mm39_v1_chr5_-_137598912_137599002	1.1253943571323333	UCACAGU	ENSMUST00000111007.8|Mospd3|ENSMUSG00000037221.14|motile sperm domain containing 3	ENSMUST00000133705.2|Mospd3|ENSMUSG00000037221.14|motile sperm domain containing 3
mm39_v1_chr8_+_127025265_127025343	0.952647340951073	UCACAGU	ENSMUST00000108759.3|Slc35f3|ENSMUSG00000057060.9|solute carrier family 35, member F3
mm39_v1_chr8_+_109441276_109441276	0.9469548793064388	UCACAGU	ENSMUST00000043896.10|Zfhx3|ENSMUSG00000038872.11|zinc finger homeobox 3
mm39_v1_chr6_-_38853097_38853167	0.9085857698706237	UCACAGU	ENSMUST00000161779.8|Hipk2|ENSMUSG00000061436.16|homeodomain interacting protein kinase 2
mm39_v1_chr11_+_98754434_98754472	0.8995371460188811	UCACAGU	ENSMUST00000142414.8|Wipf2|ENSMUSG00000038013.15|WAS/WASL interacting protein family, member 2	ENSMUST00000037480.9|Wipf2|ENSMUSG00000038013.15|WAS/WASL interacting protein family, member 2
mm39_v1_chr17_-_32074754_32074780	0.8225540847738528	UCACAGU	ENSMUST00000024839.6|Sik1|ENSMUSG00000024042.8|salt inducible kinase 1
mm39_v1_chr11_+_98828495_98828559	0.8154751510973073	UCACAGU	ENSMUST00000107475.9|Rara|ENSMUSG00000037992.17|retinoic acid receptor, alpha	ENSMUST00000068133.10|Rara|ENSMUSG00000037992.17|retinoic acid receptor, alpha
mm39_v1_chr4_+_119671688_119671723	0.785122216507193	UCACAGU	ENSMUST00000106307.9|Hivep3|ENSMUSG00000028634.18|human immunodeficiency virus type I enhancer binding protein 3
mm39_v1_chrX_+_137815171_137815187	0.7809063894000595	UCACAGU	ENSMUST00000064937.14|Nrk|ENSMUSG00000052854.16|Nik related kinase	ENSMUST00000113052.8|Nrk|ENSMUSG00000052854.16|Nik related kinase
mm39_v1_chr7_-_19556612_19556712	0.6758869064529196	UCACAGU	ENSMUST00000120537.8|Bcl3|ENSMUSG00000053175.18|B cell leukemia/lymphoma 3
mm39_v1_chr11_+_45946800_45946895	0.6744459013814998	UCACAGU	ENSMUST00000011400.8|Adam19|ENSMUSG00000011256.17|a disintegrin and metallopeptidase domain 19 (meltrin beta)
mm39_v1_chr3_+_131791042_131791060	0.6574622409122038	UCACAGU	ENSMUST00000029665.7|Dkk2|ENSMUSG00000028031.7|dickkopf WNT signaling pathway inhibitor 2
mm39_v1_chr14_-_14466825_14466883	0.6482111088850263	UCACAGU	ENSMUST00000225234.2|Abhd6|ENSMUSG00000025277.15|abhydrolase domain containing 6	ENSMUST00000166497.9|Abhd6|ENSMUSG00000025277.15|abhydrolase domain containing 6
mm39_v1_chr1_-_54596754_54596856	0.6382117877237966	UCACAGU	ENSMUST00000097739.5|Pgap1|ENSMUSG00000073678.5|post-GPI attachment to proteins 1
mm39_v1_chr13_+_30933209_30933290	0.6271086236556771	UCACAGU	ENSMUST00000021784.10|Irf4|ENSMUSG00000021356.11|interferon regulatory factor 4	ENSMUST00000110307.3|Irf4|ENSMUSG00000021356.11|interferon regulatory factor 4	ENSMUST00000222125.2|Irf4|ENSMUSG00000021356.11|interferon regulatory factor 4
mm39_v1_chr1_-_162567919_162568103	0.6094816059348479	UCACAGU	ENSMUST00000182331.2|Prrc2c|ENSMUSG00000040225.16|proline-rich coiled-coil 2C	ENSMUST00000183011.8|Prrc2c|ENSMUSG00000040225.16|proline-rich coiled-coil 2C	ENSMUST00000182593.8|Prrc2c|ENSMUSG00000040225.16|proline-rich coiled-coil 2C	ENSMUST00000182149.8|Prrc2c|ENSMUSG00000040225.16|proline-rich coiled-coil 2C
mm39_v1_chr8_-_123425805_123425859	0.5678497060587039	UCACAGU	ENSMUST00000127984.9|Cbfa2t3|ENSMUSG00000006362.17|CBFA2/RUNX1 translocation partner 3
mm39_v1_chr11_+_77985486_77985504	0.5416964629074588	UCACAGU	ENSMUST00000073705.12|Fam222b|ENSMUSG00000037750.17|family with sequence similarity 222, member B
mm39_v1_chr18_+_61058684_61058712	0.5399507689176767	UCACAGU	ENSMUST00000102888.10|Camk2a|ENSMUSG00000024617.17|calcium/calmodulin-dependent protein kinase II alpha	ENSMUST00000025519.11|Camk2a|ENSMUSG00000024617.17|calcium/calmodulin-dependent protein kinase II alpha
mm39_v1_chr7_-_29204812_29204898	0.5306874141008476	UCACAGU	ENSMUST00000183096.8|Sipa1l3|ENSMUSG00000030583.17|signal-induced proliferation-associated 1 like 3	ENSMUST00000085809.11|Sipa1l3|ENSMUSG00000030583.17|signal-induced proliferation-associated 1 like 3
mm39_v1_chr17_+_26633794_26633939	0.5305500278673975	UCACAGU	ENSMUST00000182897.8|Neurl1b|ENSMUSG00000034413.15|neuralized E3 ubiquitin protein ligase 1B	ENSMUST00000183077.8|Neurl1b|ENSMUSG00000034413.15|neuralized E3 ubiquitin protein ligase 1B	ENSMUST00000053020.8|Neurl1b|ENSMUSG00000034413.15|neuralized E3 ubiquitin protein ligase 1B
mm39_v1_chr18_+_34354031_34354073	0.5305070989746005	UCACAGU	ENSMUST00000115781.10|Apc|ENSMUSG00000005871.16|APC, WNT signaling pathway regulator	ENSMUST00000079362.13|Apc|ENSMUSG00000005871.16|APC, WNT signaling pathway regulator
mm39_v1_chr7_-_43139390_43139499	0.5304704250366379	UCACAGU	ENSMUST00000107974.3|Iglon5|ENSMUSG00000013367.6|IgLON family member 5
mm39_v1_chr6_-_116170389_116170462	0.5284195582541471	UCACAGU	ENSMUST00000088896.10|Tmcc1|ENSMUSG00000030126.18|transmembrane and coiled coil domains 1
mm39_v1_chr11_-_51647290_51647445	0.5211309348498422	UCACAGU	ENSMUST00000109097.9|Sec24a|ENSMUSG00000036391.17|Sec24 related gene family, member A (S. cerevisiae)
mm39_v1_chr5_+_99002293_99002325	0.5182760108131568	UCACAGU	ENSMUST00000031278.6|Bmp3|ENSMUSG00000029335.6|bone morphogenetic protein 3	ENSMUST00000200388.2|Bmp3|ENSMUSG00000029335.6|bone morphogenetic protein 3
mm39_v1_chr6_-_72935468_72935479	0.5179468317511264	UCACAGU	ENSMUST00000114050.8|Tmsb10|ENSMUSG00000079523.9|thymosin, beta 10
mm39_v1_chr16_-_92622972_92623037	0.509669607098216	UCACAGU	ENSMUST00000023673.14|Runx1|ENSMUSG00000022952.18|runt related transcription factor 1
mm39_v1_chr2_+_32617671_32617727	0.5023627005135374	UCACAGU	ENSMUST00000113242.5|Sh2d3c|ENSMUSG00000059013.13|SH2 domain containing 3C
mm39_v1_chr7_+_112278520_112278532	0.4988268804968402	UCACAGU	ENSMUST00000084705.13|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000239442.2|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000239404.2|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000059768.18|Tead1|ENSMUSG00000055320.19|TEA domain family member 1
mm39_v1_chr8_-_27664651_27664680	0.49790253517959804	UCACAGU	ENSMUST00000054212.7|Rab11fip1|ENSMUSG00000031488.15|RAB11 family interacting protein 1 (class I)	ENSMUST00000033878.14|Rab11fip1|ENSMUSG00000031488.15|RAB11 family interacting protein 1 (class I)	ENSMUST00000209377.2|Rab11fip1|ENSMUSG00000031488.15|RAB11 family interacting protein 1 (class I)
mm39_v1_chrX_-_133062677_133062677	0.4934825238660761	UCACAGU	ENSMUST00000033611.5|Xkrx|ENSMUSG00000031258.5|X-linked Kx blood group related, X-linked
mm39_v1_chr16_+_51851588_51851705	0.4906942460157719	UCACAGU	ENSMUST00000114471.3|Cblb|ENSMUSG00000022637.12|Casitas B-lineage lymphoma b
mm39_v1_chr2_-_18042548_18042548	0.486275622785386	UCACAGU	ENSMUST00000066163.3|A930004D18Rik|ENSMUSG00000054057.3|RIKEN cDNA A930004D18 gene
mm39_v1_chr11_+_105858764_105858782	0.4729589855144101	UCACAGU	ENSMUST00000001963.14|Ace|ENSMUSG00000020681.15|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1
mm39_v1_chr5_-_114131934_114131964	0.47264752494561896	UCACAGU	ENSMUST00000159592.8|Ssh1|ENSMUSG00000042121.17|slingshot protein phosphatase 1
mm39_v1_chr5_-_114829032_114829058	0.47241535626105613	UCACAGU	ENSMUST00000012028.14|Gltp|ENSMUSG00000011884.14|glycolipid transfer protein
mm39_v1_chr15_-_78004211_78004232	0.47097213648225933	UCACAGU	ENSMUST00000019290.3|Cacng2|ENSMUSG00000019146.3|calcium channel, voltage-dependent, gamma subunit 2
mm39_v1_chr2_-_5719302_5719349	0.46038468961778634	UCACAGU	ENSMUST00000044009.14|Camk1d|ENSMUSG00000039145.17|calcium/calmodulin-dependent protein kinase ID
mm39_v1_chr15_-_103248512_103248527	0.45228255164917286	UCACAGU	ENSMUST00000168828.3|Zfp385a|ENSMUSG00000000552.11|zinc finger protein 385A
mm39_v1_chr5_-_110596352_110596385	0.45112184786836135	UCACAGU	ENSMUST00000069483.12|Fbrsl1|ENSMUSG00000043323.18|fibrosin-like 1	ENSMUST00000200293.2|Fbrsl1|ENSMUSG00000043323.18|fibrosin-like 1
mm39_v1_chr1_+_62742444_62742511	0.4474039827758933	UCACAGU	ENSMUST00000102822.9|Nrp2|ENSMUSG00000025969.16|neuropilin 2	ENSMUST00000075144.12|Nrp2|ENSMUSG00000025969.16|neuropilin 2
mm39_v1_chr5_-_124387812_124387845	0.43435614304200154	UCACAGU	ENSMUST00000162812.8|Pitpnm2|ENSMUSG00000029406.16|phosphatidylinositol transfer protein, membrane-associated 2
mm39_v1_chr15_-_58078274_58078328	0.4299051489594144	UCACAGU	ENSMUST00000022986.8|Fbxo32|ENSMUSG00000022358.8|F-box protein 32
mm39_v1_chr8_+_66070661_66070743	0.4277710366257458	UCACAGU	ENSMUST00000110258.8|Marchf1|ENSMUSG00000036469.17|membrane associated ring-CH-type finger 1	ENSMUST00000110256.8|Marchf1|ENSMUSG00000036469.17|membrane associated ring-CH-type finger 1	ENSMUST00000110255.8|Marchf1|ENSMUSG00000036469.17|membrane associated ring-CH-type finger 1
mm39_v1_chr12_-_91556761_91556783	0.42772029344886214	UCACAGU	ENSMUST00000021345.14|Gtf2a1|ENSMUSG00000020962.15|general transcription factor II A, 1
mm39_v1_chr5_-_33011530_33011600	0.42264718679980917	UCACAGU	ENSMUST00000130134.3|Prr14l|ENSMUSG00000054280.15|proline rich 14-like	ENSMUST00000120129.9|Prr14l|ENSMUSG00000054280.15|proline rich 14-like
mm39_v1_chr6_-_120015608_120015660	0.4153806680881057	UCACAGU	ENSMUST00000177761.8|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1	ENSMUST00000088644.13|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1	ENSMUST00000060043.13|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1
mm39_v1_chr4_-_136563154_136563299	0.4140735002391805	UCACAGU	ENSMUST00000105846.9|Ephb2|ENSMUSG00000028664.15|Eph receptor B2	ENSMUST00000059287.14|Ephb2|ENSMUSG00000028664.15|Eph receptor B2	ENSMUST00000105845.9|Ephb2|ENSMUSG00000028664.15|Eph receptor B2
mm39_v1_chr3_+_36917251_36917296	0.41312677022300487	UCACAGU	ENSMUST00000057272.15|4932438A13Rik|ENSMUSG00000037270.19|RIKEN cDNA 4932438A13 gene
mm39_v1_chr5_-_135423353_135423412	0.400279964751332	UCACAGU	ENSMUST00000111171.6|Pom121|ENSMUSG00000053293.10|nuclear pore membrane protein 121
mm39_v1_chr4_+_125384481_125384495	0.39711531238944625	UCACAGU	ENSMUST00000030676.8|Grik3|ENSMUSG00000001985.10|glutamate receptor, ionotropic, kainate 3
mm39_v1_chr1_+_136059101_136059142	0.39534910414886315	UCACAGU	ENSMUST00000075164.11|Kif21b|ENSMUSG00000041642.19|kinesin family member 21B
mm39_v1_chr11_-_103158190_103158298	0.39358290340564417	UCACAGU	ENSMUST00000021324.3|Map3k14|ENSMUSG00000020941.8|mitogen-activated protein kinase kinase kinase 14
mm39_v1_chr11_+_62139782_62139865	0.3920105050519984	UCACAGU	ENSMUST00000018644.3|Adora2b|ENSMUSG00000018500.3|adenosine A2b receptor
mm39_v1_chr5_-_25703700_25703841	0.38717404299677344	UCACAGU	ENSMUST00000173073.8|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C	ENSMUST00000045291.14|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C	ENSMUST00000173174.2|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C
mm39_v1_chr8_-_70449018_70449038	0.38378958142252084	UCACAGU	ENSMUST00000065169.12|Gatad2a|ENSMUSG00000036180.16|GATA zinc finger domain containing 2A	ENSMUST00000212478.2|Gatad2a|ENSMUSG00000036180.16|GATA zinc finger domain containing 2A
mm39_v1_chr19_-_31742427_31742480	0.3663023700243244	UCACAGU	ENSMUST00000065067.14|Prkg1|ENSMUSG00000052920.17|protein kinase, cGMP-dependent, type I
mm39_v1_chr17_-_43187280_43187368	0.36550699465608205	UCACAGU	ENSMUST00000024709.9|Cd2ap|ENSMUSG00000061665.8|CD2-associated protein	ENSMUST00000233476.2|Cd2ap|ENSMUSG00000061665.8|CD2-associated protein
mm39_v1_chr17_-_30107544_30107682	0.3651989728378668	UCACAGU	ENSMUST00000171691.9|Mdga1|ENSMUSG00000043557.17|MAM domain containing glycosylphosphatidylinositol anchor 1
