mm39_v1_chr16_-_4031814_4031861	1.6124933127375474	UGCAUAG	ENSMUST00000023165.9|Crebbp|ENSMUSG00000022521.11|CREB binding protein
mm39_v1_chr11_+_98754434_98754472	1.175172944877348	UGCAUAG	ENSMUST00000142414.8|Wipf2|ENSMUSG00000038013.15|WAS/WASL interacting protein family, member 2	ENSMUST00000037480.9|Wipf2|ENSMUSG00000038013.15|WAS/WASL interacting protein family, member 2
mm39_v1_chr7_-_127423641_127423751	1.116411947671195	UGCAUAG	ENSMUST00000106267.5|Stx1b|ENSMUSG00000030806.7|syntaxin 1B
mm39_v1_chr2_-_5719302_5719349	0.9852715966124782	UGCAUAG	ENSMUST00000044009.14|Camk1d|ENSMUSG00000039145.17|calcium/calmodulin-dependent protein kinase ID
mm39_v1_chr11_+_45946800_45946895	0.9839661721935418	UGCAUAG	ENSMUST00000011400.8|Adam19|ENSMUSG00000011256.17|a disintegrin and metallopeptidase domain 19 (meltrin beta)
mm39_v1_chr2_+_134627987_134628090	0.8562559131857843	UGCAUAG	ENSMUST00000131552.5|Plcb1|ENSMUSG00000051177.17|phospholipase C, beta 1	ENSMUST00000110116.8|Plcb1|ENSMUSG00000051177.17|phospholipase C, beta 1
mm39_v1_chr9_-_42855775_42855806	0.8560520183514896	UGCAUAG	ENSMUST00000114865.8|Grik4|ENSMUSG00000032017.15|glutamate receptor, ionotropic, kainate 4
mm39_v1_chr1_+_59802543_59802559	0.8424328666431756	UGCAUAG	ENSMUST00000087435.7|Bmpr2|ENSMUSG00000067336.7|bone morphogenetic protein receptor, type II (serine/threonine kinase)
mm39_v1_chr13_-_58261406_58261469	0.8252465271253402	UGCAUAG	ENSMUST00000160860.9|Klhl3|ENSMUSG00000014164.16|kelch-like 3
mm39_v1_chr8_+_40964818_40964829	0.784110139541137	UGCAUAG	ENSMUST00000098817.4|Vps37a|ENSMUSG00000031600.12|vacuolar protein sorting 37A
mm39_v1_chr10_+_17598961_17598990	0.7621012668045404	UGCAUAG	ENSMUST00000038107.9|Cited2|ENSMUSG00000039910.11|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	ENSMUST00000219558.2|Cited2|ENSMUSG00000039910.11|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	ENSMUST00000218370.2|Cited2|ENSMUSG00000039910.11|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
mm39_v1_chr1_-_165830160_165830182	0.7558371511523765	UGCAUAG	ENSMUST00000111429.11|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000176800.2|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000177358.8|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1
mm39_v1_chr6_-_39183712_39183769	0.7387937096621641	UGCAUAG	ENSMUST00000002305.9|Kdm7a|ENSMUSG00000042599.9|lysine (K)-specific demethylase 7A
mm39_v1_chr18_+_34354031_34354073	0.701248375615593	UGCAUAG	ENSMUST00000115781.10|Apc|ENSMUSG00000005871.16|APC, WNT signaling pathway regulator	ENSMUST00000079362.13|Apc|ENSMUSG00000005871.16|APC, WNT signaling pathway regulator
mm39_v1_chr4_-_108637979_108638000	0.6868744408796938	UGCAUAG	ENSMUST00000106657.8|Zfyve9|ENSMUSG00000034557.15|zinc finger, FYVE domain containing 9
mm39_v1_chr7_-_63588610_63588704	0.6688572350835201	UGCAUAG	ENSMUST00000063694.10|Klf13|ENSMUSG00000052040.11|Kruppel-like factor 13
mm39_v1_chr5_-_131645437_131645450	0.6374426729035466	UGCAUAG	ENSMUST00000161804.9|Auts2|ENSMUSG00000029673.20|autism susceptibility candidate 2
mm39_v1_chrX_+_158410229_158410294	0.6250301315634105	UGCAUAG	ENSMUST00000112456.9|Sh3kbp1|ENSMUSG00000040990.18|SH3-domain kinase binding protein 1
mm39_v1_chr14_+_25459630_25459651	0.6127366651735945	UGCAUAG	ENSMUST00000162645.8|Zmiz1|ENSMUSG00000007817.16|zinc finger, MIZ-type containing 1
mm39_v1_chr11_-_100541519_100541575	0.6125919010525476	UGCAUAG	ENSMUST00000103119.10|Zfp385c|ENSMUSG00000014198.16|zinc finger protein 385C
mm39_v1_chr2_-_45003270_45003296	0.5965684292040574	UGCAUAG	ENSMUST00000202935.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000068415.11|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000127520.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr4_-_142939260_142939303	0.5940091662493436	UGCAUAG	ENSMUST00000105778.8|Prdm2|ENSMUSG00000057637.14|PR domain containing 2, with ZNF domain	ENSMUST00000134791.2|Prdm2|ENSMUSG00000057637.14|PR domain containing 2, with ZNF domain
mm39_v1_chr9_+_57818243_57818334	0.5838321438376047	UGCAUAG	ENSMUST00000216925.2|Ubl7|ENSMUSG00000055720.11|ubiquitin-like 7 (bone marrow stromal cell-derived)	ENSMUST00000163329.2|Ubl7|ENSMUSG00000055720.11|ubiquitin-like 7 (bone marrow stromal cell-derived)	ENSMUST00000213654.2|Ubl7|ENSMUSG00000055720.11|ubiquitin-like 7 (bone marrow stromal cell-derived)	ENSMUST00000217132.2|Ubl7|ENSMUSG00000055720.11|ubiquitin-like 7 (bone marrow stromal cell-derived)	ENSMUST00000216841.2|Ubl7|ENSMUSG00000055720.11|ubiquitin-like 7 (bone marrow stromal cell-derived)	ENSMUST00000214086.2|Ubl7|ENSMUSG00000055720.11|ubiquitin-like 7 (bone marrow stromal cell-derived)
mm39_v1_chr11_+_101932328_101932335	0.5798262871471775	UGCAUAG	ENSMUST00000123895.8|Cd300lg|ENSMUSG00000017309.12|CD300 molecule like family member G	ENSMUST00000017453.12|Cd300lg|ENSMUSG00000017309.12|CD300 molecule like family member G	ENSMUST00000107163.9|Cd300lg|ENSMUSG00000017309.12|CD300 molecule like family member G	ENSMUST00000107164.3|Cd300lg|ENSMUSG00000017309.12|CD300 molecule like family member G
mm39_v1_chr14_+_99536111_99536133	0.5740036704357109	UGCAUAG	ENSMUST00000005279.8|Klf5|ENSMUSG00000005148.9|Kruppel-like factor 5
mm39_v1_chr8_-_11058458_11058458	0.5730100853644342	UGCAUAG	ENSMUST00000040514.8|Irs2|ENSMUSG00000038894.8|insulin receptor substrate 2
mm39_v1_chr5_-_120726721_120726743	0.5693438660123378	UGCAUAG	ENSMUST00000046426.10|Tpcn1|ENSMUSG00000032741.10|two pore channel 1
mm39_v1_chr5_-_110596352_110596385	0.5629872115697429	UGCAUAG	ENSMUST00000069483.12|Fbrsl1|ENSMUSG00000043323.18|fibrosin-like 1	ENSMUST00000200293.2|Fbrsl1|ENSMUSG00000043323.18|fibrosin-like 1
mm39_v1_chr15_-_66158445_66158509	0.554633973475509	UGCAUAG	ENSMUST00000070256.9|Kcnq3|ENSMUSG00000056258.10|potassium voltage-gated channel, subfamily Q, member 3
mm39_v1_chr17_+_15163446_15163463	0.5391601274461131	UGCAUAG	ENSMUST00000052691.9|1600012H06Rik|ENSMUSG00000050088.10|RIKEN cDNA 1600012H06 gene
mm39_v1_chr1_-_155912159_155912200	0.5033863347270753	UGCAUAG	ENSMUST00000097527.10|Tor1aip1|ENSMUSG00000026466.17|torsin A interacting protein 1
mm39_v1_chr3_+_141170941_141170983	0.4965730592735668	UGCAUAG	ENSMUST00000106236.9|Unc5c|ENSMUSG00000059921.16|unc-5 netrin receptor C
mm39_v1_chr5_-_122917341_122917496	0.4925019264684978	UGCAUAG	ENSMUST00000198257.5|Camkk2|ENSMUSG00000029471.14|calcium/calmodulin-dependent protein kinase kinase 2, beta	ENSMUST00000199599.2|Camkk2|ENSMUSG00000029471.14|calcium/calmodulin-dependent protein kinase kinase 2, beta	ENSMUST00000196742.2|Camkk2|ENSMUSG00000029471.14|calcium/calmodulin-dependent protein kinase kinase 2, beta	ENSMUST00000200109.5|Camkk2|ENSMUSG00000029471.14|calcium/calmodulin-dependent protein kinase kinase 2, beta	ENSMUST00000111668.8|Camkk2|ENSMUSG00000029471.14|calcium/calmodulin-dependent protein kinase kinase 2, beta
mm39_v1_chr6_+_100681670_100681721	0.4802811082264721	UGCAUAG	ENSMUST00000032157.9|Gxylt2|ENSMUSG00000030074.10|glucoside xylosyltransferase 2
mm39_v1_chr18_-_15196612_15196675	0.4741230156068975	UGCAUAG	ENSMUST00000168989.9|Kctd1|ENSMUSG00000036225.16|potassium channel tetramerisation domain containing 1
mm39_v1_chr7_-_80052491_80052510	0.4715456381552369	UGCAUAG	ENSMUST00000122232.8|Furin|ENSMUSG00000030530.16|furin (paired basic amino acid cleaving enzyme)
