mm39_v1_chr4_-_55532453_55532485	0.17584106700332194	UUGUUCG	ENSMUST00000132746.2|Klf4|ENSMUSG00000003032.9|Kruppel-like factor 4 (gut)	ENSMUST00000107619.3|Klf4|ENSMUSG00000003032.9|Kruppel-like factor 4 (gut)
mm39_v1_chr9_+_59658156_59658205	0.1685994985129882	UUGUUCG	ENSMUST00000136740.8|Myo9a|ENSMUSG00000039585.16|myosin IXa	ENSMUST00000135298.8|Myo9a|ENSMUSG00000039585.16|myosin IXa	ENSMUST00000128341.2|Myo9a|ENSMUSG00000039585.16|myosin IXa
mm39_v1_chr16_-_23807602_23807602	0.15061957827125033	UUGUUCG	ENSMUST00000023151.6|Bcl6|ENSMUSG00000022508.6|B cell leukemia/lymphoma 6
mm39_v1_chr1_+_59802543_59802559	0.14032324763413245	UUGUUCG	ENSMUST00000087435.7|Bmpr2|ENSMUSG00000067336.7|bone morphogenetic protein receptor, type II (serine/threonine kinase)
mm39_v1_chr3_+_53371086_53371102	0.13105053768076813	UUGUUCG	ENSMUST00000058577.5|Proser1|ENSMUSG00000049504.13|proline and serine rich 1
mm39_v1_chr13_+_110039620_110039645	0.11553530381213863	UUGUUCG	ENSMUST00000120664.8|Pde4d|ENSMUSG00000021699.18|phosphodiesterase 4D, cAMP specific
mm39_v1_chrX_+_105070907_105070929	0.10848176365439831	UUGUUCG	ENSMUST00000055941.7|Atp7a|ENSMUSG00000033792.13|ATPase, Cu++ transporting, alpha polypeptide
mm39_v1_chr11_-_102076028_102076142	0.09586726701803654	UUGUUCG	ENSMUST00000107156.9|Lsm12|ENSMUSG00000020922.12|LSM12 homolog	ENSMUST00000021297.6|Lsm12|ENSMUSG00000020922.12|LSM12 homolog
mm39_v1_chr14_-_21102487_21102592	0.09307734460191701	UUGUUCG	ENSMUST00000154460.8|Ap3m1|ENSMUSG00000021824.14|adaptor-related protein complex 3, mu 1 subunit	ENSMUST00000130291.8|Ap3m1|ENSMUSG00000021824.14|adaptor-related protein complex 3, mu 1 subunit
mm39_v1_chr9_-_62888156_62888184	0.0882814850495864	UUGUUCG	ENSMUST00000098651.6|Pias1|ENSMUSG00000032405.11|protein inhibitor of activated STAT 1	ENSMUST00000214830.2|Pias1|ENSMUSG00000032405.11|protein inhibitor of activated STAT 1
mm39_v1_chr7_+_112278520_112278532	0.07787910747817113	UUGUUCG	ENSMUST00000084705.13|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000239442.2|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000239404.2|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000059768.18|Tead1|ENSMUSG00000055320.19|TEA domain family member 1
mm39_v1_chr13_-_111945499_111945552	0.07129370761904079	UUGUUCG	ENSMUST00000109267.9|Map3k1|ENSMUSG00000021754.18|mitogen-activated protein kinase kinase kinase 1
mm39_v1_chr14_-_14466825_14466883	0.06973853545129868	UUGUUCG	ENSMUST00000225234.2|Abhd6|ENSMUSG00000025277.15|abhydrolase domain containing 6	ENSMUST00000166497.9|Abhd6|ENSMUSG00000025277.15|abhydrolase domain containing 6
mm39_v1_chr14_+_99536111_99536133	0.0690960775388332	UUGUUCG	ENSMUST00000005279.8|Klf5|ENSMUSG00000005148.9|Kruppel-like factor 5
mm39_v1_chr13_-_40887244_40887313	0.06844922999449427	UUGUUCG	ENSMUST00000110193.9|Tfap2a|ENSMUSG00000021359.17|transcription factor AP-2, alpha
