mm39_v1_chr5_-_142892457_142892509	0.39019681983934074	UCCAGUU	ENSMUST00000167721.8|Actb|ENSMUSG00000029580.15|actin, beta	ENSMUST00000163829.2|Actb|ENSMUSG00000029580.15|actin, beta	ENSMUST00000100497.11|Actb|ENSMUSG00000029580.15|actin, beta
mm39_v1_chr2_-_5719302_5719349	0.37492324238772534	UCCAGUU	ENSMUST00000044009.14|Camk1d|ENSMUSG00000039145.17|calcium/calmodulin-dependent protein kinase ID
mm39_v1_chr17_-_71297885_71297931	0.33664253396213406	UCCAGUU	ENSMUST00000038446.10|Myl12b|ENSMUSG00000034868.10|myosin, light chain 12B, regulatory
mm39_v1_chr14_-_98406977_98407031	0.31742476562202926	UCCAGUU	ENSMUST00000071533.13|Dach1|ENSMUSG00000055639.17|dachshund family transcription factor 1	ENSMUST00000069334.8|Dach1|ENSMUSG00000055639.17|dachshund family transcription factor 1
mm39_v1_chr11_+_77107006_77107113	0.3149347827228846	UCCAGUU	ENSMUST00000156488.8|Ssh2|ENSMUSG00000037926.16|slingshot protein phosphatase 2	ENSMUST00000037912.12|Ssh2|ENSMUSG00000037926.16|slingshot protein phosphatase 2
mm39_v1_chr10_+_17598961_17598990	0.31375299080154545	UCCAGUU	ENSMUST00000038107.9|Cited2|ENSMUSG00000039910.11|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	ENSMUST00000219558.2|Cited2|ENSMUSG00000039910.11|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	ENSMUST00000218370.2|Cited2|ENSMUSG00000039910.11|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
mm39_v1_chr11_+_116324913_116324932	0.30196121410573024	UCCAGUU	ENSMUST00000057676.7|Ubald2|ENSMUSG00000050628.7|UBA-like domain containing 2
mm39_v1_chr4_-_55532453_55532485	0.27778405817283325	UCCAGUU	ENSMUST00000132746.2|Klf4|ENSMUSG00000003032.9|Kruppel-like factor 4 (gut)	ENSMUST00000107619.3|Klf4|ENSMUSG00000003032.9|Kruppel-like factor 4 (gut)
mm39_v1_chr1_-_69724939_69724987	0.272027895168186	UCCAGUU	ENSMUST00000027146.9|Ikzf2|ENSMUSG00000025997.14|IKAROS family zinc finger 2
mm39_v1_chr2_-_165997551_165997589	0.25479279025899715	UCCAGUU	ENSMUST00000109249.9|Sulf2|ENSMUSG00000006800.15|sulfatase 2	ENSMUST00000146497.9|Sulf2|ENSMUSG00000006800.15|sulfatase 2
mm39_v1_chr3_-_129763801_129763855	0.22825597823676028	UCCAGUU	ENSMUST00000029624.15|Mcub|ENSMUSG00000027994.15|mitochondrial calcium uniporter dominant negative beta subunit
mm39_v1_chr9_-_32452885_32452898	0.2263683822341668	UCCAGUU	ENSMUST00000016231.14|Fli1|ENSMUSG00000016087.14|Friend leukemia integration 1
mm39_v1_chr6_-_149003171_149003184	0.22552350997751378	UCCAGUU	ENSMUST00000111557.8|Dennd5b|ENSMUSG00000030313.16|DENN/MADD domain containing 5B
mm39_v1_chr8_-_18791557_18791583	0.20908621974058067	UCCAGUU	ENSMUST00000033846.7|Angpt2|ENSMUSG00000031465.7|angiopoietin 2
mm39_v1_chr6_-_146403410_146403532	0.20466991579466157	UCCAGUU	ENSMUST00000053273.15|Itpr2|ENSMUSG00000030287.16|inositol 1,4,5-triphosphate receptor 2
mm39_v1_chr1_+_178146689_178146703	0.19743982251648637	UCCAGUU	ENSMUST00000027781.7|Cox20|ENSMUSG00000026500.7|cytochrome c oxidase assembly protein 20
mm39_v1_chr4_-_35157405_35157504	0.19683027020548768	UCCAGUU	ENSMUST00000102975.10|Mob3b|ENSMUSG00000073910.11|MOB kinase activator 3B
mm39_v1_chr4_+_124880223_124880283	0.19266260833430313	UCCAGUU	ENSMUST00000030687.8|Rspo1|ENSMUSG00000028871.8|R-spondin 1
mm39_v1_chr8_+_120719177_120719265	0.17368957872867466	UCCAGUU	ENSMUST00000132583.8|Crispld2|ENSMUSG00000031825.17|cysteine-rich secretory protein LCCL domain containing 2	ENSMUST00000034282.16|Crispld2|ENSMUSG00000031825.17|cysteine-rich secretory protein LCCL domain containing 2
mm39_v1_chr4_-_108637979_108638000	0.15626377392647445	UCCAGUU	ENSMUST00000106657.8|Zfyve9|ENSMUSG00000034557.15|zinc finger, FYVE domain containing 9
mm39_v1_chr14_-_30075424_30075492	0.15500643230185485	UCCAGUU	ENSMUST00000224198.3|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit	ENSMUST00000238675.2|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit	ENSMUST00000112249.10|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit	ENSMUST00000224785.3|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm39_v1_chr11_-_98436626_98436645	0.15462972537811032	UCCAGUU	ENSMUST00000103141.4|Ikzf3|ENSMUSG00000018168.9|IKAROS family zinc finger 3
mm39_v1_chr13_-_41640757_41640774	0.1514496200735073	UCCAGUU	ENSMUST00000021794.14|Nedd9|ENSMUSG00000021365.16|neural precursor cell expressed, developmentally down-regulated gene 9
mm39_v1_chr16_+_17269845_17269903	0.1504709107305356	UCCAGUU	ENSMUST00000006293.5|Crkl|ENSMUSG00000006134.5|v-crk avian sarcoma virus CT10 oncogene homolog-like	ENSMUST00000231228.2|Crkl|ENSMUSG00000006134.5|v-crk avian sarcoma virus CT10 oncogene homolog-like
mm39_v1_chr2_-_153083322_153083346	0.14992710345266894	UCCAGUU	ENSMUST00000056924.14|Plagl2|ENSMUSG00000051413.18|pleiomorphic adenoma gene-like 2
mm39_v1_chr1_+_39940043_39940123	0.14678904420785835	UCCAGUU	ENSMUST00000168431.7|Map4k4|ENSMUSG00000026074.16|mitogen-activated protein kinase kinase kinase kinase 4	ENSMUST00000163854.9|Map4k4|ENSMUSG00000026074.16|mitogen-activated protein kinase kinase kinase kinase 4
mm39_v1_chr9_-_116004265_116004333	0.14639632922626855	UCCAGUU	ENSMUST00000061101.12|Tgfbr2|ENSMUSG00000032440.14|transforming growth factor, beta receptor II
mm39_v1_chr16_+_37688744_37688844	0.14214386192938722	UCCAGUU	ENSMUST00000078717.7|Lrrc58|ENSMUSG00000034158.10|leucine rich repeat containing 58
mm39_v1_chr1_+_172327569_172327614	0.13567819799011088	UCCAGUU	ENSMUST00000111230.8|Tagln2|ENSMUSG00000026547.16|transgelin 2
mm39_v1_chr11_-_69586884_69586929	0.13504407244511668	UCCAGUU	ENSMUST00000180587.8|Tnfsfm13|ENSMUSG00000018752.20|tumor necrosis factor (ligand) superfamily, membrane-bound member 13
mm39_v1_chr10_-_9550907_9550987	0.13225839393443042	UCCAGUU	ENSMUST00000100070.5|Samd5|ENSMUSG00000060487.8|sterile alpha motif domain containing 5
mm39_v1_chr4_-_53159885_53159900	0.13162043915433622	UCCAGUU	ENSMUST00000030010.4|Abca1|ENSMUSG00000015243.5|ATP-binding cassette, sub-family A (ABC1), member 1
mm39_v1_chr15_-_103163860_103163879	0.1300578556007225	UCCAGUU	ENSMUST00000075192.13|Nfe2|ENSMUSG00000058794.13|nuclear factor, erythroid derived 2
mm39_v1_chr6_-_52181393_52181567	0.12800933102258547	UCCAGUU	ENSMUST00000048794.7|Hoxa5|ENSMUSG00000038253.7|homeobox A5
mm39_v1_chr13_-_111945499_111945552	0.1207836953412839	UCCAGUU	ENSMUST00000109267.9|Map3k1|ENSMUSG00000021754.18|mitogen-activated protein kinase kinase kinase 1
mm39_v1_chr2_-_102016717_102016735	0.1197430700115329	UCCAGUU	ENSMUST00000058790.12|Ldlrad3|ENSMUSG00000048058.18|low density lipoprotein receptor class A domain containing 3
mm39_v1_chr8_-_116434517_116434533	0.11166426217667474	UCCAGUU	ENSMUST00000109104.2|Maf|ENSMUSG00000055435.7|avian musculoaponeurotic fibrosarcoma oncogene homolog
mm39_v1_chr14_-_55019387_55019411	0.11089774416503707	UCCAGUU	ENSMUST00000022787.8|Slc7a8|ENSMUSG00000022180.8|solute carrier family 7 (cationic amino acid transporter, y+ system), member 8
mm39_v1_chr13_-_93328719_93328835	0.1105836570782076	UCCAGUU	ENSMUST00000048702.7|Tent2|ENSMUSG00000042167.7|terminal nucleotidyltransferase 2
