mm39_v1_chr6_-_38853097_38853167	0.10825029684564064	UGCAUUG	ENSMUST00000161779.8|Hipk2|ENSMUSG00000061436.16|homeodomain interacting protein kinase 2
mm39_v1_chrM_+_3906_3942	0.07535900930021375	UGCAUUG	ENSMUST00000082396.1|mt-Nd2|ENSMUSG00000064345.1|mitochondrially encoded NADH dehydrogenase 2
mm39_v1_chr14_-_98406977_98407031	0.07471815536117546	UGCAUUG	ENSMUST00000071533.13|Dach1|ENSMUSG00000055639.17|dachshund family transcription factor 1	ENSMUST00000069334.8|Dach1|ENSMUSG00000055639.17|dachshund family transcription factor 1
mm39_v1_chr8_-_85526653_85526912	0.06612714964319381	UGCAUUG	ENSMUST00000126806.2|Nfix|ENSMUSG00000001911.17|nuclear factor I/X	ENSMUST00000076715.13|Nfix|ENSMUSG00000001911.17|nuclear factor I/X
mm39_v1_chr9_-_43151179_43151208	0.06471353519526851	UGCAUUG	ENSMUST00000034512.7|Oaf|ENSMUSG00000032014.7|out at first homolog
mm39_v1_chr6_-_149003171_149003184	0.06201683858008747	UGCAUUG	ENSMUST00000111557.8|Dennd5b|ENSMUSG00000030313.16|DENN/MADD domain containing 5B
mm39_v1_chr4_-_53159885_53159900	0.05809929089163182	UGCAUUG	ENSMUST00000030010.4|Abca1|ENSMUSG00000015243.5|ATP-binding cassette, sub-family A (ABC1), member 1
mm39_v1_chrX_+_158410229_158410294	0.057994197081563295	UGCAUUG	ENSMUST00000112456.9|Sh3kbp1|ENSMUSG00000040990.18|SH3-domain kinase binding protein 1
mm39_v1_chr5_+_23639432_23639478	0.05469772931672043	UGCAUUG	ENSMUST00000094962.9|Kmt2e|ENSMUSG00000029004.16|lysine (K)-specific methyltransferase 2E	ENSMUST00000115128.8|Kmt2e|ENSMUSG00000029004.16|lysine (K)-specific methyltransferase 2E
mm39_v1_chr7_+_46700349_46700369	0.054552746864160666	UGCAUUG	ENSMUST00000010451.8|Tmem86a|ENSMUSG00000010307.8|transmembrane protein 86A
mm39_v1_chr5_-_129030367_129030550	0.05367816732547123	UGCAUUG	ENSMUST00000111346.6|Rimbp2|ENSMUSG00000029420.15|RIMS binding protein 2	ENSMUST00000200470.5|Rimbp2|ENSMUSG00000029420.15|RIMS binding protein 2
mm39_v1_chr16_-_76170714_76170741	0.05157679683497666	UGCAUUG	ENSMUST00000231585.2|Nrip1|ENSMUSG00000048490.15|nuclear receptor interacting protein 1	ENSMUST00000121927.8|Nrip1|ENSMUSG00000048490.15|nuclear receptor interacting protein 1
mm39_v1_chr6_-_28831746_28831746	0.05059780696973692	UGCAUUG	ENSMUST00000062304.7|Lrrc4|ENSMUSG00000049939.7|leucine rich repeat containing 4
mm39_v1_chr2_+_28095660_28095684	0.042742192305540806	UGCAUUG	ENSMUST00000102879.4|Olfm1|ENSMUSG00000026833.19|olfactomedin 1	ENSMUST00000028177.11|Olfm1|ENSMUSG00000026833.19|olfactomedin 1
mm39_v1_chr13_-_104057016_104057075	0.041788316890056215	UGCAUUG	ENSMUST00000022222.12|Erbin|ENSMUSG00000021709.15|Erbb2 interacting protein
mm39_v1_chr1_-_123973223_123973308	0.04001570216891932	UGCAUUG	ENSMUST00000112606.8|Dpp10|ENSMUSG00000036815.18|dipeptidylpeptidase 10
mm39_v1_chr5_+_43390513_43390580	0.03864146546592062	UGCAUUG	ENSMUST00000166713.9|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2	ENSMUST00000169035.8|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2	ENSMUST00000114065.9|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2
mm39_v1_chr18_-_15196612_15196675	0.03774375459172275	UGCAUUG	ENSMUST00000168989.9|Kctd1|ENSMUSG00000036225.16|potassium channel tetramerisation domain containing 1
mm39_v1_chr1_+_118555668_118555686	0.03686483515285875	UGCAUUG	ENSMUST00000027629.10|Tfcp2l1|ENSMUSG00000026380.11|transcription factor CP2-like 1
mm39_v1_chr6_-_99243455_99243501	0.035752104714623145	UGCAUUG	ENSMUST00000113326.9|Foxp1|ENSMUSG00000030067.18|forkhead box P1
mm39_v1_chr6_+_65648574_65648602	0.03507363101144307	UGCAUUG	ENSMUST00000054351.6|Ndnf|ENSMUSG00000049001.6|neuron-derived neurotrophic factor