mm39_v1_chr15_-_50753061_50753118	0.06589521182910534	UUGUUCG	ENSMUST00000165201.9|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1	ENSMUST00000184458.8|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1
mm39_v1_chr4_+_137720326_137720359	0.06373151147306863	UUGUUCG	ENSMUST00000139759.8|Eif4g3|ENSMUSG00000028760.17|eukaryotic translation initiation factor 4 gamma, 3	ENSMUST00000058133.10|Eif4g3|ENSMUSG00000028760.17|eukaryotic translation initiation factor 4 gamma, 3	ENSMUST00000105830.9|Eif4g3|ENSMUSG00000028760.17|eukaryotic translation initiation factor 4 gamma, 3	ENSMUST00000084215.12|Eif4g3|ENSMUSG00000028760.17|eukaryotic translation initiation factor 4 gamma, 3
mm39_v1_chr18_+_36693646_36693673	0.05927771694938427	UUGUUCG	ENSMUST00000155329.9|Ankhd1|ENSMUSG00000024483.20|ankyrin repeat and KH domain containing 1
mm39_v1_chr4_-_131871797_131871842	0.05827128710543448	UUGUUCG	ENSMUST00000056336.2|Oprd1|ENSMUSG00000050511.2|opioid receptor, delta 1
mm39_v1_chr10_+_89580849_89580884	0.05785586170502161	UUGUUCG	ENSMUST00000020112.7|Uhrf1bp1l|ENSMUSG00000019951.11|UHRF1 (ICBP90) binding protein 1-like
mm39_v1_chr11_+_93886906_93886929	0.05633595566114012	UUGUUCG	ENSMUST00000041956.14|Spag9|ENSMUSG00000020859.17|sperm associated antigen 9
mm39_v1_chr11_-_18968979_18968990	0.05584229021729821	UUGUUCG	ENSMUST00000144988.8|Meis1|ENSMUSG00000020160.19|Meis homeobox 1
mm39_v1_chr1_-_155293075_155293104	0.05492423361632284	UUGUUCG	ENSMUST00000027741.12|Xpr1|ENSMUSG00000026469.15|xenotropic and polytropic retrovirus receptor 1
mm39_v1_chr3_+_122522592_122522652	0.05329510951766083	UUGUUCG	ENSMUST00000066728.10|Pde5a|ENSMUSG00000053965.11|phosphodiesterase 5A, cGMP-specific
mm39_v1_chr15_-_78004211_78004232	0.05292039893192034	UUGUUCG	ENSMUST00000019290.3|Cacng2|ENSMUSG00000019146.3|calcium channel, voltage-dependent, gamma subunit 2
mm39_v1_chr11_-_78588194_78588205	0.05183886704037586	UUGUUCG	ENSMUST00000142739.8|Nlk|ENSMUSG00000017376.16|nemo like kinase
mm39_v1_chr13_-_74956030_74956108	0.05151726300505473	UUGUUCG	ENSMUST00000065629.6|Cast|ENSMUSG00000021585.11|calpastatin
mm39_v1_chr10_+_19810037_19810272	0.051324312251137705	UUGUUCG	ENSMUST00000095806.10|Map3k5|ENSMUSG00000071369.12|mitogen-activated protein kinase kinase kinase 5	ENSMUST00000120259.8|Map3k5|ENSMUSG00000071369.12|mitogen-activated protein kinase kinase kinase 5
mm39_v1_chr3_+_60408600_60408663	0.051194691739725254	UUGUUCG	ENSMUST00000099087.8|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1
mm39_v1_chr1_+_131935342_131935373	0.05013168569230189	UUGUUCG	ENSMUST00000086556.12|Elk4|ENSMUSG00000026436.16|ELK4, member of ETS oncogene family
mm39_v1_chr16_-_94114415_94114445	0.04968306246908414	UUGUUCG	ENSMUST00000163193.9|Hlcs|ENSMUSG00000040820.17|holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)