mm39_v1_chr2_+_76236870_76236936	0.46049646860049037	UGCAUAG	ENSMUST00000077972.11|Osbpl6|ENSMUSG00000042359.19|oxysterol binding protein-like 6	ENSMUST00000111929.8|Osbpl6|ENSMUSG00000042359.19|oxysterol binding protein-like 6	ENSMUST00000111930.9|Osbpl6|ENSMUSG00000042359.19|oxysterol binding protein-like 6
mm39_v1_chr8_-_70449018_70449038	0.4521505545153927	UGCAUAG	ENSMUST00000065169.12|Gatad2a|ENSMUSG00000036180.16|GATA zinc finger domain containing 2A	ENSMUST00000212478.2|Gatad2a|ENSMUSG00000036180.16|GATA zinc finger domain containing 2A
mm39_v1_chr15_-_50753061_50753118	0.43756222928059685	UGCAUAG	ENSMUST00000165201.9|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1	ENSMUST00000184458.8|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1
mm39_v1_chr1_+_88998115_88998147	0.43730660480255357	UGCAUAG	ENSMUST00000066279.11|Sh3bp4|ENSMUSG00000036206.13|SH3-domain binding protein 4
mm39_v1_chr7_+_48896560_48896592	0.43400804803651183	UGCAUAG	ENSMUST00000184945.8|Nav2|ENSMUSG00000052512.18|neuron navigator 2
mm39_v1_chr3_-_133250129_133250174	0.43331817235799347	UGCAUAG	ENSMUST00000196398.5|Tet2|ENSMUSG00000040943.13|tet methylcytosine dioxygenase 2	ENSMUST00000098603.8|Tet2|ENSMUSG00000040943.13|tet methylcytosine dioxygenase 2
mm39_v1_chr10_-_5872386_5872405	0.42268078098971074	UGCAUAG	ENSMUST00000131996.8|Rgs17|ENSMUSG00000019775.18|regulator of G-protein signaling 17	ENSMUST00000064225.14|Rgs17|ENSMUSG00000019775.18|regulator of G-protein signaling 17
mm39_v1_chr7_+_121666388_121666438	0.42200193261077745	UGCAUAG	ENSMUST00000033158.6|Ubfd1|ENSMUSG00000030870.13|ubiquitin family domain containing 1
mm39_v1_chr2_-_73722874_73722900	0.4107613539787202	UGCAUAG	ENSMUST00000136958.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112010.9|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000128531.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112017.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2
mm39_v1_chr9_-_32452885_32452898	0.3891767522957088	UGCAUAG	ENSMUST00000016231.14|Fli1|ENSMUSG00000016087.14|Friend leukemia integration 1
mm39_v1_chr7_+_80643394_80643445	0.3871885099957573	UGCAUAG	ENSMUST00000107353.3|Zfp592|ENSMUSG00000005621.12|zinc finger protein 592
mm39_v1_chr7_-_30288142_30288182	0.38565388287945473	UGCAUAG	ENSMUST00000006470.14|Kmt2b|ENSMUSG00000006307.17|lysine (K)-specific methyltransferase 2B	ENSMUST00000108154.9|Kmt2b|ENSMUSG00000006307.17|lysine (K)-specific methyltransferase 2B
mm39_v1_chr8_+_47192767_47192829	0.38465780112767406	UGCAUAG	ENSMUST00000034041.9|Irf2|ENSMUSG00000031627.10|interferon regulatory factor 2	ENSMUST00000208507.2|Irf2|ENSMUSG00000031627.10|interferon regulatory factor 2	ENSMUST00000207105.2|Irf2|ENSMUSG00000031627.10|interferon regulatory factor 2
mm39_v1_chr8_-_110464345_110464418	0.38075278291105596	UGCAUAG	ENSMUST00000212605.2|Atxn1l|ENSMUSG00000069895.5|ataxin 1-like	ENSMUST00000093162.4|Atxn1l|ENSMUSG00000069895.5|ataxin 1-like	ENSMUST00000212726.2|Atxn1l|ENSMUSG00000069895.5|ataxin 1-like
mm39_v1_chr15_-_58078274_58078328	0.3776741959834381	UGCAUAG	ENSMUST00000022986.8|Fbxo32|ENSMUSG00000022358.8|F-box protein 32
mm39_v1_chr5_+_43390513_43390580	0.3772797968214084	UGCAUAG	ENSMUST00000166713.9|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2	ENSMUST00000169035.8|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2	ENSMUST00000114065.9|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2
mm39_v1_chr1_-_13442658_13442681	0.37723710100329155	UGCAUAG	ENSMUST00000081713.11|Ncoa2|ENSMUSG00000005886.15|nuclear receptor coactivator 2
mm39_v1_chr15_+_80595486_80595541	0.3765913643267775	UGCAUAG	ENSMUST00000067689.9|Tnrc6b|ENSMUSG00000047888.11|trinucleotide repeat containing 6b
mm39_v1_chr5_+_111027654_111027708	0.3743472121211735	UGCAUAG	ENSMUST00000040111.10|Ttc28|ENSMUSG00000033209.18|tetratricopeptide repeat domain 28	ENSMUST00000156290.9|Ttc28|ENSMUSG00000033209.18|tetratricopeptide repeat domain 28
mm39_v1_chr3_-_131138541_131138589	0.37021176470420947	UGCAUAG	ENSMUST00000090246.5|Sgms2|ENSMUSG00000050931.8|sphingomyelin synthase 2	ENSMUST00000126569.2|Sgms2|ENSMUSG00000050931.8|sphingomyelin synthase 2
mm39_v1_chr5_+_64960705_64960731	0.3687174084629733	UGCAUAG	ENSMUST00000165536.8|Klf3|ENSMUSG00000029178.15|Kruppel-like factor 3 (basic)
mm39_v1_chr11_+_117545618_117545655	0.36630424961168356	UGCAUAG	ENSMUST00000106344.8|Tnrc6c|ENSMUSG00000025571.14|trinucleotide repeat containing 6C
mm39_v1_chr10_+_79690452_79690476	0.3565208276965077	UGCAUAG	ENSMUST00000165704.8|Ptbp1|ENSMUSG00000006498.17|polypyrimidine tract binding protein 1
mm39_v1_chr1_-_30912662_30912738	0.34143658271257216	UGCAUAG	ENSMUST00000186733.7|Phf3|ENSMUSG00000048874.16|PHD finger protein 3
mm39_v1_chr5_+_130477642_130477671	0.33770185956843995	UGCAUAG	ENSMUST00000111288.4|Caln1|ENSMUSG00000060371.13|calneuron 1
mm39_v1_chr17_-_17845293_17845329	0.3315201563059422	UGCAUAG	ENSMUST00000041047.4|Lnpep|ENSMUSG00000023845.8|leucyl/cystinyl aminopeptidase
mm39_v1_chr8_+_27575611_27575626	0.3199149228418058	UGCAUAG	ENSMUST00000178514.8|Adgra2|ENSMUSG00000031486.16|adhesion G protein-coupled receptor A2	ENSMUST00000033876.14|Adgra2|ENSMUSG00000031486.16|adhesion G protein-coupled receptor A2
mm39_v1_chr4_+_152410291_152410333	0.3141838406791912	UGCAUAG	ENSMUST00000103191.11|Rpl22|ENSMUSG00000028936.16|ribosomal protein L22	ENSMUST00000139685.8|Rpl22|ENSMUSG00000028936.16|ribosomal protein L22	ENSMUST00000188151.2|Rpl22|ENSMUSG00000028936.16|ribosomal protein L22
mm39_v1_chr5_-_106844685_106844707	0.30949633049380676	UGCAUAG	ENSMUST00000127434.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000112696.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000112698.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644
mm39_v1_chr10_-_81262948_81263021	0.30743317913897455	UGCAUAG	ENSMUST00000078185.14|Nfic|ENSMUSG00000055053.19|nuclear factor I/C	ENSMUST00000020461.15|Nfic|ENSMUSG00000055053.19|nuclear factor I/C	ENSMUST00000105321.10|Nfic|ENSMUSG00000055053.19|nuclear factor I/C
mm39_v1_chr9_-_108067552_108067617	0.3070763992735326	UGCAUAG	ENSMUST00000035208.14|Bsn|ENSMUSG00000032589.15|bassoon
mm39_v1_chr13_-_12121831_12121871	0.3043013991117928	UGCAUAG	ENSMUST00000021750.15|Ryr2|ENSMUSG00000021313.17|ryanodine receptor 2, cardiac	ENSMUST00000170156.3|Ryr2|ENSMUSG00000021313.17|ryanodine receptor 2, cardiac	ENSMUST00000220597.2|Ryr2|ENSMUSG00000021313.17|ryanodine receptor 2, cardiac
mm39_v1_chr12_+_71062733_71062837	0.3040442249649348	UGCAUAG	ENSMUST00000046305.12|Arid4a|ENSMUSG00000048118.18|AT rich interactive domain 4A (RBP1-like)
mm39_v1_chr13_+_13764982_13765058	0.3017137878440217	UGCAUAG	ENSMUST00000110559.3|Lyst|ENSMUSG00000019726.13|lysosomal trafficking regulator
mm39_v1_chr14_-_103336990_103337007	0.30021787410701184	UGCAUAG	ENSMUST00000022720.15|Fbxl3|ENSMUSG00000022124.16|F-box and leucine-rich repeat protein 3	ENSMUST00000144141.8|Fbxl3|ENSMUSG00000022124.16|F-box and leucine-rich repeat protein 3
mm39_v1_chr6_+_54793894_54793905	0.29876996254628224	UGCAUAG	ENSMUST00000079869.13|Znrf2|ENSMUSG00000058446.15|zinc and ring finger 2
mm39_v1_chr14_-_25769457_25769513	0.2979812741714256	UGCAUAG	ENSMUST00000069180.8|Zcchc24|ENSMUSG00000055538.8|zinc finger, CCHC domain containing 24
mm39_v1_chr5_-_136596299_136596390	0.29571089453274974	UGCAUAG	ENSMUST00000004097.16|Cux1|ENSMUSG00000029705.18|cut-like homeobox 1