mm39_v1_chr14_-_30075424_30075492	0.034240045773691094	UGCAUUG	ENSMUST00000224198.3|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit	ENSMUST00000238675.2|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit	ENSMUST00000112249.10|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit	ENSMUST00000224785.3|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm39_v1_chr8_-_81466126_81466126	0.0326864987751571	UGCAUUG	ENSMUST00000043359.9|Smarca5|ENSMUSG00000031715.15|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
mm39_v1_chr12_-_46865709_46865720	0.030964621599663497	UGCAUUG	ENSMUST00000021438.8|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr5_+_111027654_111027708	0.028719288840469308	UGCAUUG	ENSMUST00000040111.10|Ttc28|ENSMUSG00000033209.18|tetratricopeptide repeat domain 28	ENSMUST00000156290.9|Ttc28|ENSMUSG00000033209.18|tetratricopeptide repeat domain 28
mm39_v1_chr9_+_62248611_62248672	0.028426407014283648	UGCAUUG	ENSMUST00000085519.13|Anp32a|ENSMUSG00000032249.15|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
mm39_v1_chr8_-_11058458_11058458	0.028384179256453597	UGCAUUG	ENSMUST00000040514.8|Irs2|ENSMUSG00000038894.8|insulin receptor substrate 2
mm39_v1_chr2_+_165834546_165834563	0.02799232702602144	UGCAUUG	ENSMUST00000109252.8|Ncoa3|ENSMUSG00000027678.18|nuclear receptor coactivator 3	ENSMUST00000088095.6|Ncoa3|ENSMUSG00000027678.18|nuclear receptor coactivator 3
mm39_v1_chr12_-_72117865_72117899	0.026984683968726872	UGCAUUG	ENSMUST00000050649.6|Gpr135|ENSMUSG00000043398.6|G protein-coupled receptor 135
mm39_v1_chr10_+_80330669_80330714	0.025619616317040583	UGCAUUG	ENSMUST00000051773.9|Onecut3|ENSMUSG00000045518.9|one cut domain, family member 3
mm39_v1_chr19_-_7083094_7083094	0.025551692409302385	UGCAUUG	ENSMUST00000113383.4|Flrt1|ENSMUSG00000047787.9|fibronectin leucine rich transmembrane protein 1
mm39_v1_chr3_-_101017594_101017652	0.02537033163282599	UGCAUUG	ENSMUST00000102694.4|Ptgfrn|ENSMUSG00000027864.10|prostaglandin F2 receptor negative regulator
mm39_v1_chr11_-_18968979_18968990	0.025276403157547624	UGCAUUG	ENSMUST00000144988.8|Meis1|ENSMUSG00000020160.19|Meis homeobox 1
mm39_v1_chr9_+_53448322_53448374	0.024836391441175495	UGCAUUG	ENSMUST00000035850.8|Npat|ENSMUSG00000033054.8|nuclear protein in the AT region
mm39_v1_chr19_-_59334172_59334277	0.023783837782044258	UGCAUUG	ENSMUST00000099274.4|Pdzd8|ENSMUSG00000074746.4|PDZ domain containing 8
mm39_v1_chr7_+_49559859_49559894	0.02361078985298212	UGCAUUG	ENSMUST00000056442.12|Slc6a5|ENSMUSG00000039728.16|solute carrier family 6 (neurotransmitter transporter, glycine), member 5
mm39_v1_chr18_+_75500600_75500632	0.023519394525488724	UGCAUUG	ENSMUST00000026999.10|Smad7|ENSMUSG00000025880.12|SMAD family member 7
mm39_v1_chr1_+_136552639_136552688	0.022922813078608238	UGCAUUG	ENSMUST00000047734.15|Zfp281|ENSMUSG00000041483.15|zinc finger protein 281	ENSMUST00000112046.2|Zfp281|ENSMUSG00000041483.15|zinc finger protein 281
mm39_v1_chr1_+_39940043_39940123	0.02196835649131859	UGCAUUG	ENSMUST00000168431.7|Map4k4|ENSMUSG00000026074.16|mitogen-activated protein kinase kinase kinase kinase 4	ENSMUST00000163854.9|Map4k4|ENSMUSG00000026074.16|mitogen-activated protein kinase kinase kinase kinase 4
mm39_v1_chr6_+_4903299_4903347	0.021537630522000424	UGCAUUG	ENSMUST00000035813.9|Ppp1r9a|ENSMUSG00000032827.16|protein phosphatase 1, regulatory subunit 9A
mm39_v1_chr2_-_33321306_33321359	0.01997403708712641	UGCAUUG	ENSMUST00000113158.8|Zbtb34|ENSMUSG00000068966.11|zinc finger and BTB domain containing 34
mm39_v1_chr4_-_59549314_59549364	0.019834032466165774	UGCAUUG	ENSMUST00000148331.9|Ptbp3|ENSMUSG00000028382.16|polypyrimidine tract binding protein 3	ENSMUST00000030076.12|Ptbp3|ENSMUSG00000028382.16|polypyrimidine tract binding protein 3
mm39_v1_chr18_-_12369351_12369463	0.019552017187787304	UGCAUUG	ENSMUST00000025279.6|Npc1|ENSMUSG00000024413.15|NPC intracellular cholesterol transporter 1