mm39_v1_chr5_+_99002293_99002325	0.1093070513131147	UCCAGUU	ENSMUST00000031278.6|Bmp3|ENSMUSG00000029335.6|bone morphogenetic protein 3	ENSMUST00000200388.2|Bmp3|ENSMUSG00000029335.6|bone morphogenetic protein 3
mm39_v1_chr8_-_64659004_64659045	0.10929661117204785	UCCAGUU	ENSMUST00000066166.6|Tll1|ENSMUSG00000053626.6|tolloid-like
mm39_v1_chr5_-_125256117_125256294	0.10620551777841133	UCCAGUU	ENSMUST00000086083.11|Ncor2|ENSMUSG00000029478.17|nuclear receptor co-repressor 2	ENSMUST00000111393.8|Ncor2|ENSMUSG00000029478.17|nuclear receptor co-repressor 2	ENSMUST00000111394.8|Ncor2|ENSMUSG00000029478.17|nuclear receptor co-repressor 2	ENSMUST00000111402.9|Ncor2|ENSMUSG00000029478.17|nuclear receptor co-repressor 2	ENSMUST00000111398.8|Ncor2|ENSMUSG00000029478.17|nuclear receptor co-repressor 2
mm39_v1_chr12_-_69728572_69728632	0.09990926588623629	UCCAGUU	ENSMUST00000183277.8|Sos2|ENSMUSG00000034801.14|SOS Ras/Rho guanine nucleotide exchange factor 2	ENSMUST00000035773.14|Sos2|ENSMUSG00000034801.14|SOS Ras/Rho guanine nucleotide exchange factor 2
mm39_v1_chr11_-_18968979_18968990	0.0916993201692625	UCCAGUU	ENSMUST00000144988.8|Meis1|ENSMUSG00000020160.19|Meis homeobox 1
mm39_v1_chr5_-_86320599_86320662	0.09162366590578655	UCCAGUU	ENSMUST00000039373.14|Uba6|ENSMUSG00000035898.14|ubiquitin-like modifier activating enzyme 6
mm39_v1_chr5_+_54155814_54155841	0.090622402231768	UCCAGUU	ENSMUST00000117661.9|Stim2|ENSMUSG00000039156.20|stromal interaction molecule 2
mm39_v1_chrX_-_47297436_47297568	0.08668678345747954	UCCAGUU	ENSMUST00000037960.11|Zdhhc9|ENSMUSG00000036985.13|zinc finger, DHHC domain containing 9
mm39_v1_chr3_-_133250129_133250174	0.08633247952605848	UCCAGUU	ENSMUST00000196398.5|Tet2|ENSMUSG00000040943.13|tet methylcytosine dioxygenase 2	ENSMUST00000098603.8|Tet2|ENSMUSG00000040943.13|tet methylcytosine dioxygenase 2
mm39_v1_chr11_+_115272732_115272759	0.08302777821977043	UCCAGUU	ENSMUST00000053288.6|Cdr2l|ENSMUSG00000050910.6|cerebellar degeneration-related protein 2-like
mm39_v1_chr6_+_72324281_72324362	0.08216496813068029	UCCAGUU	ENSMUST00000077783.5|0610030E20Rik|ENSMUSG00000058706.6|RIKEN cDNA 0610030E20 gene
mm39_v1_chr9_+_44953723_44953851	0.08091729009640906	UCCAGUU	ENSMUST00000034600.5|Mpzl2|ENSMUSG00000032092.6|myelin protein zero-like 2
mm39_v1_chr10_-_61288437_61288589	0.08090640001503016	UCCAGUU	ENSMUST00000167087.2|Eif4ebp2|ENSMUSG00000020091.16|eukaryotic translation initiation factor 4E binding protein 2	ENSMUST00000020288.15|Eif4ebp2|ENSMUSG00000020091.16|eukaryotic translation initiation factor 4E binding protein 2
mm39_v1_chr19_+_53128861_53128880	0.07961244159040785	UCCAGUU	ENSMUST00000111741.10|Add3|ENSMUSG00000025026.16|adducin 3 (gamma)
mm39_v1_chr9_-_108067552_108067617	0.07882493893205088	UCCAGUU	ENSMUST00000035208.14|Bsn|ENSMUSG00000032589.15|bassoon
mm39_v1_chr11_-_86248395_86248442	0.07879718428813626	UCCAGUU	ENSMUST00000043624.9|Med13|ENSMUSG00000034297.15|mediator complex subunit 13
mm39_v1_chr10_+_19810037_19810272	0.07793868055734496	UCCAGUU	ENSMUST00000095806.10|Map3k5|ENSMUSG00000071369.12|mitogen-activated protein kinase kinase kinase 5	ENSMUST00000120259.8|Map3k5|ENSMUSG00000071369.12|mitogen-activated protein kinase kinase kinase 5
mm39_v1_chr4_-_103072343_103072405	0.07638188947243513	UCCAGUU	ENSMUST00000150285.8|Slc35d1|ENSMUSG00000028521.18|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1
mm39_v1_chr5_+_102629240_102629257	0.07637721370050042	UCCAGUU	ENSMUST00000073302.12|Arhgap24|ENSMUSG00000057315.15|Rho GTPase activating protein 24	ENSMUST00000094559.9|Arhgap24|ENSMUSG00000057315.15|Rho GTPase activating protein 24
mm39_v1_chr18_+_39126178_39126240	0.07578852453879413	UCCAGUU	ENSMUST00000097593.9|Arhgap26|ENSMUSG00000036452.19|Rho GTPase activating protein 26
mm39_v1_chr5_-_131645437_131645450	0.07499538163899747	UCCAGUU	ENSMUST00000161804.9|Auts2|ENSMUSG00000029673.20|autism susceptibility candidate 2
mm39_v1_chr1_-_24139263_24139377	0.07320581130024714	UCCAGUU	ENSMUST00000187369.7|Fam135a|ENSMUSG00000026153.16|family with sequence similarity 135, member A	ENSMUST00000187752.7|Fam135a|ENSMUSG00000026153.16|family with sequence similarity 135, member A	ENSMUST00000186999.7|Fam135a|ENSMUSG00000026153.16|family with sequence similarity 135, member A
mm39_v1_chr1_-_60605867_60605938	0.07084528072961317	UCCAGUU	ENSMUST00000027168.12|Raph1|ENSMUSG00000026014.16|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	ENSMUST00000090293.11|Raph1|ENSMUSG00000026014.16|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	ENSMUST00000140485.8|Raph1|ENSMUSG00000026014.16|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
mm39_v1_chr16_+_14179421_14179475	0.0705976704610955	UCCAGUU	ENSMUST00000100167.10|Abcc1|ENSMUSG00000023088.18|ATP-binding cassette, sub-family C (CFTR/MRP), member 1	ENSMUST00000154748.8|Abcc1|ENSMUSG00000023088.18|ATP-binding cassette, sub-family C (CFTR/MRP), member 1	ENSMUST00000134776.8|Abcc1|ENSMUSG00000023088.18|ATP-binding cassette, sub-family C (CFTR/MRP), member 1
mm39_v1_chr9_+_44245981_44245998	0.06995341957446721	UCCAGUU	ENSMUST00000052686.4|H2ax|ENSMUSG00000049932.4|H2A.X variant histone
mm39_v1_chr12_+_21161722_21161778	0.06889572821473691	UCCAGUU	ENSMUST00000064595.15|Asap2|ENSMUSG00000052632.17|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	ENSMUST00000101562.11|Asap2|ENSMUSG00000052632.17|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	ENSMUST00000090834.13|Asap2|ENSMUSG00000052632.17|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
mm39_v1_chrX_-_107877909_107877987	0.06721330680298383	UCCAGUU	ENSMUST00000101283.4|Brwd3|ENSMUSG00000063663.12|bromodomain and WD repeat domain containing 3	ENSMUST00000150434.8|Brwd3|ENSMUSG00000063663.12|bromodomain and WD repeat domain containing 3
mm39_v1_chr6_+_54793894_54793905	0.06462176074173663	UCCAGUU	ENSMUST00000079869.13|Znrf2|ENSMUSG00000058446.15|zinc and ring finger 2
mm39_v1_chr19_-_10217968_10218125	0.06456858160624009	UCCAGUU	ENSMUST00000189897.2|Myrf|ENSMUSG00000036098.16|myelin regulatory factor	ENSMUST00000186056.7|Myrf|ENSMUSG00000036098.16|myelin regulatory factor	ENSMUST00000088013.12|Myrf|ENSMUSG00000036098.16|myelin regulatory factor
mm39_v1_chr15_+_95688712_95688755	0.06386973296674765	UCCAGUU	ENSMUST00000071874.8|Ano6|ENSMUSG00000064210.8|anoctamin 6
mm39_v1_chr13_-_3968157_3968220	0.06367695371750329	UCCAGUU	ENSMUST00000223258.2|Net1|ENSMUSG00000021215.16|neuroepithelial cell transforming gene 1	ENSMUST00000091853.12|Net1|ENSMUSG00000021215.16|neuroepithelial cell transforming gene 1
mm39_v1_chr3_+_89084770_89084850	0.06341294226952088	UCCAGUU	ENSMUST00000029684.15|Scamp3|ENSMUSG00000028049.16|secretory carrier membrane protein 3	ENSMUST00000120697.8|Scamp3|ENSMUSG00000028049.16|secretory carrier membrane protein 3	ENSMUST00000098941.5|Scamp3|ENSMUSG00000028049.16|secretory carrier membrane protein 3
mm39_v1_chr2_+_145627900_145628073	0.06306595518107769	UCCAGUU	ENSMUST00000110005.8|Rin2|ENSMUSG00000001768.17|Ras and Rab interactor 2	ENSMUST00000094480.11|Rin2|ENSMUSG00000001768.17|Ras and Rab interactor 2