mm39_v1_chr15_+_10177709_10177741	0.0494325326570318	UUGUUCG	ENSMUST00000124470.8|Prlr|ENSMUSG00000005268.21|prolactin receptor
mm39_v1_chr19_-_32365862_32365912	0.04752636779995608	UUGUUCG	ENSMUST00000099514.10|Sgms1|ENSMUSG00000040451.19|sphingomyelin synthase 1
mm39_v1_chr7_-_78228116_78228157	0.04715148214356484	UUGUUCG	ENSMUST00000206268.2|Ntrk3|ENSMUSG00000059146.13|neurotrophic tyrosine kinase, receptor, type 3	ENSMUST00000039431.14|Ntrk3|ENSMUSG00000059146.13|neurotrophic tyrosine kinase, receptor, type 3
mm39_v1_chr14_-_30850795_30850880	0.042943598003128254	UUGUUCG	ENSMUST00000049732.11|Smim4|ENSMUSG00000058351.12|small integral membrane protein 4	ENSMUST00000090205.5|Smim4|ENSMUSG00000058351.12|small integral membrane protein 4	ENSMUST00000064032.10|Smim4|ENSMUSG00000058351.12|small integral membrane protein 4
mm39_v1_chr11_-_86248395_86248442	0.04286487378982952	UUGUUCG	ENSMUST00000043624.9|Med13|ENSMUSG00000034297.15|mediator complex subunit 13
mm39_v1_chr14_-_60324265_60324374	0.042844685543439245	UUGUUCG	ENSMUST00000080368.13|Atp8a2|ENSMUSG00000021983.17|ATPase, aminophospholipid transporter-like, class I, type 8A, member 2
mm39_v1_chr2_+_146063841_146063841	0.04141694841417303	UUGUUCG	ENSMUST00000089257.6|Insm1|ENSMUSG00000068154.6|insulinoma-associated 1
mm39_v1_chr10_+_128583734_128583765	0.03781994825166634	UUGUUCG	ENSMUST00000163377.10|Pym1|ENSMUSG00000064030.16|PYM homolog 1, exon junction complex associated factor
mm39_v1_chr4_-_46566431_46566472	0.03781660836172571	UUGUUCG	ENSMUST00000030021.14|Coro2a|ENSMUSG00000028337.15|coronin, actin binding protein 2A	ENSMUST00000107757.8|Coro2a|ENSMUSG00000028337.15|coronin, actin binding protein 2A
mm39_v1_chr6_-_52185674_52185702	0.037502233430494344	UUGUUCG	ENSMUST00000062829.9|Hoxa6|ENSMUSG00000043219.10|homeobox A6
mm39_v1_chr18_+_9212154_9212171	0.03696150441674295	UUGUUCG	ENSMUST00000041080.7|Fzd8|ENSMUSG00000036904.7|frizzled class receptor 8
mm39_v1_chr18_+_42408418_42408457	0.03674780689117932	UUGUUCG	ENSMUST00000091920.6|Rbm27|ENSMUSG00000024491.17|RNA binding motif protein 27	ENSMUST00000046972.14|Rbm27|ENSMUSG00000024491.17|RNA binding motif protein 27	ENSMUST00000236240.2|Rbm27|ENSMUSG00000024491.17|RNA binding motif protein 27
mm39_v1_chr1_+_131725119_131725157	0.03485318364274465	UUGUUCG	ENSMUST00000112393.9|Pm20d1|ENSMUSG00000042251.13|peptidase M20 domain containing 1	ENSMUST00000048660.12|Pm20d1|ENSMUSG00000042251.13|peptidase M20 domain containing 1
mm39_v1_chr13_-_46118433_46118477	0.03408549912279911	UUGUUCG	ENSMUST00000167708.4|Atxn1|ENSMUSG00000046876.17|ataxin 1	ENSMUST00000091628.11|Atxn1|ENSMUSG00000046876.17|ataxin 1	ENSMUST00000180110.9|Atxn1|ENSMUSG00000046876.17|ataxin 1