mm39_v1_chr5_+_30745447_30745514	0.2915725944003378	UGCAUAG	ENSMUST00000066295.5|Kcnk3|ENSMUSG00000049265.9|potassium channel, subfamily K, member 3
mm39_v1_chr12_+_4967376_4967438	0.2879866591028213	UGCAUAG	ENSMUST00000045664.7|Atad2b|ENSMUSG00000052812.6|ATPase family, AAA domain containing 2B
mm39_v1_chr2_+_136555364_136555412	0.28756304585113873	UGCAUAG	ENSMUST00000028727.11|Snap25|ENSMUSG00000027273.14|synaptosomal-associated protein 25	ENSMUST00000110098.4|Snap25|ENSMUSG00000027273.14|synaptosomal-associated protein 25
mm39_v1_chr17_-_45860580_45860603	0.28408665487685963	UGCAUAG	ENSMUST00000180252.3|Tmem151b|ENSMUSG00000096847.3|transmembrane protein 151B
mm39_v1_chr3_+_107008867_107008883	0.2795695750563761	UGCAUAG	ENSMUST00000038695.6|Kcna2|ENSMUSG00000040724.6|potassium voltage-gated channel, shaker-related subfamily, member 2
mm39_v1_chr4_-_19708910_19709004	0.27767364227759816	UGCAUAG	ENSMUST00000108246.9|Wwp1|ENSMUSG00000041058.16|WW domain containing E3 ubiquitin protein ligase 1
mm39_v1_chr15_-_53209513_53209565	0.2767764241394128	UGCAUAG	ENSMUST00000077273.9|Ext1|ENSMUSG00000061731.10|exostosin glycosyltransferase 1
mm39_v1_chr2_-_33321306_33321359	0.2763814680328491	UGCAUAG	ENSMUST00000113158.8|Zbtb34|ENSMUSG00000068966.11|zinc finger and BTB domain containing 34
mm39_v1_chr3_+_97565528_97565656	0.2736103349458065	UGCAUAG	ENSMUST00000045743.13|Prkab2|ENSMUSG00000038205.13|protein kinase, AMP-activated, beta 2 non-catalytic subunit
mm39_v1_chr17_-_45047521_45047561	0.2727518132150888	UGCAUAG	ENSMUST00000113572.9|Runx2|ENSMUSG00000039153.18|runt related transcription factor 2
mm39_v1_chr7_-_45367382_45367426	0.27215994189312	UGCAUAG	ENSMUST00000107737.11|Sphk2|ENSMUSG00000057342.16|sphingosine kinase 2
mm39_v1_chr8_+_117884711_117884876	0.2626483349492153	UGCAUAG	ENSMUST00000064488.11|Gan|ENSMUSG00000052557.12|giant axonal neuropathy	ENSMUST00000162997.3|Gan|ENSMUSG00000052557.12|giant axonal neuropathy
mm39_v1_chr13_+_44884740_44884752	0.2603733425178755	UGCAUAG	ENSMUST00000173246.8|Jarid2|ENSMUSG00000038518.16|jumonji, AT rich interactive domain 2
mm39_v1_chr16_-_94114415_94114445	0.2576740002511889	UGCAUAG	ENSMUST00000163193.9|Hlcs|ENSMUSG00000040820.17|holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)
mm39_v1_chr7_+_113113037_113113053	0.2571100217050399	UGCAUAG	ENSMUST00000033018.15|Far1|ENSMUSG00000030759.17|fatty acyl CoA reductase 1
mm39_v1_chr9_-_54467419_54467509	0.25685618913980657	UGCAUAG	ENSMUST00000041901.7|Cib2|ENSMUSG00000037493.7|calcium and integrin binding family member 2
mm39_v1_chr11_+_79230618_79230719	0.25448460537335654	UGCAUAG	ENSMUST00000219057.2|Nf1|ENSMUSG00000020716.17|neurofibromin 1	ENSMUST00000108251.9|Nf1|ENSMUSG00000020716.17|neurofibromin 1	ENSMUST00000071325.9|Nf1|ENSMUSG00000020716.17|neurofibromin 1
mm39_v1_chr19_-_59932079_59932110	0.2543005911042082	UGCAUAG	ENSMUST00000171986.8|Rab11fip2|ENSMUSG00000040022.15|RAB11 family interacting protein 2 (class I)
mm39_v1_chr5_+_77413282_77413396	0.2542571509212017	UGCAUAG	ENSMUST00000080359.12|Rest|ENSMUSG00000029249.16|RE1-silencing transcription factor
mm39_v1_chr7_-_28297565_28297610	0.25319404764191145	UGCAUAG	ENSMUST00000040531.9|Samd4b|ENSMUSG00000109336.2|sterile alpha motif domain containing 4B	ENSMUST00000108283.8|Pak4|ENSMUSG00000030602.14|p21 (RAC1) activated kinase 4
mm39_v1_chr11_-_104333059_104333117	0.252745680881709	UGCAUAG	ENSMUST00000106977.8|Kansl1|ENSMUSG00000018412.17|KAT8 regulatory NSL complex subunit 1	ENSMUST00000106972.8|Kansl1|ENSMUSG00000018412.17|KAT8 regulatory NSL complex subunit 1
mm39_v1_chr7_+_116980173_116980249	0.25043970691795636	UGCAUAG	ENSMUST00000032892.7|Xylt1|ENSMUSG00000030657.12|xylosyltransferase 1
mm39_v1_chr11_+_87959067_87959115	0.2498151682570529	UGCAUAG	ENSMUST00000018521.11|Vezf1|ENSMUSG00000018377.11|vascular endothelial zinc finger 1
mm39_v1_chr7_+_100355798_100355909	0.24905860706158675	UGCAUAG	ENSMUST00000107042.9|Fam168a|ENSMUSG00000029461.18|family with sequence similarity 168, member A	ENSMUST00000207564.2|Fam168a|ENSMUSG00000029461.18|family with sequence similarity 168, member A	ENSMUST00000049053.9|Fam168a|ENSMUSG00000029461.18|family with sequence similarity 168, member A
mm39_v1_chr6_-_83418656_83418666	0.24734470304177222	UGCAUAG	ENSMUST00000089622.11|Tet3|ENSMUSG00000034832.16|tet methylcytosine dioxygenase 3
mm39_v1_chr1_-_77491683_77491779	0.2453421732933503	UGCAUAG	ENSMUST00000186930.2|Epha4|ENSMUSG00000026235.15|Eph receptor A4	ENSMUST00000027451.13|Epha4|ENSMUSG00000026235.15|Eph receptor A4	ENSMUST00000188797.7|Epha4|ENSMUSG00000026235.15|Eph receptor A4
mm39_v1_chr4_-_122779837_122779861	0.24009024369297358	UGCAUAG	ENSMUST00000106255.8|Cap1|ENSMUSG00000028656.15|CAP, adenylate cyclase-associated protein 1 (yeast)	ENSMUST00000106257.10|Cap1|ENSMUSG00000028656.15|CAP, adenylate cyclase-associated protein 1 (yeast)
mm39_v1_chr2_-_75534985_75535023	0.2392019127723472	UGCAUAG	ENSMUST00000102672.5|Nfe2l2|ENSMUSG00000015839.7|nuclear factor, erythroid derived 2, like 2
mm39_v1_chr9_+_74860335_74860374	0.23728875096647137	UGCAUAG	ENSMUST00000170846.8|Fam214a|ENSMUSG00000034858.17|family with sequence similarity 214, member A
mm39_v1_chr8_+_27467330_27467382	0.23722998050235072	UGCAUAG	ENSMUST00000127097.9|Zfp703|ENSMUSG00000085795.9|zinc finger protein 703	ENSMUST00000154256.3|Zfp703|ENSMUSG00000085795.9|zinc finger protein 703
mm39_v1_chr12_-_46865709_46865720	0.23622104957690768	UGCAUAG	ENSMUST00000021438.8|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr12_+_4642987_4643091	0.23496924626326	UGCAUAG	ENSMUST00000062580.8|Itsn2|ENSMUSG00000020640.11|intersectin 2	ENSMUST00000220311.2|Itsn2|ENSMUSG00000020640.11|intersectin 2
mm39_v1_chr13_-_18118736_18118824	0.23490263586481752	UGCAUAG	ENSMUST00000009003.9|Rala|ENSMUSG00000008859.9|v-ral simian leukemia viral oncogene A (ras related)
mm39_v1_chr5_-_114911548_114911577	0.23471612487994103	UGCAUAG	ENSMUST00000178440.8|Git2|ENSMUSG00000041890.18|GIT ArfGAP 2	ENSMUST00000043283.14|Git2|ENSMUSG00000041890.18|GIT ArfGAP 2	ENSMUST00000112185.9|Git2|ENSMUSG00000041890.18|GIT ArfGAP 2	ENSMUST00000155908.8|Git2|ENSMUSG00000041890.18|GIT ArfGAP 2
mm39_v1_chr12_+_16944896_16944904	0.2330556997641359	UGCAUAG	ENSMUST00000020904.8|Rock2|ENSMUSG00000020580.11|Rho-associated coiled-coil containing protein kinase 2
mm39_v1_chr1_+_23801007_23801080	0.2327969728590307	UGCAUAG	ENSMUST00000063663.6|B3gat2|ENSMUSG00000026156.9|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)
mm39_v1_chr5_-_122187884_122187947	0.22815835328342662	UGCAUAG	ENSMUST00000111752.10|Cux2|ENSMUSG00000042589.19|cut-like homeobox 2
mm39_v1_chr2_-_17735847_17735898	0.2264780107898369	UGCAUAG	ENSMUST00000028080.12|Nebl|ENSMUSG00000053702.17|nebulette
mm39_v1_chr13_+_5911481_5911521	0.22476292935501388	UGCAUAG	ENSMUST00000000080.8|Klf6|ENSMUSG00000000078.8|Kruppel-like factor 6
mm39_v1_chr13_-_105191403_105191438	0.22361824862122429	UGCAUAG	ENSMUST00000063551.7|Rgs7bp|ENSMUSG00000021719.10|regulator of G-protein signalling 7 binding protein
mm39_v1_chr4_+_122889737_122889753	0.22268870165587215	UGCAUAG	ENSMUST00000106252.9|Mycl|ENSMUSG00000028654.14|v-myc avian myelocytomatosis viral oncogene lung carcinoma derived