mm39_v1_chrX_+_68403900_68403996	0.06298788273878052	UCCAGUU	ENSMUST00000033532.7|Aff2|ENSMUSG00000031189.13|AF4/FMR2 family, member 2
mm39_v1_chr15_-_28025920_28025970	0.06222826118139585	UCCAGUU	ENSMUST00000090247.7|Trio|ENSMUSG00000022263.11|triple functional domain (PTPRF interacting)
mm39_v1_chr3_-_27764571_27764616	0.060240382399596844	UCCAGUU	ENSMUST00000046157.10|Fndc3b|ENSMUSG00000039286.13|fibronectin type III domain containing 3B
mm39_v1_chr2_-_181101158_181101232	0.05986297669524305	UCCAGUU	ENSMUST00000155535.2|Zbtb46|ENSMUSG00000027583.14|zinc finger and BTB domain containing 46	ENSMUST00000029106.13|Zbtb46|ENSMUSG00000027583.14|zinc finger and BTB domain containing 46	ENSMUST00000087409.10|Zbtb46|ENSMUSG00000027583.14|zinc finger and BTB domain containing 46
mm39_v1_chr11_+_44508137_44508169	0.059530631886926144	UCCAGUU	ENSMUST00000109268.2|Ebf1|ENSMUSG00000057098.15|early B cell factor 1	ENSMUST00000101326.10|Ebf1|ENSMUSG00000057098.15|early B cell factor 1	ENSMUST00000081265.12|Ebf1|ENSMUSG00000057098.15|early B cell factor 1
mm39_v1_chr16_+_13176238_13176334	0.05938755407843981	UCCAGUU	ENSMUST00000149359.2|Mrtfb|ENSMUSG00000009569.15|myocardin related transcription factor B
mm39_v1_chr2_+_127205117_127205137	0.05835873362205496	UCCAGUU	ENSMUST00000104934.2|Adra2b|ENSMUSG00000058620.6|adrenergic receptor, alpha 2b
mm39_v1_chr8_-_81466126_81466126	0.05799668787367136	UCCAGUU	ENSMUST00000043359.9|Smarca5|ENSMUSG00000031715.15|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
mm39_v1_chr11_-_100628979_100629041	0.05653994516939139	UCCAGUU	ENSMUST00000155500.2|Rab5c|ENSMUSG00000019173.12|RAB5C, member RAS oncogene family	ENSMUST00000107364.8|Rab5c|ENSMUSG00000019173.12|RAB5C, member RAS oncogene family	ENSMUST00000019317.12|Rab5c|ENSMUSG00000019173.12|RAB5C, member RAS oncogene family
mm39_v1_chr7_-_34012956_34012993	0.055004393881889435	UCCAGUU	ENSMUST00000108074.8|Garre1|ENSMUSG00000066571.14|granule associated Rac and RHOG effector 1
mm39_v1_chr14_-_67106037_67106137	0.054626723787137545	UCCAGUU	ENSMUST00000022629.9|Dpysl2|ENSMUSG00000022048.9|dihydropyrimidinase-like 2
mm39_v1_chr5_-_143098726_143098749	0.05422972574081159	UCCAGUU	ENSMUST00000200607.5|Rnf216|ENSMUSG00000045078.13|ring finger protein 216	ENSMUST00000053498.13|Rnf216|ENSMUSG00000045078.13|ring finger protein 216
mm39_v1_chr9_-_108141105_108141161	0.05395207991494333	UCCAGUU	ENSMUST00000166905.8|Dag1|ENSMUSG00000039952.16|dystroglycan 1	ENSMUST00000191899.6|Dag1|ENSMUSG00000039952.16|dystroglycan 1
mm39_v1_chr6_+_30738043_30738058	0.05382568980822057	UCCAGUU	ENSMUST00000163949.9|Mest|ENSMUSG00000051855.16|mesoderm specific transcript	ENSMUST00000124665.3|Mest|ENSMUSG00000051855.16|mesoderm specific transcript
mm39_v1_chr14_-_14651778_14651816	0.053757607674998084	UCCAGUU	ENSMUST00000052678.9|Flnb|ENSMUSG00000025278.10|filamin, beta
mm39_v1_chr1_-_131455039_131455123	0.05341033878436637	UCCAGUU	ENSMUST00000097588.9|Srgap2|ENSMUSG00000026425.16|SLIT-ROBO Rho GTPase activating protein 2	ENSMUST00000186543.7|Srgap2|ENSMUSG00000026425.16|SLIT-ROBO Rho GTPase activating protein 2
mm39_v1_chr6_+_145156860_145156933	0.05235131373501371	UCCAGUU	ENSMUST00000111725.8|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111726.10|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000039729.5|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111723.8|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111724.8|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111721.2|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111719.2|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1
mm39_v1_chr4_+_149602673_149602735	0.05230291781963972	UCCAGUU	ENSMUST00000030839.13|Ctnnbip1|ENSMUSG00000028988.14|catenin beta interacting protein 1
mm39_v1_chr1_+_152642291_152642302	0.05206396857674145	UCCAGUU	ENSMUST00000077755.11|Arpc5|ENSMUSG00000008475.14|actin related protein 2/3 complex, subunit 5	ENSMUST00000097536.6|Arpc5|ENSMUSG00000008475.14|actin related protein 2/3 complex, subunit 5
mm39_v1_chr6_+_4903299_4903347	0.05148066175521079	UCCAGUU	ENSMUST00000035813.9|Ppp1r9a|ENSMUSG00000032827.16|protein phosphatase 1, regulatory subunit 9A
mm39_v1_chr8_-_37081091_37081102	0.051288666681964704	UCCAGUU	ENSMUST00000033923.14|Dlc1|ENSMUSG00000031523.17|deleted in liver cancer 1
mm39_v1_chr5_+_86952072_86952135	0.050023464719538134	UCCAGUU	ENSMUST00000119339.8|Ythdc1|ENSMUSG00000035851.15|YTH domain containing 1	ENSMUST00000120498.8|Ythdc1|ENSMUSG00000035851.15|YTH domain containing 1
mm39_v1_chr2_+_102488985_102489014	0.05001604150484583	UCCAGUU	ENSMUST00000080210.10|Slc1a2|ENSMUSG00000005089.16|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm39_v1_chr7_-_109351399_109351497	0.04958865140979106	UCCAGUU	ENSMUST00000128043.2|Tmem9b|ENSMUSG00000031021.14|TMEM9 domain family, member B	ENSMUST00000033333.13|Tmem9b|ENSMUSG00000031021.14|TMEM9 domain family, member B
mm39_v1_chr1_-_186438177_186438196	0.04734368844310049	UCCAGUU	ENSMUST00000045288.14|Tgfb2|ENSMUSG00000039239.15|transforming growth factor, beta 2
mm39_v1_chr9_+_74860335_74860374	0.04728563617416846	UCCAGUU	ENSMUST00000170846.8|Fam214a|ENSMUSG00000034858.17|family with sequence similarity 214, member A
mm39_v1_chr2_-_104324745_104324809	0.04722927779810111	UCCAGUU	ENSMUST00000028600.14|Hipk3|ENSMUSG00000027177.15|homeodomain interacting protein kinase 3
mm39_v1_chr18_+_65022035_65022105	0.04700902629789143	UCCAGUU	ENSMUST00000224385.3|Nedd4l|ENSMUSG00000024589.19|neural precursor cell expressed, developmentally down-regulated gene 4-like	ENSMUST00000163516.9|Nedd4l|ENSMUSG00000024589.19|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm39_v1_chr4_+_107291814_107291916	0.046814447952482685	UCCAGUU	ENSMUST00000135835.8|Glis1|ENSMUSG00000034762.10|GLIS family zinc finger 1	ENSMUST00000046005.9|Glis1|ENSMUSG00000034762.10|GLIS family zinc finger 1
mm39_v1_chr4_+_137589548_137589559	0.04648754282093076	UCCAGUU	ENSMUST00000102518.10|Ece1|ENSMUSG00000057530.15|endothelin converting enzyme 1
mm39_v1_chr16_+_44914397_44914416	0.0464454708951751	UCCAGUU	ENSMUST00000061050.6|Ccdc80|ENSMUSG00000022665.16|coiled-coil domain containing 80
mm39_v1_chr10_-_84276454_84276468	0.04633026487901169	UCCAGUU	ENSMUST00000020220.15|Nuak1|ENSMUSG00000020032.15|NUAK family, SNF1-like kinase, 1
mm39_v1_chr5_-_135963408_135963467	0.045951714406031616	UCCAGUU	ENSMUST00000198270.2|Ywhag|ENSMUSG00000051391.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	ENSMUST00000055808.6|Ywhag|ENSMUSG00000051391.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm39_v1_chr3_-_151543088_151543267	0.045290969233080916	UCCAGUU	ENSMUST00000029670.7|Ptgfr|ENSMUSG00000028036.7|prostaglandin F receptor
mm39_v1_chr1_+_176642226_176642226	0.045167760607022725	UCCAGUU	ENSMUST00000056773.15|Sdccag8|ENSMUSG00000026504.18|serologically defined colon cancer antigen 8	ENSMUST00000027785.15|Sdccag8|ENSMUSG00000026504.18|serologically defined colon cancer antigen 8