mm39_v1_chr2_+_68691778_68691854	0.033445220874117214	UUGUUCG	ENSMUST00000028426.9|Cers6|ENSMUSG00000027035.11|ceramide synthase 6
mm39_v1_chr13_+_81031512_81031543	0.03314434502030357	UUGUUCG	ENSMUST00000099356.10|Arrdc3|ENSMUSG00000074794.11|arrestin domain containing 3
mm39_v1_chr8_+_124133832_124133853	0.032676539027359154	UUGUUCG	ENSMUST00000098324.4|Mc1r|ENSMUSG00000074037.4|melanocortin 1 receptor
mm39_v1_chr2_-_24809583_24809628	0.031540072355980296	UUGUUCG	ENSMUST00000046227.12|Ehmt1|ENSMUSG00000036893.18|euchromatic histone methyltransferase 1	ENSMUST00000114432.9|Ehmt1|ENSMUSG00000036893.18|euchromatic histone methyltransferase 1	ENSMUST00000091348.11|Ehmt1|ENSMUSG00000036893.18|euchromatic histone methyltransferase 1	ENSMUST00000102938.10|Ehmt1|ENSMUSG00000036893.18|euchromatic histone methyltransferase 1	ENSMUST00000150379.2|Ehmt1|ENSMUSG00000036893.18|euchromatic histone methyltransferase 1	ENSMUST00000152161.8|Ehmt1|ENSMUSG00000036893.18|euchromatic histone methyltransferase 1	ENSMUST00000147147.8|Ehmt1|ENSMUSG00000036893.18|euchromatic histone methyltransferase 1
mm39_v1_chr1_+_104696235_104696254	0.031238441673325887	UUGUUCG	ENSMUST00000062528.9|Cdh20|ENSMUSG00000050840.9|cadherin 20
mm39_v1_chr6_-_136150076_136150146	0.030352078137148603	UUGUUCG	ENSMUST00000053880.13|Grin2b|ENSMUSG00000030209.15|glutamate receptor, ionotropic, NMDA2B (epsilon 2)
mm39_v1_chr1_-_160958998_160959081	0.029253012879970203	UUGUUCG	ENSMUST00000111611.8|Klhl20|ENSMUSG00000026705.17|kelch-like 20
mm39_v1_chr6_+_135174975_135174990	0.02838936820125245	UUGUUCG	ENSMUST00000111915.8|Fam234b|ENSMUSG00000030207.16|family with sequence similarity 234, member B	ENSMUST00000111916.2|Fam234b|ENSMUSG00000030207.16|family with sequence similarity 234, member B
mm39_v1_chr3_+_116653113_116653217	0.0281974255246861	UUGUUCG	ENSMUST00000040260.11|Frrs1|ENSMUSG00000033386.11|ferric-chelate reductase 1
mm39_v1_chr1_+_106099482_106099598	0.02771674153127125	UUGUUCG	ENSMUST00000061047.7|Phlpp1|ENSMUSG00000044340.8|PH domain and leucine rich repeat protein phosphatase 1
mm39_v1_chr4_-_126150066_126150163	0.027655058068462846	UUGUUCG	ENSMUST00000122129.8|Map7d1|ENSMUSG00000028849.18|MAP7 domain containing 1	ENSMUST00000061143.15|Map7d1|ENSMUSG00000028849.18|MAP7 domain containing 1	ENSMUST00000106132.3|Map7d1|ENSMUSG00000028849.18|MAP7 domain containing 1
mm39_v1_chr19_+_29229147_29229256	0.027653355297716474	UUGUUCG	ENSMUST00000025705.7|Jak2|ENSMUSG00000024789.14|Janus kinase 2	ENSMUST00000065796.10|Jak2|ENSMUSG00000024789.14|Janus kinase 2	ENSMUST00000236990.2|Jak2|ENSMUSG00000024789.14|Janus kinase 2
mm39_v1_chr5_-_108022900_108022973	0.024137931543913225	UUGUUCG	ENSMUST00000138111.8|Evi5|ENSMUSG00000011831.17|ecotropic viral integration site 5	ENSMUST00000112642.8|Evi5|ENSMUSG00000011831.17|ecotropic viral integration site 5