mm39_v1_chr7_-_136916123_136916174	0.36392678168727105	UCACAGU	ENSMUST00000106118.10|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000168203.2|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000169486.9|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000033378.13|Ebf3|ENSMUSG00000010476.15|early B cell factor 3
mm39_v1_chr19_-_32365862_32365912	0.36038979059150833	UCACAGU	ENSMUST00000099514.10|Sgms1|ENSMUSG00000040451.19|sphingomyelin synthase 1
mm39_v1_chr7_+_140641010_140641022	0.3585576327514867	UCACAGU	ENSMUST00000048002.7|B4galnt4|ENSMUSG00000055629.6|beta-1,4-N-acetyl-galactosaminyl transferase 4
mm39_v1_chr17_+_5045178_5045349	0.3578768676158845	UCACAGU	ENSMUST00000092723.11|Arid1b|ENSMUSG00000069729.15|AT rich interactive domain 1B (SWI-like)	ENSMUST00000232180.2|Arid1b|ENSMUSG00000069729.15|AT rich interactive domain 1B (SWI-like)	ENSMUST00000115797.9|Arid1b|ENSMUSG00000069729.15|AT rich interactive domain 1B (SWI-like)
mm39_v1_chr14_+_76192449_76192456	0.34978096111812434	UCACAGU	ENSMUST00000050120.4|Kctd4|ENSMUSG00000046523.6|potassium channel tetramerisation domain containing 4
mm39_v1_chr14_-_25769457_25769513	0.34889256588726764	UCACAGU	ENSMUST00000069180.8|Zcchc24|ENSMUSG00000055538.8|zinc finger, CCHC domain containing 24
mm39_v1_chr12_-_44257109_44257173	0.3486850205676576	UCACAGU	ENSMUST00000015049.5|Dnajb9|ENSMUSG00000014905.5|DnaJ heat shock protein family (Hsp40) member B9
mm39_v1_chr9_+_77543776_77543810	0.3466861464597538	UCACAGU	ENSMUST00000057781.8|Klhl31|ENSMUSG00000044938.9|kelch-like 31
mm39_v1_chr9_-_44710480_44710604	0.34554008466450487	UCACAGU	ENSMUST00000214833.2|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000213972.2|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000214431.2|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000213363.2|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000114705.9|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000002100.8|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25
mm39_v1_chr9_+_108337726_108337771	0.34494221000658026	UCACAGU	ENSMUST00000061209.7|Ccdc71|ENSMUSG00000049305.7|coiled-coil domain containing 71	ENSMUST00000193269.2|Ccdc71|ENSMUSG00000049305.7|coiled-coil domain containing 71
mm39_v1_chrX_-_20157966_20158078	0.3395697787055266	UCACAGU	ENSMUST00000115393.3|Slc9a7|ENSMUSG00000037341.15|solute carrier family 9 (sodium/hydrogen exchanger), member 7	ENSMUST00000072451.11|Slc9a7|ENSMUSG00000037341.15|solute carrier family 9 (sodium/hydrogen exchanger), member 7
mm39_v1_chr17_+_15720150_15720222	0.3357878130982219	UCACAGU	ENSMUST00000159197.8|Tbp|ENSMUSG00000014767.18|TATA box binding protein	ENSMUST00000014911.12|Tbp|ENSMUSG00000014767.18|TATA box binding protein	ENSMUST00000162505.8|Tbp|ENSMUSG00000014767.18|TATA box binding protein	ENSMUST00000147081.9|Tbp|ENSMUSG00000014767.18|TATA box binding protein	ENSMUST00000118001.8|Tbp|ENSMUSG00000014767.18|TATA box binding protein	ENSMUST00000143924.8|Tbp|ENSMUSG00000014767.18|TATA box binding protein	ENSMUST00000119879.9|Tbp|ENSMUSG00000014767.18|TATA box binding protein	ENSMUST00000155051.8|Tbp|ENSMUSG00000014767.18|TATA box binding protein	ENSMUST00000117593.8|Tbp|ENSMUSG00000014767.18|TATA box binding protein
mm39_v1_chr7_-_123099672_123099799	0.33491203518896845	UCACAGU	ENSMUST00000042470.14|Zkscan2|ENSMUSG00000030757.14|zinc finger with KRAB and SCAN domains 2	ENSMUST00000128217.2|Zkscan2|ENSMUSG00000030757.14|zinc finger with KRAB and SCAN domains 2
mm39_v1_chr8_+_46924074_46924146	0.3339038095221444	UCACAGU	ENSMUST00000034046.13|Acsl1|ENSMUSG00000018796.14|acyl-CoA synthetase long-chain family member 1	ENSMUST00000211644.2|Acsl1|ENSMUSG00000018796.14|acyl-CoA synthetase long-chain family member 1
mm39_v1_chr11_-_102076028_102076142	0.3307759937535845	UCACAGU	ENSMUST00000107156.9|Lsm12|ENSMUSG00000020922.12|LSM12 homolog	ENSMUST00000021297.6|Lsm12|ENSMUSG00000020922.12|LSM12 homolog
mm39_v1_chr12_-_72117865_72117899	0.3303163075616453	UCACAGU	ENSMUST00000050649.6|Gpr135|ENSMUSG00000043398.6|G protein-coupled receptor 135
mm39_v1_chr2_-_27317004_27317074	0.3291810531246609	UCACAGU	ENSMUST00000056176.8|Vav2|ENSMUSG00000009621.19|vav 2 oncogene
mm39_v1_chr1_+_160733942_160734030	0.328693985468046	UCACAGU	ENSMUST00000161609.8|Rc3h1|ENSMUSG00000040423.12|RING CCCH (C3H) domains 1
mm39_v1_chr8_-_32408864_32408913	0.32827530284840484	UCACAGU	ENSMUST00000073884.7|Nrg1|ENSMUSG00000062991.10|neuregulin 1	ENSMUST00000238812.2|Nrg1|ENSMUSG00000062991.10|neuregulin 1
mm39_v1_chr3_-_102111892_102112009	0.3275420952280679	UCACAGU	ENSMUST00000029453.13|Vangl1|ENSMUSG00000027860.16|VANGL planar cell polarity 1
mm39_v1_chr10_+_95350975_95351043	0.3272528672932557	UCACAGU	ENSMUST00000099329.5|Ube2n|ENSMUSG00000074781.6|ubiquitin-conjugating enzyme E2N
mm39_v1_chr1_-_158785937_158785937	0.32466051849199684	UCACAGU	ENSMUST00000159861.9|Pappa2|ENSMUSG00000073530.12|pappalysin 2
mm39_v1_chr5_-_90514360_90514469	0.3221629214280068	UCACAGU	ENSMUST00000168058.7|Ankrd17|ENSMUSG00000055204.16|ankyrin repeat domain 17	ENSMUST00000014421.15|Ankrd17|ENSMUSG00000055204.16|ankyrin repeat domain 17
mm39_v1_chr12_-_16660960_16660994	0.3193673921861035	UCACAGU	ENSMUST00000239165.2|Lpin1|ENSMUSG00000020593.17|lipin 1	ENSMUST00000111067.10|Lpin1|ENSMUSG00000020593.17|lipin 1
mm39_v1_chrX_+_47430221_47430295	0.31739675854902133	UCACAGU	ENSMUST00000136348.8|Bcorl1|ENSMUSG00000036959.16|BCL6 co-repressor-like 1
mm39_v1_chr16_+_43993599_43993760	0.31466058245427536	UCACAGU	ENSMUST00000119746.8|Usf3|ENSMUSG00000068284.15|upstream transcription factor family member 3	ENSMUST00000088356.10|Usf3|ENSMUSG00000068284.15|upstream transcription factor family member 3	ENSMUST00000169582.3|Usf3|ENSMUSG00000068284.15|upstream transcription factor family member 3
mm39_v1_chr14_+_48358267_48358285	0.31371545413828744	UCACAGU	ENSMUST00000073150.6|Peli2|ENSMUSG00000021846.10|pellino 2
mm39_v1_chr7_+_18853778_18853839	0.3070204926487633	UCACAGU	ENSMUST00000053109.5|Fbxo46|ENSMUSG00000050428.8|F-box protein 46
mm39_v1_chr2_-_33321306_33321359	0.30596117125281325	UCACAGU	ENSMUST00000113158.8|Zbtb34|ENSMUSG00000068966.11|zinc finger and BTB domain containing 34
mm39_v1_chrX_-_142716200_142716307	0.305787746587796	UCACAGU	ENSMUST00000112851.8|Dcx|ENSMUSG00000031285.15|doublecortin	ENSMUST00000112856.3|Dcx|ENSMUSG00000031285.15|doublecortin	ENSMUST00000033642.10|Dcx|ENSMUSG00000031285.15|doublecortin
mm39_v1_chr5_+_64960705_64960731	0.29939637902759075	UCACAGU	ENSMUST00000165536.8|Klf3|ENSMUSG00000029178.15|Kruppel-like factor 3 (basic)
mm39_v1_chr7_+_64151435_64151454	0.29921019753195816	UCACAGU	ENSMUST00000032732.15|Apba2|ENSMUSG00000030519.15|amyloid beta (A4) precursor protein-binding, family A, member 2
mm39_v1_chr8_+_23901506_23901523	0.2981689154458043	UCACAGU	ENSMUST00000033952.8|Sfrp1|ENSMUSG00000031548.8|secreted frizzled-related protein 1
mm39_v1_chr6_-_142910094_142910178	0.29655343939757	UCACAGU	ENSMUST00000032421.4|St8sia1|ENSMUSG00000030283.8|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1
mm39_v1_chr13_-_103911092_103911139	0.2956506977619024	UCACAGU	ENSMUST00000074616.7|Srek1|ENSMUSG00000032621.9|splicing regulatory glutamine/lysine-rich protein 1
mm39_v1_chr2_-_45003270_45003296	0.28806300395896306	UCACAGU	ENSMUST00000202935.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000068415.11|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000127520.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr13_-_115068626_115068645	0.28474384266432484	UCACAGU	ENSMUST00000056117.10|Itga2|ENSMUSG00000015533.10|integrin alpha 2
mm39_v1_chr8_+_4288733_4288768	0.28385870159228294	UCACAGU	ENSMUST00000110998.9|Map2k7|ENSMUSG00000002948.20|mitogen-activated protein kinase kinase 7	ENSMUST00000062686.11|Map2k7|ENSMUSG00000002948.20|mitogen-activated protein kinase kinase 7
mm39_v1_chrX_+_95139639_95139662	0.28281550594377236	UCACAGU	ENSMUST00000117399.2|Msn|ENSMUSG00000031207.17|moesin
mm39_v1_chr2_-_113588983_113589000	0.28267666177361245	UCACAGU	ENSMUST00000099575.4|Grem1|ENSMUSG00000074934.4|gremlin 1, DAN family BMP antagonist
mm39_v1_chr10_+_52566616_52566651	0.27981336866270373	UCACAGU	ENSMUST00000105473.3|Slc35f1|ENSMUSG00000038602.8|solute carrier family 35, member F1
mm39_v1_chrX_+_71006577_71006619	0.27952317961085027	UCACAGU	ENSMUST00000048790.7|Prrg3|ENSMUSG00000033361.14|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)
mm39_v1_chr2_+_136555364_136555412	0.27904733947283106	UCACAGU	ENSMUST00000028727.11|Snap25|ENSMUSG00000027273.14|synaptosomal-associated protein 25	ENSMUST00000110098.4|Snap25|ENSMUSG00000027273.14|synaptosomal-associated protein 25
mm39_v1_chr7_-_45516553_45516553	0.2781630775637788	UCACAGU	ENSMUST00000002848.10|Grin2d|ENSMUSG00000002771.13|glutamate receptor, ionotropic, NMDA2D (epsilon 4)
mm39_v1_chr14_+_63075127_63075203	0.2714650909793993	UCACAGU	ENSMUST00000014691.10|Wdfy2|ENSMUSG00000014547.11|WD repeat and FYVE domain containing 2
mm39_v1_chr8_-_103512274_103512408	0.2707814369951904	UCACAGU	ENSMUST00000075190.5|Cdh11|ENSMUSG00000031673.7|cadherin 11
mm39_v1_chr10_+_110581293_110581433	0.2685811324728128	UCACAGU	ENSMUST00000174857.8|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7	ENSMUST00000073781.12|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7	ENSMUST00000173471.8|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7	ENSMUST00000173634.2|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7
mm39_v1_chr2_+_69553141_69553189	0.2685151067233262	UCACAGU	ENSMUST00000090858.10|Ppig|ENSMUSG00000042133.17|peptidyl-prolyl isomerase G (cyclophilin G)
mm39_v1_chr13_-_100240570_100240602	0.2673980722311715	UCACAGU	ENSMUST00000038104.12|Bdp1|ENSMUSG00000049658.14|B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
mm39_v1_chr8_+_36054919_36054981	0.26546774866430595	UCACAGU	ENSMUST00000037666.6|Mfhas1|ENSMUSG00000070056.7|malignant fibrous histiocytoma amplified sequence 1
mm39_v1_chr2_-_63928339_63928367	0.26374433548697024	UCACAGU	ENSMUST00000131615.9|Fign|ENSMUSG00000075324.14|fidgetin
mm39_v1_chr8_-_3329605_3329622	0.2636774845335293	UCACAGU	ENSMUST00000091291.5|Insr|ENSMUSG00000005534.11|insulin receptor
mm39_v1_chr9_+_100525501_100525594	0.2617547937480531	UCACAGU	ENSMUST00000146312.8|Stag1|ENSMUSG00000037286.16|stromal antigen 1	ENSMUST00000129269.8|Stag1|ENSMUSG00000037286.16|stromal antigen 1
mm39_v1_chr11_-_98040377_98040446	0.2609921697460176	UCACAGU	ENSMUST00000103143.10|Fbxl20|ENSMUSG00000020883.19|F-box and leucine-rich repeat protein 20
mm39_v1_chr11_-_46057224_46057335	0.25875667245570727	UCACAGU	ENSMUST00000020679.3|Nipal4|ENSMUSG00000020411.3|NIPA-like domain containing 4
mm39_v1_chr11_-_86884507_86884538	0.25603726344050826	UCACAGU	ENSMUST00000018571.5|Ypel2|ENSMUSG00000018427.9|yippee like 2
mm39_v1_chr7_+_48896560_48896592	0.25560058610802966	UCACAGU	ENSMUST00000184945.8|Nav2|ENSMUSG00000052512.18|neuron navigator 2
mm39_v1_chr11_-_78588194_78588205	0.2533869825262432	UCACAGU	ENSMUST00000142739.8|Nlk|ENSMUSG00000017376.16|nemo like kinase
mm39_v1_chr1_+_64729603_64729625	0.25333104241549	UCACAGU	ENSMUST00000114077.8|Ccnyl1|ENSMUSG00000070871.11|cyclin Y-like 1
mm39_v1_chr1_-_57011595_57011661	0.2522982961450607	UCACAGU	ENSMUST00000042857.14|Satb2|ENSMUSG00000038331.16|special AT-rich sequence binding protein 2
mm39_v1_chr17_+_74111823_74111836	0.25176827881085717	UCACAGU	ENSMUST00000024860.9|Ehd3|ENSMUSG00000024065.9|EH-domain containing 3