mm39_v1_chr2_-_72810782_72810811	0.04510934099874703	UCCAGUU	ENSMUST00000102689.10|Sp3|ENSMUSG00000027109.17|trans-acting transcription factor 3
mm39_v1_chr19_+_8797330_8797398	0.04509203565403697	UCCAGUU	ENSMUST00000096753.5|Hnrnpul2|ENSMUSG00000071659.5|heterogeneous nuclear ribonucleoprotein U-like 2
mm39_v1_chr9_-_75466885_75466946	0.042923417172116896	UCCAGUU	ENSMUST00000072232.9|Tmod3|ENSMUSG00000058587.10|tropomodulin 3
mm39_v1_chr8_+_72889073_72889108	0.04275715904935058	UCCAGUU	ENSMUST00000003575.11|Tpm4|ENSMUSG00000031799.11|tropomyosin 4
mm39_v1_chr14_+_32321341_32321498	0.042075745890624974	UCCAGUU	ENSMUST00000187377.7|Prrxl1|ENSMUSG00000041730.15|paired related homeobox protein-like 1	ENSMUST00000189022.8|Prrxl1|ENSMUSG00000041730.15|paired related homeobox protein-like 1	ENSMUST00000186452.7|Prrxl1|ENSMUSG00000041730.15|paired related homeobox protein-like 1
mm39_v1_chr16_+_42727926_42728047	0.041891765705653686	UCCAGUU	ENSMUST00000151244.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20	ENSMUST00000114694.9|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr9_-_63665216_63665276	0.04147196931437922	UCCAGUU	ENSMUST00000034973.10|Smad3|ENSMUSG00000032402.13|SMAD family member 3
mm39_v1_chr1_-_78173744_78173771	0.04123358252896458	UCCAGUU	ENSMUST00000087086.7|Pax3|ENSMUSG00000004872.16|paired box 3
mm39_v1_chr7_+_67602565_67602576	0.0408911616471089	UCCAGUU	ENSMUST00000005671.10|Igf1r|ENSMUSG00000005533.11|insulin-like growth factor I receptor
mm39_v1_chr3_+_52175757_52175827	0.04073304098804329	UCCAGUU	ENSMUST00000053764.7|Foxo1|ENSMUSG00000044167.7|forkhead box O1
mm39_v1_chr2_+_48704121_48704187	0.04046259097025529	UCCAGUU	ENSMUST00000063886.4|Acvr2a|ENSMUSG00000052155.6|activin receptor IIA
mm39_v1_chr18_-_16942289_16942384	0.040462550881507166	UCCAGUU	ENSMUST00000025166.14|Cdh2|ENSMUSG00000024304.15|cadherin 2
mm39_v1_chr3_+_9315662_9315662	0.04025700323611257	UCCAGUU	ENSMUST00000155203.2|Zbtb10|ENSMUSG00000069114.9|zinc finger and BTB domain containing 10
mm39_v1_chr13_+_47276132_47276191	0.039747126139446254	UCCAGUU	ENSMUST00000068891.12|Rnf144b|ENSMUSG00000038068.16|ring finger protein 144B
mm39_v1_chr9_-_62444318_62444343	0.03935582974134138	UCCAGUU	ENSMUST00000048043.12|Coro2b|ENSMUSG00000041729.16|coronin, actin binding protein, 2B
mm39_v1_chr15_-_81284244_81284294	0.039172143739265926	UCCAGUU	ENSMUST00000172107.8|St13|ENSMUSG00000022403.16|suppression of tumorigenicity 13	ENSMUST00000169204.2|St13|ENSMUSG00000022403.16|suppression of tumorigenicity 13	ENSMUST00000163382.2|St13|ENSMUSG00000022403.16|suppression of tumorigenicity 13
mm39_v1_chr18_+_82928959_82929005	0.03886661263005471	UCCAGUU	ENSMUST00000171238.8|Zfp516|ENSMUSG00000058881.14|zinc finger protein 516
mm39_v1_chr11_+_45946800_45946895	0.038384129895198155	UCCAGUU	ENSMUST00000011400.8|Adam19|ENSMUSG00000011256.17|a disintegrin and metallopeptidase domain 19 (meltrin beta)
mm39_v1_chr9_+_57496725_57496766	0.03593073588751545	UCCAGUU	ENSMUST00000053230.7|Ulk3|ENSMUSG00000032308.10|unc-51-like kinase 3
mm39_v1_chr7_+_140808680_140808726	0.035259366911363686	UCCAGUU	ENSMUST00000106027.9|Phrf1|ENSMUSG00000038611.18|PHD and ring finger domains 1
mm39_v1_chr13_+_92747586_92747624	0.03449936742896388	UCCAGUU	ENSMUST00000049488.9|Serinc5|ENSMUSG00000021703.10|serine incorporator 5
mm39_v1_chr9_+_43655230_43655318	0.03430136478226917	UCCAGUU	ENSMUST00000034510.9|Nectin1|ENSMUSG00000032012.10|nectin cell adhesion molecule 1
mm39_v1_chr7_-_16348862_16348946	0.03401227498505992	UCCAGUU	ENSMUST00000171937.2|Arhgap35|ENSMUSG00000058230.13|Rho GTPase activating protein 35	ENSMUST00000075845.11|Arhgap35|ENSMUSG00000058230.13|Rho GTPase activating protein 35
mm39_v1_chr4_-_43562397_43562438	0.03383005702664878	UCCAGUU	ENSMUST00000030187.14|Tln1|ENSMUSG00000028465.17|talin 1
mm39_v1_chr19_-_17814984_17815006	0.03310364103745597	UCCAGUU	ENSMUST00000025618.16|Pcsk5|ENSMUSG00000024713.17|proprotein convertase subtilisin/kexin type 5	ENSMUST00000050715.10|Pcsk5|ENSMUSG00000024713.17|proprotein convertase subtilisin/kexin type 5
mm39_v1_chr12_-_21423551_21423594	0.033066971029016505	UCCAGUU	ENSMUST00000101551.10|Adam17|ENSMUSG00000052593.17|a disintegrin and metallopeptidase domain 17
mm39_v1_chr1_+_36107452_36107481	0.032904827227561766	UCCAGUU	ENSMUST00000088174.4|Hs6st1|ENSMUSG00000045216.8|heparan sulfate 6-O-sulfotransferase 1
mm39_v1_chr1_-_22845124_22845203	0.03210696115375303	UCCAGUU	ENSMUST00000115273.10|Rims1|ENSMUSG00000041670.20|regulating synaptic membrane exocytosis 1
mm39_v1_chr18_+_70701260_70701469	0.03192177837827632	UCCAGUU	ENSMUST00000074058.11|Mbd2|ENSMUSG00000024513.17|methyl-CpG binding domain protein 2	ENSMUST00000114946.4|Mbd2|ENSMUSG00000024513.17|methyl-CpG binding domain protein 2
mm39_v1_chr7_-_78228116_78228157	0.031359938579620245	UCCAGUU	ENSMUST00000206268.2|Ntrk3|ENSMUSG00000059146.13|neurotrophic tyrosine kinase, receptor, type 3	ENSMUST00000039431.14|Ntrk3|ENSMUSG00000059146.13|neurotrophic tyrosine kinase, receptor, type 3
mm39_v1_chr5_+_105563605_105563651	0.031035080851213113	UCCAGUU	ENSMUST00000112707.3|Lrrc8b|ENSMUSG00000070639.6|leucine rich repeat containing 8 family, member B
mm39_v1_chr14_-_71004019_71004088	0.03068946079666916	UCCAGUU	ENSMUST00000167242.8|Xpo7|ENSMUSG00000022100.15|exportin 7
mm39_v1_chr5_+_3978266_3978300	0.03035726317374862	UCCAGUU	ENSMUST00000044492.10|Akap9|ENSMUSG00000040407.19|A kinase (PRKA) anchor protein (yotiao) 9
mm39_v1_chr11_+_53458188_53458353	0.02985703175756243	UCCAGUU	ENSMUST00000057330.15|Kif3a|ENSMUSG00000018395.20|kinesin family member 3A	ENSMUST00000120613.9|Kif3a|ENSMUSG00000018395.20|kinesin family member 3A	ENSMUST00000173744.8|Kif3a|ENSMUSG00000018395.20|kinesin family member 3A	ENSMUST00000118353.9|Kif3a|ENSMUSG00000018395.20|kinesin family member 3A
mm39_v1_chr4_+_100633860_100633889	0.029661614976812897	UCCAGUU	ENSMUST00000030257.15|Cachd1|ENSMUSG00000028532.15|cache domain containing 1	ENSMUST00000097955.3|Cachd1|ENSMUSG00000028532.15|cache domain containing 1
mm39_v1_chr4_-_116024788_116024804	0.02955133528486206	UCCAGUU	ENSMUST00000030465.10|Tspan1|ENSMUSG00000028699.10|tetraspanin 1	ENSMUST00000143426.2|Tspan1|ENSMUSG00000028699.10|tetraspanin 1
mm39_v1_chr4_+_148888877_148888897	0.029525113125366972	UCCAGUU	ENSMUST00000094464.10|Casz1|ENSMUSG00000028977.18|castor zinc finger 1	ENSMUST00000122222.8|Casz1|ENSMUSG00000028977.18|castor zinc finger 1
mm39_v1_chr8_-_70892204_70892261	0.028749012175979707	UCCAGUU	ENSMUST00000076615.6|Crtc1|ENSMUSG00000003575.14|CREB regulated transcription coactivator 1
mm39_v1_chr5_+_115644727_115644915	0.028735819094601586	UCCAGUU	ENSMUST00000067268.15|Pxn|ENSMUSG00000029528.20|paxillin	ENSMUST00000086523.7|Pxn|ENSMUSG00000029528.20|paxillin	ENSMUST00000212819.3|Pxn|ENSMUSG00000029528.20|paxillin
mm39_v1_chr1_+_131838294_131838310	0.02812353556883232	UCCAGUU	ENSMUST00000062264.8|Nucks1|ENSMUSG00000026434.13|nuclear casein kinase and cyclin-dependent kinase substrate 1