mm39_v1_chr7_-_108682491_108682544	0.02312902492605133	UUGUUCG	ENSMUST00000120876.2|Ric3|ENSMUSG00000048330.15|RIC3 acetylcholine receptor chaperone	ENSMUST00000055993.13|Ric3|ENSMUSG00000048330.15|RIC3 acetylcholine receptor chaperone
mm39_v1_chrX_+_159551009_159551114	0.021843435301063908	UUGUUCG	ENSMUST00000033650.14|Rs1|ENSMUSG00000031293.14|retinoschisis (X-linked, juvenile) 1 (human)
mm39_v1_chr1_+_136552639_136552688	0.02122492336044524	UUGUUCG	ENSMUST00000047734.15|Zfp281|ENSMUSG00000041483.15|zinc finger protein 281	ENSMUST00000112046.2|Zfp281|ENSMUSG00000041483.15|zinc finger protein 281
mm39_v1_chr5_-_31337453_31337502	0.021143845769702047	UUGUUCG	ENSMUST00000202639.4|Gtf3c2|ENSMUSG00000106864.4|general transcription factor IIIC, polypeptide 2, beta	ENSMUST00000088010.12|Gtf3c2|ENSMUSG00000106864.4|general transcription factor IIIC, polypeptide 2, beta
mm39_v1_chr7_-_136916123_136916174	0.020720050887373626	UUGUUCG	ENSMUST00000106118.10|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000168203.2|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000169486.9|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000033378.13|Ebf3|ENSMUSG00000010476.15|early B cell factor 3
mm39_v1_chr4_+_148888877_148888897	0.017799491938630646	UUGUUCG	ENSMUST00000094464.10|Casz1|ENSMUSG00000028977.18|castor zinc finger 1	ENSMUST00000122222.8|Casz1|ENSMUSG00000028977.18|castor zinc finger 1
mm39_v1_chr6_-_13677928_13677974	0.0172546183837811	UUGUUCG	ENSMUST00000203078.2|Bmt2|ENSMUSG00000042742.8|base methyltransferase of 25S rRNA 2	ENSMUST00000045235.8|Bmt2|ENSMUSG00000042742.8|base methyltransferase of 25S rRNA 2
mm39_v1_chr6_-_32565127_32565148	0.017071405992067447	UUGUUCG	ENSMUST00000115096.4|Plxna4|ENSMUSG00000029765.13|plexin A4
mm39_v1_chr12_-_79343040_79343086	0.014625618900124033	UUGUUCG	ENSMUST00000218377.2|Zfyve26|ENSMUSG00000066440.6|zinc finger, FYVE domain containing 26	ENSMUST00000021547.8|Zfyve26|ENSMUSG00000066440.6|zinc finger, FYVE domain containing 26
mm39_v1_chr5_+_89034666_89034684	0.014577854943050108	UUGUUCG	ENSMUST00000148750.8|Slc4a4|ENSMUSG00000060961.17|solute carrier family 4 (anion exchanger), member 4
mm39_v1_chr15_-_56557920_56557950	0.014505352615850708	UUGUUCG	ENSMUST00000050544.8|Has2|ENSMUSG00000022367.8|hyaluronan synthase 2
mm39_v1_chr1_-_151304191_151304225	0.014341009490345938	UUGUUCG	ENSMUST00000064771.12|Swt1|ENSMUSG00000052748.15|SWT1 RNA endoribonuclease homolog (S. cerevisiae)
mm39_v1_chr11_+_31822211_31822263	0.014265430120370468	UUGUUCG	ENSMUST00000020543.13|Cpeb4|ENSMUSG00000020300.15|cytoplasmic polyadenylation element binding protein 4	ENSMUST00000109412.9|Cpeb4|ENSMUSG00000020300.15|cytoplasmic polyadenylation element binding protein 4