mm39_v1_chr16_+_55895786_55895855	0.22238204599525474	UGCAUAG	ENSMUST00000049128.11|Senp7|ENSMUSG00000052917.16|SUMO1/sentrin specific peptidase 7	ENSMUST00000089362.9|Senp7|ENSMUSG00000052917.16|SUMO1/sentrin specific peptidase 7	ENSMUST00000202799.4|Senp7|ENSMUSG00000052917.16|SUMO1/sentrin specific peptidase 7	ENSMUST00000201011.2|Senp7|ENSMUSG00000052917.16|SUMO1/sentrin specific peptidase 7	ENSMUST00000202000.2|Senp7|ENSMUSG00000052917.16|SUMO1/sentrin specific peptidase 7
mm39_v1_chr11_+_68979332_68979380	0.22221727193791996	UGCAUAG	ENSMUST00000117780.2|Vamp2|ENSMUSG00000020894.17|vesicle-associated membrane protein 2
mm39_v1_chr3_-_89294430_89294496	0.21881503872170047	UGCAUAG	ENSMUST00000107433.8|Zbtb7b|ENSMUSG00000028042.16|zinc finger and BTB domain containing 7B
mm39_v1_chr5_-_51711237_51711264	0.21825947671898646	UGCAUAG	ENSMUST00000132734.8|Ppargc1a|ENSMUSG00000029167.14|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm39_v1_chr9_-_21504101_21504144	0.2181247433611059	UGCAUAG	ENSMUST00000180365.9|Yipf2|ENSMUSG00000032182.16|Yip1 domain family, member 2	ENSMUST00000213809.2|Yipf2|ENSMUSG00000032182.16|Yip1 domain family, member 2	ENSMUST00000034700.15|Yipf2|ENSMUSG00000032182.16|Yip1 domain family, member 2
mm39_v1_chr4_+_123798625_123798643	0.2176325216326876	UGCAUAG	ENSMUST00000030400.14|Mycbp|ENSMUSG00000028647.14|MYC binding protein
mm39_v1_chr2_-_166904902_166904967	0.2174520873554898	UGCAUAG	ENSMUST00000048988.14|Znfx1|ENSMUSG00000039501.15|zinc finger, NFX1-type containing 1
mm39_v1_chr16_-_97723753_97723833	0.21296529102447354	UGCAUAG	ENSMUST00000170757.3|C2cd2|ENSMUSG00000045975.9|C2 calcium-dependent domain containing 2
mm39_v1_chr1_-_133728779_133728805	0.21259277267505935	UGCAUAG	ENSMUST00000143567.8|Atp2b4|ENSMUSG00000026463.18|ATPase, Ca++ transporting, plasma membrane 4
mm39_v1_chr14_+_30201569_30201642	0.20903580782890813	UGCAUAG	ENSMUST00000022535.9|Dcp1a|ENSMUSG00000021962.10|decapping mRNA 1A	ENSMUST00000223658.2|Dcp1a|ENSMUSG00000021962.10|decapping mRNA 1A
mm39_v1_chr3_-_101017594_101017652	0.2078988769666585	UGCAUAG	ENSMUST00000102694.4|Ptgfrn|ENSMUSG00000027864.10|prostaglandin F2 receptor negative regulator
mm39_v1_chr11_-_103303480_103303537	0.20677682400767508	UGCAUAG	ENSMUST00000041272.10|Plekhm1|ENSMUSG00000034247.10|pleckstrin homology domain containing, family M (with RUN domain) member 1
mm39_v1_chr16_+_80997580_80997629	0.20450531510890785	UGCAUAG	ENSMUST00000037785.14|Ncam2|ENSMUSG00000022762.19|neural cell adhesion molecule 2	ENSMUST00000067602.5|Ncam2|ENSMUSG00000022762.19|neural cell adhesion molecule 2
mm39_v1_chr5_-_140634773_140634807	0.20284081689725567	UGCAUAG	ENSMUST00000197452.5|Ttyh3|ENSMUSG00000036565.8|tweety family member 3	ENSMUST00000042661.8|Ttyh3|ENSMUSG00000036565.8|tweety family member 3
mm39_v1_chr9_-_44792575_44792621	0.19990657542615564	UGCAUAG	ENSMUST00000114689.8|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A	ENSMUST00000002095.11|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A	ENSMUST00000128768.3|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A
mm39_v1_chr14_-_65499835_65499941	0.19929025262406874	UGCAUAG	ENSMUST00000131309.3|Fzd3|ENSMUSG00000007989.8|frizzled class receptor 3
mm39_v1_chrX_-_165992311_165992475	0.1980132218016974	UGCAUAG	ENSMUST00000112172.4|Tmsb4x|ENSMUSG00000049775.17|thymosin, beta 4, X chromosome
mm39_v1_chr10_-_115220293_115220350	0.1921691257538822	UGCAUAG	ENSMUST00000020346.6|Thap2|ENSMUSG00000020137.6|THAP domain containing, apoptosis associated protein 2	ENSMUST00000218842.2|Thap2|ENSMUSG00000020137.6|THAP domain containing, apoptosis associated protein 2	ENSMUST00000218989.2|Thap2|ENSMUSG00000020137.6|THAP domain containing, apoptosis associated protein 2
mm39_v1_chr8_+_36054919_36054981	0.1914278503761729	UGCAUAG	ENSMUST00000037666.6|Mfhas1|ENSMUSG00000070056.7|malignant fibrous histiocytoma amplified sequence 1
mm39_v1_chr2_+_172187485_172187513	0.19038605686714533	UGCAUAG	ENSMUST00000028995.5|Fam210b|ENSMUSG00000027495.5|family with sequence similarity 210, member B
mm39_v1_chr1_+_42734889_42734937	0.1841892380811299	UGCAUAG	ENSMUST00000054883.4|Pou3f3|ENSMUSG00000045515.5|POU domain, class 3, transcription factor 3
mm39_v1_chr11_+_95603494_95603529	0.18242489969295703	UGCAUAG	ENSMUST00000107717.8|Zfp652|ENSMUSG00000075595.10|zinc finger protein 652
mm39_v1_chr11_+_31822211_31822263	0.1799357258390531	UGCAUAG	ENSMUST00000020543.13|Cpeb4|ENSMUSG00000020300.15|cytoplasmic polyadenylation element binding protein 4	ENSMUST00000109412.9|Cpeb4|ENSMUSG00000020300.15|cytoplasmic polyadenylation element binding protein 4
mm39_v1_chr10_+_7556948_7556990	0.17985155761577795	UGCAUAG	ENSMUST00000165952.9|Lats1|ENSMUSG00000040021.14|large tumor suppressor
mm39_v1_chr6_+_38410848_38410901	0.1798056955965738	UGCAUAG	ENSMUST00000160583.8|Ubn2|ENSMUSG00000038538.18|ubinuclein 2
mm39_v1_chr14_+_49303952_49304045	0.17681383246701457	UGCAUAG	ENSMUST00000037473.6|Ap5m1|ENSMUSG00000036291.7|adaptor-related protein complex 5, mu 1 subunit	ENSMUST00000228238.2|Ap5m1|ENSMUSG00000036291.7|adaptor-related protein complex 5, mu 1 subunit
mm39_v1_chr13_-_25015392_25015500	0.1762580781203185	UGCAUAG	ENSMUST00000006900.7|Acot13|ENSMUSG00000006717.8|acyl-CoA thioesterase 13
mm39_v1_chr11_-_94568228_94568341	0.17327868201541366	UGCAUAG	ENSMUST00000116349.9|Xylt2|ENSMUSG00000020868.16|xylosyltransferase II
mm39_v1_chr13_-_103470937_103471007	0.17208038365780837	UGCAUAG	ENSMUST00000167058.8|Mast4|ENSMUSG00000034751.18|microtubule associated serine/threonine kinase family member 4	ENSMUST00000164111.2|Mast4|ENSMUSG00000034751.18|microtubule associated serine/threonine kinase family member 4
mm39_v1_chr14_-_105414294_105414361	0.17148978509444066	UGCAUAG	ENSMUST00000163545.8|Rbm26|ENSMUSG00000022119.16|RNA binding motif protein 26
mm39_v1_chr5_-_66775979_66776056	0.16869032844639834	UGCAUAG	ENSMUST00000162382.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000159786.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000162349.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000087256.12|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000160103.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000160870.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2
mm39_v1_chr8_-_70892204_70892261	0.16805483133277524	UGCAUAG	ENSMUST00000076615.6|Crtc1|ENSMUSG00000003575.14|CREB regulated transcription coactivator 1
mm39_v1_chr12_+_52746158_52746186	0.16735758467556666	UGCAUAG	ENSMUST00000095737.5|Akap6|ENSMUSG00000061603.9|A kinase (PRKA) anchor protein 6
mm39_v1_chrX_+_7688528_7688528	0.16515209426141658	UGCAUAG	ENSMUST00000009875.5|Kcnd1|ENSMUSG00000009731.5|potassium voltage-gated channel, Shal-related family, member 1
mm39_v1_chr11_-_86435579_86435631	0.16269786557034155	UGCAUAG	ENSMUST00000138810.3|Rps6kb1|ENSMUSG00000020516.16|ribosomal protein S6 kinase, polypeptide 1	ENSMUST00000058286.9|Rps6kb1|ENSMUSG00000020516.16|ribosomal protein S6 kinase, polypeptide 1	ENSMUST00000154617.8|Rps6kb1|ENSMUSG00000020516.16|ribosomal protein S6 kinase, polypeptide 1
mm39_v1_chr14_-_75185281_75185324	0.16180283138381404	UGCAUAG	ENSMUST00000088970.7|Lrch1|ENSMUSG00000068015.9|leucine-rich repeats and calponin homology (CH) domain containing 1	ENSMUST00000228252.2|Lrch1|ENSMUSG00000068015.9|leucine-rich repeats and calponin homology (CH) domain containing 1
mm39_v1_chr8_-_26275182_26275315	0.16060734827160647	UGCAUAG	ENSMUST00000038498.10|Bag4|ENSMUSG00000037316.10|BCL2-associated athanogene 4