mm39_v1_chr3_+_102965601_102965684	0.027873993410030093	UCCAGUU	ENSMUST00000029445.13|Nras|ENSMUSG00000027852.15|neuroblastoma ras oncogene	ENSMUST00000200069.5|Nras|ENSMUSG00000027852.15|neuroblastoma ras oncogene
mm39_v1_chr7_+_5083212_5083300	0.02746059522261569	UCCAGUU	ENSMUST00000098845.10|Epn1|ENSMUSG00000035203.17|epsin 1	ENSMUST00000146317.8|Epn1|ENSMUSG00000035203.17|epsin 1	ENSMUST00000153169.2|Epn1|ENSMUSG00000035203.17|epsin 1	ENSMUST00000045277.7|Epn1|ENSMUSG00000035203.17|epsin 1
mm39_v1_chr15_+_57558048_57558089	0.027145246377368905	UCCAGUU	ENSMUST00000096430.11|Zhx2|ENSMUSG00000071757.11|zinc fingers and homeoboxes 2
mm39_v1_chr16_-_46317318_46317349	0.02696139134822358	UCCAGUU	ENSMUST00000023335.13|Nectin3|ENSMUSG00000022656.16|nectin cell adhesion molecule 3	ENSMUST00000023334.15|Nectin3|ENSMUSG00000022656.16|nectin cell adhesion molecule 3
mm39_v1_chrX_-_103024847_103024893	0.026420088260344404	UCCAGUU	ENSMUST00000121153.8|Rlim|ENSMUSG00000056537.12|ring finger protein, LIM domain interacting	ENSMUST00000070705.6|Rlim|ENSMUSG00000056537.12|ring finger protein, LIM domain interacting
mm39_v1_chr4_+_138920210_138920271	0.02615220925305896	UCCAGUU	ENSMUST00000102508.10|Capzb|ENSMUSG00000028745.19|capping protein (actin filament) muscle Z-line, beta	ENSMUST00000131912.8|Capzb|ENSMUSG00000028745.19|capping protein (actin filament) muscle Z-line, beta	ENSMUST00000102507.10|Capzb|ENSMUSG00000028745.19|capping protein (actin filament) muscle Z-line, beta
mm39_v1_chr2_-_102231208_102231314	0.025998210135088105	UCCAGUU	ENSMUST00000102573.8|Trim44|ENSMUSG00000027189.17|tripartite motif-containing 44
mm39_v1_chr1_+_60219724_60219797	0.02596852984958211	UCCAGUU	ENSMUST00000160834.8|Nbeal1|ENSMUSG00000073664.12|neurobeachin like 1
mm39_v1_chr17_+_50816296_50816431	0.025654364090380122	UCCAGUU	ENSMUST00000043938.8|Plcl2|ENSMUSG00000038910.8|phospholipase C-like 2
mm39_v1_chr1_-_119349969_119350021	0.0255039434536453	UCCAGUU	ENSMUST00000038765.6|Inhbb|ENSMUSG00000037035.6|inhibin beta-B
mm39_v1_chr6_-_99643723_99643784	0.02526669317037036	UCCAGUU	ENSMUST00000032151.3|Eif4e3|ENSMUSG00000093661.2|eukaryotic translation initiation factor 4E member 3
mm39_v1_chr10_-_121883196_121883227	0.025232646760508855	UCCAGUU	ENSMUST00000020322.12|Srgap1|ENSMUSG00000020121.16|SLIT-ROBO Rho GTPase activating protein 1	ENSMUST00000081688.13|Srgap1|ENSMUSG00000020121.16|SLIT-ROBO Rho GTPase activating protein 1
mm39_v1_chr11_-_72302520_72302573	0.02441974906849649	UCCAGUU	ENSMUST00000108500.8|Smtnl2|ENSMUSG00000045667.15|smoothelin-like 2	ENSMUST00000050226.7|Smtnl2|ENSMUSG00000045667.15|smoothelin-like 2
mm39_v1_chr11_+_77576981_77577005	0.024200509694698707	UCCAGUU	ENSMUST00000100802.11|Nufip2|ENSMUSG00000037857.17|nuclear fragile X mental retardation protein interacting protein 2	ENSMUST00000181023.2|Nufip2|ENSMUSG00000037857.17|nuclear fragile X mental retardation protein interacting protein 2
mm39_v1_chr16_-_4950285_4950347	0.022787756264578973	UCCAGUU	ENSMUST00000035672.5|Ppl|ENSMUSG00000039457.5|periplakin
mm39_v1_chr5_+_139186386_139186440	0.022670689058768043	UCCAGUU	ENSMUST00000058716.14|Sun1|ENSMUSG00000036817.15|Sad1 and UNC84 domain containing 1	ENSMUST00000110883.9|Sun1|ENSMUSG00000036817.15|Sad1 and UNC84 domain containing 1	ENSMUST00000110884.9|Sun1|ENSMUSG00000036817.15|Sad1 and UNC84 domain containing 1	ENSMUST00000100517.10|Sun1|ENSMUSG00000036817.15|Sad1 and UNC84 domain containing 1	ENSMUST00000127045.8|Sun1|ENSMUSG00000036817.15|Sad1 and UNC84 domain containing 1	ENSMUST00000143562.8|Sun1|ENSMUSG00000036817.15|Sad1 and UNC84 domain containing 1	ENSMUST00000078690.13|Sun1|ENSMUSG00000036817.15|Sad1 and UNC84 domain containing 1	ENSMUST00000146715.8|Sun1|ENSMUSG00000036817.15|Sad1 and UNC84 domain containing 1
mm39_v1_chr9_-_50920236_50920380	0.02264840017121071	UCCAGUU	ENSMUST00000176824.8|Sik2|ENSMUSG00000037112.17|salt inducible kinase 2	ENSMUST00000176663.8|Sik2|ENSMUSG00000037112.17|salt inducible kinase 2	ENSMUST00000041375.11|Sik2|ENSMUSG00000037112.17|salt inducible kinase 2
mm39_v1_chr9_-_101128976_101129003	0.0225535229961634	UCCAGUU	ENSMUST00000075941.12|Ppp2r3a|ENSMUSG00000043154.16|protein phosphatase 2, regulatory subunit B'', alpha
mm39_v1_chr13_+_118851214_118851238	0.022194278446130644	UCCAGUU	ENSMUST00000022246.9|Fgf10|ENSMUSG00000021732.15|fibroblast growth factor 10
mm39_v1_chr11_-_106378622_106378648	0.02180280227762151	UCCAGUU	ENSMUST00000001059.9|Ern1|ENSMUSG00000020715.10|endoplasmic reticulum (ER) to nucleus signalling 1	ENSMUST00000106799.2|Ern1|ENSMUSG00000020715.10|endoplasmic reticulum (ER) to nucleus signalling 1	ENSMUST00000106800.2|Ern1|ENSMUSG00000020715.10|endoplasmic reticulum (ER) to nucleus signalling 1
mm39_v1_chr3_-_84212069_84212116	0.02134809791445326	UCCAGUU	ENSMUST00000107692.8|Trim2|ENSMUSG00000027993.17|tripartite motif-containing 2
mm39_v1_chr3_+_121746862_121746943	0.02072795887625702	UCCAGUU	ENSMUST00000037958.14|Arhgap29|ENSMUSG00000039831.17|Rho GTPase activating protein 29	ENSMUST00000196904.5|Arhgap29|ENSMUSG00000039831.17|Rho GTPase activating protein 29
mm39_v1_chr4_-_142939260_142939303	0.020661610897625637	UCCAGUU	ENSMUST00000105778.8|Prdm2|ENSMUSG00000057637.14|PR domain containing 2, with ZNF domain	ENSMUST00000134791.2|Prdm2|ENSMUSG00000057637.14|PR domain containing 2, with ZNF domain
mm39_v1_chr2_-_20973692_20973768	0.02056908530147382	UCCAGUU	ENSMUST00000114594.8|Arhgap21|ENSMUSG00000036591.17|Rho GTPase activating protein 21
mm39_v1_chr14_-_103336990_103337007	0.020538747503916162	UCCAGUU	ENSMUST00000022720.15|Fbxl3|ENSMUSG00000022124.16|F-box and leucine-rich repeat protein 3	ENSMUST00000144141.8|Fbxl3|ENSMUSG00000022124.16|F-box and leucine-rich repeat protein 3
mm39_v1_chr2_+_107120934_107121005	0.020321265120985928	UCCAGUU	ENSMUST00000037012.3|Kcna4|ENSMUSG00000042604.6|potassium voltage-gated channel, shaker-related subfamily, member 4
mm39_v1_chr7_-_110213968_110214135	0.020165991790402356	UCCAGUU	ENSMUST00000166020.8|Sbf2|ENSMUSG00000038371.16|SET binding factor 2	ENSMUST00000171218.8|Sbf2|ENSMUSG00000038371.16|SET binding factor 2	ENSMUST00000033058.14|Sbf2|ENSMUSG00000038371.16|SET binding factor 2	ENSMUST00000164759.8|Sbf2|ENSMUSG00000038371.16|SET binding factor 2
mm39_v1_chr12_-_54909568_54909706	0.020146962235293754	UCCAGUU	ENSMUST00000078124.8|Cfl2|ENSMUSG00000062929.9|cofilin 2, muscle
mm39_v1_chr10_-_126956991_126957019	0.02005408760964941	UCCAGUU	ENSMUST00000080975.6|Os9|ENSMUSG00000040462.14|amplified in osteosarcoma	ENSMUST00000164259.9|Os9|ENSMUSG00000040462.14|amplified in osteosarcoma
mm39_v1_chr10_-_128532126_128532142	0.01983406070402587	UCCAGUU	ENSMUST00000000727.4|Rab5b|ENSMUSG00000000711.4|RAB5B, member RAS oncogene family
mm39_v1_chr6_-_39183712_39183769	0.019367966363054566	UCCAGUU	ENSMUST00000002305.9|Kdm7a|ENSMUSG00000042599.9|lysine (K)-specific demethylase 7A
mm39_v1_chr15_-_55770312_55770353	0.019339941989735876	UCCAGUU	ENSMUST00000039769.13|Sntb1|ENSMUSG00000060429.13|syntrophin, basic 1