mm39_v1_chr12_-_46865709_46865720	0.2508476415411116	UCACAGU	ENSMUST00000021438.8|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr2_+_179684288_179684355	0.24960927931650062	UCACAGU	ENSMUST00000041126.9|Ss18l1|ENSMUSG00000039086.10|SS18, nBAF chromatin remodeling complex subunit like 1
mm39_v1_chr7_-_28079678_28079710	0.24628571280592532	UCACAGU	ENSMUST00000051241.7|Zfp36|ENSMUSG00000044786.7|zinc finger protein 36
mm39_v1_chr11_-_79037213_79037236	0.24444938587480924	UCACAGU	ENSMUST00000018478.11|Ksr1|ENSMUSG00000018334.19|kinase suppressor of ras 1	ENSMUST00000108264.8|Ksr1|ENSMUSG00000018334.19|kinase suppressor of ras 1
mm39_v1_chr2_-_153083322_153083346	0.24383203117352822	UCACAGU	ENSMUST00000056924.14|Plagl2|ENSMUSG00000051413.18|pleiomorphic adenoma gene-like 2
mm39_v1_chr3_-_119576911_119577037	0.24173389810582216	UCACAGU	ENSMUST00000197464.5|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2	ENSMUST00000198403.2|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2	ENSMUST00000029780.12|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2
mm39_v1_chr18_+_82928959_82929005	0.24115237515167887	UCACAGU	ENSMUST00000171238.8|Zfp516|ENSMUSG00000058881.14|zinc finger protein 516
mm39_v1_chr9_-_70411000_70411092	0.23757564689812619	UCACAGU	ENSMUST00000034739.12|Rnf111|ENSMUSG00000032217.14|ring finger 111
mm39_v1_chr15_-_63932288_63932327	0.23440663605840184	UCACAGU	ENSMUST00000063838.11|Cyrib|ENSMUSG00000022378.15|CYFIP related Rac1 interactor B	ENSMUST00000228908.2|Cyrib|ENSMUSG00000022378.15|CYFIP related Rac1 interactor B
mm39_v1_chr3_+_54662995_54663069	0.23349890618156904	UCACAGU	ENSMUST00000029371.3|Smad9|ENSMUSG00000027796.3|SMAD family member 9
mm39_v1_chr7_+_121666388_121666438	0.233372938984048	UCACAGU	ENSMUST00000033158.6|Ubfd1|ENSMUSG00000030870.13|ubiquitin family domain containing 1
mm39_v1_chr3_+_145643760_145643812	0.2301680024278178	UCACAGU	ENSMUST00000039571.14|2410004B18Rik|ENSMUSG00000036873.14|RIKEN cDNA 2410004B18 gene
mm39_v1_chr8_-_96534085_96534099	0.22824867014684486	UCACAGU	ENSMUST00000098473.11|Cnot1|ENSMUSG00000036550.17|CCR4-NOT transcription complex, subunit 1	ENSMUST00000211887.2|Cnot1|ENSMUSG00000036550.17|CCR4-NOT transcription complex, subunit 1
mm39_v1_chr3_+_101917455_101917487	0.22800020009797708	UCACAGU	ENSMUST00000066187.6|Nhlh2|ENSMUSG00000048540.9|nescient helix loop helix 2	ENSMUST00000198675.2|Nhlh2|ENSMUSG00000048540.9|nescient helix loop helix 2
mm39_v1_chr11_-_113574981_113575013	0.22761709661186416	UCACAGU	ENSMUST00000120194.2|Fam104a|ENSMUSG00000041629.8|family with sequence similarity 104, member A
mm39_v1_chr1_-_134006847_134006862	0.2262696105530961	UCACAGU	ENSMUST00000020692.7|Btg2|ENSMUSG00000020423.7|BTG anti-proliferation factor 2
mm39_v1_chr4_-_3938352_3938401	0.2258966651564378	UCACAGU	ENSMUST00000003369.10|Plag1|ENSMUSG00000003282.10|pleiomorphic adenoma gene 1
mm39_v1_chr17_-_80787398_80787398	0.22464401487774707	UCACAGU	ENSMUST00000068714.7|Sos1|ENSMUSG00000024241.8|SOS Ras/Rac guanine nucleotide exchange factor 1
mm39_v1_chr5_+_97145533_97145625	0.224331662347637	UCACAGU	ENSMUST00000112974.6|Bmp2k|ENSMUSG00000034663.14|BMP2 inducible kinase	ENSMUST00000035635.10|Bmp2k|ENSMUSG00000034663.14|BMP2 inducible kinase
mm39_v1_chr2_-_9883391_9883418	0.22374025704299225	UCACAGU	ENSMUST00000102976.4|Gata3|ENSMUSG00000015619.11|GATA binding protein 3
mm39_v1_chr9_-_95288775_95288775	0.221954553052387	UCACAGU	ENSMUST00000036267.8|Chst2|ENSMUSG00000033350.8|carbohydrate sulfotransferase 2
mm39_v1_chr9_+_83430363_83430393	0.22115128690692723	UCACAGU	ENSMUST00000188241.7|Sh3bgrl2|ENSMUSG00000032261.17|SH3 domain binding glutamic acid-rich protein like 2	ENSMUST00000113215.10|Sh3bgrl2|ENSMUSG00000032261.17|SH3 domain binding glutamic acid-rich protein like 2
mm39_v1_chr8_+_85141975_85142030	0.2186527952259939	UCACAGU	ENSMUST00000121390.8|Cacna1a|ENSMUSG00000034656.19|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	ENSMUST00000122053.2|Cacna1a|ENSMUSG00000034656.19|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
mm39_v1_chrX_-_107877909_107877987	0.21826387133600306	UCACAGU	ENSMUST00000101283.4|Brwd3|ENSMUSG00000063663.12|bromodomain and WD repeat domain containing 3	ENSMUST00000150434.8|Brwd3|ENSMUSG00000063663.12|bromodomain and WD repeat domain containing 3
mm39_v1_chr12_+_4967376_4967438	0.21626465354167743	UCACAGU	ENSMUST00000045664.7|Atad2b|ENSMUSG00000052812.6|ATPase family, AAA domain containing 2B
mm39_v1_chr1_-_131455039_131455123	0.2158791631625713	UCACAGU	ENSMUST00000097588.9|Srgap2|ENSMUSG00000026425.16|SLIT-ROBO Rho GTPase activating protein 2	ENSMUST00000186543.7|Srgap2|ENSMUSG00000026425.16|SLIT-ROBO Rho GTPase activating protein 2
mm39_v1_chr10_-_80634293_80634460	0.21454437599375414	UCACAGU	ENSMUST00000218209.2|Plekhj1|ENSMUSG00000035278.10|pleckstrin homology domain containing, family J member 1	ENSMUST00000036805.7|Plekhj1|ENSMUSG00000035278.10|pleckstrin homology domain containing, family J member 1
mm39_v1_chr6_-_53797748_53797822	0.21313910848859516	UCACAGU	ENSMUST00000127748.5|Tril|ENSMUSG00000043496.8|TLR4 interactor with leucine-rich repeats
mm39_v1_chr11_+_79230618_79230719	0.21198616439343843	UCACAGU	ENSMUST00000219057.2|Nf1|ENSMUSG00000020716.17|neurofibromin 1	ENSMUST00000108251.9|Nf1|ENSMUSG00000020716.17|neurofibromin 1	ENSMUST00000071325.9|Nf1|ENSMUSG00000020716.17|neurofibromin 1
mm39_v1_chr1_+_86230931_86230997	0.2114060039610909	UCACAGU	ENSMUST00000113306.4|B3gnt7|ENSMUSG00000079445.4|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7
mm39_v1_chr19_-_59932079_59932110	0.2110915884373731	UCACAGU	ENSMUST00000171986.8|Rab11fip2|ENSMUSG00000040022.15|RAB11 family interacting protein 2 (class I)
mm39_v1_chr11_-_95478517_95478561	0.2108562384218606	UCACAGU	ENSMUST00000000122.7|Ngfr|ENSMUSG00000000120.7|nerve growth factor receptor (TNFR superfamily, member 16)
mm39_v1_chr18_-_47501897_47501945	0.20764580618972808	UCACAGU	ENSMUST00000019791.14|Sema6a|ENSMUSG00000019647.17|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	ENSMUST00000115449.9|Sema6a|ENSMUSG00000019647.17|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm39_v1_chr11_+_31822211_31822263	0.20651056615473123	UCACAGU	ENSMUST00000020543.13|Cpeb4|ENSMUSG00000020300.15|cytoplasmic polyadenylation element binding protein 4	ENSMUST00000109412.9|Cpeb4|ENSMUSG00000020300.15|cytoplasmic polyadenylation element binding protein 4
mm39_v1_chr8_-_29709652_29709669	0.2051232484414907	UCACAGU	ENSMUST00000168630.4|Unc5d|ENSMUSG00000063626.7|unc-5 netrin receptor D
mm39_v1_chr2_+_102488985_102489014	0.2030020097588852	UCACAGU	ENSMUST00000080210.10|Slc1a2|ENSMUSG00000005089.16|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm39_v1_chr4_+_109264284_109264364	0.2026285843348337	UCACAGU	ENSMUST00000064129.14|Ttc39a|ENSMUSG00000028555.16|tetratricopeptide repeat domain 39A	ENSMUST00000106619.8|Ttc39a|ENSMUSG00000028555.16|tetratricopeptide repeat domain 39A
mm39_v1_chrX_-_12628309_12628318	0.20036097489099444	UCACAGU	ENSMUST00000096495.11|Med14|ENSMUSG00000064127.14|mediator complex subunit 14	ENSMUST00000076016.6|Med14|ENSMUSG00000064127.14|mediator complex subunit 14
mm39_v1_chr19_+_10872778_10872790	0.1993150170436368	UCACAGU	ENSMUST00000179297.3|Prpf19|ENSMUSG00000024735.14|pre-mRNA processing factor 19
mm39_v1_chr5_+_129578285_129578317	0.1966899692311672	UCACAGU	ENSMUST00000053737.9|Sfswap|ENSMUSG00000029439.15|splicing factor SWAP
mm39_v1_chr8_+_121215155_121215229	0.19477372939369775	UCACAGU	ENSMUST00000034279.16|Gse1|ENSMUSG00000031822.21|genetic suppressor element 1, coiled-coil protein
mm39_v1_chr2_-_162502994_162503067	0.19394803377295025	UCACAGU	ENSMUST00000109442.8|Ptprt|ENSMUSG00000053141.17|protein tyrosine phosphatase, receptor type, T	ENSMUST00000109445.9|Ptprt|ENSMUSG00000053141.17|protein tyrosine phosphatase, receptor type, T	ENSMUST00000109443.8|Ptprt|ENSMUSG00000053141.17|protein tyrosine phosphatase, receptor type, T	ENSMUST00000109441.2|Ptprt|ENSMUSG00000053141.17|protein tyrosine phosphatase, receptor type, T
mm39_v1_chr10_+_111808569_111808710	0.19347687772911928	UCACAGU	ENSMUST00000163048.8|Krr1|ENSMUSG00000063334.17|KRR1, small subunit (SSU) processome component, homolog (yeast)	ENSMUST00000174653.2|Krr1|ENSMUSG00000063334.17|KRR1, small subunit (SSU) processome component, homolog (yeast)
mm39_v1_chr2_-_75534985_75535023	0.19145352396653528	UCACAGU	ENSMUST00000102672.5|Nfe2l2|ENSMUSG00000015839.7|nuclear factor, erythroid derived 2, like 2
mm39_v1_chr18_-_55123153_55123238	0.19033936231134269	UCACAGU	ENSMUST00000064763.7|Zfp608|ENSMUSG00000052713.10|zinc finger protein 608
mm39_v1_chr5_-_107437427_107437514	0.18954208770011804	UCACAGU	ENSMUST00000031224.15|Tgfbr3|ENSMUSG00000029287.15|transforming growth factor, beta receptor III
mm39_v1_chr10_+_7708178_7708255	0.18885050172505097	UCACAGU	ENSMUST00000039484.6|Zc3h12d|ENSMUSG00000039981.7|zinc finger CCCH type containing 12D
mm39_v1_chr16_+_42727926_42728047	0.18460190356597936	UCACAGU	ENSMUST00000151244.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20	ENSMUST00000114694.9|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr12_+_83678987_83679099	0.18366557477800996	UCACAGU	ENSMUST00000048155.16|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25	ENSMUST00000182618.8|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25	ENSMUST00000183154.8|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25	ENSMUST00000182036.8|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25	ENSMUST00000182347.8|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25
mm39_v1_chr16_-_76170714_76170741	0.1824803556444952	UCACAGU	ENSMUST00000231585.2|Nrip1|ENSMUSG00000048490.15|nuclear receptor interacting protein 1	ENSMUST00000121927.8|Nrip1|ENSMUSG00000048490.15|nuclear receptor interacting protein 1
mm39_v1_chr16_+_33504829_33504842	0.181977112150398	UCACAGU	ENSMUST00000152782.8|Heg1|ENSMUSG00000075254.13|heart development protein with EGF-like domains 1
mm39_v1_chr10_+_7556948_7556990	0.1801647733192659	UCACAGU	ENSMUST00000165952.9|Lats1|ENSMUSG00000040021.14|large tumor suppressor
mm39_v1_chr14_-_45096827_45096839	0.17769628096557974	UCACAGU	ENSMUST00000095959.2|Ptgdr|ENSMUSG00000071489.2|prostaglandin D receptor
mm39_v1_chr5_+_150597204_150597269	0.17559222173274489	UCACAGU	ENSMUST00000202170.4|Pds5b|ENSMUSG00000034021.16|PDS5 cohesin associated factor B	ENSMUST00000016569.11|Pds5b|ENSMUSG00000034021.16|PDS5 cohesin associated factor B
mm39_v1_chr12_-_80159768_80159793	0.1740028799875802	UCACAGU	ENSMUST00000219642.2|Zfp36l1|ENSMUSG00000021127.8|zinc finger protein 36, C3H type-like 1	ENSMUST00000165114.2|Zfp36l1|ENSMUSG00000021127.8|zinc finger protein 36, C3H type-like 1	ENSMUST00000218835.2|Zfp36l1|ENSMUSG00000021127.8|zinc finger protein 36, C3H type-like 1	ENSMUST00000021552.3|Zfp36l1|ENSMUSG00000021127.8|zinc finger protein 36, C3H type-like 1
mm39_v1_chr19_-_34856853_34856864	0.1701590100857197	UCACAGU	ENSMUST00000036584.13|Pank1|ENSMUSG00000033610.17|pantothenate kinase 1
mm39_v1_chr2_-_51039112_51039127	0.17008595823974593	UCACAGU	ENSMUST00000154545.2|Rnd3|ENSMUSG00000017144.9|Rho family GTPase 3	ENSMUST00000017288.9|Rnd3|ENSMUSG00000017144.9|Rho family GTPase 3
mm39_v1_chr4_-_140867038_140867083	0.16927691322392138	UCACAGU	ENSMUST00000148204.8|Szrd1|ENSMUSG00000040842.18|SUZ RNA binding domain containing 1	ENSMUST00000102487.4|Szrd1|ENSMUSG00000040842.18|SUZ RNA binding domain containing 1