mm39_v1_chr4_+_83443777_83443851	0.014155579672796877	UUGUUCG	ENSMUST00000053414.13|Ccdc171|ENSMUSG00000052407.18|coiled-coil domain containing 171	ENSMUST00000231339.2|Ccdc171|ENSMUSG00000052407.18|coiled-coil domain containing 171	ENSMUST00000126429.8|Ccdc171|ENSMUSG00000052407.18|coiled-coil domain containing 171
mm39_v1_chr13_+_95012107_95012119	0.013463793378782722	UUGUUCG	ENSMUST00000022195.13|Otp|ENSMUSG00000021685.13|orthopedia homeobox
mm39_v1_chr4_-_155306992_155307049	0.012901201447498619	UUGUUCG	ENSMUST00000084103.10|Ski|ENSMUSG00000029050.16|ski sarcoma viral oncogene homolog (avian)	ENSMUST00000030917.6|Ski|ENSMUSG00000029050.16|ski sarcoma viral oncogene homolog (avian)
mm39_v1_chr15_-_100393369_100393369	0.012624523388005128	UUGUUCG	ENSMUST00000061457.7|Csrnp2|ENSMUSG00000044636.7|cysteine-serine-rich nuclear protein 2
mm39_v1_chr10_-_87329513_87329528	0.012355490803267066	UUGUUCG	ENSMUST00000020243.10|Ascl1|ENSMUSG00000020052.10|achaete-scute family bHLH transcription factor 1
mm39_v1_chr3_-_106455042_106455118	0.01230436158957066	UUGUUCG	ENSMUST00000039153.14|Cept1|ENSMUSG00000040774.16|choline/ethanolaminephosphotransferase 1	ENSMUST00000148269.2|Cept1|ENSMUSG00000040774.16|choline/ethanolaminephosphotransferase 1	ENSMUST00000068301.11|Cept1|ENSMUSG00000040774.16|choline/ethanolaminephosphotransferase 1
mm39_v1_chr12_-_105651437_105651490	0.0111616290226003	UUGUUCG	ENSMUST00000041055.9|Atg2b|ENSMUSG00000041341.11|autophagy related 2B
mm39_v1_chrX_-_102865546_102865598	0.010996409173002509	UUGUUCG	ENSMUST00000042664.10|Slc16a2|ENSMUSG00000033965.11|solute carrier family 16 (monocarboxylic acid transporters), member 2
mm39_v1_chr2_+_152068729_152068828	0.010308402448371763	UUGUUCG	ENSMUST00000099224.10|Csnk2a1|ENSMUSG00000074698.11|casein kinase 2, alpha 1 polypeptide	ENSMUST00000124791.8|Csnk2a1|ENSMUSG00000074698.11|casein kinase 2, alpha 1 polypeptide	ENSMUST00000133119.2|Csnk2a1|ENSMUSG00000074698.11|casein kinase 2, alpha 1 polypeptide
mm39_v1_chr3_+_32871669_32871726	0.010004885680681828	UUGUUCG	ENSMUST00000072312.12|Usp13|ENSMUSG00000056900.14|ubiquitin specific peptidase 13 (isopeptidase T-3)	ENSMUST00000108228.8|Usp13|ENSMUSG00000056900.14|ubiquitin specific peptidase 13 (isopeptidase T-3)
mm39_v1_chr19_+_53298906_53298983	0.009929956173636479	UUGUUCG	ENSMUST00000003870.15|Mxi1|ENSMUSG00000025025.15|MAX interactor 1, dimerization protein
mm39_v1_chr6_-_35516700_35516823	0.00938264481332127	UUGUUCG	ENSMUST00000201026.2|Mtpn|ENSMUSG00000029840.9|myotrophin	ENSMUST00000031866.9|Mtpn|ENSMUSG00000029840.9|myotrophin
mm39_v1_chr18_+_11052458_11052479	0.009010570836419055	UUGUUCG	ENSMUST00000047762.10|Gata6|ENSMUSG00000005836.11|GATA binding protein 6
mm39_v1_chr2_-_155356716_155356775	0.008814281852451157	UUGUUCG	ENSMUST00000029131.11|Ggt7|ENSMUSG00000027603.16|gamma-glutamyltransferase 7