mm39_v1_chr2_-_155356716_155356775	0.018377438113755938	UCCAGUU	ENSMUST00000029131.11|Ggt7|ENSMUSG00000027603.16|gamma-glutamyltransferase 7
mm39_v1_chrX_-_102865546_102865598	0.016601809033117795	UCCAGUU	ENSMUST00000042664.10|Slc16a2|ENSMUSG00000033965.11|solute carrier family 16 (monocarboxylic acid transporters), member 2
mm39_v1_chr11_-_5211558_5211590	0.01657492834525001	UCCAGUU	ENSMUST00000020662.15|Kremen1|ENSMUSG00000020393.17|kringle containing transmembrane protein 1
mm39_v1_chr8_-_73246435_73246507	0.016531335166244058	UCCAGUU	ENSMUST00000152080.8|Slc35e1|ENSMUSG00000019731.14|solute carrier family 35, member E1
mm39_v1_chr19_-_44058175_44058226	0.01633089804093753	UCCAGUU	ENSMUST00000172041.8|Erlin1|ENSMUSG00000025198.17|ER lipid raft associated 1	ENSMUST00000071698.13|Erlin1|ENSMUSG00000025198.17|ER lipid raft associated 1	ENSMUST00000112028.10|Erlin1|ENSMUSG00000025198.17|ER lipid raft associated 1
mm39_v1_chr19_+_6391148_6391261	0.016213224420246763	UCCAGUU	ENSMUST00000025897.13|Map4k2|ENSMUSG00000024948.16|mitogen-activated protein kinase kinase kinase kinase 2	ENSMUST00000130382.8|Map4k2|ENSMUSG00000024948.16|mitogen-activated protein kinase kinase kinase kinase 2
mm39_v1_chr5_+_20112500_20112549	0.015830385651833534	UCCAGUU	ENSMUST00000101558.10|Magi2|ENSMUSG00000040003.19|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm39_v1_chr4_+_129714494_129714503	0.015816302052147162	UCCAGUU	ENSMUST00000165853.2|Ptp4a2|ENSMUSG00000028788.15|protein tyrosine phosphatase 4a2
mm39_v1_chr10_+_12966532_12966587	0.015466162765537738	UCCAGUU	ENSMUST00000121646.8|Plagl1|ENSMUSG00000019817.19|pleiomorphic adenoma gene-like 1	ENSMUST00000121325.8|Plagl1|ENSMUSG00000019817.19|pleiomorphic adenoma gene-like 1	ENSMUST00000121766.8|Plagl1|ENSMUSG00000019817.19|pleiomorphic adenoma gene-like 1
mm39_v1_chr2_-_181234526_181234596	0.01539936290101076	UCCAGUU	ENSMUST00000108789.9|Zfp512b|ENSMUSG00000000823.17|zinc finger protein 512B	ENSMUST00000153998.2|Zfp512b|ENSMUSG00000000823.17|zinc finger protein 512B
mm39_v1_chr5_-_102217770_102217807	0.015273288258855896	UCCAGUU	ENSMUST00000053177.14|Wdfy3|ENSMUSG00000043940.16|WD repeat and FYVE domain containing 3	ENSMUST00000174698.2|Wdfy3|ENSMUSG00000043940.16|WD repeat and FYVE domain containing 3
mm39_v1_chr8_-_80126120_80126168	0.015147600673042114	UCCAGUU	ENSMUST00000066091.14|Smad1|ENSMUSG00000031681.17|SMAD family member 1	ENSMUST00000109885.8|Smad1|ENSMUSG00000031681.17|SMAD family member 1
mm39_v1_chr4_-_108690805_108690827	0.014280741788988962	UCCAGUU	ENSMUST00000102742.11|Btf3l4|ENSMUSG00000028568.17|basic transcription factor 3-like 4
mm39_v1_chr5_-_125418107_125418176	0.014088587583892533	UCCAGUU	ENSMUST00000111390.8|Scarb1|ENSMUSG00000037936.16|scavenger receptor class B, member 1	ENSMUST00000086075.13|Scarb1|ENSMUSG00000037936.16|scavenger receptor class B, member 1
mm39_v1_chr6_-_115971914_115971971	0.014054566632910855	UCCAGUU	ENSMUST00000015511.15|Plxnd1|ENSMUSG00000030123.16|plexin D1
mm39_v1_chr17_-_45997132_45997194	0.013910270613942597	UCCAGUU	ENSMUST00000113523.9|Tmem63b|ENSMUSG00000036026.16|transmembrane protein 63b
mm39_v1_chr13_+_117738972_117739018	0.013841478176857516	UCCAGUU	ENSMUST00000006991.9|Hcn1|ENSMUSG00000021730.9|hyperpolarization activated cyclic nucleotide gated potassium channel 1
mm39_v1_chr12_+_69418886_69418946	0.013358769608845859	UCCAGUU	ENSMUST00000050063.9|Arf6|ENSMUSG00000044147.9|ADP-ribosylation factor 6
mm39_v1_chr10_-_13350106_13350185	0.013253171777047835	UCCAGUU	ENSMUST00000105545.12|Phactr2|ENSMUSG00000062866.17|phosphatase and actin regulator 2
mm39_v1_chr16_-_85698679_85698716	0.013176968754960649	UCCAGUU	ENSMUST00000023611.7|Adamts5|ENSMUSG00000022894.7|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
mm39_v1_chr6_-_31540913_31540924	0.012954201245187848	UCCAGUU	ENSMUST00000026698.8|Podxl|ENSMUSG00000025608.10|podocalyxin-like
mm39_v1_chr5_-_137145030_137145073	0.012796146388015496	UCCAGUU	ENSMUST00000054384.6|Trim56|ENSMUSG00000043279.10|tripartite motif-containing 56	ENSMUST00000152207.2|Trim56|ENSMUSG00000043279.10|tripartite motif-containing 56
mm39_v1_chr3_+_126390600_126390688	0.012656075026092575	UCCAGUU	ENSMUST00000106402.8|Camk2d|ENSMUSG00000053819.17|calcium/calmodulin-dependent protein kinase II, delta	ENSMUST00000106399.8|Camk2d|ENSMUSG00000053819.17|calcium/calmodulin-dependent protein kinase II, delta	ENSMUST00000066466.13|Camk2d|ENSMUSG00000053819.17|calcium/calmodulin-dependent protein kinase II, delta	ENSMUST00000163226.8|Camk2d|ENSMUSG00000053819.17|calcium/calmodulin-dependent protein kinase II, delta	ENSMUST00000199300.5|Camk2d|ENSMUSG00000053819.17|calcium/calmodulin-dependent protein kinase II, delta
mm39_v1_chr2_+_14609063_14609117	0.012411772870538799	UCCAGUU	ENSMUST00000114723.9|Cacnb2|ENSMUSG00000057914.16|calcium channel, voltage-dependent, beta 2 subunit
mm39_v1_chr1_+_160733942_160734030	0.012178422026858593	UCCAGUU	ENSMUST00000161609.8|Rc3h1|ENSMUSG00000040423.12|RING CCCH (C3H) domains 1
mm39_v1_chr15_+_7840327_7840327	0.011923373299717849	UCCAGUU	ENSMUST00000022744.5|Gdnf|ENSMUSG00000022144.5|glial cell line derived neurotrophic factor
mm39_v1_chr11_-_94390788_94390828	0.011888317961555614	UCCAGUU	ENSMUST00000127305.2|Epn3|ENSMUSG00000010080.16|epsin 3
mm39_v1_chr2_-_119308094_119308186	0.011349243752970658	UCCAGUU	ENSMUST00000110808.2|Ino80|ENSMUSG00000034154.16|INO80 complex subunit	ENSMUST00000049920.14|Ino80|ENSMUSG00000034154.16|INO80 complex subunit
mm39_v1_chr12_-_79343040_79343086	0.011261015221828619	UCCAGUU	ENSMUST00000218377.2|Zfyve26|ENSMUSG00000066440.6|zinc finger, FYVE domain containing 26	ENSMUST00000021547.8|Zfyve26|ENSMUSG00000066440.6|zinc finger, FYVE domain containing 26
mm39_v1_chr2_+_14078896_14078954	0.011195104245750898	UCCAGUU	ENSMUST00000102960.11|Stam|ENSMUSG00000026718.18|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1
mm39_v1_chr12_+_37291632_37291653	0.01115549355082278	UCCAGUU	ENSMUST00000049874.14|Agmo|ENSMUSG00000050103.19|alkylglycerol monooxygenase
mm39_v1_chrX_+_18028814_18028897	0.010951620836405097	UCCAGUU	ENSMUST00000044484.13|Kdm6a|ENSMUSG00000037369.18|lysine (K)-specific demethylase 6A	ENSMUST00000052368.9|Kdm6a|ENSMUSG00000037369.18|lysine (K)-specific demethylase 6A
mm39_v1_chr4_-_48279543_48279614	0.010841007224799826	UCCAGUU	ENSMUST00000030028.5|Erp44|ENSMUSG00000028343.11|endoplasmic reticulum protein 44
mm39_v1_chr1_+_82564627_82564709	0.010628042310861873	UCCAGUU	ENSMUST00000113457.9|Col4a3|ENSMUSG00000079465.9|collagen, type IV, alpha 3
mm39_v1_chr4_+_106768662_106768708	0.010379815009547728	UCCAGUU	ENSMUST00000030367.15|Ssbp3|ENSMUSG00000061887.15|single-stranded DNA binding protein 3	ENSMUST00000149926.8|Ssbp3|ENSMUSG00000061887.15|single-stranded DNA binding protein 3
mm39_v1_chr14_+_74878280_74878328	0.010366688639217551	UCCAGUU	ENSMUST00000036653.5|Htr2a|ENSMUSG00000034997.6|5-hydroxytryptamine (serotonin) receptor 2A
mm39_v1_chr11_+_102556397_102556429	0.010361074661052173	UCCAGUU	ENSMUST00000100378.4|Meioc|ENSMUSG00000051455.14|meiosis specific with coiled-coil domain