mm39_v1_chrX_+_84617624_84617756	0.16819436984195563	UCACAGU	ENSMUST00000048250.10|Tab3|ENSMUSG00000035476.10|TGF-beta activated kinase 1/MAP3K7 binding protein 3	ENSMUST00000137438.2|Tab3|ENSMUSG00000035476.10|TGF-beta activated kinase 1/MAP3K7 binding protein 3	ENSMUST00000146063.2|Tab3|ENSMUSG00000035476.10|TGF-beta activated kinase 1/MAP3K7 binding protein 3
mm39_v1_chr4_-_44167509_44167609	0.1648188259327388	UCACAGU	ENSMUST00000098098.9|Rnf38|ENSMUSG00000035696.16|ring finger protein 38
mm39_v1_chr14_-_65499835_65499941	0.15884222534214087	UCACAGU	ENSMUST00000131309.3|Fzd3|ENSMUSG00000007989.8|frizzled class receptor 3
mm39_v1_chr15_-_71599664_71599697	0.15751836757485743	UCACAGU	ENSMUST00000022953.10|Fam135b|ENSMUSG00000036800.9|family with sequence similarity 135, member B
mm39_v1_chr11_-_86248395_86248442	0.15492874022259648	UCACAGU	ENSMUST00000043624.9|Med13|ENSMUSG00000034297.15|mediator complex subunit 13
mm39_v1_chr3_+_109247938_109247976	0.15436629158191498	UCACAGU	ENSMUST00000046864.14|Vav3|ENSMUSG00000033721.17|vav 3 oncogene
mm39_v1_chr2_+_68691778_68691854	0.15401935982849516	UCACAGU	ENSMUST00000028426.9|Cers6|ENSMUSG00000027035.11|ceramide synthase 6
mm39_v1_chr3_-_116506294_116506302	0.14988348479195315	UCACAGU	ENSMUST00000029569.9|Slc35a3|ENSMUSG00000027957.14|solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3
mm39_v1_chr19_+_41471067_41471128	0.14973571189407978	UCACAGU	ENSMUST00000067795.13|Lcor|ENSMUSG00000025019.18|ligand dependent nuclear receptor corepressor
mm39_v1_chr18_+_86413077_86413094	0.1457448856253669	UCACAGU	ENSMUST00000058829.4|Neto1|ENSMUSG00000050321.4|neuropilin (NRP) and tolloid (TLL)-like 1
mm39_v1_chr17_+_15163446_15163463	0.14529372121432513	UCACAGU	ENSMUST00000052691.9|1600012H06Rik|ENSMUSG00000050088.10|RIKEN cDNA 1600012H06 gene
mm39_v1_chr1_-_132067404_132067430	0.14528977975487328	UCACAGU	ENSMUST00000027697.12|Cdk18|ENSMUSG00000026437.12|cyclin-dependent kinase 18
mm39_v1_chr4_+_126647563_126647628	0.14410787186608	UCACAGU	ENSMUST00000047431.11|AU040320|ENSMUSG00000028830.15|expressed sequence AU040320	ENSMUST00000102607.10|AU040320|ENSMUSG00000028830.15|expressed sequence AU040320	ENSMUST00000132660.2|AU040320|ENSMUSG00000028830.15|expressed sequence AU040320
mm39_v1_chr5_-_135573962_135573982	0.14360370870000747	UCACAGU	ENSMUST00000060311.12|Hip1|ENSMUSG00000039959.14|huntingtin interacting protein 1
mm39_v1_chr2_-_17735847_17735898	0.14340808308757813	UCACAGU	ENSMUST00000028080.12|Nebl|ENSMUSG00000053702.17|nebulette
mm39_v1_chr9_+_65816206_65816302	0.14311922473007002	UCACAGU	ENSMUST00000205379.2|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1	ENSMUST00000206048.2|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1	ENSMUST00000034949.10|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1	ENSMUST00000154589.2|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1
mm39_v1_chr2_-_39080701_39080762	0.14223362914001153	UCACAGU	ENSMUST00000142872.2|Scai|ENSMUSG00000035236.18|suppressor of cancer cell invasion	ENSMUST00000038874.12|Scai|ENSMUSG00000035236.18|suppressor of cancer cell invasion
mm39_v1_chr2_-_38955452_38955513	0.14212325308838947	UCACAGU	ENSMUST00000112850.9|Golga1|ENSMUSG00000026754.17|golgi autoantigen, golgin subfamily a, 1
mm39_v1_chr10_+_98750978_98751034	0.1395871586604834	UCACAGU	ENSMUST00000020107.8|Atp2b1|ENSMUSG00000019943.11|ATPase, Ca++ transporting, plasma membrane 1
mm39_v1_chr16_+_37909363_37909426	0.13786899997822288	UCACAGU	ENSMUST00000023507.13|Gsk3b|ENSMUSG00000022812.15|glycogen synthase kinase 3 beta
mm39_v1_chr17_+_26934617_26934698	0.13723079926842682	UCACAGU	ENSMUST00000062519.14|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000144221.2|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000142539.8|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000151681.2|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor
mm39_v1_chr14_-_30348153_30348174	0.13668742245301718	UCACAGU	ENSMUST00000112211.9|Prkcd|ENSMUSG00000021948.18|protein kinase C, delta	ENSMUST00000112210.11|Prkcd|ENSMUSG00000021948.18|protein kinase C, delta
mm39_v1_chrX_+_100342749_100342808	0.13468551205786697	UCACAGU	ENSMUST00000118111.8|Nlgn3|ENSMUSG00000031302.17|neuroligin 3	ENSMUST00000130555.8|Nlgn3|ENSMUSG00000031302.17|neuroligin 3	ENSMUST00000151528.8|Nlgn3|ENSMUSG00000031302.17|neuroligin 3
mm39_v1_chr6_-_83418656_83418666	0.13433496147067858	UCACAGU	ENSMUST00000089622.11|Tet3|ENSMUSG00000034832.16|tet methylcytosine dioxygenase 3
mm39_v1_chr10_-_121312212_121312252	0.13344403972979615	UCACAGU	ENSMUST00000026902.9|Rassf3|ENSMUSG00000025795.9|Ras association (RalGDS/AF-6) domain family member 3
mm39_v1_chr10_-_20600797_20600824	0.13005749704414776	UCACAGU	ENSMUST00000020165.14|Pde7b|ENSMUSG00000019990.16|phosphodiesterase 7B
mm39_v1_chr18_-_34139972_34140042	0.1300236049436261	UCACAGU	ENSMUST00000025234.7|Epb41l4a|ENSMUSG00000024376.8|erythrocyte membrane protein band 4.1 like 4a
mm39_v1_chr5_+_54155814_54155841	0.1295799542619301	UCACAGU	ENSMUST00000117661.9|Stim2|ENSMUSG00000039156.20|stromal interaction molecule 2
mm39_v1_chr14_+_25694594_25694657	0.1255449608102036	UCACAGU	ENSMUST00000022419.7|Ppif|ENSMUSG00000021868.8|peptidylprolyl isomerase F (cyclophilin F)
mm39_v1_chr11_+_104122216_104122279	0.12545187705562044	UCACAGU	ENSMUST00000106992.10|Mapt|ENSMUSG00000018411.18|microtubule-associated protein tau
mm39_v1_chr4_-_53159885_53159900	0.125062492337445	UCACAGU	ENSMUST00000030010.4|Abca1|ENSMUSG00000015243.5|ATP-binding cassette, sub-family A (ABC1), member 1
mm39_v1_chrX_+_40490005_40490181	0.12430218169457037	UCACAGU	ENSMUST00000115103.9|Gria3|ENSMUSG00000001986.17|glutamate receptor, ionotropic, AMPA3 (alpha 3)	ENSMUST00000076349.12|Gria3|ENSMUSG00000001986.17|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm39_v1_chr15_-_96358612_96358724	0.12241976651668708	UCACAGU	ENSMUST00000047835.8|Scaf11|ENSMUSG00000033228.9|SR-related CTD-associated factor 11
mm39_v1_chr3_+_89072096_89072172	0.12147448243125847	UCACAGU	ENSMUST00000121212.9|Clk2|ENSMUSG00000068917.13|CDC-like kinase 2	ENSMUST00000152205.5|Clk2|ENSMUSG00000068917.13|CDC-like kinase 2	ENSMUST00000090927.12|Clk2|ENSMUSG00000068917.13|CDC-like kinase 2	ENSMUST00000148265.8|Clk2|ENSMUSG00000068917.13|CDC-like kinase 2	ENSMUST00000121931.8|Clk2|ENSMUSG00000068917.13|CDC-like kinase 2
mm39_v1_chr15_+_81820954_81821038	0.12119749787218681	UCACAGU	ENSMUST00000038757.8|Csdc2|ENSMUSG00000042109.9|cold shock domain containing C2, RNA binding	ENSMUST00000230633.2|Csdc2|ENSMUSG00000042109.9|cold shock domain containing C2, RNA binding
mm39_v1_chr4_+_42916666_42916713	0.11994753445667589	UCACAGU	ENSMUST00000132173.8|Phf24|ENSMUSG00000036062.14|PHD finger protein 24	ENSMUST00000107975.8|Phf24|ENSMUSG00000036062.14|PHD finger protein 24
mm39_v1_chrX_-_161426624_161426661	0.11902385745953646	UCACAGU	ENSMUST00000112334.8|Reps2|ENSMUSG00000040855.16|RALBP1 associated Eps domain containing protein 2
mm39_v1_chr1_-_63153675_63153826	0.1183563974467284	UCACAGU	ENSMUST00000097718.9|Ino80d|ENSMUSG00000040865.16|INO80 complex subunit D
mm39_v1_chrX_+_41156713_41156751	0.11815848387539496	UCACAGU	ENSMUST00000115094.8|Xiap|ENSMUSG00000025860.16|X-linked inhibitor of apoptosis
mm39_v1_chr11_-_86435579_86435631	0.11796144590644946	UCACAGU	ENSMUST00000138810.3|Rps6kb1|ENSMUSG00000020516.16|ribosomal protein S6 kinase, polypeptide 1	ENSMUST00000058286.9|Rps6kb1|ENSMUSG00000020516.16|ribosomal protein S6 kinase, polypeptide 1	ENSMUST00000154617.8|Rps6kb1|ENSMUSG00000020516.16|ribosomal protein S6 kinase, polypeptide 1
mm39_v1_chr3_+_102965601_102965684	0.11646187002564223	UCACAGU	ENSMUST00000029445.13|Nras|ENSMUSG00000027852.15|neuroblastoma ras oncogene	ENSMUST00000200069.5|Nras|ENSMUSG00000027852.15|neuroblastoma ras oncogene
mm39_v1_chr12_+_71877838_71877948	0.11640871533420677	UCACAGU	ENSMUST00000223272.2|Daam1|ENSMUSG00000034574.11|dishevelled associated activator of morphogenesis 1	ENSMUST00000085299.4|Daam1|ENSMUSG00000034574.11|dishevelled associated activator of morphogenesis 1
mm39_v1_chr10_-_30531768_30531807	0.11389783821857559	UCACAGU	ENSMUST00000092610.12|Ncoa7|ENSMUSG00000039697.17|nuclear receptor coactivator 7
mm39_v1_chr6_-_53045546_53045640	0.11380228830345562	UCACAGU	ENSMUST00000074541.6|Jazf1|ENSMUSG00000063568.12|JAZF zinc finger 1
mm39_v1_chr16_-_4607848_4607862	0.11333414915608327	UCACAGU	ENSMUST00000004173.12|Cdip1|ENSMUSG00000004071.14|cell death inducing Trp53 target 1
mm39_v1_chr2_-_90900628_90900762	0.11258332021009089	UCACAGU	ENSMUST00000111436.3|Slc39a13|ENSMUSG00000002105.16|solute carrier family 39 (metal ion transporter), member 13	ENSMUST00000073575.12|Slc39a13|ENSMUSG00000002105.16|solute carrier family 39 (metal ion transporter), member 13
mm39_v1_chr7_-_131012202_131012250	0.11214092352591956	UCACAGU	ENSMUST00000207243.2|Ikzf5|ENSMUSG00000040167.17|IKAROS family zinc finger 5	ENSMUST00000128432.3|Ikzf5|ENSMUSG00000040167.17|IKAROS family zinc finger 5	ENSMUST00000121033.8|Ikzf5|ENSMUSG00000040167.17|IKAROS family zinc finger 5	ENSMUST00000046306.15|Ikzf5|ENSMUSG00000040167.17|IKAROS family zinc finger 5
mm39_v1_chr19_-_37184692_37184907	0.11190727660330127	UCACAGU	ENSMUST00000132580.8|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3	ENSMUST00000079754.11|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3	ENSMUST00000136286.8|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3	ENSMUST00000126188.8|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3	ENSMUST00000126781.2|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3
mm39_v1_chr6_+_113054314_113054343	0.11184877217214238	UCACAGU	ENSMUST00000042889.12|Setd5|ENSMUSG00000034269.13|SET domain containing 5
mm39_v1_chr8_+_69333143_69333216	0.10806322497168114	UCACAGU	ENSMUST00000015712.15|Lpl|ENSMUSG00000015568.17|lipoprotein lipase
mm39_v1_chr9_-_42035560_42035631	0.10714900747090542	UCACAGU	ENSMUST00000060989.9|Sorl1|ENSMUSG00000049313.9|sortilin-related receptor, LDLR class A repeats-containing
mm39_v1_chr10_+_88215079_88215164	0.10572089121264883	UCACAGU	ENSMUST00000130301.8|Gnptab|ENSMUSG00000035311.17|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	ENSMUST00000020251.10|Gnptab|ENSMUSG00000035311.17|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
mm39_v1_chr17_+_44114894_44114932	0.10544498676231845	UCACAGU	ENSMUST00000044895.13|Rcan2|ENSMUSG00000039601.17|regulator of calcineurin 2
mm39_v1_chr4_+_137589548_137589559	0.10530851395386101	UCACAGU	ENSMUST00000102518.10|Ece1|ENSMUSG00000057530.15|endothelin converting enzyme 1
mm39_v1_chr16_+_8647959_8647966	0.1048780164880164	UCACAGU	ENSMUST00000023150.7|1810013L24Rik|ENSMUSG00000022507.7|RIKEN cDNA 1810013L24 gene
mm39_v1_chr11_+_73158214_73158363	0.10360752380648618	UCACAGU	ENSMUST00000049676.3|Trpv3|ENSMUSG00000043029.3|transient receptor potential cation channel, subfamily V, member 3
mm39_v1_chr8_+_26092252_26092335	0.10138991268873374	UCACAGU	ENSMUST00000136107.9|Nsd3|ENSMUSG00000054823.18|nuclear receptor binding SET domain protein 3	ENSMUST00000146919.8|Nsd3|ENSMUSG00000054823.18|nuclear receptor binding SET domain protein 3	ENSMUST00000139966.8|Nsd3|ENSMUSG00000054823.18|nuclear receptor binding SET domain protein 3	ENSMUST00000142395.8|Nsd3|ENSMUSG00000054823.18|nuclear receptor binding SET domain protein 3	ENSMUST00000143445.2|Nsd3|ENSMUSG00000054823.18|nuclear receptor binding SET domain protein 3