mm39_v1_chr1_-_190711151_190711199	0.1561971715503728	UGCAUAG	ENSMUST00000047409.9|Vash2|ENSMUSG00000037568.13|vasohibin 2
mm39_v1_chr2_-_73143045_73143068	0.15385185760907977	UGCAUAG	ENSMUST00000058615.10|Cir1|ENSMUSG00000041777.13|corepressor interacting with RBPJ, 1
mm39_v1_chr1_+_178014983_178015280	0.14824918723844896	UGCAUAG	ENSMUST00000161075.8|Desi2|ENSMUSG00000026502.14|desumoylating isopeptidase 2	ENSMUST00000027783.14|Desi2|ENSMUSG00000026502.14|desumoylating isopeptidase 2
mm39_v1_chr1_-_135513443_135513555	0.1479021115176677	UGCAUAG	ENSMUST00000067414.13|Nav1|ENSMUSG00000009418.17|neuron navigator 1
mm39_v1_chr2_+_32425327_32425371	0.14754773938290486	UGCAUAG	ENSMUST00000133512.2|Fam102a|ENSMUSG00000039157.13|family with sequence similarity 102, member A	ENSMUST00000048375.6|Fam102a|ENSMUSG00000039157.13|family with sequence similarity 102, member A
mm39_v1_chr4_-_57301791_57301837	0.14537102507115002	UGCAUAG	ENSMUST00000075637.11|Ptpn3|ENSMUSG00000038764.15|protein tyrosine phosphatase, non-receptor type 3
mm39_v1_chr5_+_86952072_86952135	0.14458396652055927	UGCAUAG	ENSMUST00000119339.8|Ythdc1|ENSMUSG00000035851.15|YTH domain containing 1	ENSMUST00000120498.8|Ythdc1|ENSMUSG00000035851.15|YTH domain containing 1
mm39_v1_chr15_-_71599664_71599697	0.1440513562524736	UGCAUAG	ENSMUST00000022953.10|Fam135b|ENSMUSG00000036800.9|family with sequence similarity 135, member B
mm39_v1_chr7_-_67022520_67022609	0.14399226793619813	UGCAUAG	ENSMUST00000156690.8|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A	ENSMUST00000107476.8|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A	ENSMUST00000076325.12|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A	ENSMUST00000032776.15|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A	ENSMUST00000133074.2|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A
mm39_v1_chrY_-_1245685_1245770	0.14215414467557858	UGCAUAG	ENSMUST00000143286.8|Uty|ENSMUSG00000068457.15|ubiquitously transcribed tetratricopeptide repeat containing, Y-linked	ENSMUST00000137048.8|Uty|ENSMUSG00000068457.15|ubiquitously transcribed tetratricopeptide repeat containing, Y-linked	ENSMUST00000069309.14|Uty|ENSMUSG00000068457.15|ubiquitously transcribed tetratricopeptide repeat containing, Y-linked	ENSMUST00000139365.8|Uty|ENSMUSG00000068457.15|ubiquitously transcribed tetratricopeptide repeat containing, Y-linked	ENSMUST00000154004.8|Uty|ENSMUSG00000068457.15|ubiquitously transcribed tetratricopeptide repeat containing, Y-linked
mm39_v1_chr7_-_44542098_44542136	0.1416011616524465	UGCAUAG	ENSMUST00000003049.8|Med25|ENSMUSG00000002968.10|mediator complex subunit 25
mm39_v1_chr4_-_133480922_133480977	0.1405617609579072	UGCAUAG	ENSMUST00000145664.9|Arid1a|ENSMUSG00000007880.17|AT rich interactive domain 1A (SWI-like)	ENSMUST00000105897.10|Arid1a|ENSMUSG00000007880.17|AT rich interactive domain 1A (SWI-like)
mm39_v1_chr10_+_107998219_107998269	0.13752137395080377	UGCAUAG	ENSMUST00000070663.6|Ppp1r12a|ENSMUSG00000019907.11|protein phosphatase 1, regulatory subunit 12A
mm39_v1_chr9_-_42035560_42035631	0.1369273191833199	UGCAUAG	ENSMUST00000060989.9|Sorl1|ENSMUSG00000049313.9|sortilin-related receptor, LDLR class A repeats-containing
mm39_v1_chr16_+_42727926_42728047	0.13627690489932384	UGCAUAG	ENSMUST00000151244.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20	ENSMUST00000114694.9|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr6_+_108190050_108190065	0.13621362774576026	UGCAUAG	ENSMUST00000032192.9|Itpr1|ENSMUSG00000030102.12|inositol 1,4,5-trisphosphate receptor 1
mm39_v1_chr6_-_38230890_38231089	0.13527367443244878	UGCAUAG	ENSMUST00000117556.8|D630045J12Rik|ENSMUSG00000063455.17|RIKEN cDNA D630045J12 gene	ENSMUST00000169256.5|D630045J12Rik|ENSMUSG00000063455.17|RIKEN cDNA D630045J12 gene
mm39_v1_chr11_+_97306353_97306402	0.13022629593237242	UGCAUAG	ENSMUST00000121799.8|Arhgap23|ENSMUSG00000049807.17|Rho GTPase activating protein 23
mm39_v1_chr10_-_121146940_121147094	0.1296332132831652	UGCAUAG	ENSMUST00000064107.7|Tbc1d30|ENSMUSG00000052302.7|TBC1 domain family, member 30
mm39_v1_chr4_-_155306992_155307049	0.12946742798518443	UGCAUAG	ENSMUST00000084103.10|Ski|ENSMUSG00000029050.16|ski sarcoma viral oncogene homolog (avian)	ENSMUST00000030917.6|Ski|ENSMUSG00000029050.16|ski sarcoma viral oncogene homolog (avian)
mm39_v1_chr10_-_79938487_79938562	0.12910380547834185	UGCAUAG	ENSMUST00000042771.8|Sbno2|ENSMUSG00000035673.11|strawberry notch 2
mm39_v1_chr1_-_64160557_64160650	0.1289128909484405	UGCAUAG	ENSMUST00000055001.10|Klf7|ENSMUSG00000025959.14|Kruppel-like factor 7 (ubiquitous)	ENSMUST00000114086.8|Klf7|ENSMUSG00000025959.14|Kruppel-like factor 7 (ubiquitous)
mm39_v1_chr19_+_41471067_41471128	0.12828837940638782	UGCAUAG	ENSMUST00000067795.13|Lcor|ENSMUSG00000025019.18|ligand dependent nuclear receptor corepressor
mm39_v1_chr3_+_52175757_52175827	0.128108320384818	UGCAUAG	ENSMUST00000053764.7|Foxo1|ENSMUSG00000044167.7|forkhead box O1
mm39_v1_chr12_+_71877838_71877948	0.1261872683251406	UGCAUAG	ENSMUST00000223272.2|Daam1|ENSMUSG00000034574.11|dishevelled associated activator of morphogenesis 1	ENSMUST00000085299.4|Daam1|ENSMUSG00000034574.11|dishevelled associated activator of morphogenesis 1
mm39_v1_chr5_+_89034666_89034684	0.12101085098629202	UGCAUAG	ENSMUST00000148750.8|Slc4a4|ENSMUSG00000060961.17|solute carrier family 4 (anion exchanger), member 4
mm39_v1_chrX_-_13712746_13712826	0.12065852505808058	UGCAUAG	ENSMUST00000115436.9|Cask|ENSMUSG00000031012.18|calcium/calmodulin-dependent serine protein kinase (MAGUK family)	ENSMUST00000033321.11|Cask|ENSMUSG00000031012.18|calcium/calmodulin-dependent serine protein kinase (MAGUK family)	ENSMUST00000115438.10|Cask|ENSMUSG00000031012.18|calcium/calmodulin-dependent serine protein kinase (MAGUK family)
mm39_v1_chr15_-_75620060_75620087	0.11909762641040027	UGCAUAG	ENSMUST00000062002.6|Mafa|ENSMUSG00000047591.6|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)
mm39_v1_chr1_-_151304191_151304225	0.11898269073950006	UGCAUAG	ENSMUST00000064771.12|Swt1|ENSMUSG00000052748.15|SWT1 RNA endoribonuclease homolog (S. cerevisiae)
mm39_v1_chr12_-_67269323_67269354	0.11315813987826857	UGCAUAG	ENSMUST00000037181.16|Mdga2|ENSMUSG00000034912.19|MAM domain containing glycosylphosphatidylinositol anchor 2
mm39_v1_chr8_-_81466126_81466126	0.11205598275917626	UGCAUAG	ENSMUST00000043359.9|Smarca5|ENSMUSG00000031715.15|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
mm39_v1_chr9_-_54408780_54408928	0.11112870340105772	UGCAUAG	ENSMUST00000118600.8|Dmxl2|ENSMUSG00000041268.18|Dmx-like 2	ENSMUST00000118163.8|Dmxl2|ENSMUSG00000041268.18|Dmx-like 2
mm39_v1_chr4_+_32657105_32657167	0.10932731625007108	UGCAUAG	ENSMUST00000071642.11|Mdn1|ENSMUSG00000058006.13|midasin AAA ATPase 1	ENSMUST00000178134.2|Mdn1|ENSMUSG00000058006.13|midasin AAA ATPase 1
mm39_v1_chr11_+_77576981_77577005	0.1074955956689791	UGCAUAG	ENSMUST00000100802.11|Nufip2|ENSMUSG00000037857.17|nuclear fragile X mental retardation protein interacting protein 2	ENSMUST00000181023.2|Nufip2|ENSMUSG00000037857.17|nuclear fragile X mental retardation protein interacting protein 2
mm39_v1_chr2_+_102488985_102489014	0.1074106068706188	UGCAUAG	ENSMUST00000080210.10|Slc1a2|ENSMUSG00000005089.16|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm39_v1_chr7_+_122723365_122723446	0.10649014239240649	UGCAUAG	ENSMUST00000205514.2|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a	ENSMUST00000094053.7|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a
