.000890608549236581	UAUUGCU	ENSMUST00000102903.8|Pakap|ENSMUSG00000038729.25|paralemmin A kinase anchor protein	ENSMUST00000107598.9|Pakap|ENSMUSG00000038729.25|paralemmin A kinase anchor protein
mm39_v1_chr6_-_91388345_91388355	0.0008746124816745522	UAUUGCU	ENSMUST00000032180.7|Wnt7a|ENSMUSG00000030093.8|wingless-type MMTV integration site family, member 7A
mm39_v1_chr7_-_141009264_141009339	0.0008419739785433482	UAUUGCU	ENSMUST00000164387.2|Cend1|ENSMUSG00000060240.13|cell cycle exit and neuronal differentiation 1	ENSMUST00000137488.2|Cend1|ENSMUSG00000060240.13|cell cycle exit and neuronal differentiation 1	ENSMUST00000084436.10|Cend1|ENSMUSG00000060240.13|cell cycle exit and neuronal differentiation 1
mm39_v1_chr18_-_77801624_77801673	0.0008354722985759818	UAUUGCU	ENSMUST00000074653.6|8030462N17Rik|ENSMUSG00000047466.11|RIKEN cDNA 8030462N17 gene
mm39_v1_chr4_-_43669141_43669200	0.000812507760924043	UAUUGCU	ENSMUST00000056474.7|Fam221b|ENSMUSG00000043633.7|family with sequence similarity 221, member B
mm39_v1_chr7_+_46045862_46045961	0.0007976219066985953	UAUUGCU	ENSMUST00000025202.8|Kcnc1|ENSMUSG00000058975.8|potassium voltage gated channel, Shaw-related subfamily, member 1
mm39_v1_chr8_+_110595216_110595243	0.0007104520542245838	UAUUGCU	ENSMUST00000179721.8|Phlpp2|ENSMUSG00000031732.13|PH domain and leucine rich repeat protein phosphatase 2	ENSMUST00000034175.5|Phlpp2|ENSMUSG00000031732.13|PH domain and leucine rich repeat protein phosphatase 2
mm39_v1_chr1_-_58625431_58625482	0.0006878339501223695	UAUUGCU	ENSMUST00000161000.2|Fam126b|ENSMUSG00000038174.15|family with sequence similarity 126, member B	ENSMUST00000161600.8|Fam126b|ENSMUSG00000038174.15|family with sequence similarity 126, member B
mm39_v1_chr18_-_15851103_15851103	0.0006713234390346593	UAUUGCU	ENSMUST00000053017.13|Chst9|ENSMUSG00000047161.13|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9
mm39_v1_chr9_-_4796217_4796267	0.0006671494485318958	UAUUGCU	ENSMUST00000027020.13|Gria4|ENSMUSG00000025892.17|glutamate receptor, ionotropic, AMPA4 (alpha 4)	ENSMUST00000163309.2|Gria4|ENSMUSG00000025892.17|glutamate receptor, ionotropic, AMPA4 (alpha 4)
mm39_v1_chr15_-_8473918_8473991	0.0006518765909729269	UAUUGCU	ENSMUST00000052965.8|Nipbl|ENSMUSG00000022141.8|NIPBL cohesin loading factor
mm39_v1_chr16_+_21023505_21023537	0.000640333840987463	UAUUGCU	ENSMUST00000006112.7|Ephb3|ENSMUSG00000005958.16|Eph receptor B3
mm39_v1_chr4_+_59189239_59189257	0.0006355799102032982	UAUUGCU	ENSMUST00000030074.8|Ugcg|ENSMUSG00000028381.9|UDP-glucose ceramide glucosyltransferase
mm39_v1_chr12_+_11315868_11315887	0.0006321163587172248	UAUUGCU	ENSMUST00000020931.6|Smc6|ENSMUSG00000020608.8|structural maintenance of chromosomes 6
mm39_v1_chr12_+_51640097_51640166	0.0006094960877361889	UAUUGCU	ENSMUST00000164782.10|Coch|ENSMUSG00000020953.18|cochlin	ENSMUST00000085412.7|Coch|ENSMUSG00000020953.18|cochlin
mm39_v1_chr16_+_17712061_17712106	0.000603388717503119	UAUUGCU	ENSMUST00000046937.4|Tssk1|ENSMUSG00000041566.4|testis-specific serine kinase 1
mm39_v1_chr7_+_99508318_99508364	0.0005958931232490277	UAUUGCU	ENSMUST00000036155.10|Xrra1|ENSMUSG00000035211.10|X-ray radiation resistance associated 1
mm39_v1_chr11_-_50183129_50183191	0.0005468759288242355	UAUUGCU	ENSMUST00000059458.5|Maml1|ENSMUSG00000050567.17|mastermind like transcriptional coactivator 1