mm39_v1_chr17_+_73225292_73225311	0.10097775649394654	UCACAGU	ENSMUST00000024857.14|Lbh|ENSMUSG00000024063.14|limb-bud and heart
mm39_v1_chr13_-_95386776_95386844	0.10068855905538986	UCACAGU	ENSMUST00000162153.9|Pde8b|ENSMUSG00000021684.18|phosphodiesterase 8B	ENSMUST00000160957.9|Pde8b|ENSMUSG00000021684.18|phosphodiesterase 8B	ENSMUST00000159598.2|Pde8b|ENSMUSG00000021684.18|phosphodiesterase 8B	ENSMUST00000162412.8|Pde8b|ENSMUSG00000021684.18|phosphodiesterase 8B
mm39_v1_chr6_-_28261881_28261942	0.1001556965900677	UCACAGU	ENSMUST00000115320.8|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800	ENSMUST00000123098.8|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800	ENSMUST00000115321.9|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800	ENSMUST00000155494.2|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800
mm39_v1_chr9_-_43151179_43151208	0.09795567178800975	UCACAGU	ENSMUST00000034512.7|Oaf|ENSMUSG00000032014.7|out at first homolog
mm39_v1_chr7_+_99876515_99876606	0.09792725140765186	UCACAGU	ENSMUST00000084935.11|Pgm2l1|ENSMUSG00000030729.18|phosphoglucomutase 2-like 1
mm39_v1_chr9_+_13573756_13573899	0.09752755287315479	UCACAGU	ENSMUST00000177755.3|Maml2|ENSMUSG00000031925.18|mastermind like transcriptional coactivator 2
mm39_v1_chr9_+_55234197_55234263	0.09746064687087087	UCACAGU	ENSMUST00000085754.10|Tmem266|ENSMUSG00000032313.12|transmembrane protein 266	ENSMUST00000034862.5|Tmem266|ENSMUSG00000032313.12|transmembrane protein 266
mm39_v1_chr5_+_93241287_93241310	0.09647361316743923	UCACAGU	ENSMUST00000074733.11|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000201700.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202196.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202308.4|Septin11|ENSMUSG00000058013.12|septin 11
mm39_v1_chr10_+_60182630_60182791	0.09626409756438108	UCACAGU	ENSMUST00000020301.14|Vsir|ENSMUSG00000020101.15|V-set immunoregulatory receptor	ENSMUST00000105460.8|Vsir|ENSMUSG00000020101.15|V-set immunoregulatory receptor	ENSMUST00000170507.8|Vsir|ENSMUSG00000020101.15|V-set immunoregulatory receptor
mm39_v1_chr5_-_73413888_73413979	0.09603181534082465	UCACAGU	ENSMUST00000101127.12|Fryl|ENSMUSG00000070733.14|FRY like transcription coactivator
mm39_v1_chr4_+_47353217_47353226	0.09587226503415966	UCACAGU	ENSMUST00000007757.15|Tgfbr1|ENSMUSG00000007613.16|transforming growth factor, beta receptor I
mm39_v1_chr1_+_60219724_60219797	0.09492451600201693	UCACAGU	ENSMUST00000160834.8|Nbeal1|ENSMUSG00000073664.12|neurobeachin like 1
mm39_v1_chr4_-_133066549_133066582	0.09322275557750252	UCACAGU	ENSMUST00000105906.2|Wdtc1|ENSMUSG00000037622.15|WD and tetratricopeptide repeats 1
mm39_v1_chr7_-_57036920_57036972	0.09312054177713032	UCACAGU	ENSMUST00000068911.13|Gabrg3|ENSMUSG00000055026.14|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3
mm39_v1_chr4_+_123798625_123798643	0.09121173413871024	UCACAGU	ENSMUST00000030400.14|Mycbp|ENSMUSG00000028647.14|MYC binding protein
mm39_v1_chr5_-_140634773_140634807	0.09113669763746077	UCACAGU	ENSMUST00000197452.5|Ttyh3|ENSMUSG00000036565.8|tweety family member 3	ENSMUST00000042661.8|Ttyh3|ENSMUSG00000036565.8|tweety family member 3
mm39_v1_chr1_-_14380418_14380463	0.09010357457650812	UCACAGU	ENSMUST00000027066.13|Eya1|ENSMUSG00000025932.15|EYA transcriptional coactivator and phosphatase 1	ENSMUST00000168081.9|Eya1|ENSMUSG00000025932.15|EYA transcriptional coactivator and phosphatase 1
mm39_v1_chr18_-_33596792_33596853	0.08991351988144801	UCACAGU	ENSMUST00000051087.16|Nrep|ENSMUSG00000042834.16|neuronal regeneration related protein
mm39_v1_chr5_-_92511136_92511156	0.08872678686922562	UCACAGU	ENSMUST00000077820.6|Cxcl11|ENSMUSG00000060183.7|chemokine (C-X-C motif) ligand 11
mm39_v1_chr16_-_58343789_58343883	0.08838974811632085	UCACAGU	ENSMUST00000137035.8|St3gal6|ENSMUSG00000022747.18|ST3 beta-galactoside alpha-2,3-sialyltransferase 6	ENSMUST00000149456.8|St3gal6|ENSMUSG00000022747.18|ST3 beta-galactoside alpha-2,3-sialyltransferase 6
mm39_v1_chr3_+_52175757_52175827	0.08815579704602472	UCACAGU	ENSMUST00000053764.7|Foxo1|ENSMUSG00000044167.7|forkhead box O1
mm39_v1_chr15_+_12824901_12824919	0.08767206977089137	UCACAGU	ENSMUST00000169061.8|Drosha|ENSMUSG00000022191.17|drosha, ribonuclease type III
mm39_v1_chrX_-_47543029_47543071	0.08747531792545415	UCACAGU	ENSMUST00000114958.8|Elf4|ENSMUSG00000031103.13|E74-like factor 4 (ets domain transcription factor)
mm39_v1_chr5_-_143717970_143718072	0.08663903130892676	UCACAGU	ENSMUST00000053287.6|Usp42|ENSMUSG00000051306.8|ubiquitin specific peptidase 42
mm39_v1_chr1_+_127701901_127701975	0.08631526379993172	UCACAGU	ENSMUST00000112570.2|Ccnt2|ENSMUSG00000026349.15|cyclin T2	ENSMUST00000027587.15|Ccnt2|ENSMUSG00000026349.15|cyclin T2
mm39_v1_chr4_+_32657105_32657167	0.08555719791913023	UCACAGU	ENSMUST00000071642.11|Mdn1|ENSMUSG00000058006.13|midasin AAA ATPase 1	ENSMUST00000178134.2|Mdn1|ENSMUSG00000058006.13|midasin AAA ATPase 1
mm39_v1_chr7_+_125871761_125871791	0.08466241986322143	UCACAGU	ENSMUST00000056028.11|Sbk1|ENSMUSG00000042978.12|SH3-binding kinase 1
mm39_v1_chr5_-_5315968_5316292	0.08335423035118167	UCACAGU	ENSMUST00000115451.8|Cdk14|ENSMUSG00000028926.16|cyclin-dependent kinase 14	ENSMUST00000115452.8|Cdk14|ENSMUSG00000028926.16|cyclin-dependent kinase 14	ENSMUST00000131392.8|Cdk14|ENSMUSG00000028926.16|cyclin-dependent kinase 14
mm39_v1_chr5_-_137784912_137784930	0.08309231952908488	UCACAGU	ENSMUST00000031740.16|Mepce|ENSMUSG00000029726.17|methylphosphate capping enzyme
mm39_v1_chr17_-_57338468_57338538	0.0829973818333683	UCACAGU	ENSMUST00000007814.10|Khsrp|ENSMUSG00000007670.11|KH-type splicing regulatory protein	ENSMUST00000233480.2|Khsrp|ENSMUSG00000007670.11|KH-type splicing regulatory protein
mm39_v1_chr7_+_4693759_4693927	0.08144325064656043	UCACAGU	ENSMUST00000048248.9|Brsk1|ENSMUSG00000035390.17|BR serine/threonine kinase 1
mm39_v1_chr7_+_122723365_122723446	0.08084114927178218	UCACAGU	ENSMUST00000205514.2|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a	ENSMUST00000094053.7|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a
mm39_v1_chr4_+_57434247_57434369	0.08036370474172552	UCACAGU	ENSMUST00000102905.8|Pakap|ENSMUSG00000090053.10|paralemmin A kinase anchor protein
mm39_v1_chr12_+_108145997_108146089	0.07975820853849476	UCACAGU	ENSMUST00000101055.5|Ccnk|ENSMUSG00000021258.11|cyclin K
mm39_v1_chr1_-_135513443_135513555	0.07948904823672842	UCACAGU	ENSMUST00000067414.13|Nav1|ENSMUSG00000009418.17|neuron navigator 1
mm39_v1_chr12_+_79075924_79076002	0.07938173411633685	UCACAGU	ENSMUST00000039928.7|Plekhh1|ENSMUSG00000060716.8|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1
mm39_v1_chr12_+_56742413_56742459	0.07758351580520265	UCACAGU	ENSMUST00000001538.10|Pax9|ENSMUSG00000001497.19|paired box 9
mm39_v1_chr16_+_33005426_33005537	0.07752465166039299	UCACAGU	ENSMUST00000232100.2|Osbpl11|ENSMUSG00000022807.10|oxysterol binding protein-like 11	ENSMUST00000232181.2|Osbpl11|ENSMUSG00000022807.10|oxysterol binding protein-like 11	ENSMUST00000039733.10|Osbpl11|ENSMUSG00000022807.10|oxysterol binding protein-like 11
mm39_v1_chr1_+_19279138_19279176	0.07745892277935863	UCACAGU	ENSMUST00000027059.11|Tfap2b|ENSMUSG00000025927.14|transcription factor AP-2 beta
mm39_v1_chr4_-_22488296_22488366	0.07613200345256077	UCACAGU	ENSMUST00000178174.3|Pou3f2|ENSMUSG00000095139.3|POU domain, class 3, transcription factor 2
mm39_v1_chr11_+_6496875_6496941	0.07604931913418286	UCACAGU	ENSMUST00000000388.15|Ccm2|ENSMUSG00000000378.16|cerebral cavernous malformation 2	ENSMUST00000159007.8|Ccm2|ENSMUSG00000000378.16|cerebral cavernous malformation 2
mm39_v1_chr6_+_141194886_141194995	0.07491715370639081	UCACAGU	ENSMUST00000043259.10|Pde3a|ENSMUSG00000041741.11|phosphodiesterase 3A, cGMP inhibited
mm39_v1_chr11_+_53241561_53241660	0.07445468081222022	UCACAGU	ENSMUST00000060945.12|Aff4|ENSMUSG00000049470.14|AF4/FMR2 family, member 4
mm39_v1_chr6_+_122851433_122851541	0.07288441306370831	UCACAGU	ENSMUST00000032477.6|Necap1|ENSMUSG00000030327.9|NECAP endocytosis associated 1
mm39_v1_chr5_-_76452365_76452398	0.07193826299642597	UCACAGU	ENSMUST00000075159.5|Clock|ENSMUSG00000029238.12|circadian locomotor output cycles kaput
mm39_v1_chr4_-_122854966_122854986	0.07169138284448232	UCACAGU	ENSMUST00000030408.12|Mfsd2a|ENSMUSG00000028655.12|major facilitator superfamily domain containing 2A	ENSMUST00000127047.2|Mfsd2a|ENSMUSG00000028655.12|major facilitator superfamily domain containing 2A
mm39_v1_chr7_+_30121147_30121167	0.07132505481494796	UCACAGU	ENSMUST00000108176.9|Nfkbid|ENSMUSG00000036931.16|nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta
mm39_v1_chr2_+_156262756_156262837	0.0710123238899771	UCACAGU	ENSMUST00000103137.10|Epb41l1|ENSMUSG00000027624.21|erythrocyte membrane protein band 4.1 like 1
mm39_v1_chr4_+_21776261_21776297	0.07083745579457322	UCACAGU	ENSMUST00000065111.15|Usp45|ENSMUSG00000040455.18|ubiquitin specific petidase 45	ENSMUST00000040429.12|Usp45|ENSMUSG00000040455.18|ubiquitin specific petidase 45	ENSMUST00000148304.8|Usp45|ENSMUSG00000040455.18|ubiquitin specific petidase 45
mm39_v1_chr5_-_22549688_22549708	0.07059342504736058	UCACAGU	ENSMUST00000062372.14|Reln|ENSMUSG00000042453.15|reelin	ENSMUST00000161356.8|Reln|ENSMUSG00000042453.15|reelin
mm39_v1_chr13_+_74157538_74157572	0.06999641733544582	UCACAGU	ENSMUST00000022057.9|Tppp|ENSMUSG00000021573.16|tubulin polymerization promoting protein
mm39_v1_chr6_-_134543876_134543959	0.06853676142564705	UCACAGU	ENSMUST00000032322.15|Lrp6|ENSMUSG00000030201.16|low density lipoprotein receptor-related protein 6	ENSMUST00000126836.4|Lrp6|ENSMUSG00000030201.16|low density lipoprotein receptor-related protein 6
mm39_v1_chr3_+_9315662_9315662	0.06768158520557993	UCACAGU	ENSMUST00000155203.2|Zbtb10|ENSMUSG00000069114.9|zinc finger and BTB domain containing 10
mm39_v1_chr3_+_61269059_61269059	0.06748200655426795	UCACAGU	ENSMUST00000049064.4|Rap2b|ENSMUSG00000036894.4|RAP2B, member of RAS oncogene family
mm39_v1_chr1_+_151631088_151631148	0.06675077690889468	UCACAGU	ENSMUST00000188145.7|Edem3|ENSMUSG00000043019.13|ER degradation enhancer, mannosidase alpha-like 3	ENSMUST00000059498.12|Edem3|ENSMUSG00000043019.13|ER degradation enhancer, mannosidase alpha-like 3
mm39_v1_chr10_+_126814542_126814618	0.0662504482322993	UCACAGU	ENSMUST00000105256.10|Ctdsp2|ENSMUSG00000078429.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
mm39_v1_chr2_-_154734824_154734855	0.06520147363083645	UCACAGU	ENSMUST00000099173.11|Eif2s2|ENSMUSG00000074656.13|eukaryotic translation initiation factor 2, subunit 2 (beta)
mm39_v1_chr6_+_91661034_91661058	0.06440579437874178	UCACAGU	ENSMUST00000032185.9|Slc6a6|ENSMUSG00000030096.9|solute carrier family 6 (neurotransmitter transporter, taurine), member 6
mm39_v1_chr14_+_47514368_47514406	0.06341493849324835	UCACAGU	ENSMUST00000065562.6|Socs4|ENSMUSG00000048379.10|suppressor of cytokine signaling 4
mm39_v1_chr18_+_61044830_61044852	0.06245886417475879	UCACAGU	ENSMUST00000040359.6|Arsi|ENSMUSG00000036412.6|arylsulfatase i
mm39_v1_chr18_+_31892933_31893026	0.06214843821651211	UCACAGU	ENSMUST00000115808.4|Ammecr1l|ENSMUSG00000041915.10|AMME chromosomal region gene 1-like
mm39_v1_chr2_-_163760603_163760603	0.06095461810835084	UCACAGU	ENSMUST00000044734.3|Rims4|ENSMUSG00000035226.6|regulating synaptic membrane exocytosis 4
mm39_v1_chr2_+_31530049_31530049	0.0609005138771363	UCACAGU	ENSMUST00000113470.3|Prdm12|ENSMUSG00000079466.3|PR domain containing 12