mm39_v1_chr9_+_59485475_59485620	0.1064463744502973	UGCAUAG	ENSMUST00000118549.8|Celf6|ENSMUSG00000032297.12|CUGBP, Elav-like family member 6	ENSMUST00000034840.10|Celf6|ENSMUSG00000032297.12|CUGBP, Elav-like family member 6
mm39_v1_chr5_+_65694552_65694576	0.10374902427320498	UGCAUAG	ENSMUST00000142407.8|Ube2k|ENSMUSG00000029203.17|ubiquitin-conjugating enzyme E2K
mm39_v1_chr17_+_3165232_3165257	0.10147659819971402	UGCAUAG	ENSMUST00000076734.8|Scaf8|ENSMUSG00000046201.10|SR-related CTD-associated factor 8
mm39_v1_chr2_-_33358513_33358582	0.10120936370056564	UGCAUAG	ENSMUST00000113156.2|Zbtb43|ENSMUSG00000026788.14|zinc finger and BTB domain containing 43	ENSMUST00000028125.12|Zbtb43|ENSMUSG00000026788.14|zinc finger and BTB domain containing 43	ENSMUST00000126442.2|Zbtb43|ENSMUSG00000026788.14|zinc finger and BTB domain containing 43
mm39_v1_chr11_+_21041291_21041308	0.10040171929394144	UGCAUAG	ENSMUST00000093290.12|Peli1|ENSMUSG00000020134.14|pellino 1
mm39_v1_chr7_-_66339319_66339351	0.10008679735738213	UGCAUAG	ENSMUST00000124899.8|Asb7|ENSMUSG00000030509.18|ankyrin repeat and SOCS box-containing 7
mm39_v1_chr17_+_44114894_44114932	0.09854085729012221	UGCAUAG	ENSMUST00000044895.13|Rcan2|ENSMUSG00000039601.17|regulator of calcineurin 2
mm39_v1_chr4_+_116578117_116578201	0.09825434445233883	UGCAUAG	ENSMUST00000045542.13|Tesk2|ENSMUSG00000033985.18|testis-specific kinase 2	ENSMUST00000106459.8|Tesk2|ENSMUSG00000033985.18|testis-specific kinase 2
mm39_v1_chr2_-_104324745_104324809	0.09729672169603815	UGCAUAG	ENSMUST00000028600.14|Hipk3|ENSMUSG00000027177.15|homeodomain interacting protein kinase 3
mm39_v1_chr14_+_121272950_121272990	0.0954291712832279	UGCAUAG	ENSMUST00000026635.8|Farp1|ENSMUSG00000025555.15|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
mm39_v1_chr10_+_122514669_122514703	0.09438922385971205	UGCAUAG	ENSMUST00000161487.8|Ppm1h|ENSMUSG00000034613.13|protein phosphatase 1H (PP2C domain containing)	ENSMUST00000067918.12|Ppm1h|ENSMUSG00000034613.13|protein phosphatase 1H (PP2C domain containing)
mm39_v1_chr5_-_147013384_147013401	0.0930734692251909	UGCAUAG	ENSMUST00000016664.8|Lnx2|ENSMUSG00000016520.8|ligand of numb-protein X 2
mm39_v1_chr3_-_19365431_19365486	0.09211208336327768	UGCAUAG	ENSMUST00000099195.10|Pde7a|ENSMUSG00000069094.13|phosphodiesterase 7A
mm39_v1_chr11_-_107022748_107022781	0.09050647550280372	UGCAUAG	ENSMUST00000057892.15|Bptf|ENSMUSG00000040481.18|bromodomain PHD finger transcription factor
mm39_v1_chr10_-_42152684_42152759	0.08866738690411233	UGCAUAG	ENSMUST00000175881.8|Foxo3|ENSMUSG00000048756.12|forkhead box O3	ENSMUST00000056974.4|Foxo3|ENSMUSG00000048756.12|forkhead box O3	ENSMUST00000105502.8|Foxo3|ENSMUSG00000048756.12|forkhead box O3	ENSMUST00000105501.2|Foxo3|ENSMUSG00000048756.12|forkhead box O3
mm39_v1_chr2_+_153187729_153187809	0.08779272466319443	UGCAUAG	ENSMUST00000227428.2|Asxl1|ENSMUSG00000042548.15|ASXL transcriptional regulator 1	ENSMUST00000109790.2|Asxl1|ENSMUSG00000042548.15|ASXL transcriptional regulator 1
mm39_v1_chr4_+_124696336_124696381	0.08755381466685513	UGCAUAG	ENSMUST00000138807.8|Mtf1|ENSMUSG00000028890.14|metal response element binding transcription factor 1	ENSMUST00000030723.3|Mtf1|ENSMUSG00000028890.14|metal response element binding transcription factor 1
mm39_v1_chr12_-_4788415_4788444	0.08252700004573923	UGCAUAG	ENSMUST00000111154.4|Fam228a|ENSMUSG00000079177.5|family with sequence similarity 228, member A
mm39_v1_chr2_-_73360069_73360080	0.08194230971431087	UGCAUAG	ENSMUST00000094681.11|Wipf1|ENSMUSG00000075284.11|WAS/WASL interacting protein family, member 1
mm39_v1_chr6_+_97783975_97784028	0.08186874283068304	UGCAUAG	ENSMUST00000203884.3|Mitf|ENSMUSG00000035158.16|melanogenesis associated transcription factor	ENSMUST00000043637.14|Mitf|ENSMUSG00000035158.16|melanogenesis associated transcription factor
mm39_v1_chr16_-_45544960_45544982	0.08096119261476205	UGCAUAG	ENSMUST00000096057.5|Tagln3|ENSMUSG00000022658.11|transgelin 3
mm39_v1_chrX_+_18028814_18028897	0.08084238413938137	UGCAUAG	ENSMUST00000044484.13|Kdm6a|ENSMUSG00000037369.18|lysine (K)-specific demethylase 6A	ENSMUST00000052368.9|Kdm6a|ENSMUSG00000037369.18|lysine (K)-specific demethylase 6A
mm39_v1_chr18_-_33596792_33596853	0.08048080169493736	UGCAUAG	ENSMUST00000051087.16|Nrep|ENSMUSG00000042834.16|neuronal regeneration related protein
mm39_v1_chr2_-_37333109_37333210	0.07983383340951394	UGCAUAG	ENSMUST00000102789.3|Zbtb26|ENSMUSG00000050714.10|zinc finger and BTB domain containing 26	ENSMUST00000067043.5|Zbtb26|ENSMUSG00000050714.10|zinc finger and BTB domain containing 26	ENSMUST00000112932.2|Zbtb6|ENSMUSG00000066798.4|zinc finger and BTB domain containing 6
mm39_v1_chr9_-_114393406_114393437	0.07862859447866016	UGCAUAG	ENSMUST00000111816.3|Trim71|ENSMUSG00000079259.3|tripartite motif-containing 71
mm39_v1_chr7_+_18946448_18946470	0.07627016503829878	UGCAUAG	ENSMUST00000060225.6|Gpr4|ENSMUSG00000044317.8|G protein-coupled receptor 4
mm39_v1_chr18_-_10182007_10182092	0.07565163191729764	UGCAUAG	ENSMUST00000067947.7|Rock1|ENSMUSG00000024290.10|Rho-associated coiled-coil containing protein kinase 1
mm39_v1_chr11_+_72686990_72687072	0.07545378429724141	UGCAUAG	ENSMUST00000069395.7|Zzef1|ENSMUSG00000055670.15|zinc finger, ZZ-type with EF hand domain 1	ENSMUST00000172220.8|Zzef1|ENSMUSG00000055670.15|zinc finger, ZZ-type with EF hand domain 1
mm39_v1_chrX_+_81992467_81992521	0.07499194829010496	UGCAUAG	ENSMUST00000114000.8|Dmd|ENSMUSG00000045103.20|dystrophin, muscular dystrophy
mm39_v1_chr4_+_53631460_53631574	0.07240182375776988	UGCAUAG	ENSMUST00000132151.8|Fsd1l|ENSMUSG00000054752.17|fibronectin type III and SPRY domain containing 1-like	ENSMUST00000159415.9|Fsd1l|ENSMUSG00000054752.17|fibronectin type III and SPRY domain containing 1-like	ENSMUST00000163067.9|Fsd1l|ENSMUSG00000054752.17|fibronectin type III and SPRY domain containing 1-like
mm39_v1_chr5_+_93241287_93241310	0.07194382202520588	UGCAUAG	ENSMUST00000074733.11|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000201700.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202196.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202308.4|Septin11|ENSMUSG00000058013.12|septin 11
mm39_v1_chr3_+_61269059_61269059	0.07187755721784525	UGCAUAG	ENSMUST00000049064.4|Rap2b|ENSMUSG00000036894.4|RAP2B, member of RAS oncogene family
mm39_v1_chr6_-_55658242_55658255	0.07162694414077737	UGCAUAG	ENSMUST00000044767.10|Neurod6|ENSMUSG00000037984.10|neurogenic differentiation 6
mm39_v1_chr10_-_116984386_116984452	0.07018063020643	UGCAUAG	ENSMUST00000020381.5|Frs2|ENSMUSG00000020170.5|fibroblast growth factor receptor substrate 2
mm39_v1_chr2_+_3119442_3119513	0.06673930151301442	UGCAUAG	ENSMUST00000091505.11|Fam171a1|ENSMUSG00000050530.15|family with sequence similarity 171, member A1
mm39_v1_chr16_-_67417768_67417810	0.06603637426814736	UGCAUAG	ENSMUST00000114292.8|Cadm2|ENSMUSG00000064115.14|cell adhesion molecule 2	ENSMUST00000120898.8|Cadm2|ENSMUSG00000064115.14|cell adhesion molecule 2
mm39_v1_chr13_-_14697770_14697811	0.06565364147805842	UGCAUAG	ENSMUST00000110516.3|Hecw1|ENSMUSG00000021301.10|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1
mm39_v1_chr1_+_105918383_105918450	0.06522567095458591	UGCAUAG	ENSMUST00000119166.8|Zcchc2|ENSMUSG00000038866.16|zinc finger, CCHC domain containing 2