mm39_v1_chr10_-_5872386_5872405	0.0192332817468662	UGCAUUG	ENSMUST00000131996.8|Rgs17|ENSMUSG00000019775.18|regulator of G-protein signaling 17	ENSMUST00000064225.14|Rgs17|ENSMUSG00000019775.18|regulator of G-protein signaling 17
mm39_v1_chr1_+_74275648_74275681	0.01884585469069417	UGCAUUG	ENSMUST00000113820.9|Arpc2|ENSMUSG00000006304.15|actin related protein 2/3 complex, subunit 2	ENSMUST00000006467.14|Arpc2|ENSMUSG00000006304.15|actin related protein 2/3 complex, subunit 2
mm39_v1_chrX_-_107877909_107877987	0.018615901964166716	UGCAUUG	ENSMUST00000101283.4|Brwd3|ENSMUSG00000063663.12|bromodomain and WD repeat domain containing 3	ENSMUST00000150434.8|Brwd3|ENSMUSG00000063663.12|bromodomain and WD repeat domain containing 3
mm39_v1_chr1_-_13442658_13442681	0.017205227451625595	UGCAUUG	ENSMUST00000081713.11|Ncoa2|ENSMUSG00000005886.15|nuclear receptor coactivator 2
mm39_v1_chr13_-_105191403_105191438	0.01657024788925002	UGCAUUG	ENSMUST00000063551.7|Rgs7bp|ENSMUSG00000021719.10|regulator of G-protein signalling 7 binding protein
mm39_v1_chr3_+_157653051_157653148	0.016440614637377365	UGCAUUG	ENSMUST00000164582.4|Ankrd13c|ENSMUSG00000039988.15|ankyrin repeat domain 13c	ENSMUST00000040787.13|Ankrd13c|ENSMUSG00000039988.15|ankyrin repeat domain 13c
mm39_v1_chr5_+_97145533_97145625	0.016350039071076728	UGCAUUG	ENSMUST00000112974.6|Bmp2k|ENSMUSG00000034663.14|BMP2 inducible kinase	ENSMUST00000035635.10|Bmp2k|ENSMUSG00000034663.14|BMP2 inducible kinase
mm39_v1_chr16_-_67417768_67417810	0.01629003012614863	UGCAUUG	ENSMUST00000114292.8|Cadm2|ENSMUSG00000064115.14|cell adhesion molecule 2	ENSMUST00000120898.8|Cadm2|ENSMUSG00000064115.14|cell adhesion molecule 2
mm39_v1_chr6_-_13677928_13677974	0.016100171044505993	UGCAUUG	ENSMUST00000203078.2|Bmt2|ENSMUSG00000042742.8|base methyltransferase of 25S rRNA 2	ENSMUST00000045235.8|Bmt2|ENSMUSG00000042742.8|base methyltransferase of 25S rRNA 2
mm39_v1_chr11_-_86435579_86435631	0.0158810764942405	UGCAUUG	ENSMUST00000138810.3|Rps6kb1|ENSMUSG00000020516.16|ribosomal protein S6 kinase, polypeptide 1	ENSMUST00000058286.9|Rps6kb1|ENSMUSG00000020516.16|ribosomal protein S6 kinase, polypeptide 1	ENSMUST00000154617.8|Rps6kb1|ENSMUSG00000020516.16|ribosomal protein S6 kinase, polypeptide 1
mm39_v1_chr4_-_120682859_120682904	0.01454232939947623	UGCAUUG	ENSMUST00000134979.8|Nfyc|ENSMUSG00000032897.18|nuclear transcription factor-Y gamma	ENSMUST00000136236.8|Nfyc|ENSMUSG00000032897.18|nuclear transcription factor-Y gamma	ENSMUST00000043429.12|Nfyc|ENSMUSG00000032897.18|nuclear transcription factor-Y gamma	ENSMUST00000145658.2|Nfyc|ENSMUSG00000032897.18|nuclear transcription factor-Y gamma
mm39_v1_chr15_+_58805605_58805685	0.014470911225189276	UGCAUUG	ENSMUST00000022980.5|Ndufb9|ENSMUSG00000022354.5|NADH:ubiquinone oxidoreductase subunit B9
mm39_v1_chr2_-_154734824_154734855	0.014400475972243807	UGCAUUG	ENSMUST00000099173.11|Eif2s2|ENSMUSG00000074656.13|eukaryotic translation initiation factor 2, subunit 2 (beta)
mm39_v1_chr7_+_123582021_123582092	0.013303345104307468	UGCAUUG	ENSMUST00000106437.2|Hs3st4|ENSMUSG00000078591.2|heparan sulfate (glucosamine) 3-O-sulfotransferase 4
mm39_v1_chr12_-_80159768_80159793	0.013302616284820186	UGCAUUG	ENSMUST00000219642.2|Zfp36l1|ENSMUSG00000021127.8|zinc finger protein 36, C3H type-like 1	ENSMUST00000165114.2|Zfp36l1|ENSMUSG00000021127.8|zinc finger protein 36, C3H type-like 1	ENSMUST00000218835.2|Zfp36l1|ENSMUSG00000021127.8|zinc finger protein 36, C3H type-like 1	ENSMUST00000021552.3|Zfp36l1|ENSMUSG00000021127.8|zinc finger protein 36, C3H type-like 1
mm39_v1_chr11_-_29975916_29976033	0.013290313001856577	UGCAUUG	ENSMUST00000058902.6|Eml6|ENSMUSG00000044072.15|echinoderm microtubule associated protein like 6