mm39_v1_chr17_+_29020064_29020108	0.06001110201730612	UCACAGU	ENSMUST00000004985.11|Brpf3|ENSMUSG00000063952.17|bromodomain and PHD finger containing, 3
mm39_v1_chr4_+_17853452_17853474	0.05862593144288678	UCACAGU	ENSMUST00000029881.10|Mmp16|ENSMUSG00000028226.16|matrix metallopeptidase 16
mm39_v1_chr10_-_7831979_7832035	0.058156991627315566	UCACAGU	ENSMUST00000146444.8|Tab2|ENSMUSG00000015755.17|TGF-beta activated kinase 1/MAP3K7 binding protein 2
mm39_v1_chr17_+_30224003_30224074	0.05804407962748608	UCACAGU	ENSMUST00000057897.10|Zfand3|ENSMUSG00000044477.13|zinc finger, AN1-type domain 3
mm39_v1_chr19_+_53128861_53128880	0.057780436031688455	UCACAGU	ENSMUST00000111741.10|Add3|ENSMUSG00000025026.16|adducin 3 (gamma)
mm39_v1_chr13_-_43457626_43457689	0.056967900220265315	UCACAGU	ENSMUST00000055341.7|Gfod1|ENSMUSG00000051335.7|glucose-fructose oxidoreductase domain containing 1
mm39_v1_chr7_-_109351399_109351497	0.05612441572948398	UCACAGU	ENSMUST00000128043.2|Tmem9b|ENSMUSG00000031021.14|TMEM9 domain family, member B	ENSMUST00000033333.13|Tmem9b|ENSMUSG00000031021.14|TMEM9 domain family, member B
mm39_v1_chr6_+_45036970_45037001	0.05591531992063516	UCACAGU	ENSMUST00000114641.8|Cntnap2|ENSMUSG00000039419.18|contactin associated protein-like 2
mm39_v1_chr17_-_24360516_24360569	0.05535656736338574	UCACAGU	ENSMUST00000115411.8|Pdpk1|ENSMUSG00000024122.17|3-phosphoinositide dependent protein kinase 1	ENSMUST00000115409.9|Pdpk1|ENSMUSG00000024122.17|3-phosphoinositide dependent protein kinase 1	ENSMUST00000115407.9|Pdpk1|ENSMUSG00000024122.17|3-phosphoinositide dependent protein kinase 1	ENSMUST00000102927.10|Pdpk1|ENSMUSG00000024122.17|3-phosphoinositide dependent protein kinase 1
mm39_v1_chr4_+_63133639_63133672	0.05471704452506537	UCACAGU	ENSMUST00000036300.13|Col27a1|ENSMUSG00000045672.16|collagen, type XXVII, alpha 1
mm39_v1_chr15_-_56557920_56557950	0.05470924013647117	UCACAGU	ENSMUST00000050544.8|Has2|ENSMUSG00000022367.8|hyaluronan synthase 2
mm39_v1_chr2_-_160950936_160950950	0.05446644215532201	UCACAGU	ENSMUST00000039782.14|Chd6|ENSMUSG00000057133.15|chromodomain helicase DNA binding protein 6	ENSMUST00000134178.8|Chd6|ENSMUSG00000057133.15|chromodomain helicase DNA binding protein 6
mm39_v1_chr13_+_46822992_46823022	0.05438304769244655	UCACAGU	ENSMUST00000099547.4|Fam8a1|ENSMUSG00000069237.9|family with sequence similarity 8, member A1
mm39_v1_chr2_+_92430043_92430069	0.054155593925736434	UCACAGU	ENSMUST00000065797.7|Chst1|ENSMUSG00000027221.6|carbohydrate sulfotransferase 1
mm39_v1_chr17_-_48235560_48235577	0.05363974098580597	UCACAGU	ENSMUST00000113265.8|Foxp4|ENSMUSG00000023991.17|forkhead box P4
mm39_v1_chr10_+_93871863_93871917	0.053353900884479236	UCACAGU	ENSMUST00000020208.5|Fgd6|ENSMUSG00000020021.5|FYVE, RhoGEF and PH domain containing 6
mm39_v1_chr2_+_32425327_32425371	0.05325831610152495	UCACAGU	ENSMUST00000133512.2|Fam102a|ENSMUSG00000039157.13|family with sequence similarity 102, member A	ENSMUST00000048375.6|Fam102a|ENSMUSG00000039157.13|family with sequence similarity 102, member A
mm39_v1_chr16_-_38370535_38370620	0.052992994491259625	UCACAGU	ENSMUST00000036210.7|Poglut1|ENSMUSG00000034064.15|protein O-glucosyltransferase 1
mm39_v1_chr11_+_53458188_53458353	0.052958841789862814	UCACAGU	ENSMUST00000057330.15|Kif3a|ENSMUSG00000018395.20|kinesin family member 3A	ENSMUST00000120613.9|Kif3a|ENSMUSG00000018395.20|kinesin family member 3A	ENSMUST00000173744.8|Kif3a|ENSMUSG00000018395.20|kinesin family member 3A	ENSMUST00000118353.9|Kif3a|ENSMUSG00000018395.20|kinesin family member 3A
mm39_v1_chr19_+_7471398_7471460	0.052083762949922154	UCACAGU	ENSMUST00000170373.9|Atl3|ENSMUSG00000024759.15|atlastin GTPase 3	ENSMUST00000236308.2|Atl3|ENSMUSG00000024759.15|atlastin GTPase 3	ENSMUST00000235557.2|Atl3|ENSMUSG00000024759.15|atlastin GTPase 3
mm39_v1_chr7_-_110213968_110214135	0.05183973729428332	UCACAGU	ENSMUST00000166020.8|Sbf2|ENSMUSG00000038371.16|SET binding factor 2	ENSMUST00000171218.8|Sbf2|ENSMUSG00000038371.16|SET binding factor 2	ENSMUST00000033058.14|Sbf2|ENSMUSG00000038371.16|SET binding factor 2	ENSMUST00000164759.8|Sbf2|ENSMUSG00000038371.16|SET binding factor 2
mm39_v1_chr5_+_118307754_118307813	0.05118295693920915	UCACAGU	ENSMUST00000054836.7|Hrk|ENSMUSG00000046607.7|harakiri, BCL2 interacting protein (contains only BH3 domain)
mm39_v1_chr2_-_167334746_167334812	0.050597500746025134	UCACAGU	ENSMUST00000109211.9|Spata2|ENSMUSG00000047030.16|spermatogenesis associated 2	ENSMUST00000057627.16|Spata2|ENSMUSG00000047030.16|spermatogenesis associated 2
mm39_v1_chr1_-_88629843_88629943	0.05043509226289211	UCACAGU	ENSMUST00000159814.2|Arl4c|ENSMUSG00000049866.13|ADP-ribosylation factor-like 4C
mm39_v1_chr13_+_48414582_48414704	0.04919450761429629	UCACAGU	ENSMUST00000021810.3|Id4|ENSMUSG00000021379.3|inhibitor of DNA binding 4
mm39_v1_chr2_-_59955995_59956119	0.04884868876299779	UCACAGU	ENSMUST00000112550.8|Baz2b|ENSMUSG00000026987.17|bromodomain adjacent to zinc finger domain, 2B
mm39_v1_chr17_+_25407352_25407392	0.048819413122943994	UCACAGU	ENSMUST00000039734.12|Unkl|ENSMUSG00000015127.15|unkempt family like zinc finger
mm39_v1_chr6_-_55658242_55658255	0.048403589295128384	UCACAGU	ENSMUST00000044767.10|Neurod6|ENSMUSG00000037984.10|neurogenic differentiation 6
mm39_v1_chr15_+_85619958_85620010	0.04805289877179983	UCACAGU	ENSMUST00000109422.8|Ppara|ENSMUSG00000022383.14|peroxisome proliferator activated receptor alpha
mm39_v1_chr17_+_50816296_50816431	0.047936458903320406	UCACAGU	ENSMUST00000043938.8|Plcl2|ENSMUSG00000038910.8|phospholipase C-like 2
mm39_v1_chr2_-_104324745_104324809	0.04743420441275324	UCACAGU	ENSMUST00000028600.14|Hipk3|ENSMUSG00000027177.15|homeodomain interacting protein kinase 3
mm39_v1_chr15_+_96185399_96185487	0.04722258929795769	UCACAGU	ENSMUST00000134985.9|Arid2|ENSMUSG00000033237.20|AT rich interactive domain 2 (ARID, RFX-like)	ENSMUST00000096250.5|Arid2|ENSMUSG00000033237.20|AT rich interactive domain 2 (ARID, RFX-like)
mm39_v1_chr3_+_86131970_86132025	0.04710791639548318	UCACAGU	ENSMUST00000192145.6|Lrba|ENSMUSG00000028080.17|LPS-responsive beige-like anchor	ENSMUST00000194759.6|Lrba|ENSMUSG00000028080.17|LPS-responsive beige-like anchor	ENSMUST00000107635.7|Lrba|ENSMUSG00000028080.17|LPS-responsive beige-like anchor
mm39_v1_chr14_-_122703089_122703089	0.04707623882413343	UCACAGU	ENSMUST00000039118.7|Zic5|ENSMUSG00000041703.8|zinc finger protein of the cerebellum 5
mm39_v1_chr10_+_107107477_107107557	0.04704663190008853	UCACAGU	ENSMUST00000020057.16|Lin7a|ENSMUSG00000019906.16|lin-7 homolog A (C. elegans)
mm39_v1_chr19_+_3817396_3817523	0.04640627646168895	UCACAGU	ENSMUST00000052699.13|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113974.11|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113972.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113973.8|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113977.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113968.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B
mm39_v1_chr5_-_124939428_124939488	0.04621315960974499	UCACAGU	ENSMUST00000036206.14|Ccdc92|ENSMUSG00000037979.14|coiled-coil domain containing 92
mm39_v1_chr5_+_65694552_65694576	0.046035061502644595	UCACAGU	ENSMUST00000142407.8|Ube2k|ENSMUSG00000029203.17|ubiquitin-conjugating enzyme E2K
mm39_v1_chr13_-_64422693_64422761	0.04505198353447744	UCACAGU	ENSMUST00000109770.2|Cdc14b|ENSMUSG00000033102.16|CDC14 cell division cycle 14B
mm39_v1_chr2_-_130480014_130480033	0.044004848080992795	UCACAGU	ENSMUST00000089561.10|Lzts3|ENSMUSG00000037703.15|leucine zipper, putative tumor suppressor family member 3	ENSMUST00000110260.8|Lzts3|ENSMUSG00000037703.15|leucine zipper, putative tumor suppressor family member 3
mm39_v1_chr11_+_92990110_92990156	0.04334414434626357	UCACAGU	ENSMUST00000107863.4|Car10|ENSMUSG00000056158.15|carbonic anhydrase 10
mm39_v1_chr10_+_121200984_121201063	0.04309294187542021	UCACAGU	ENSMUST00000040344.7|Gns|ENSMUSG00000034707.8|glucosamine (N-acetyl)-6-sulfatase
mm39_v1_chr4_-_132611820_132611835	0.04215154163252316	UCACAGU	ENSMUST00000030698.5|Stx12|ENSMUSG00000028879.5|syntaxin 12
mm39_v1_chr9_-_114393406_114393437	0.04107818163382881	UCACAGU	ENSMUST00000111816.3|Trim71|ENSMUSG00000079259.3|tripartite motif-containing 71
mm39_v1_chr11_-_65679101_65679147	0.04044001954580427	UCACAGU	ENSMUST00000152096.8|Map2k4|ENSMUSG00000033352.12|mitogen-activated protein kinase kinase 4	ENSMUST00000046963.10|Map2k4|ENSMUSG00000033352.12|mitogen-activated protein kinase kinase 4
mm39_v1_chr10_+_17931459_17931752	0.04008334357694949	UCACAGU	ENSMUST00000154718.8|Reps1|ENSMUSG00000019854.18|RalBP1 associated Eps domain containing protein	ENSMUST00000126390.8|Reps1|ENSMUSG00000019854.18|RalBP1 associated Eps domain containing protein	ENSMUST00000164556.8|Reps1|ENSMUSG00000019854.18|RalBP1 associated Eps domain containing protein	ENSMUST00000150029.8|Reps1|ENSMUSG00000019854.18|RalBP1 associated Eps domain containing protein
mm39_v1_chr7_-_70010341_70010494	0.03995406917595213	UCACAGU	ENSMUST00000032768.15|Nr2f2|ENSMUSG00000030551.15|nuclear receptor subfamily 2, group F, member 2
mm39_v1_chr4_+_62883796_62883854	0.039810542063157504	UCACAGU	ENSMUST00000030043.13|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618	ENSMUST00000107415.8|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618	ENSMUST00000064814.6|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618
mm39_v1_chr13_-_55718899_55718939	0.039082134874092914	UCACAGU	ENSMUST00000225240.3|Fam193b|ENSMUSG00000021495.11|family with sequence similarity 193, member B	ENSMUST00000021957.8|Fam193b|ENSMUSG00000021495.11|family with sequence similarity 193, member B
mm39_v1_chr5_-_24652775_24652852	0.03840252319904015	UCACAGU	ENSMUST00000123167.2|Tmub1|ENSMUSG00000028958.16|transmembrane and ubiquitin-like domain containing 1	ENSMUST00000030799.15|Tmub1|ENSMUSG00000028958.16|transmembrane and ubiquitin-like domain containing 1
mm39_v1_chr7_+_132532841_132532871	0.03726819369262837	UCACAGU	ENSMUST00000106157.8|Zranb1|ENSMUSG00000030967.16|zinc finger, RAN-binding domain containing 1
mm39_v1_chr4_+_65042411_65042411	0.037010363342746995	UCACAGU	ENSMUST00000084501.4|Pappa|ENSMUSG00000028370.8|pregnancy-associated plasma protein A
mm39_v1_chr15_-_83989801_83989955	0.036797416332833045	UCACAGU	ENSMUST00000229826.2|Sult4a1|ENSMUSG00000018865.10|sulfotransferase family 4A, member 1	ENSMUST00000082365.6|Sult4a1|ENSMUSG00000018865.10|sulfotransferase family 4A, member 1
mm39_v1_chrX_-_164110372_164110416	0.036729215729240504	UCACAGU	ENSMUST00000058787.9|Glra2|ENSMUSG00000018589.9|glycine receptor, alpha 2 subunit
mm39_v1_chr8_-_87611849_87611935	0.03654111550387308	UCACAGU	ENSMUST00000034074.8|N4bp1|ENSMUSG00000031652.12|NEDD4 binding protein 1
mm39_v1_chr2_-_125565307_125565457	0.03596242765389669	UCACAGU	ENSMUST00000042246.14|Shc4|ENSMUSG00000035109.15|SHC (Src homology 2 domain containing) family, member 4
mm39_v1_chr14_+_65596070_65596135	0.035473609302310465	UCACAGU	ENSMUST00000066994.7|Zfp395|ENSMUSG00000034522.11|zinc finger protein 395
mm39_v1_chr6_+_17463748_17463808	0.03531762715763441	UCACAGU	ENSMUST00000115443.8|Met|ENSMUSG00000009376.16|met proto-oncogene
mm39_v1_chr14_+_47120311_47120446	0.03523923849156048	UCACAGU	ENSMUST00000022386.15|Samd4|ENSMUSG00000021838.18|sterile alpha motif domain containing 4	ENSMUST00000228404.2|Samd4|ENSMUSG00000021838.18|sterile alpha motif domain containing 4	ENSMUST00000100672.11|Samd4|ENSMUSG00000021838.18|sterile alpha motif domain containing 4