mm39_v1_chr7_-_70010341_70010494	0.008294491574833083	UUGUUCG	ENSMUST00000032768.15|Nr2f2|ENSMUSG00000030551.15|nuclear receptor subfamily 2, group F, member 2
mm39_v1_chr14_+_67982630_67982718	0.007713890943989782	UUGUUCG	ENSMUST00000223929.2|Gnrh1|ENSMUSG00000015812.9|gonadotropin releasing hormone 1	ENSMUST00000111095.4|Gnrh1|ENSMUSG00000015812.9|gonadotropin releasing hormone 1
mm39_v1_chr3_+_58322119_58322161	0.007085942866806396	UUGUUCG	ENSMUST00000099090.7|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2	ENSMUST00000199164.2|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2
mm39_v1_chr11_+_77576981_77577005	0.006734594674515584	UUGUUCG	ENSMUST00000100802.11|Nufip2|ENSMUSG00000037857.17|nuclear fragile X mental retardation protein interacting protein 2	ENSMUST00000181023.2|Nufip2|ENSMUSG00000037857.17|nuclear fragile X mental retardation protein interacting protein 2
mm39_v1_chr10_+_25235696_25235742	0.005632319314189871	UUGUUCG	ENSMUST00000053748.16|Epb41l2|ENSMUSG00000019978.17|erythrocyte membrane protein band 4.1 like 2
mm39_v1_chr5_-_123320767_123320794	0.005450397843413693	UUGUUCG	ENSMUST00000154713.8|Hpd|ENSMUSG00000029445.14|4-hydroxyphenylpyruvic acid dioxygenase	ENSMUST00000031398.14|Hpd|ENSMUSG00000029445.14|4-hydroxyphenylpyruvic acid dioxygenase
mm39_v1_chr12_-_50695881_50696064	0.005349380176045751	UUGUUCG	ENSMUST00000002765.9|Prkd1|ENSMUSG00000002688.9|protein kinase D1
mm39_v1_chr15_-_36794741_36794791	0.005180099255372038	UUGUUCG	ENSMUST00000110361.8|Ywhaz|ENSMUSG00000022285.18|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	ENSMUST00000022894.14|Ywhaz|ENSMUSG00000022285.18|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	ENSMUST00000110359.2|Ywhaz|ENSMUSG00000022285.18|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm39_v1_chr8_+_71151581_71151599	0.0047835984053389265	UUGUUCG	ENSMUST00000095267.8|Jund|ENSMUSG00000071076.9|jun D proto-oncogene
mm39_v1_chr7_+_58878490_58878518	0.004388231598567408	UUGUUCG	ENSMUST00000202945.4|Ube3a|ENSMUSG00000025326.13|ubiquitin protein ligase E3A	ENSMUST00000107537.5|Ube3a|ENSMUSG00000025326.13|ubiquitin protein ligase E3A
mm39_v1_chr3_+_80943667_80943723	0.00431232185502656	UUGUUCG	ENSMUST00000029652.4|Pdgfc|ENSMUSG00000028019.10|platelet-derived growth factor, C polypeptide
mm39_v1_chr4_-_70328659_70328702	0.004077635636500623	UUGUUCG	ENSMUST00000144099.8|Cdk5rap2|ENSMUSG00000039298.17|CDK5 regulatory subunit associated protein 2
mm39_v1_chr12_+_83810402_83810423	0.0036177472449229666	UUGUUCG	ENSMUST00000121733.8|Papln|ENSMUSG00000021223.14|papilin, proteoglycan-like sulfated glycoprotein
mm39_v1_chr11_-_63813083_63813119	0.0035786513885916462	UUGUUCG	ENSMUST00000094103.4|Hs3st3b1|ENSMUSG00000070407.6|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1