mm39_v1_chr2_+_76236870_76236936	0.012964603863099187	UGCAUUG	ENSMUST00000077972.11|Osbpl6|ENSMUSG00000042359.19|oxysterol binding protein-like 6	ENSMUST00000111929.8|Osbpl6|ENSMUSG00000042359.19|oxysterol binding protein-like 6	ENSMUST00000111930.9|Osbpl6|ENSMUSG00000042359.19|oxysterol binding protein-like 6
mm39_v1_chr4_-_155306992_155307049	0.012744078901230015	UGCAUUG	ENSMUST00000084103.10|Ski|ENSMUSG00000029050.16|ski sarcoma viral oncogene homolog (avian)	ENSMUST00000030917.6|Ski|ENSMUSG00000029050.16|ski sarcoma viral oncogene homolog (avian)
mm39_v1_chr18_-_64794338_64794338	0.012639130896946932	UGCAUUG	ENSMUST00000025482.10|Atp8b1|ENSMUSG00000039529.10|ATPase, class I, type 8B, member 1
mm39_v1_chr3_+_96634974_96635060	0.012560270046667474	UGCAUUG	ENSMUST00000029740.14|Rnf115|ENSMUSG00000028098.14|ring finger protein 115
mm39_v1_chr8_+_106587212_106587240	0.012558597354642032	UGCAUUG	ENSMUST00000008594.9|Nutf2|ENSMUSG00000008450.9|nuclear transport factor 2
mm39_v1_chr5_-_121974913_121974927	0.012398554308870262	UGCAUUG	ENSMUST00000040308.14|Sh2b3|ENSMUSG00000042594.17|SH2B adaptor protein 3	ENSMUST00000086310.8|Sh2b3|ENSMUSG00000042594.17|SH2B adaptor protein 3
mm39_v1_chr9_+_62765362_62765420	0.012337239012296653	UGCAUUG	ENSMUST00000213643.2|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000034777.14|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000163820.3|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000215870.2|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000214633.2|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000215968.2|Calml4|ENSMUSG00000032246.15|calmodulin-like 4
mm39_v1_chr2_-_181101158_181101232	0.012132832040342037	UGCAUUG	ENSMUST00000155535.2|Zbtb46|ENSMUSG00000027583.14|zinc finger and BTB domain containing 46	ENSMUST00000029106.13|Zbtb46|ENSMUSG00000027583.14|zinc finger and BTB domain containing 46	ENSMUST00000087409.10|Zbtb46|ENSMUSG00000027583.14|zinc finger and BTB domain containing 46
mm39_v1_chrX_+_74460234_74460256	0.012127368949474289	UGCAUUG	ENSMUST00000033544.14|Brcc3|ENSMUSG00000031201.18|BRCA1/BRCA2-containing complex, subunit 3
mm39_v1_chr11_+_44508137_44508169	0.012124275902028187	UGCAUUG	ENSMUST00000109268.2|Ebf1|ENSMUSG00000057098.15|early B cell factor 1	ENSMUST00000101326.10|Ebf1|ENSMUSG00000057098.15|early B cell factor 1	ENSMUST00000081265.12|Ebf1|ENSMUSG00000057098.15|early B cell factor 1
mm39_v1_chr7_+_78922947_78922973	0.012001078123162512	UGCAUUG	ENSMUST00000037315.13|Abhd2|ENSMUSG00000039202.13|abhydrolase domain containing 2
mm39_v1_chr17_-_66384017_66384086	0.011747733667877666	UGCAUUG	ENSMUST00000150766.2|Ankrd12|ENSMUSG00000034647.16|ankyrin repeat domain 12	ENSMUST00000038116.13|Ankrd12|ENSMUSG00000034647.16|ankyrin repeat domain 12
mm39_v1_chr14_+_21549798_21549853	0.011677598113068746	UGCAUUG	ENSMUST00000182855.8|Kat6b|ENSMUSG00000021767.20|K(lysine) acetyltransferase 6B	ENSMUST00000182405.9|Kat6b|ENSMUSG00000021767.20|K(lysine) acetyltransferase 6B	ENSMUST00000069648.14|Kat6b|ENSMUSG00000021767.20|K(lysine) acetyltransferase 6B
mm39_v1_chr2_+_93472657_93472733	0.011024533109076732	UGCAUUG	ENSMUST00000042078.10|Alx4|ENSMUSG00000040310.13|aristaless-like homeobox 4	ENSMUST00000111254.2|Alx4|ENSMUSG00000040310.13|aristaless-like homeobox 4
mm39_v1_chr13_-_103911092_103911139	0.010866199104726148	UGCAUUG	ENSMUST00000074616.7|Srek1|ENSMUSG00000032621.9|splicing regulatory glutamine/lysine-rich protein 1
mm39_v1_chr12_+_38830081_38830116	0.01066954899152093	UGCAUUG	ENSMUST00000095767.11|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr19_+_29499671_29499682	0.010261699002211664	UGCAUUG	ENSMUST00000043610.13|Ric1|ENSMUSG00000038658.16|RAB6A GEF complex partner 1