mm39_v1_chr4_+_59805829_59805914	0.035136780916425116	UCACAGU	ENSMUST00000030080.7|Snx30|ENSMUSG00000028385.15|sorting nexin family member 30
mm39_v1_chr13_-_46881388_46881482	0.03504684316761088	UCACAGU	ENSMUST00000021803.10|Nup153|ENSMUSG00000021374.11|nucleoporin 153
mm39_v1_chr11_-_53371050_53371101	0.03489694656915366	UCACAGU	ENSMUST00000104955.4|Sowaha|ENSMUSG00000044352.7|sosondowah ankyrin repeat domain family member A
mm39_v1_chr4_+_12089373_12089441	0.03488588264251075	UCACAGU	ENSMUST00000095143.9|Rbm12b2|ENSMUSG00000052137.12|RNA binding motif protein 12 B2	ENSMUST00000063839.6|Rbm12b2|ENSMUSG00000052137.12|RNA binding motif protein 12 B2
mm39_v1_chr2_-_79959178_79959339	0.03430076792468709	UCACAGU	ENSMUST00000102654.11|Pde1a|ENSMUSG00000059173.20|phosphodiesterase 1A, calmodulin-dependent	ENSMUST00000102655.10|Pde1a|ENSMUSG00000059173.20|phosphodiesterase 1A, calmodulin-dependent
mm39_v1_chr11_+_49684984_49685014	0.034292295396684026	UCACAGU	ENSMUST00000020629.5|Gfpt2|ENSMUSG00000020363.7|glutamine fructose-6-phosphate transaminase 2
mm39_v1_chr4_+_114945905_114945966	0.03400423553017138	UCACAGU	ENSMUST00000171877.8|Pdzk1ip1|ENSMUSG00000028716.16|PDZK1 interacting protein 1	ENSMUST00000177647.8|Pdzk1ip1|ENSMUSG00000028716.16|PDZK1 interacting protein 1	ENSMUST00000106548.9|Pdzk1ip1|ENSMUSG00000028716.16|PDZK1 interacting protein 1	ENSMUST00000030488.3|Pdzk1ip1|ENSMUSG00000028716.16|PDZK1 interacting protein 1
mm39_v1_chr2_+_124452493_124452534	0.033770834151510665	UCACAGU	ENSMUST00000103239.10|Sema6d|ENSMUSG00000027200.18|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	ENSMUST00000103240.9|Sema6d|ENSMUSG00000027200.18|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm39_v1_chr1_+_134637031_134637056	0.03276420431906383	UCACAGU	ENSMUST00000121990.2|Syt2|ENSMUSG00000026452.16|synaptotagmin II
mm39_v1_chr14_+_60872167_60872226	0.03261670935409874	UCACAGU	ENSMUST00000022566.14|Spata13|ENSMUSG00000021990.17|spermatogenesis associated 13	ENSMUST00000159729.2|Spata13|ENSMUSG00000021990.17|spermatogenesis associated 13
mm39_v1_chr5_+_76736514_76736570	0.032485628287372434	UCACAGU	ENSMUST00000121979.8|Cep135|ENSMUSG00000036403.16|centrosomal protein 135
mm39_v1_chr15_-_73056713_73056822	0.032374568921909284	UCACAGU	ENSMUST00000044113.12|Ago2|ENSMUSG00000036698.12|argonaute RISC catalytic subunit 2
mm39_v1_chr12_+_55646209_55646214	0.03224751946380532	UCACAGU	ENSMUST00000051857.5|Insm2|ENSMUSG00000045440.5|insulinoma-associated 2
mm39_v1_chr7_-_73191484_73191503	0.03214901048668045	UCACAGU	ENSMUST00000197642.2|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2	ENSMUST00000026895.14|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2	ENSMUST00000169922.9|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2
mm39_v1_chr16_+_90182895_90182910	0.03062477729664909	UCACAGU	ENSMUST00000065856.8|Hunk|ENSMUSG00000053414.9|hormonally upregulated Neu-associated kinase
mm39_v1_chr2_-_163486998_163487064	0.030350033346648403	UCACAGU	ENSMUST00000017851.4|Serinc3|ENSMUSG00000017707.10|serine incorporator 3
mm39_v1_chr7_+_141503719_141503823	0.03033250412767221	UCACAGU	ENSMUST00000105989.9|Brsk2|ENSMUSG00000053046.17|BR serine/threonine kinase 2	ENSMUST00000075528.12|Brsk2|ENSMUSG00000053046.17|BR serine/threonine kinase 2	ENSMUST00000174499.8|Brsk2|ENSMUSG00000053046.17|BR serine/threonine kinase 2
mm39_v1_chr7_-_134539993_134540159	0.02970021877338524	UCACAGU	ENSMUST00000171394.3|Insyn2a|ENSMUSG00000073805.6|inhibitory synaptic factor 2A
mm39_v1_chr7_-_68398989_68398998	0.029404036621430398	UCACAGU	ENSMUST00000048068.15|Arrdc4|ENSMUSG00000042659.16|arrestin domain containing 4
mm39_v1_chr2_+_90770742_90770888	0.0289802809166063	UCACAGU	ENSMUST00000005643.14|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1	ENSMUST00000111451.10|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1	ENSMUST00000177642.8|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1	ENSMUST00000068726.13|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1	ENSMUST00000068747.14|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1
mm39_v1_chr6_-_39702381_39702413	0.028293323928130134	UCACAGU	ENSMUST00000002487.15|Braf|ENSMUSG00000002413.16|Braf transforming gene
mm39_v1_chr10_-_86334700_86334730	0.02827398168321206	UCACAGU	ENSMUST00000120638.8|Syn3|ENSMUSG00000059602.15|synapsin III
mm39_v1_chr11_-_3454766_3454834	0.028067730929542775	UCACAGU	ENSMUST00000044507.12|Inpp5j|ENSMUSG00000034570.13|inositol polyphosphate 5-phosphatase J
mm39_v1_chr19_+_46587523_46587617	0.02785485069019249	UCACAGU	ENSMUST00000138302.9|Wbp1l|ENSMUSG00000047731.18|WW domain binding protein 1 like	ENSMUST00000099376.11|Wbp1l|ENSMUSG00000047731.18|WW domain binding protein 1 like
mm39_v1_chr8_+_111448092_111448118	0.027433750938069195	UCACAGU	ENSMUST00000052457.15|Mtss2|ENSMUSG00000033763.15|MTSS I-BAR domain containing 2
mm39_v1_chr8_-_40964704_40964797	0.0261944188042282	UCACAGU	ENSMUST00000135269.8|Cnot7|ENSMUSG00000031601.17|CCR4-NOT transcription complex, subunit 7	ENSMUST00000034012.10|Cnot7|ENSMUSG00000031601.17|CCR4-NOT transcription complex, subunit 7
mm39_v1_chr3_+_30847024_30847024	0.02565532442659072	UCACAGU	ENSMUST00000029256.9|Sec62|ENSMUSG00000027706.9|SEC62 homolog (S. cerevisiae)
mm39_v1_chr2_+_151544086_151544231	0.025520563316176414	UCACAGU	ENSMUST00000109872.2|Tmem74b|ENSMUSG00000044364.6|transmembrane protein 74B
mm39_v1_chr4_-_152402915_152403111	0.024472703167749656	UCACAGU	ENSMUST00000170820.3|Rnf207|ENSMUSG00000058498.13|ring finger protein 207	ENSMUST00000076183.12|Rnf207|ENSMUSG00000058498.13|ring finger protein 207
mm39_v1_chr12_-_75782502_75782511	0.024353954436869784	UCACAGU	ENSMUST00000021450.6|Sgpp1|ENSMUSG00000021054.7|sphingosine-1-phosphate phosphatase 1
mm39_v1_chr6_+_54658609_54658770	0.023740497076396517	UCACAGU	ENSMUST00000190641.7|Mturn|ENSMUSG00000038065.14|maturin, neural progenitor differentiation regulator homolog (Xenopus)	ENSMUST00000187701.2|Mturn|ENSMUSG00000038065.14|maturin, neural progenitor differentiation regulator homolog (Xenopus)
mm39_v1_chr7_+_126376099_126376256	0.023646004135323532	UCACAGU	ENSMUST00000038614.12|Ypel3|ENSMUSG00000042675.16|yippee like 3	ENSMUST00000170882.8|Ypel3|ENSMUSG00000042675.16|yippee like 3	ENSMUST00000106359.2|Ypel3|ENSMUSG00000042675.16|yippee like 3	ENSMUST00000106357.8|Ypel3|ENSMUSG00000042675.16|yippee like 3	ENSMUST00000145762.8|Ypel3|ENSMUSG00000042675.16|yippee like 3
mm39_v1_chr16_+_27207599_27207619	0.02333730662261322	UCACAGU	ENSMUST00000239351.2|Ccdc50|ENSMUSG00000038127.16|coiled-coil domain containing 50	ENSMUST00000100026.10|Ccdc50|ENSMUSG00000038127.16|coiled-coil domain containing 50
mm39_v1_chr9_-_58943670_58943743	0.023292659813912632	UCACAGU	ENSMUST00000214547.2|Neo1|ENSMUSG00000032340.9|neogenin	ENSMUST00000068664.7|Neo1|ENSMUSG00000032340.9|neogenin
mm39_v1_chr11_+_87482971_87483055	0.023284894984740467	UCACAGU	ENSMUST00000103179.10|Mtmr4|ENSMUSG00000018401.18|myotubularin related protein 4	ENSMUST00000092802.12|Mtmr4|ENSMUSG00000018401.18|myotubularin related protein 4	ENSMUST00000146871.8|Mtmr4|ENSMUSG00000018401.18|myotubularin related protein 4
mm39_v1_chr17_+_33743144_33743218	0.023227658243954334	UCACAGU	ENSMUST00000087623.13|Adamts10|ENSMUSG00000024299.18|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	ENSMUST00000234715.2|Adamts10|ENSMUSG00000024299.18|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	ENSMUST00000234497.2|Adamts10|ENSMUSG00000024299.18|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10
mm39_v1_chr1_-_184731672_184731767	0.023024165473342822	UCACAGU	ENSMUST00000192657.2|Mark1|ENSMUSG00000026620.12|MAP/microtubule affinity regulating kinase 1	ENSMUST00000027929.10|Mark1|ENSMUSG00000026620.12|MAP/microtubule affinity regulating kinase 1
mm39_v1_chr6_+_31375670_31375795	0.022572338113205127	UCACAGU	ENSMUST00000026699.15|Mkln1|ENSMUSG00000025609.16|muskelin 1, intracellular mediator containing kelch motifs
mm39_v1_chr7_-_97387145_97387191	0.0222607910536175	UCACAGU	ENSMUST00000084986.8|Aqp11|ENSMUSG00000042797.10|aquaporin 11
mm39_v1_chr2_-_120394288_120394350	0.021915935436203706	UCACAGU	ENSMUST00000055241.13|Zfp106|ENSMUSG00000027288.17|zinc finger protein 106	ENSMUST00000135625.8|Zfp106|ENSMUSG00000027288.17|zinc finger protein 106
mm39_v1_chr11_-_88609048_88609136	0.021639539163066917	UCACAGU	ENSMUST00000107909.8|Msi2|ENSMUSG00000069769.14|musashi RNA-binding protein 2
mm39_v1_chr16_-_4815645_4815716	0.01981902662021733	UCACAGU	ENSMUST00000229321.2|Septin12|ENSMUSG00000022542.8|septin 12	ENSMUST00000230362.2|Septin12|ENSMUSG00000022542.8|septin 12	ENSMUST00000170323.3|Septin12|ENSMUSG00000022542.8|septin 12
mm39_v1_chr17_-_25789652_25789670	0.01956569665532624	UCACAGU	ENSMUST00000025003.10|Sox8|ENSMUSG00000024176.11|SRY (sex determining region Y)-box 8	ENSMUST00000173447.2|Sox8|ENSMUSG00000024176.11|SRY (sex determining region Y)-box 8
mm39_v1_chr6_+_97783975_97784028	0.019551838806856854	UCACAGU	ENSMUST00000203884.3|Mitf|ENSMUSG00000035158.16|melanogenesis associated transcription factor	ENSMUST00000043637.14|Mitf|ENSMUSG00000035158.16|melanogenesis associated transcription factor
mm39_v1_chr1_-_132953068_132953154	0.01954278916177724	UCACAGU	ENSMUST00000186617.7|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000067429.10|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000067398.13|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000188090.7|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4
mm39_v1_chr7_+_57069417_57069440	0.019166118551544795	UCACAGU	ENSMUST00000085240.11|Gabrb3|ENSMUSG00000033676.14|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
mm39_v1_chr1_+_171097891_171097935	0.01883674230772587	UCACAGU	ENSMUST00000064272.10|B4galt3|ENSMUSG00000052423.16|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	ENSMUST00000151863.8|B4galt3|ENSMUSG00000052423.16|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	ENSMUST00000141999.8|B4galt3|ENSMUSG00000052423.16|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	ENSMUST00000111313.10|B4galt3|ENSMUSG00000052423.16|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	ENSMUST00000126699.4|B4galt3|ENSMUSG00000052423.16|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3
mm39_v1_chr6_+_87019819_87019900	0.018656782234681164	UCACAGU	ENSMUST00000113657.8|Gfpt1|ENSMUSG00000029992.15|glutamine fructose-6-phosphate transaminase 1	ENSMUST00000113658.8|Gfpt1|ENSMUSG00000029992.15|glutamine fructose-6-phosphate transaminase 1	ENSMUST00000113655.8|Gfpt1|ENSMUSG00000029992.15|glutamine fructose-6-phosphate transaminase 1	ENSMUST00000032057.8|Gfpt1|ENSMUSG00000029992.15|glutamine fructose-6-phosphate transaminase 1
mm39_v1_chr19_+_46750016_46750057	0.01852225745145448	UCACAGU	ENSMUST00000099373.12|Cnnm2|ENSMUSG00000064105.14|cyclin M2	ENSMUST00000077666.6|Cnnm2|ENSMUSG00000064105.14|cyclin M2
mm39_v1_chrX_-_110606766_110606834	0.018186012393289014	UCACAGU	ENSMUST00000113422.9|Hdx|ENSMUSG00000034551.13|highly divergent homeobox	ENSMUST00000038472.7|Hdx|ENSMUSG00000034551.13|highly divergent homeobox
mm39_v1_chr6_+_37847721_37847892	0.017874186082675547	UCACAGU	ENSMUST00000031859.14|Trim24|ENSMUSG00000029833.18|tripartite motif-containing 24	ENSMUST00000120428.8|Trim24|ENSMUSG00000029833.18|tripartite motif-containing 24
mm39_v1_chr3_-_104127676_104127695	0.017575133357249403	UCACAGU	ENSMUST00000064371.14|Magi3|ENSMUSG00000052539.16|membrane associated guanylate kinase, WW and PDZ domain containing 3