mm39_v1_chr5_-_92110927_92111009	0.0628404212812811	UGCAUAG	ENSMUST00000031345.15|Rchy1|ENSMUSG00000029397.16|ring finger and CHY zinc finger domain containing 1
mm39_v1_chr10_+_62816005_62816041	0.06045487423037034	UGCAUAG	ENSMUST00000131718.8|Rufy2|ENSMUSG00000020070.19|RUN and FYVE domain-containing 2	ENSMUST00000119567.8|Rufy2|ENSMUSG00000020070.19|RUN and FYVE domain-containing 2	ENSMUST00000122231.8|Rufy2|ENSMUSG00000020070.19|RUN and FYVE domain-containing 2
mm39_v1_chr10_+_84753480_84753520	0.06043848507105235	UGCAUAG	ENSMUST00000038523.15|Ric8b|ENSMUSG00000035620.16|RIC8 guanine nucleotide exchange factor B	ENSMUST00000214693.2|Ric8b|ENSMUSG00000035620.16|RIC8 guanine nucleotide exchange factor B	ENSMUST00000095385.5|Ric8b|ENSMUSG00000035620.16|RIC8 guanine nucleotide exchange factor B
mm39_v1_chr2_-_72810782_72810811	0.05873811055341118	UGCAUAG	ENSMUST00000102689.10|Sp3|ENSMUSG00000027109.17|trans-acting transcription factor 3
mm39_v1_chr9_+_74769166_74769203	0.05807823132629933	UGCAUAG	ENSMUST00000056006.11|Onecut1|ENSMUSG00000043013.11|one cut domain, family member 1
mm39_v1_chr1_+_34840785_34840875	0.058022540341544575	UGCAUAG	ENSMUST00000047664.16|Arhgef4|ENSMUSG00000037509.22|Rho guanine nucleotide exchange factor (GEF) 4	ENSMUST00000211073.2|SMIM39|ENSMUSG00000118272.2|novel protein
mm39_v1_chr8_+_117983803_117983846	0.057814901941213526	UGCAUAG	ENSMUST00000166750.9|Cmip|ENSMUSG00000034390.17|c-Maf inducing protein
mm39_v1_chr2_-_79287095_79287102	0.05549637518944054	UGCAUAG	ENSMUST00000041099.5|Neurod1|ENSMUSG00000034701.10|neurogenic differentiation 1
mm39_v1_chr6_-_91784405_91784437	0.05301416542127883	UGCAUAG	ENSMUST00000162300.8|Grip2|ENSMUSG00000030098.16|glutamate receptor interacting protein 2
mm39_v1_chr9_+_74944896_74944983	0.052860081993217324	UGCAUAG	ENSMUST00000168166.8|Arpp19|ENSMUSG00000007656.14|cAMP-regulated phosphoprotein 19	ENSMUST00000169492.8|Arpp19|ENSMUSG00000007656.14|cAMP-regulated phosphoprotein 19	ENSMUST00000170308.8|Arpp19|ENSMUSG00000007656.14|cAMP-regulated phosphoprotein 19
mm39_v1_chr5_-_143166476_143166552	0.051996276490734225	UGCAUAG	ENSMUST00000049861.11|Rbak|ENSMUSG00000061898.11|RB-associated KRAB zinc finger	ENSMUST00000165318.4|Rbak|ENSMUSG00000061898.11|RB-associated KRAB zinc finger
mm39_v1_chr6_-_88022172_88022252	0.05197858689464751	UGCAUAG	ENSMUST00000203674.3|Rab7|ENSMUSG00000079477.10|RAB7, member RAS oncogene family	ENSMUST00000204126.2|Rab7|ENSMUSG00000079477.10|RAB7, member RAS oncogene family	ENSMUST00000113596.8|Rab7|ENSMUSG00000079477.10|RAB7, member RAS oncogene family	ENSMUST00000113600.10|Rab7|ENSMUSG00000079477.10|RAB7, member RAS oncogene family
mm39_v1_chr19_+_30007910_30007928	0.051113214467382595	UGCAUAG	ENSMUST00000025739.14|Uhrf2|ENSMUSG00000024817.14|ubiquitin-like, containing PHD and RING finger domains 2
mm39_v1_chr16_+_27207599_27207619	0.05090339668118427	UGCAUAG	ENSMUST00000239351.2|Ccdc50|ENSMUSG00000038127.16|coiled-coil domain containing 50	ENSMUST00000100026.10|Ccdc50|ENSMUSG00000038127.16|coiled-coil domain containing 50
mm39_v1_chr8_+_57004125_57004197	0.04862761339795613	UGCAUAG	ENSMUST00000110322.9|Fbxo8|ENSMUSG00000038206.14|F-box protein 8	ENSMUST00000040218.13|Fbxo8|ENSMUSG00000038206.14|F-box protein 8	ENSMUST00000210863.2|Fbxo8|ENSMUSG00000038206.14|F-box protein 8
mm39_v1_chr7_+_67602565_67602576	0.044466517070827334	UGCAUAG	ENSMUST00000005671.10|Igf1r|ENSMUSG00000005533.11|insulin-like growth factor I receptor
mm39_v1_chr5_-_69749617_69749683	0.044029559639474324	UGCAUAG	ENSMUST00000173927.8|Gnpda2|ENSMUSG00000029209.16|glucosamine-6-phosphate deaminase 2	ENSMUST00000120789.8|Gnpda2|ENSMUSG00000029209.16|glucosamine-6-phosphate deaminase 2	ENSMUST00000031117.13|Gnpda2|ENSMUSG00000029209.16|glucosamine-6-phosphate deaminase 2
mm39_v1_chr2_+_167380112_167380130	0.04180995623622521	UGCAUAG	ENSMUST00000052631.8|Snai1|ENSMUSG00000042821.8|snail family zinc finger 1
mm39_v1_chr11_-_98220466_98220482	0.03793955900962944	UGCAUAG	ENSMUST00000041685.7|Neurod2|ENSMUSG00000038255.7|neurogenic differentiation 2
mm39_v1_chr13_+_23991010_23991046	0.037658478134164855	UGCAUAG	ENSMUST00000006786.11|Slc17a2|ENSMUSG00000036110.15|solute carrier family 17 (sodium phosphate), member 2	ENSMUST00000099697.3|Slc17a2|ENSMUSG00000036110.15|solute carrier family 17 (sodium phosphate), member 2
mm39_v1_chr11_+_116734104_116734104	0.03576547417994169	UGCAUAG	ENSMUST00000106370.10|Mettl23|ENSMUSG00000090266.11|methyltransferase like 23
mm39_v1_chr11_+_49684984_49685014	0.035737952596588664	UGCAUAG	ENSMUST00000020629.5|Gfpt2|ENSMUSG00000020363.7|glutamine fructose-6-phosphate transaminase 2
mm39_v1_chr17_+_25407352_25407392	0.0345329716562538	UGCAUAG	ENSMUST00000039734.12|Unkl|ENSMUSG00000015127.15|unkempt family like zinc finger
mm39_v1_chr19_+_40883127_40883180	0.03406432767820254	UGCAUAG	ENSMUST00000050092.7|Zfp518a|ENSMUSG00000049164.8|zinc finger protein 518A
mm39_v1_chr15_-_73056713_73056822	0.033764289280833804	UGCAUAG	ENSMUST00000044113.12|Ago2|ENSMUSG00000036698.12|argonaute RISC catalytic subunit 2
mm39_v1_chr10_-_84369831_84369926	0.03240429546234871	UGCAUAG	ENSMUST00000167671.2|Ckap4|ENSMUSG00000046841.6|cytoskeleton-associated protein 4	ENSMUST00000053871.5|Ckap4|ENSMUSG00000046841.6|cytoskeleton-associated protein 4
mm39_v1_chr4_+_155976279_155976351	0.030581866595880997	UGCAUAG	ENSMUST00000105584.10|Acap3|ENSMUSG00000029033.17|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	ENSMUST00000079031.6|Acap3|ENSMUSG00000029033.17|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
mm39_v1_chr19_+_44977512_44977555	0.030014382450605403	UGCAUAG	ENSMUST00000026225.15|Sema4g|ENSMUSG00000025207.17|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
mm39_v1_chr2_+_37342248_37342297	0.029959370748975988	UGCAUAG	ENSMUST00000148470.8|Rabgap1|ENSMUSG00000035437.16|RAB GTPase activating protein 1	ENSMUST00000066055.10|Rabgap1|ENSMUSG00000035437.16|RAB GTPase activating protein 1	ENSMUST00000112920.2|Rabgap1|ENSMUSG00000035437.16|RAB GTPase activating protein 1
mm39_v1_chr4_+_57434247_57434369	0.029206836899535155	UGCAUAG	ENSMUST00000102905.8|Pakap|ENSMUSG00000090053.10|paralemmin A kinase anchor protein
mm39_v1_chr2_+_107120934_107121005	0.028461198605423423	UGCAUAG	ENSMUST00000037012.3|Kcna4|ENSMUSG00000042604.6|potassium voltage-gated channel, shaker-related subfamily, member 4
mm39_v1_chr16_-_60425608_60425616	0.025801432042953293	UGCAUAG	ENSMUST00000068860.13|Epha6|ENSMUSG00000055540.16|Eph receptor A6
mm39_v1_chr5_-_49682150_49682249	0.024793667213164845	UGCAUAG	ENSMUST00000087395.11|Kcnip4|ENSMUSG00000029088.17|Kv channel interacting protein 4
mm39_v1_chr5_+_34731008_34731081	0.023017722818821317	UGCAUAG	ENSMUST00000114338.9|Add1|ENSMUSG00000029106.15|adducin 1 (alpha)
mm39_v1_chr4_+_106768662_106768708	0.022333891101480534	UGCAUAG	ENSMUST00000030367.15|Ssbp3|ENSMUSG00000061887.15|single-stranded DNA binding protein 3	ENSMUST00000149926.8|Ssbp3|ENSMUSG00000061887.15|single-stranded DNA binding protein 3
mm39_v1_chr3_+_55149947_55149976	0.021287488416440768	UGCAUAG	ENSMUST00000167204.8|Dclk1|ENSMUSG00000027797.16|doublecortin-like kinase 1	ENSMUST00000054237.14|Dclk1|ENSMUSG00000027797.16|doublecortin-like kinase 1
mm39_v1_chr11_+_85202058_85202113	0.021055527340572575	UGCAUAG	ENSMUST00000020835.16|Ppm1d|ENSMUSG00000020525.18|protein phosphatase 1D magnesium-dependent, delta isoform