mm39_v1_chr1_+_180978491_180978549	0.0034155451059144104	UUGUUCG	ENSMUST00000134115.8|Cnih4|ENSMUSG00000062169.14|cornichon family AMPA receptor auxiliary protein 4	ENSMUST00000111059.2|Cnih4|ENSMUSG00000062169.14|cornichon family AMPA receptor auxiliary protein 4
mm39_v1_chr2_+_105499233_105499259	0.003242765783354059	UUGUUCG	ENSMUST00000111086.11|Pax6|ENSMUSG00000027168.22|paired box 6	ENSMUST00000111087.10|Pax6|ENSMUSG00000027168.22|paired box 6
mm39_v1_chr6_-_118174679_118174704	0.0025163889374490013	UUGUUCG	ENSMUST00000088790.9|Ret|ENSMUSG00000030110.14|ret proto-oncogene
mm39_v1_chr9_-_99758200_99758245	0.0023177145354528624	UUGUUCG	ENSMUST00000054819.10|Sox14|ENSMUSG00000053747.10|SRY (sex determining region Y)-box 14
mm39_v1_chr5_+_53713137_53713176	0.0022119039884428114	UUGUUCG	ENSMUST00000087360.9|Rbpj|ENSMUSG00000039191.13|recombination signal binding protein for immunoglobulin kappa J region
mm39_v1_chr2_-_136229849_136229905	0.002176192002054447	UUGUUCG	ENSMUST00000035264.9|Pak5|ENSMUSG00000039913.13|p21 (RAC1) activated kinase 5	ENSMUST00000077200.4|Pak5|ENSMUSG00000039913.13|p21 (RAC1) activated kinase 5
mm39_v1_chr15_-_95426419_95426523	0.0020318474819671496	UUGUUCG	ENSMUST00000229933.2|Nell2|ENSMUSG00000022454.18|NEL-like 2	ENSMUST00000166170.9|Nell2|ENSMUSG00000022454.18|NEL-like 2
mm39_v1_chr1_-_136888118_136888234	0.0019292959395272127	UUGUUCG	ENSMUST00000192357.6|Nr5a2|ENSMUSG00000026398.15|nuclear receptor subfamily 5, group A, member 2	ENSMUST00000027649.14|Nr5a2|ENSMUSG00000026398.15|nuclear receptor subfamily 5, group A, member 2
mm39_v1_chr8_+_121811091_121811125	0.0017148418993556507	UUGUUCG	ENSMUST00000181504.2|Foxf1|ENSMUSG00000042812.6|forkhead box F1
mm39_v1_chr14_-_118474404_118474448	0.0014264087307018496	UUGUUCG	ENSMUST00000170662.2|Sox21|ENSMUSG00000061517.9|SRY (sex determining region Y)-box 21
mm39_v1_chr14_+_3575879_3575951	0.0010922869134475863	UUGUUCG	ENSMUST00000150727.8|Ube2e2|ENSMUSG00000058317.13|ubiquitin-conjugating enzyme E2E 2
mm39_v1_chr15_+_54434576_54434596	0.0010476451362418733	UUGUUCG	ENSMUST00000025356.4|Mal2|ENSMUSG00000024479.4|mal, T cell differentiation protein 2
mm39_v1_chr1_-_174749379_174749393	0.0009091534938052324	UUGUUCG	ENSMUST00000055294.4|Grem2|ENSMUSG00000050069.4|gremlin 2, DAN family BMP antagonist
mm39_v1_chr7_+_86895851_86895877	0.0008111744281935797	UUGUUCG	ENSMUST00000032781.14|Nox4|ENSMUSG00000030562.18|NADPH oxidase 4
mm39_v1_chr2_+_55327110_55327194	0.0002607202582646363	UUGUUCG	ENSMUST00000112633.3|Kcnj3|ENSMUSG00000026824.12|potassium inwardly-rectifying channel, subfamily J, member 3	ENSMUST00000112632.2|Kcnj3|ENSMUSG00000026824.12|potassium inwardly-rectifying channel, subfamily J, member 3
mm39_v1_chr17_+_27874519_27874542	4.8185339490779564e-05	UUGUUCG	ENSMUST00000045896.11|Pacsin1|ENSMUSG00000040276.16|protein kinase C and casein kinase substrate in neurons 1