mm39_v1_chr9_+_74944896_74944983	0.01731468938606839	UCACAGU	ENSMUST00000168166.8|Arpp19|ENSMUSG00000007656.14|cAMP-regulated phosphoprotein 19	ENSMUST00000169492.8|Arpp19|ENSMUSG00000007656.14|cAMP-regulated phosphoprotein 19	ENSMUST00000170308.8|Arpp19|ENSMUSG00000007656.14|cAMP-regulated phosphoprotein 19
mm39_v1_chr13_-_113755082_113755101	0.016962123571126194	UCACAGU	ENSMUST00000109241.5|Snx18|ENSMUSG00000042364.12|sorting nexin 18
mm39_v1_chr19_+_8734463_8734490	0.016467464901024447	UCACAGU	ENSMUST00000184970.9|Nxf1|ENSMUSG00000010097.16|nuclear RNA export factor 1
mm39_v1_chr10_+_83379805_83379873	0.0161555774107574	UCACAGU	ENSMUST00000038388.7|Washc4|ENSMUSG00000034560.7|WASH complex subunit 4
mm39_v1_chr2_-_20973692_20973768	0.01591738200458649	UCACAGU	ENSMUST00000114594.8|Arhgap21|ENSMUSG00000036591.17|Rho GTPase activating protein 21
mm39_v1_chr19_+_8641369_8641484	0.013846448871183347	UCACAGU	ENSMUST00000035444.10|Chrm1|ENSMUSG00000032773.10|cholinergic receptor, muscarinic 1, CNS	ENSMUST00000163785.2|Chrm1|ENSMUSG00000032773.10|cholinergic receptor, muscarinic 1, CNS
mm39_v1_chr2_-_167503416_167503502	0.013684340266636563	UCACAGU	ENSMUST00000125544.3|Gm20431|ENSMUSG00000089739.3|predicted gene 20431	ENSMUST00000006587.7|Tmem189|ENSMUSG00000090213.2|transmembrane protein 189
mm39_v1_chr15_+_6737853_6737883	0.01300005900261414	UCACAGU	ENSMUST00000061656.8|Rictor|ENSMUSG00000050310.10|RPTOR independent companion of MTOR, complex 2
mm39_v1_chr14_+_4230569_4230642	0.012316701233256698	UCACAGU	ENSMUST00000090543.6|Nr1d2|ENSMUSG00000021775.12|nuclear receptor subfamily 1, group D, member 2
mm39_v1_chr16_-_3690243_3690275	0.012223547789731923	UCACAGU	ENSMUST00000090522.5|Zfp597|ENSMUSG00000039789.8|zinc finger protein 597
mm39_v1_chr1_+_74324089_74324231	0.012152526124585705	UCACAGU	ENSMUST00000113805.8|Pnkd|ENSMUSG00000026179.15|paroxysmal nonkinesiogenic dyskinesia	ENSMUST00000027370.13|Pnkd|ENSMUSG00000026179.15|paroxysmal nonkinesiogenic dyskinesia	ENSMUST00000087226.11|Pnkd|ENSMUSG00000026179.15|paroxysmal nonkinesiogenic dyskinesia
mm39_v1_chr6_+_92068361_92068371	0.011443397762510433	UCACAGU	ENSMUST00000113460.8|Nr2c2|ENSMUSG00000005893.15|nuclear receptor subfamily 2, group C, member 2
mm39_v1_chr2_-_65068960_65068988	0.011188198739494339	UCACAGU	ENSMUST00000112429.9|Cobll1|ENSMUSG00000034903.19|Cobl-like 1	ENSMUST00000102726.8|Cobll1|ENSMUSG00000034903.19|Cobl-like 1	ENSMUST00000112430.8|Cobll1|ENSMUSG00000034903.19|Cobl-like 1
mm39_v1_chr10_-_80861239_80861246	0.010872517608597256	UCACAGU	ENSMUST00000055125.5|Diras1|ENSMUSG00000043670.5|DIRAS family, GTP-binding RAS-like 1
mm39_v1_chr2_-_85027041_85027051	0.01068538455169101	UCACAGU	ENSMUST00000099930.9|Lrrc55|ENSMUSG00000075224.11|leucine rich repeat containing 55	ENSMUST00000111601.2|Lrrc55|ENSMUSG00000075224.11|leucine rich repeat containing 55
mm39_v1_chr15_-_77813123_77813220	0.010378909220108541	UCACAGU	ENSMUST00000109748.9|Txn2|ENSMUSG00000005354.17|thioredoxin 2	ENSMUST00000109747.9|Txn2|ENSMUSG00000005354.17|thioredoxin 2	ENSMUST00000100486.6|Txn2|ENSMUSG00000005354.17|thioredoxin 2	ENSMUST00000005487.12|Txn2|ENSMUSG00000005354.17|thioredoxin 2
mm39_v1_chr4_-_45530330_45530330	0.009906062738616786	UCACAGU	ENSMUST00000061986.12|Shb|ENSMUSG00000044813.16|src homology 2 domain-containing transforming protein B
mm39_v1_chr15_-_13173736_13173791	0.009578990440500508	UCACAGU	ENSMUST00000036439.6|Cdh6|ENSMUSG00000039385.6|cadherin 6
mm39_v1_chr11_+_52655461_52655520	0.009344359756057808	UCACAGU	ENSMUST00000036796.8|Fstl4|ENSMUSG00000036264.10|follistatin-like 4
mm39_v1_chr17_+_28128307_28128532	0.009277060744401648	UCACAGU	ENSMUST00000233525.2|Anks1|ENSMUSG00000024219.17|ankyrin repeat and SAM domain containing 1	ENSMUST00000025058.15|Anks1|ENSMUSG00000024219.17|ankyrin repeat and SAM domain containing 1	ENSMUST00000233866.2|Anks1|ENSMUSG00000024219.17|ankyrin repeat and SAM domain containing 1
mm39_v1_chr6_-_58884038_58884083	0.009053494456278477	UCACAGU	ENSMUST00000059539.5|Nap1l5|ENSMUSG00000055430.5|nucleosome assembly protein 1-like 5
mm39_v1_chr12_-_14202041_14202070	0.008528727509460215	UCACAGU	ENSMUST00000020926.8|Lratd1|ENSMUSG00000020607.8|LRAT domain containing 1
mm39_v1_chr2_-_103133524_103133623	0.007551012523121617	UCACAGU	ENSMUST00000090475.10|Ehf|ENSMUSG00000012350.16|ets homologous factor
mm39_v1_chr10_+_58091287_58091361	0.007472905944714912	UCACAGU	ENSMUST00000057659.14|Gcc2|ENSMUSG00000038039.14|GRIP and coiled-coil domain containing 2	ENSMUST00000162041.8|Gcc2|ENSMUSG00000038039.14|GRIP and coiled-coil domain containing 2	ENSMUST00000162860.8|Gcc2|ENSMUSG00000038039.14|GRIP and coiled-coil domain containing 2
mm39_v1_chr18_+_51250748_51250822	0.007289824580503208	UCACAGU	ENSMUST00000116639.4|Prr16|ENSMUSG00000073565.6|proline rich 16
mm39_v1_chr18_+_32296126_32296249	0.006971668934992421	UCACAGU	ENSMUST00000096575.5|Map3k2|ENSMUSG00000024383.10|mitogen-activated protein kinase kinase kinase 2
mm39_v1_chrX_-_154406321_154406321	0.00656162316469501	UCACAGU	ENSMUST00000038665.6|Ptchd1|ENSMUSG00000041552.8|patched domain containing 1
mm39_v1_chr2_+_49509288_49509355	0.006179366097020348	UCACAGU	ENSMUST00000028102.14|Kif5c|ENSMUSG00000026764.16|kinesin family member 5C
mm39_v1_chr1_-_13062873_13062892	0.005769204684283405	UCACAGU	ENSMUST00000188454.7|Slco5a1|ENSMUSG00000025938.17|solute carrier organic anion transporter family, member 5A1
mm39_v1_chr10_-_23225781_23225817	0.005420943193056709	UCACAGU	ENSMUST00000092665.12|Eya4|ENSMUSG00000010461.17|EYA transcriptional coactivator and phosphatase 4
mm39_v1_chr18_-_9450097_9450174	0.005258615701943838	UCACAGU	ENSMUST00000053917.6|Ccny|ENSMUSG00000024286.9|cyclin Y
mm39_v1_chr15_-_103275190_103275225	0.005012011091494931	UCACAGU	ENSMUST00000023128.8|Itga5|ENSMUSG00000000555.9|integrin alpha 5 (fibronectin receptor alpha)
mm39_v1_chr13_+_55357585_55357602	0.0050063392739380114	UCACAGU	ENSMUST00000224973.2|Nsd1|ENSMUSG00000021488.9|nuclear receptor-binding SET-domain protein 1	ENSMUST00000099490.3|Nsd1|ENSMUSG00000021488.9|nuclear receptor-binding SET-domain protein 1
mm39_v1_chrX_-_100266032_100266169	0.004949761321173521	UCACAGU	ENSMUST00000120389.8|Snx12|ENSMUSG00000046032.17|sorting nexin 12	ENSMUST00000156473.8|Snx12|ENSMUSG00000046032.17|sorting nexin 12	ENSMUST00000077876.4|Snx12|ENSMUSG00000046032.17|sorting nexin 12
mm39_v1_chr7_-_35453818_35453879	0.004756840502954172	UCACAGU	ENSMUST00000051377.15|Dpy19l3|ENSMUSG00000043671.15|dpy-19-like 3 (C. elegans)
mm39_v1_chr19_+_25587896_25587919	0.004464454518970948	UCACAGU	ENSMUST00000048935.6|Dmrt3|ENSMUSG00000042372.6|doublesex and mab-3 related transcription factor 3
mm39_v1_chr1_+_153528689_153528771	0.004271129600772686	UCACAGU	ENSMUST00000041776.12|Rgs8|ENSMUSG00000042671.13|regulator of G-protein signaling 8
mm39_v1_chr6_-_115971914_115971971	0.0041463287499678755	UCACAGU	ENSMUST00000015511.15|Plxnd1|ENSMUSG00000030123.16|plexin D1
mm39_v1_chr9_-_4796217_4796267	0.003912078070056603	UCACAGU	ENSMUST00000027020.13|Gria4|ENSMUSG00000025892.17|glutamate receptor, ionotropic, AMPA4 (alpha 4)	ENSMUST00000163309.2|Gria4|ENSMUSG00000025892.17|glutamate receptor, ionotropic, AMPA4 (alpha 4)
mm39_v1_chr4_+_49059255_49059331	0.003695493614276937	UCACAGU	ENSMUST00000076670.3|Plppr1|ENSMUSG00000063446.5|phospholipid phosphatase related 1
mm39_v1_chr12_+_8997929_8997979	0.0035559041387433115	UCACAGU	ENSMUST00000020899.5|Matn3|ENSMUSG00000020583.5|matrilin 3
mm39_v1_chr3_-_89245297_89245374	0.0034182917388782207	UCACAGU	ENSMUST00000029674.8|Efna4|ENSMUSG00000028040.8|ephrin A4
mm39_v1_chr6_-_18030584_18030584	0.002886252681634283	UCACAGU	ENSMUST00000010941.6|Wnt2|ENSMUSG00000010797.7|wingless-type MMTV integration site family, member 2
mm39_v1_chr17_-_80022463_80022476	0.0026422596262178247	UCACAGU	ENSMUST00000024894.2|Cyp1b1|ENSMUSG00000024087.5|cytochrome P450, family 1, subfamily b, polypeptide 1
mm39_v1_chr11_-_75060345_75060345	0.002436801238430544	UCACAGU	ENSMUST00000055619.5|Hic1|ENSMUSG00000043099.5|hypermethylated in cancer 1
mm39_v1_chr11_-_59181573_59181584	0.002372966337989752	UCACAGU	ENSMUST00000010044.8|Wnt3a|ENSMUSG00000009900.8|wingless-type MMTV integration site family, member 3A
mm39_v1_chr1_-_155617773_155617790	0.002241538861752928	UCACAGU	ENSMUST00000027740.14|Lhx4|ENSMUSG00000026468.15|LIM homeobox protein 4
mm39_v1_chr2_+_14609063_14609117	0.002079574381172259	UCACAGU	ENSMUST00000114723.9|Cacnb2|ENSMUSG00000057914.16|calcium channel, voltage-dependent, beta 2 subunit
mm39_v1_chr10_-_53627201_53627219	0.002003078261616217	UCACAGU	ENSMUST00000020003.15|Fam184a|ENSMUSG00000019856.15|family with sequence similarity 184, member A
mm39_v1_chr10_-_105410280_105410313	0.001383835012796236	UCACAGU	ENSMUST00000061506.9|Tmtc2|ENSMUSG00000036019.9|transmembrane and tetratricopeptide repeat containing 2
mm39_v1_chr10_+_80015316_80015375	0.001333519587726144	UCACAGU	ENSMUST00000003154.7|Efna2|ENSMUSG00000003070.7|ephrin A2
mm39_v1_chr3_+_152101618_152101697	0.00117595617493673	UCACAGU	ENSMUST00000106100.9|Zzz3|ENSMUSG00000039068.17|zinc finger, ZZ domain containing 3
mm39_v1_chrX_-_104973003_104973014	0.0011172142079385163	UCACAGU	ENSMUST00000130980.2|Atrx|ENSMUSG00000031229.17|ATRX, chromatin remodeler	ENSMUST00000113573.8|Atrx|ENSMUSG00000031229.17|ATRX, chromatin remodeler
mm39_v1_chr18_-_36648850_36648866	0.0010142228037149097	UCACAGU	ENSMUST00000025363.7|Hbegf|ENSMUSG00000024486.7|heparin-binding EGF-like growth factor
mm39_v1_chr15_+_102862862_102862931	0.0010012123963919351	UCACAGU	ENSMUST00000001701.4|Hoxc11|ENSMUSG00000001656.4|homeobox C11
mm39_v1_chr2_-_102903680_102903858	0.0009281798055384538	UCACAGU	ENSMUST00000132449.8|Pdhx|ENSMUSG00000010914.11|pyruvate dehydrogenase complex, component X	ENSMUST00000111183.2|Pdhx|ENSMUSG00000010914.11|pyruvate dehydrogenase complex, component X	ENSMUST00000011058.9|Pdhx|ENSMUSG00000010914.11|pyruvate dehydrogenase complex, component X
mm39_v1_chr17_+_14499768_14499775	0.0008808802938856997	UCACAGU	ENSMUST00000024660.9|Smoc2|ENSMUSG00000023886.11|SPARC related modular calcium binding 2
mm39_v1_chr14_-_49763310_49763503	0.0007296695072780063	UCACAGU	ENSMUST00000146164.2|Slc35f4|ENSMUSG00000021852.15|solute carrier family 35, member F4	ENSMUST00000138884.8|Slc35f4|ENSMUSG00000021852.15|solute carrier family 35, member F4	ENSMUST00000074368.11|Slc35f4|ENSMUSG00000021852.15|solute carrier family 35, member F4	ENSMUST00000123534.2|Slc35f4|ENSMUSG00000021852.15|solute carrier family 35, member F4
mm39_v1_chr14_+_73475335_73475447	0.0007100223096885996	UCACAGU	ENSMUST00000044405.8|Lpar6|ENSMUSG00000033446.8|lysophosphatidic acid receptor 6
mm39_v1_chr16_+_6166982_6167008	0.0005729615902785203	UCACAGU	ENSMUST00000056416.9|Rbfox1|ENSMUSG00000008658.17|RNA binding protein, fox-1 homolog (C. elegans) 1
mm39_v1_chr15_+_54434576_54434596	0.0004336101431710772	UCACAGU	ENSMUST00000025356.4|Mal2|ENSMUSG00000024479.4|mal, T cell differentiation protein 2
mm39_v1_chr11_-_65160767_65160780	0.00028581805245585744	UCACAGU	ENSMUST00000102635.10|Myocd|ENSMUSG00000020542.19|myocardin
mm39_v1_chr10_+_11025150_11025174	0.0002827174500247011	UCACAGU	ENSMUST00000044053.13|Shprh|ENSMUSG00000090112.9|SNF2 histone linker PHD RING helicase
mm39_v1_chr12_+_109418759_109418775	1.2386770159608664e-05	UCACAGU	ENSMUST00000056110.15|Dlk1|ENSMUSG00000040856.18|delta like non-canonical Notch ligand 1