mm39_v1_chr14_-_120279841_120279893	0.01016235575148882	UCCAGUU	ENSMUST00000058213.6|Oxgr1|ENSMUSG00000044819.6|oxoglutarate (alpha-ketoglutarate) receptor 1
mm39_v1_chr12_-_119202527_119202599	0.010023936651725867	UCCAGUU	ENSMUST00000026360.9|Itgb8|ENSMUSG00000025321.15|integrin beta 8
mm39_v1_chr4_+_21931290_21931367	0.00993240395479277	UCCAGUU	ENSMUST00000029908.8|Faxc|ENSMUSG00000028246.14|failed axon connections homolog
mm39_v1_chr17_-_68311073_68311135	0.009445568255256415	UCCAGUU	ENSMUST00000024840.12|Arhgap28|ENSMUSG00000024043.14|Rho GTPase activating protein 28
mm39_v1_chr7_+_4140031_4140070	0.009314200393070349	UCCAGUU	ENSMUST00000128756.8|Leng8|ENSMUSG00000035545.14|leukocyte receptor cluster (LRC) member 8	ENSMUST00000132086.8|Leng8|ENSMUSG00000035545.14|leukocyte receptor cluster (LRC) member 8	ENSMUST00000037472.13|Leng8|ENSMUSG00000035545.14|leukocyte receptor cluster (LRC) member 8	ENSMUST00000117274.8|Leng8|ENSMUSG00000035545.14|leukocyte receptor cluster (LRC) member 8	ENSMUST00000121270.8|Leng8|ENSMUSG00000035545.14|leukocyte receptor cluster (LRC) member 8	ENSMUST00000144248.3|Leng8|ENSMUSG00000035545.14|leukocyte receptor cluster (LRC) member 8
mm39_v1_chr18_-_47501897_47501945	0.00918587596769168	UCCAGUU	ENSMUST00000019791.14|Sema6a|ENSMUSG00000019647.17|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	ENSMUST00000115449.9|Sema6a|ENSMUSG00000019647.17|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm39_v1_chr5_+_89034666_89034684	0.009144299848891278	UCCAGUU	ENSMUST00000148750.8|Slc4a4|ENSMUSG00000060961.17|solute carrier family 4 (anion exchanger), member 4
mm39_v1_chr11_+_116734104_116734104	0.008905895825553338	UCCAGUU	ENSMUST00000106370.10|Mettl23|ENSMUSG00000090266.11|methyltransferase like 23
mm39_v1_chr17_+_70276068_70276083	0.008485802512598605	UCCAGUU	ENSMUST00000133983.8|Dlgap1|ENSMUSG00000003279.18|DLG associated protein 1
mm39_v1_chr4_+_155575792_155575877	0.008112225198648577	UCCAGUU	ENSMUST00000165335.8|Gnb1|ENSMUSG00000029064.16|guanine nucleotide binding protein (G protein), beta 1	ENSMUST00000105616.10|Gnb1|ENSMUSG00000029064.16|guanine nucleotide binding protein (G protein), beta 1	ENSMUST00000030940.14|Gnb1|ENSMUSG00000029064.16|guanine nucleotide binding protein (G protein), beta 1
mm39_v1_chr13_+_9143995_9144018	0.008107271058848443	UCCAGUU	ENSMUST00000091829.4|Larp4b|ENSMUSG00000033499.15|La ribonucleoprotein domain family, member 4B
mm39_v1_chrX_+_9066105_9066147	0.007986010579221343	UCCAGUU	ENSMUST00000069763.3|Lancl3|ENSMUSG00000047344.10|LanC lantibiotic synthetase component C-like 3 (bacterial)
mm39_v1_chr18_+_64473091_64473114	0.007853848505832772	UCCAGUU	ENSMUST00000175965.10|Onecut2|ENSMUSG00000045991.20|one cut domain, family member 2
mm39_v1_chr1_+_194302123_194302141	0.007779402649421831	UCCAGUU	ENSMUST00000027952.12|Plxna2|ENSMUSG00000026640.13|plexin A2
mm39_v1_chr2_+_112209548_112209598	0.007589790986362253	UCCAGUU	ENSMUST00000028552.4|Katnbl1|ENSMUSG00000027132.4|katanin p80 subunit B like 1
mm39_v1_chr6_+_105654729_105654756	0.007460942956096168	UCCAGUU	ENSMUST00000089208.9|Cntn4|ENSMUSG00000064293.15|contactin 4
mm39_v1_chr10_-_63039709_63039735	0.0069379153433563245	UCCAGUU	ENSMUST00000095580.3|Mypn|ENSMUSG00000020067.9|myopalladin
mm39_v1_chr14_+_63075127_63075203	0.0068093787295130815	UCCAGUU	ENSMUST00000014691.10|Wdfy2|ENSMUSG00000014547.11|WD repeat and FYVE domain containing 2
mm39_v1_chr7_-_136916123_136916174	0.0067430109536092	UCCAGUU	ENSMUST00000106118.10|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000168203.2|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000169486.9|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000033378.13|Ebf3|ENSMUSG00000010476.15|early B cell factor 3
mm39_v1_chr1_+_63312420_63312434	0.006612854790825187	UCCAGUU	ENSMUST00000239483.2|Zdbf2|ENSMUSG00000027520.17|zinc finger, DBF-type containing 2	ENSMUST00000114132.8|Zdbf2|ENSMUSG00000027520.17|zinc finger, DBF-type containing 2	ENSMUST00000126932.2|Zdbf2|ENSMUSG00000027520.17|zinc finger, DBF-type containing 2
mm39_v1_chr10_+_22520910_22521008	0.006573945358757994	UCCAGUU	ENSMUST00000042261.5|Slc2a12|ENSMUSG00000037490.6|solute carrier family 2 (facilitated glucose transporter), member 12
mm39_v1_chr11_-_120239339_120239385	0.006378557053913356	UCCAGUU	ENSMUST00000071555.13|Actg1|ENSMUSG00000062825.16|actin, gamma, cytoplasmic 1
mm39_v1_chr10_-_14420725_14420780	0.006076113175670284	UCCAGUU	ENSMUST00000041168.6|Adgrg6|ENSMUSG00000039116.8|adhesion G protein-coupled receptor G6	ENSMUST00000238680.2|Adgrg6|ENSMUSG00000039116.8|adhesion G protein-coupled receptor G6
mm39_v1_chr15_+_9140685_9140752	0.005903241731723014	UCCAGUU	ENSMUST00000090380.6|Lmbrd2|ENSMUSG00000039704.9|LMBR1 domain containing 2
mm39_v1_chr15_-_98985698_98985698	0.005665694224760276	UCCAGUU	ENSMUST00000064462.5|C1ql4|ENSMUSG00000001076.8|complement component 1, q subcomponent-like 4
mm39_v1_chr3_+_89427458_89427481	0.005603321212622541	UCCAGUU	ENSMUST00000000811.8|Kcnn3|ENSMUSG00000000794.10|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
mm39_v1_chr12_+_79075924_79076002	0.005589948886446671	UCCAGUU	ENSMUST00000039928.7|Plekhh1|ENSMUSG00000060716.8|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1
mm39_v1_chr9_+_65536892_65536965	0.0054010143573991415	UCCAGUU	ENSMUST00000169003.8|Rbpms2|ENSMUSG00000032387.16|RNA binding protein with multiple splicing 2
mm39_v1_chr15_-_54141816_54141880	0.004992593885176292	UCCAGUU	ENSMUST00000079772.4|Tnfrsf11b|ENSMUSG00000063727.4|tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)
mm39_v1_chr11_-_37126709_37126821	0.004838145228803975	UCCAGUU	ENSMUST00000102801.8|Tenm2|ENSMUSG00000049336.17|teneurin transmembrane protein 2
mm39_v1_chr14_-_65187287_65187335	0.004812997343168842	UCCAGUU	ENSMUST00000067843.10|Hmbox1|ENSMUSG00000021972.15|homeobox containing 1	ENSMUST00000176489.8|Hmbox1|ENSMUSG00000021972.15|homeobox containing 1	ENSMUST00000175905.8|Hmbox1|ENSMUSG00000021972.15|homeobox containing 1	ENSMUST00000022544.14|Hmbox1|ENSMUSG00000021972.15|homeobox containing 1	ENSMUST00000175744.8|Hmbox1|ENSMUSG00000021972.15|homeobox containing 1	ENSMUST00000176128.8|Hmbox1|ENSMUSG00000021972.15|homeobox containing 1
mm39_v1_chr5_+_35915217_35915288	0.004768146081857458	UCCAGUU	ENSMUST00000101280.10|Ablim2|ENSMUSG00000029095.18|actin-binding LIM protein 2	ENSMUST00000054598.12|Ablim2|ENSMUSG00000029095.18|actin-binding LIM protein 2	ENSMUST00000114205.8|Ablim2|ENSMUSG00000029095.18|actin-binding LIM protein 2	ENSMUST00000114206.9|Ablim2|ENSMUSG00000029095.18|actin-binding LIM protein 2
mm39_v1_chr14_-_124914516_124914539	0.004568985795189301	UCCAGUU	ENSMUST00000095529.10|Fgf14|ENSMUSG00000025551.14|fibroblast growth factor 14
mm39_v1_chr16_-_45664664_45664744	0.004447546446268193	UCCAGUU	ENSMUST00000036355.13|Phldb2|ENSMUSG00000033149.18|pleckstrin homology like domain, family B, member 2