mm39_v1_chr1_-_77491683_77491779	0.009805961350543534	UGCAUUG	ENSMUST00000186930.2|Epha4|ENSMUSG00000026235.15|Eph receptor A4	ENSMUST00000027451.13|Epha4|ENSMUSG00000026235.15|Eph receptor A4	ENSMUST00000188797.7|Epha4|ENSMUSG00000026235.15|Eph receptor A4
mm39_v1_chr3_+_101917455_101917487	0.00915966997917572	UGCAUUG	ENSMUST00000066187.6|Nhlh2|ENSMUSG00000048540.9|nescient helix loop helix 2	ENSMUST00000198675.2|Nhlh2|ENSMUSG00000048540.9|nescient helix loop helix 2
mm39_v1_chr1_-_176102840_176102875	0.008146509095673535	UGCAUUG	ENSMUST00000111166.2|Pld5|ENSMUSG00000055214.16|phospholipase D family, member 5	ENSMUST00000065967.14|Pld5|ENSMUSG00000055214.16|phospholipase D family, member 5
mm39_v1_chr4_+_17853452_17853474	0.008143712095304305	UGCAUUG	ENSMUST00000029881.10|Mmp16|ENSMUSG00000028226.16|matrix metallopeptidase 16
mm39_v1_chr2_+_96148418_96148561	0.007935059565246825	UGCAUUG	ENSMUST00000135431.8|Lrrc4c|ENSMUSG00000050587.15|leucine rich repeat containing 4C	ENSMUST00000162807.9|Lrrc4c|ENSMUSG00000050587.15|leucine rich repeat containing 4C
mm39_v1_chr3_+_146558114_146558193	0.00787261992061242	UGCAUUG	ENSMUST00000170055.8|Ttll7|ENSMUSG00000036745.16|tubulin tyrosine ligase-like family, member 7	ENSMUST00000037942.11|Ttll7|ENSMUSG00000036745.16|tubulin tyrosine ligase-like family, member 7
mm39_v1_chr1_-_57011595_57011661	0.007818156530951203	UGCAUUG	ENSMUST00000042857.14|Satb2|ENSMUSG00000038331.16|special AT-rich sequence binding protein 2
mm39_v1_chr14_+_46997984_46998003	0.007459698197283102	UGCAUUG	ENSMUST00000067426.6|Cdkn3|ENSMUSG00000037628.11|cyclin-dependent kinase inhibitor 3
mm39_v1_chr17_+_26934617_26934698	0.0068922354405330935	UGCAUUG	ENSMUST00000062519.14|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000144221.2|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000142539.8|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000151681.2|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor
mm39_v1_chr13_+_55782814_55782864	0.00679096926181526	UGCAUUG	ENSMUST00000172272.8|Ddx46|ENSMUSG00000021500.18|DEAD box helicase 46	ENSMUST00000099479.4|Ddx46|ENSMUSG00000021500.18|DEAD box helicase 46	ENSMUST00000223736.2|Ddx46|ENSMUSG00000021500.18|DEAD box helicase 46
mm39_v1_chr10_-_67384898_67384924	0.00661889986660302	UGCAUUG	ENSMUST00000075686.7|Ado|ENSMUSG00000057134.7|2-aminoethanethiol (cysteamine) dioxygenase
mm39_v1_chr2_+_107120934_107121005	0.006380592197923398	UGCAUUG	ENSMUST00000037012.3|Kcna4|ENSMUSG00000042604.6|potassium voltage-gated channel, shaker-related subfamily, member 4
mm39_v1_chr18_-_9450097_9450174	0.006338095316501509	UGCAUUG	ENSMUST00000053917.6|Ccny|ENSMUSG00000024286.9|cyclin Y
mm39_v1_chr9_+_72439496_72439553	0.006156103967885629	UGCAUUG	ENSMUST00000163401.9|Rfx7|ENSMUSG00000037674.16|regulatory factor X, 7	ENSMUST00000093820.10|Rfx7|ENSMUSG00000037674.16|regulatory factor X, 7
mm39_v1_chr5_-_102217770_102217807	0.006066854752224271	UGCAUUG	ENSMUST00000053177.14|Wdfy3|ENSMUSG00000043940.16|WD repeat and FYVE domain containing 3	ENSMUST00000174698.2|Wdfy3|ENSMUSG00000043940.16|WD repeat and FYVE domain containing 3
mm39_v1_chr3_+_58322119_58322161	0.006000573260894248	UGCAUUG	ENSMUST00000099090.7|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2	ENSMUST00000199164.2|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2
mm39_v1_chr10_-_120735000_120735011	0.005945293789435607	UGCAUUG	ENSMUST00000092143.12|Msrb3|ENSMUSG00000051236.14|methionine sulfoxide reductase B3
mm39_v1_chr3_-_26187883_26187883	0.005879851462855601	UGCAUUG	ENSMUST00000108308.10|Nlgn1|ENSMUSG00000063887.14|neuroligin 1	ENSMUST00000075054.10|Nlgn1|ENSMUSG00000063887.14|neuroligin 1
mm39_v1_chr9_-_89996712_89996779	0.005858488972409978	UGCAUUG	ENSMUST00000191353.2|Morf4l1|ENSMUSG00000062270.15|mortality factor 4 like 1	ENSMUST00000085248.12|Morf4l1|ENSMUSG00000062270.15|mortality factor 4 like 1