mm39_v1_chr9_+_3532778_3532778	0.0005407488819308635	UAUUGCU	ENSMUST00000115733.3|Gucy1a2|ENSMUSG00000041624.11|guanylate cyclase 1, soluble, alpha 2
mm39_v1_chr7_+_112278520_112278532	0.0004835962567609145	UAUUGCU	ENSMUST00000084705.13|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000239442.2|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000239404.2|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000059768.18|Tead1|ENSMUSG00000055320.19|TEA domain family member 1
mm39_v1_chr11_-_87249837_87249901	0.00046370689193929855	UAUUGCU	ENSMUST00000055438.5|Ppm1e|ENSMUSG00000046442.5|protein phosphatase 1E (PP2C domain containing)
mm39_v1_chr10_-_130116088_130116111	0.0004419778192958931	UAUUGCU	ENSMUST00000061571.5|Neurod4|ENSMUSG00000048015.5|neurogenic differentiation 4
mm39_v1_chr11_+_100332709_100332765	0.0004402246924822433	UAUUGCU	ENSMUST00000001599.4|Klhl10|ENSMUSG00000001558.6|kelch-like 10	ENSMUST00000107395.3|Klhl10|ENSMUSG00000001558.6|kelch-like 10
mm39_v1_chr5_+_28276353_28276371	0.00042642832213120546	UAUUGCU	ENSMUST00000059155.11|Insig1|ENSMUSG00000045294.12|insulin induced gene 1
mm39_v1_chr11_-_100653754_100653762	0.00042451890520593986	UAUUGCU	ENSMUST00000107360.3|Hcrt|ENSMUSG00000045471.5|hypocretin	ENSMUST00000055083.4|Hcrt|ENSMUSG00000045471.5|hypocretin
mm39_v1_chr13_-_13568106_13568209	0.0004192511149070685	UAUUGCU	ENSMUST00000021738.10|Gpr137b|ENSMUSG00000021306.12|G protein-coupled receptor 137B	ENSMUST00000220628.2|Gpr137b|ENSMUSG00000021306.12|G protein-coupled receptor 137B
mm39_v1_chr11_-_97078698_97078752	0.00041475906567860644	UAUUGCU	ENSMUST00000001479.5|Kpnb1|ENSMUSG00000001440.6|karyopherin (importin) beta 1
mm39_v1_chrX_+_145745496_145745516	0.0003586254177062881	UAUUGCU	ENSMUST00000036303.9|Htr2c|ENSMUSG00000041380.14|5-hydroxytryptamine (serotonin) receptor 2C	ENSMUST00000096299.9|Htr2c|ENSMUSG00000041380.14|5-hydroxytryptamine (serotonin) receptor 2C	ENSMUST00000156697.8|Htr2c|ENSMUSG00000041380.14|5-hydroxytryptamine (serotonin) receptor 2C
mm39_v1_chr2_+_172391501_172391524	0.0003404349395870718	UAUUGCU	ENSMUST00000030391.9|Tfap2c|ENSMUSG00000028640.12|transcription factor AP-2, gamma
mm39_v1_chr17_+_53873964_53874050	0.0002281701094327589	UAUUGCU	ENSMUST00000000724.15|Kat2b|ENSMUSG00000000708.15|K(lysine) acetyltransferase 2B
mm39_v1_chr4_-_136329953_136330071	0.0001887532427788824	UAUUGCU	ENSMUST00000105847.8|Kdm1a|ENSMUSG00000036940.16|lysine (K)-specific demethylase 1A	ENSMUST00000116273.9|Kdm1a|ENSMUSG00000036940.16|lysine (K)-specific demethylase 1A
mm39_v1_chr15_-_89064936_89064991	0.00014747145967348267	UAUUGCU	ENSMUST00000109331.9|Plxnb2|ENSMUSG00000036606.18|plexin B2
mm39_v1_chr10_+_79552421_79552502	0.00012346410237293884	UAUUGCU	ENSMUST00000099513.8|Hcn2|ENSMUSG00000020331.10|hyperpolarization-activated, cyclic nucleotide-gated K+ 2	ENSMUST00000020581.3|Hcn2|ENSMUSG00000020331.10|hyperpolarization-activated, cyclic nucleotide-gated K+ 2
mm39_v1_chr18_+_69478790_69478882	3.0004757323622033e-05	UAUUGCU	ENSMUST00000202116.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000114982.8|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000078486.13|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000202772.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000201288.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4