mm39_v1_chr6_+_38410848_38410901	0.0043221839561403035	UCCAGUU	ENSMUST00000160583.8|Ubn2|ENSMUSG00000038538.18|ubinuclein 2
mm39_v1_chr2_-_57004933_57005050	0.004146426006355199	UCCAGUU	ENSMUST00000028166.9|Nr4a2|ENSMUSG00000026826.14|nuclear receptor subfamily 4, group A, member 2
mm39_v1_chr1_+_91729175_91729210	0.0036685085677270225	UCCAGUU	ENSMUST00000007949.4|Twist2|ENSMUSG00000007805.5|twist basic helix-loop-helix transcription factor 2	ENSMUST00000186075.2|Twist2|ENSMUSG00000007805.5|twist basic helix-loop-helix transcription factor 2
mm39_v1_chr17_+_8559230_8559282	0.0036210608101438814	UCCAGUU	ENSMUST00000069742.8|Prr18|ENSMUSG00000055945.9|proline rich 18
mm39_v1_chr11_+_60913386_60913397	0.003469487778087007	UCCAGUU	ENSMUST00000089184.11|Kcnj12|ENSMUSG00000042529.15|potassium inwardly-rectifying channel, subfamily J, member 12
mm39_v1_chr15_-_48655329_48655459	0.0034156457913889875	UCCAGUU	ENSMUST00000160658.8|Csmd3|ENSMUSG00000022311.16|CUB and Sushi multiple domains 3	ENSMUST00000100670.10|Csmd3|ENSMUSG00000022311.16|CUB and Sushi multiple domains 3	ENSMUST00000162830.8|Csmd3|ENSMUSG00000022311.16|CUB and Sushi multiple domains 3
mm39_v1_chr3_-_142587678_142587787	0.0034017046217383424	UCCAGUU	ENSMUST00000043812.15|Pkn2|ENSMUSG00000004591.17|protein kinase N2
mm39_v1_chr14_-_63781381_63781440	0.0033223521676835344	UCCAGUU	ENSMUST00000058679.7|Mtmr9|ENSMUSG00000035078.7|myotubularin related protein 9
mm39_v1_chr7_+_89053562_89053609	0.0032705223180596933	UCCAGUU	ENSMUST00000058755.5|Fzd4|ENSMUSG00000049791.5|frizzled class receptor 4
mm39_v1_chr3_-_89230190_89230272	0.003235683830183408	UCCAGUU	ENSMUST00000200436.2|Efna3|ENSMUSG00000028039.12|ephrin A3	ENSMUST00000029673.10|Efna3|ENSMUSG00000028039.12|ephrin A3
mm39_v1_chr11_-_88609048_88609136	0.003150830475840659	UCCAGUU	ENSMUST00000107909.8|Msi2|ENSMUSG00000069769.14|musashi RNA-binding protein 2
mm39_v1_chr18_-_10182007_10182092	0.0030297337728627262	UCCAGUU	ENSMUST00000067947.7|Rock1|ENSMUSG00000024290.10|Rho-associated coiled-coil containing protein kinase 1
mm39_v1_chr15_-_60793115_60793137	0.002965426836251809	UCCAGUU	ENSMUST00000096418.5|A1bg|ENSMUSG00000022347.9|alpha-1-B glycoprotein
mm39_v1_chr6_+_83214357_83214543	0.0029177629923210196	UCCAGUU	ENSMUST00000039212.8|Slc4a5|ENSMUSG00000068323.13|solute carrier family 4, sodium bicarbonate cotransporter, member 5	ENSMUST00000113899.8|Slc4a5|ENSMUSG00000068323.13|solute carrier family 4, sodium bicarbonate cotransporter, member 5
mm39_v1_chr12_-_27392356_27392573	0.0028559378782975547	UCCAGUU	ENSMUST00000079063.7|Sox11|ENSMUSG00000063632.7|SRY (sex determining region Y)-box 11
mm39_v1_chrX_+_37405054_37405071	0.002805885371639884	UCCAGUU	ENSMUST00000016471.9|Atp1b4|ENSMUSG00000016327.10|ATPase, (Na+)/K+ transporting, beta 4 polypeptide	ENSMUST00000115134.2|Atp1b4|ENSMUSG00000016327.10|ATPase, (Na+)/K+ transporting, beta 4 polypeptide
mm39_v1_chr10_-_107555840_107555912	0.0026636312228746645	UCCAGUU	ENSMUST00000050702.9|Ptprq|ENSMUSG00000035916.9|protein tyrosine phosphatase, receptor type, Q
mm39_v1_chr8_-_125624424_125624496	0.002627729873021373	UCCAGUU	ENSMUST00000098312.4|Exoc8|ENSMUSG00000074030.4|exocyst complex component 8
mm39_v1_chr2_-_79287095_79287102	0.002545331886628816	UCCAGUU	ENSMUST00000041099.5|Neurod1|ENSMUSG00000034701.10|neurogenic differentiation 1
mm39_v1_chr5_+_32768515_32768589	0.002475501976784328	UCCAGUU	ENSMUST00000202543.4|Yes1|ENSMUSG00000014932.16|YES proto-oncogene 1, Src family tyrosine kinase	ENSMUST00000072311.13|Yes1|ENSMUSG00000014932.16|YES proto-oncogene 1, Src family tyrosine kinase
mm39_v1_chr8_-_88531018_88531067	0.00245519127396512	UCCAGUU	ENSMUST00000165770.9|Zfp423|ENSMUSG00000045333.16|zinc finger protein 423
mm39_v1_chr2_-_104647041_104647138	0.0019513271518649437	UCCAGUU	ENSMUST00000117237.2|Qser1|ENSMUSG00000074994.7|glutamine and serine rich 1	ENSMUST00000231375.2|Qser1|ENSMUSG00000074994.7|glutamine and serine rich 1
mm39_v1_chr17_-_48144094_48144180	0.0018806417859377495	UCCAGUU	ENSMUST00000131971.2|Mdfi|ENSMUSG00000032717.15|MyoD family inhibitor	ENSMUST00000129360.2|Mdfi|ENSMUSG00000032717.15|MyoD family inhibitor	ENSMUST00000113280.8|Mdfi|ENSMUSG00000032717.15|MyoD family inhibitor	ENSMUST00000132125.8|Mdfi|ENSMUSG00000032717.15|MyoD family inhibitor
mm39_v1_chr5_+_13449276_13449350	0.001879341586564448	UCCAGUU	ENSMUST00000030714.9|Sema3a|ENSMUSG00000028883.20|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	ENSMUST00000141968.2|Sema3a|ENSMUSG00000028883.20|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm39_v1_chr3_-_110050312_110050326	0.001869502894564051	UCCAGUU	ENSMUST00000156177.9|Ntng1|ENSMUSG00000059857.16|netrin G1
mm39_v1_chr5_-_137101108_137101131	0.0017065186064464497	UCCAGUU	ENSMUST00000077523.4|Serpine1|ENSMUSG00000037411.11|serine (or cysteine) peptidase inhibitor, clade E, member 1	ENSMUST00000041388.11|Serpine1|ENSMUSG00000037411.11|serine (or cysteine) peptidase inhibitor, clade E, member 1
mm39_v1_chrX_-_166906307_166906330	0.0014229566186085222	UCCAGUU	ENSMUST00000112149.9|Frmpd4|ENSMUSG00000049176.17|FERM and PDZ domain containing 4
mm39_v1_chrX_-_132799144_132799178	0.0013958916451522318	UCCAGUU	ENSMUST00000087557.12|Tspan6|ENSMUSG00000067377.13|tetraspanin 6
mm39_v1_chr7_+_120276801_120276868	0.0013158088530429092	UCCAGUU	ENSMUST00000208454.2|Mosmo|ENSMUSG00000046096.8|modulator of smoothened	ENSMUST00000060175.8|Mosmo|ENSMUSG00000046096.8|modulator of smoothened
mm39_v1_chr7_-_81104423_81104512	0.0011115460282359365	UCCAGUU	ENSMUST00000178892.3|Cpeb1|ENSMUSG00000025586.18|cytoplasmic polyadenylation element binding protein 1	ENSMUST00000098331.10|Cpeb1|ENSMUSG00000025586.18|cytoplasmic polyadenylation element binding protein 1
mm39_v1_chr9_-_75591274_75591338	0.0009897718822853925	UCCAGUU	ENSMUST00000214244.2|Scg3|ENSMUSG00000032181.8|secretogranin III	ENSMUST00000213324.2|Scg3|ENSMUSG00000032181.8|secretogranin III	ENSMUST00000034699.8|Scg3|ENSMUSG00000032181.8|secretogranin III
mm39_v1_chr13_+_42862957_42863057	0.0009641231739991274	UCCAGUU	ENSMUST00000066928.12|Phactr1|ENSMUSG00000054728.18|phosphatase and actin regulator 1	ENSMUST00000148891.8|Phactr1|ENSMUSG00000054728.18|phosphatase and actin regulator 1
mm39_v1_chr14_-_48902555_48902572	0.0008464186569657345	UCCAGUU	ENSMUST00000118578.9|Otx2|ENSMUSG00000021848.17|orthodenticle homeobox 2
mm39_v1_chr16_-_58343789_58343883	0.0006797136156180099	UCCAGUU	ENSMUST00000137035.8|St3gal6|ENSMUSG00000022747.18|ST3 beta-galactoside alpha-2,3-sialyltransferase 6	ENSMUST00000149456.8|St3gal6|ENSMUSG00000022747.18|ST3 beta-galactoside alpha-2,3-sialyltransferase 6
mm39_v1_chr19_+_38825005_38825056	0.0005618360635645306	UCCAGUU	ENSMUST00000037302.6|Tbc1d12|ENSMUSG00000048720.9|TBC1D12: TBC1 domain family, member 12
mm39_v1_chr14_+_69266566_69266687	0.00046974051109977477	UCCAGUU	ENSMUST00000014957.10|Stc1|ENSMUSG00000014813.10|stanniocalcin 1
mm39_v1_chr2_-_65397809_65397839	0.00046041771255795466	UCCAGUU	ENSMUST00000066432.12|Scn3a|ENSMUSG00000057182.16|sodium channel, voltage-gated, type III, alpha