mm39_v1_chr11_+_31822211_31822263	0.005789367628061771	UGCAUUG	ENSMUST00000020543.13|Cpeb4|ENSMUSG00000020300.15|cytoplasmic polyadenylation element binding protein 4	ENSMUST00000109412.9|Cpeb4|ENSMUSG00000020300.15|cytoplasmic polyadenylation element binding protein 4
mm39_v1_chr11_-_85030761_85030864	0.0054879140295379806	UGCAUUG	ENSMUST00000108075.9|Usp32|ENSMUSG00000000804.15|ubiquitin specific peptidase 32
mm39_v1_chrX_-_103024847_103024893	0.00532733815968834	UGCAUUG	ENSMUST00000121153.8|Rlim|ENSMUSG00000056537.12|ring finger protein, LIM domain interacting	ENSMUST00000070705.6|Rlim|ENSMUSG00000056537.12|ring finger protein, LIM domain interacting
mm39_v1_chr4_+_84802513_84802551	0.005156222027044386	UGCAUUG	ENSMUST00000047023.13|Cntln|ENSMUSG00000038070.16|centlein, centrosomal protein
mm39_v1_chr12_-_14202041_14202070	0.005118536644558598	UGCAUUG	ENSMUST00000020926.8|Lratd1|ENSMUSG00000020607.8|LRAT domain containing 1
mm39_v1_chr14_-_32110312_32110353	0.005046374649362063	UGCAUUG	ENSMUST00000100723.4|1700024G13Rik|ENSMUSG00000072473.5|RIKEN cDNA 1700024G13 gene
mm39_v1_chr13_+_117738972_117739018	0.004954099992128494	UGCAUUG	ENSMUST00000006991.9|Hcn1|ENSMUSG00000021730.9|hyperpolarization activated cyclic nucleotide gated potassium channel 1
mm39_v1_chr4_-_34882917_34882964	0.004926448173826944	UGCAUUG	ENSMUST00000098163.9|Zfp292|ENSMUSG00000039967.15|zinc finger protein 292	ENSMUST00000047950.6|Zfp292|ENSMUSG00000039967.15|zinc finger protein 292
mm39_v1_chr8_+_107662352_107662410	0.0046532182507115875	UGCAUUG	ENSMUST00000212524.2|Sntb2|ENSMUSG00000041308.7|syntrophin, basic 2	ENSMUST00000047425.5|Sntb2|ENSMUSG00000041308.7|syntrophin, basic 2
mm39_v1_chr3_-_103698853_103698879	0.004601612535156932	UGCAUUG	ENSMUST00000118317.8|Hipk1|ENSMUSG00000008730.18|homeodomain interacting protein kinase 1
mm39_v1_chr3_-_84212069_84212116	0.004177099371689295	UGCAUUG	ENSMUST00000107692.8|Trim2|ENSMUSG00000027993.17|tripartite motif-containing 2
mm39_v1_chr4_-_151946219_151946333	0.0040075511551579575	UGCAUUG	ENSMUST00000097774.9|Camta1|ENSMUSG00000014592.22|calmodulin binding transcription activator 1
mm39_v1_chr12_-_67269323_67269354	0.003982004304066248	UGCAUUG	ENSMUST00000037181.16|Mdga2|ENSMUSG00000034912.19|MAM domain containing glycosylphosphatidylinositol anchor 2
mm39_v1_chr11_+_77576981_77577005	0.0039425174097128	UGCAUUG	ENSMUST00000100802.11|Nufip2|ENSMUSG00000037857.17|nuclear fragile X mental retardation protein interacting protein 2	ENSMUST00000181023.2|Nufip2|ENSMUSG00000037857.17|nuclear fragile X mental retardation protein interacting protein 2
mm39_v1_chr13_+_9143995_9144018	0.0038107204872030224	UGCAUUG	ENSMUST00000091829.4|Larp4b|ENSMUSG00000033499.15|La ribonucleoprotein domain family, member 4B
mm39_v1_chr9_+_74769166_74769203	0.0037774965085896626	UGCAUUG	ENSMUST00000056006.11|Onecut1|ENSMUSG00000043013.11|one cut domain, family member 1
mm39_v1_chrX_+_40490005_40490181	0.003679272345320347	UGCAUUG	ENSMUST00000115103.9|Gria3|ENSMUSG00000001986.17|glutamate receptor, ionotropic, AMPA3 (alpha 3)	ENSMUST00000076349.12|Gria3|ENSMUSG00000001986.17|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm39_v1_chr14_+_49303952_49304045	0.003555039348945812	UGCAUUG	ENSMUST00000037473.6|Ap5m1|ENSMUSG00000036291.7|adaptor-related protein complex 5, mu 1 subunit	ENSMUST00000228238.2|Ap5m1|ENSMUSG00000036291.7|adaptor-related protein complex 5, mu 1 subunit
mm39_v1_chr3_-_85653573_85653573	0.003546553181947026	UGCAUUG	ENSMUST00000118408.8|Fam160a1|ENSMUSG00000051000.18|family with sequence similarity 160, member A1
mm39_v1_chr14_+_67148619_67148698	0.0033939773044843907	UGCAUUG	ENSMUST00000089236.11|Pnma2|ENSMUSG00000046204.15|paraneoplastic antigen MA2	ENSMUST00000122431.3|Pnma2|ENSMUSG00000046204.15|paraneoplastic antigen MA2