mm39_v1_chr4_+_11156411_11156453	0.020724653768619764	UGCAUAG	ENSMUST00000029865.4|Trp53inp1|ENSMUSG00000028211.12|transformation related protein 53 inducible nuclear protein 1
mm39_v1_chr10_-_86334700_86334730	0.020178246301824215	UGCAUAG	ENSMUST00000120638.8|Syn3|ENSMUSG00000059602.15|synapsin III
mm39_v1_chr8_+_13209141_13209161	0.01999518425966239	UGCAUAG	ENSMUST00000033824.8|Lamp1|ENSMUSG00000031447.8|lysosomal-associated membrane protein 1
mm39_v1_chr11_-_5211558_5211590	0.019566651063163847	UGCAUAG	ENSMUST00000020662.15|Kremen1|ENSMUSG00000020393.17|kringle containing transmembrane protein 1
mm39_v1_chr14_+_67470884_67471035	0.01939756846251605	UGCAUAG	ENSMUST00000176161.8|Ebf2|ENSMUSG00000022053.14|early B cell factor 2
mm39_v1_chr6_-_32565127_32565148	0.0193068776367848	UGCAUAG	ENSMUST00000115096.4|Plxna4|ENSMUSG00000029765.13|plexin A4
mm39_v1_chr19_+_3817396_3817523	0.018835938643330732	UGCAUAG	ENSMUST00000052699.13|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113974.11|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113972.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113973.8|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113977.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113968.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B
mm39_v1_chr16_+_33201164_33201206	0.01867462219615853	UGCAUAG	ENSMUST00000165418.9|Zfp148|ENSMUSG00000022811.18|zinc finger protein 148
mm39_v1_chr2_+_21372338_21372353	0.01831297185836004	UGCAUAG	ENSMUST00000055946.8|Gpr158|ENSMUSG00000045967.12|G protein-coupled receptor 158
mm39_v1_chr11_-_88609048_88609136	0.017442915345807348	UGCAUAG	ENSMUST00000107909.8|Msi2|ENSMUSG00000069769.14|musashi RNA-binding protein 2
mm39_v1_chr5_-_42001571_42001673	0.01742913056809758	UGCAUAG	ENSMUST00000050556.11|Bod1l|ENSMUSG00000061755.11|biorientation of chromosomes in cell division 1-like	ENSMUST00000202908.2|Bod1l|ENSMUSG00000061755.11|biorientation of chromosomes in cell division 1-like
mm39_v1_chrX_+_67722147_67722159	0.014692457656544434	UGCAUAG	ENSMUST00000088546.12|Fmr1|ENSMUSG00000000838.18|FMRP translational regulator 1
mm39_v1_chr7_-_46658144_46658169	0.013618984451622521	UGCAUAG	ENSMUST00000061639.10|Spty2d1|ENSMUSG00000049516.10|SPT2 chromatin protein domain containing 1
mm39_v1_chr6_-_60806810_60806839	0.013529160609164231	UGCAUAG	ENSMUST00000163779.8|Snca|ENSMUSG00000025889.14|synuclein, alpha
mm39_v1_chr15_+_6737853_6737883	0.013478544493591838	UGCAUAG	ENSMUST00000061656.8|Rictor|ENSMUSG00000050310.10|RPTOR independent companion of MTOR, complex 2
mm39_v1_chr6_+_145156860_145156933	0.013146871643933014	UGCAUAG	ENSMUST00000111725.8|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111726.10|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000039729.5|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111723.8|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111724.8|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111721.2|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111719.2|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1
mm39_v1_chr1_-_119349969_119350021	0.012263764740324338	UGCAUAG	ENSMUST00000038765.6|Inhbb|ENSMUSG00000037035.6|inhibin beta-B
mm39_v1_chr1_-_13062873_13062892	0.012135084323986392	UGCAUAG	ENSMUST00000188454.7|Slco5a1|ENSMUSG00000025938.17|solute carrier organic anion transporter family, member 5A1
mm39_v1_chr12_+_29988035_29988058	0.011916272481844292	UGCAUAG	ENSMUST00000122328.8|Pxdn|ENSMUSG00000020674.18|peroxidasin	ENSMUST00000118321.3|Pxdn|ENSMUSG00000020674.18|peroxidasin
mm39_v1_chr19_-_45804446_45804515	0.011237281195406724	UGCAUAG	ENSMUST00000079431.10|Kcnip2|ENSMUSG00000025221.17|Kv channel-interacting protein 2	ENSMUST00000026247.13|Kcnip2|ENSMUSG00000025221.17|Kv channel-interacting protein 2	ENSMUST00000162528.9|Kcnip2|ENSMUSG00000025221.17|Kv channel-interacting protein 2
mm39_v1_chr10_-_95252712_95252723	0.010239446200252715	UGCAUAG	ENSMUST00000020215.16|Socs2|ENSMUSG00000020027.19|suppressor of cytokine signaling 2
mm39_v1_chr5_+_27109679_27109709	0.009841534228929045	UGCAUAG	ENSMUST00000120555.8|Dpp6|ENSMUSG00000061576.16|dipeptidylpeptidase 6
mm39_v1_chr10_-_122912272_122912410	0.009825287283782205	UGCAUAG	ENSMUST00000219203.2|Mon2|ENSMUSG00000034602.16|MON2 homolog, regulator of endosome to Golgi trafficking	ENSMUST00000073792.11|Mon2|ENSMUSG00000034602.16|MON2 homolog, regulator of endosome to Golgi trafficking
mm39_v1_chr3_-_85653573_85653573	0.009075888916255203	UGCAUAG	ENSMUST00000118408.8|Fam160a1|ENSMUSG00000051000.18|family with sequence similarity 160, member A1
mm39_v1_chr13_+_19132375_19132587	0.008914682924703689	UGCAUAG	ENSMUST00000239207.2|Amph|ENSMUSG00000021314.14|amphiphysin	ENSMUST00000003345.10|Amph|ENSMUSG00000021314.14|amphiphysin	ENSMUST00000200466.5|Amph|ENSMUSG00000021314.14|amphiphysin
mm39_v1_chr11_-_47270201_47270349	0.0076371652659513465	UGCAUAG	ENSMUST00000077221.6|Sgcd|ENSMUSG00000020354.16|sarcoglycan, delta (dystrophin-associated glycoprotein)
mm39_v1_chrX_-_140508177_140508259	0.007575332613161936	UGCAUAG	ENSMUST00000067841.8|Irs4|ENSMUSG00000054667.8|insulin receptor substrate 4
mm39_v1_chr18_+_51250748_51250822	0.00669227344208137	UGCAUAG	ENSMUST00000116639.4|Prr16|ENSMUSG00000073565.6|proline rich 16
mm39_v1_chr10_-_30718760_30718797	0.005131503225995048	UGCAUAG	ENSMUST00000019924.9|Hey2|ENSMUSG00000019789.10|hairy/enhancer-of-split related with YRPW motif 2
mm39_v1_chr4_+_31964082_31964263	0.004425540547965968	UGCAUAG	ENSMUST00000037607.11|Map3k7|ENSMUSG00000028284.14|mitogen-activated protein kinase kinase kinase 7	ENSMUST00000080933.13|Map3k7|ENSMUSG00000028284.14|mitogen-activated protein kinase kinase kinase 7	ENSMUST00000108183.8|Map3k7|ENSMUSG00000028284.14|mitogen-activated protein kinase kinase kinase 7	ENSMUST00000108184.3|Map3k7|ENSMUSG00000028284.14|mitogen-activated protein kinase kinase kinase 7
mm39_v1_chr4_-_120604445_120604602	0.0027787278213827387	UGCAUAG	ENSMUST00000030376.8|Kcnq4|ENSMUSG00000028631.8|potassium voltage-gated channel, subfamily Q, member 4
mm39_v1_chr8_+_14145848_14145931	0.002442502531576981	UGCAUAG	ENSMUST00000152652.8|Dlgap2|ENSMUSG00000047495.16|DLG associated protein 2	ENSMUST00000133298.8|Dlgap2|ENSMUSG00000047495.16|DLG associated protein 2
mm39_v1_chr18_-_21433186_21433226	0.0012931118442413832	UGCAUAG	ENSMUST00000049260.7|Garem1|ENSMUSG00000042680.9|GRB2 associated regulator of MAPK1 subtype 1
mm39_v1_chr5_+_30868908_30868932	0.000983824723805789	UGCAUAG	ENSMUST00000114729.8|Dpysl5|ENSMUSG00000029168.15|dihydropyrimidinase-like 5
mm39_v1_chr2_+_106523532_106523624	0.0008099897756584485	UGCAUAG	ENSMUST00000111063.8|Mpped2|ENSMUSG00000016386.16|metallophosphoesterase domain containing 2
mm39_v1_chr4_+_13743424_13743478	0.0005161920013671759	UGCAUAG	ENSMUST00000006761.10|Runx1t1|ENSMUSG00000006586.16|RUNX1 translocation partner 1
mm39_v1_chr1_+_5658716_5658780	0.000261132459140939	UGCAUAG	ENSMUST00000160777.8|Oprk1|ENSMUSG00000025905.15|opioid receptor, kappa 1	ENSMUST00000239100.2|Oprk1|ENSMUSG00000025905.15|opioid receptor, kappa 1	ENSMUST00000027038.11|Oprk1|ENSMUSG00000025905.15|opioid receptor, kappa 1
mm39_v1_chr9_-_86577940_86578012	8.836278547466599e-05	UGCAUAG	ENSMUST00000034989.15|Me1|ENSMUSG00000032418.16|malic enzyme 1, NADP(+)-dependent, cytosolic