mm39_v1_chr14_+_47120311_47120446	0.0028684384218871485	UGCAUUG	ENSMUST00000022386.15|Samd4|ENSMUSG00000021838.18|sterile alpha motif domain containing 4	ENSMUST00000228404.2|Samd4|ENSMUSG00000021838.18|sterile alpha motif domain containing 4	ENSMUST00000100672.11|Samd4|ENSMUSG00000021838.18|sterile alpha motif domain containing 4
mm39_v1_chr8_+_14145848_14145931	0.0027078241931219635	UGCAUUG	ENSMUST00000152652.8|Dlgap2|ENSMUSG00000047495.16|DLG associated protein 2	ENSMUST00000133298.8|Dlgap2|ENSMUSG00000047495.16|DLG associated protein 2
mm39_v1_chr19_+_43428843_43428886	0.002404638001453729	UGCAUUG	ENSMUST00000223787.2|Cnnm1|ENSMUSG00000025189.10|cyclin M1	ENSMUST00000165311.3|Cnnm1|ENSMUSG00000025189.10|cyclin M1
mm39_v1_chr19_+_38825005_38825056	0.0023719180209862585	UGCAUUG	ENSMUST00000037302.6|Tbc1d12|ENSMUSG00000048720.9|TBC1D12: TBC1 domain family, member 12
mm39_v1_chr19_-_6107766_6107815	0.0023040480714254653	UGCAUUG	ENSMUST00000235520.2|Mrpl49|ENSMUSG00000007338.11|mitochondrial ribosomal protein L49	ENSMUST00000007482.8|Mrpl49|ENSMUSG00000007338.11|mitochondrial ribosomal protein L49
mm39_v1_chr17_-_91400499_91400504	0.0022552922075339257	UGCAUUG	ENSMUST00000160844.10|Nrxn1|ENSMUSG00000024109.19|neurexin I
mm39_v1_chr15_+_39061612_39061758	0.0020595172395510863	UGCAUUG	ENSMUST00000082054.12|Rims2|ENSMUSG00000037386.17|regulating synaptic membrane exocytosis 2	ENSMUST00000227243.2|Rims2|ENSMUSG00000037386.17|regulating synaptic membrane exocytosis 2	ENSMUST00000042917.10|Rims2|ENSMUSG00000037386.17|regulating synaptic membrane exocytosis 2
mm39_v1_chr4_-_136684082_136684176	0.001900334131142633	UGCAUUG	ENSMUST00000030420.9|Epha8|ENSMUSG00000028661.9|Eph receptor A8
mm39_v1_chr5_-_66775979_66776056	0.0018972689898839761	UGCAUUG	ENSMUST00000162382.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000159786.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000162349.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000087256.12|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000160103.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000160870.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2
mm39_v1_chr10_-_13350106_13350185	0.00182134940598641	UGCAUUG	ENSMUST00000105545.12|Phactr2|ENSMUSG00000062866.17|phosphatase and actin regulator 2
mm39_v1_chr15_+_7840327_7840327	0.0017882271757057983	UGCAUUG	ENSMUST00000022744.5|Gdnf|ENSMUSG00000022144.5|glial cell line derived neurotrophic factor
mm39_v1_chr4_-_49845549_49845549	0.001653173123727827	UGCAUUG	ENSMUST00000093859.11|Grin3a|ENSMUSG00000039579.16|glutamate receptor ionotropic, NMDA3A	ENSMUST00000076674.4|Grin3a|ENSMUSG00000039579.16|glutamate receptor ionotropic, NMDA3A
mm39_v1_chr15_+_102829538_102829568	0.0016156894635290632	UGCAUUG	ENSMUST00000001700.7|Hoxc13|ENSMUSG00000001655.7|homeobox C13
mm39_v1_chr13_+_93810911_93810959	0.0015802382638044968	UGCAUUG	ENSMUST00000048001.8|Dmgdh|ENSMUSG00000042102.8|dimethylglycine dehydrogenase precursor
mm39_v1_chr11_-_55498559_55498650	0.0015698213757604838	UGCAUUG	ENSMUST00000108853.8|Glra1|ENSMUSG00000000263.16|glycine receptor, alpha 1 subunit	ENSMUST00000075603.5|Glra1|ENSMUSG00000000263.16|glycine receptor, alpha 1 subunit
mm39_v1_chr16_+_93885775_93885793	0.0014523063267388326	UGCAUUG	ENSMUST00000072182.9|Sim2|ENSMUSG00000062713.9|single-minded family bHLH transcription factor 2
mm39_v1_chr9_+_65536892_65536965	0.0014447720469896222	UGCAUUG	ENSMUST00000169003.8|Rbpms2|ENSMUSG00000032387.16|RNA binding protein with multiple splicing 2
mm39_v1_chr5_+_28370687_28370720	0.0013676127627142295	UGCAUUG	ENSMUST00000036177.9|En2|ENSMUSG00000039095.9|engrailed 2
mm39_v1_chr3_+_127426783_127426789	0.0013637420637667417	UGCAUUG	ENSMUST00000029587.9|Neurog2|ENSMUSG00000027967.9|neurogenin 2
mm39_v1_chr6_+_105654729_105654756	0.0013539328541327966	UGCAUUG	ENSMUST00000089208.9|Cntn4|ENSMUSG00000064293.15|contactin 4
mm39_v1_chr7_-_141009264_141009339	0.001103327926430398	UGCAUUG	ENSMUST00000164387.2|Cend1|ENSMUSG00000060240.13|cell cycle exit and neuronal differentiation 1	ENSMUST00000137488.2|Cend1|ENSMUSG00000060240.13|cell cycle exit and neuronal differentiation 1	ENSMUST00000084436.10|Cend1|ENSMUSG00000060240.13|cell cycle exit and neuronal differentiation 1
mm39_v1_chr14_-_124914516_124914539	0.0010485200571758	UGCAUUG	ENSMUST00000095529.10|Fgf14|ENSMUSG00000025551.14|fibroblast growth factor 14
mm39_v1_chr14_+_9646630_9646731	0.0010235467331758952	UGCAUUG	ENSMUST00000112658.8|Cadps|ENSMUSG00000054423.15|Ca2+-dependent secretion activator	ENSMUST00000112657.9|Cadps|ENSMUSG00000054423.15|Ca2+-dependent secretion activator	ENSMUST00000177814.2|Cadps|ENSMUSG00000054423.15|Ca2+-dependent secretion activator	ENSMUST00000067491.14|Cadps|ENSMUSG00000054423.15|Ca2+-dependent secretion activator
mm39_v1_chr3_+_31956814_31956852	0.0008998250032413722	UGCAUUG	ENSMUST00000192429.6|Kcnmb2|ENSMUSG00000037610.16|potassium large conductance calcium-activated channel, subfamily M, beta member 2	ENSMUST00000191869.6|Kcnmb2|ENSMUSG00000037610.16|potassium large conductance calcium-activated channel, subfamily M, beta member 2	ENSMUST00000178668.2|Kcnmb2|ENSMUSG00000037610.16|potassium large conductance calcium-activated channel, subfamily M, beta member 2	ENSMUST00000119970.8|Kcnmb2|ENSMUSG00000037610.16|potassium large conductance calcium-activated channel, subfamily M, beta member 2
mm39_v1_chr3_+_105359641_105359688	0.0008857776915090325	UGCAUUG	ENSMUST00000098761.10|Kcnd3|ENSMUSG00000040896.17|potassium voltage-gated channel, Shal-related family, member 3
mm39_v1_chr11_+_105480796_105480857	0.0008414964163816705	UGCAUUG	ENSMUST00000168598.8|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	ENSMUST00000100330.10|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm39_v1_chr9_+_68561042_68561068	0.000752560311868491	UGCAUUG	ENSMUST00000034766.14|Rora|ENSMUSG00000032238.18|RAR-related orphan receptor alpha
mm39_v1_chr11_-_47270201_47270349	0.0006013536045815215	UGCAUUG	ENSMUST00000077221.6|Sgcd|ENSMUSG00000020354.16|sarcoglycan, delta (dystrophin-associated glycoprotein)
mm39_v1_chr1_+_187730018_187730031	0.0005724320658380343	UGCAUUG	ENSMUST00000027906.13|Esrrg|ENSMUSG00000026610.14|estrogen-related receptor gamma
mm39_v1_chr1_-_25267894_25267916	0.0005382156010063817	UGCAUUG	ENSMUST00000126626.8|Adgrb3|ENSMUSG00000033569.18|adhesion G protein-coupled receptor B3
mm39_v1_chr19_+_22425565_22425596	0.00047289440839403947	UGCAUUG	ENSMUST00000037901.14|Trpm3|ENSMUSG00000052387.17|transient receptor potential cation channel, subfamily M, member 3
mm39_v1_chr13_-_60325170_60325190	0.0004378416911072479	UGCAUUG	ENSMUST00000065086.6|Gas1|ENSMUSG00000052957.9|growth arrest specific 1
mm39_v1_chr1_+_191638854_191638879	0.0003754175888978682	UGCAUUG	ENSMUST00000044954.7|Slc30a1|ENSMUSG00000037434.8|solute carrier family 30 (zinc transporter), member 1
mm39_v1_chr19_+_59446804_59446883	0.00018939257196100425	UGCAUUG	ENSMUST00000062216.4|Emx2|ENSMUSG00000043969.5|empty spiracles homeobox 2
mm39_v1_chr7_+_131144596_131144596	0.00017878348486761794	UGCAUUG	ENSMUST00000046093.6|Hmx3|ENSMUSG00000040148.6|H6 homeobox 3
mm39_v1_chr6_-_28134544_28134544	0.0001731633941934403	UGCAUUG	ENSMUST00000115323.8|Grm8|ENSMUSG00000024211.16|glutamate receptor, metabotropic 8
mm39_v1_chr17_+_27874519_27874542	0.00013543838523748456	UGCAUUG	ENSMUST00000045896.11|Pacsin1|ENSMUSG00000040276.16|protein kinase C and casein kinase substrate in neurons 1
