mm39_v1_chr11_-_75313350_75313387	0.7434118055657588	Zkscan3	ENSMUST00000125982.2|Serpinf1|ENSMUSG00000000753.16|serine (or cysteine) peptidase inhibitor, clade F, member 1	ENSMUST00000137103.8|Serpinf1|ENSMUSG00000000753.16|serine (or cysteine) peptidase inhibitor, clade F, member 1
mm39_v1_chr11_-_75313412_75313527	0.6743372921474512	Zkscan3	ENSMUST00000138661.8|Serpinf1|ENSMUSG00000000753.16|serine (or cysteine) peptidase inhibitor, clade F, member 1	ENSMUST00000000769.14|Serpinf1|ENSMUSG00000000753.16|serine (or cysteine) peptidase inhibitor, clade F, member 1
mm39_v1_chr1_-_65162267_65162373	0.43014658691907776	Zkscan3	ENSMUST00000050047.4|D630023F18Rik|ENSMUSG00000044816.11|RIKEN cDNA D630023F18 gene	ENSMUST00000148020.8|D630023F18Rik|ENSMUSG00000044816.11|RIKEN cDNA D630023F18 gene
mm39_v1_chr5_-_100720063_100720111	0.3497728760632938	Zkscan3	ENSMUST00000031264.12|Plac8|ENSMUSG00000029322.13|placenta-specific 8
mm39_v1_chr19_+_6952580_6952683	0.33679581933248326	Zkscan3	ENSMUST00000237084.2|Ppp1r14b|ENSMUSG00000056612.8|protein phosphatase 1, regulatory inhibitor subunit 14B	ENSMUST00000236218.2|Ppp1r14b|ENSMUSG00000056612.8|protein phosphatase 1, regulatory inhibitor subunit 14B	ENSMUST00000237235.2|Ppp1r14b|ENSMUSG00000056612.8|protein phosphatase 1, regulatory inhibitor subunit 14B
mm39_v1_chr13_-_100922910_100923078	0.3052098525751073	Zkscan3	ENSMUST00000174038.2|Ccnb1|ENSMUSG00000041431.17|cyclin B1	ENSMUST00000091295.14|Ccnb1|ENSMUSG00000041431.17|cyclin B1	ENSMUST00000072119.15|Ccnb1|ENSMUSG00000041431.17|cyclin B1
mm39_v1_chr11_-_88742285_88742349	0.29581604993583993	Zkscan3	ENSMUST00000107903.8|Akap1|ENSMUSG00000018428.16|A kinase (PRKA) anchor protein 1
mm39_v1_chr11_-_102255999_102256106	0.29548057543585765	Zkscan3	ENSMUST00000006749.10|Slc4a1|ENSMUSG00000006574.16|solute carrier family 4 (anion exchanger), member 1
mm39_v1_chrX_-_17437801_17437880	0.28777601948052395	Zkscan3	ENSMUST00000177213.8|Fundc1|ENSMUSG00000025040.14|FUN14 domain containing 1
mm39_v1_chr2_+_103900164_103900236	0.27665763754227296	Zkscan3	ENSMUST00000111131.9|Cd59b|ENSMUSG00000068686.13|CD59b antigen	ENSMUST00000111132.8|Cd59b|ENSMUSG00000068686.13|CD59b antigen	ENSMUST00000129749.8|Cd59b|ENSMUSG00000068686.13|CD59b antigen
mm39_v1_chr7_-_141936355_141936457	0.2502855436627559	Zkscan3	ENSMUST00000133843.8|Gm49369|ENSMUSG00000110040.2|predicted gene, 49369
mm39_v1_chr13_-_19579898_19579959	0.2445517026400446	Zkscan3	ENSMUST00000197565.3|Stard3nl|ENSMUSG00000003062.14|STARD3 N-terminal like	ENSMUST00000221380.2|Stard3nl|ENSMUSG00000003062.14|STARD3 N-terminal like	ENSMUST00000200323.3|Stard3nl|ENSMUSG00000003062.14|STARD3 N-terminal like	ENSMUST00000199924.2|Stard3nl|ENSMUSG00000003062.14|STARD3 N-terminal like	ENSMUST00000222869.2|Stard3nl|ENSMUSG00000003062.14|STARD3 N-terminal like
mm39_v1_chr6_+_127430668_127430686	0.23321998975514627	Zkscan3	ENSMUST00000039680.7|Parp11|ENSMUSG00000037997.13|poly (ADP-ribose) polymerase family, member 11
mm39_v1_chr12_+_33004178_33004277	0.22525660205881343	Zkscan3	ENSMUST00000020885.13|Sypl|ENSMUSG00000020570.16|synaptophysin-like protein
mm39_v1_chr2_+_31560725_31560754	0.22257446283476487	Zkscan3	ENSMUST00000038474.14|Exosc2|ENSMUSG00000039356.16|exosome component 2	ENSMUST00000137156.2|Exosc2|ENSMUSG00000039356.16|exosome component 2
mm39_v1_chr13_+_73615316_73615435	0.21800084386221516	Zkscan3	ENSMUST00000022099.15|Lpcat1|ENSMUSG00000021608.16|lysophosphatidylcholine acyltransferase 1
mm39_v1_chr8_+_125624615_125624640	0.20494972659993307	Zkscan3	ENSMUST00000034467.7|Sprtn|ENSMUSG00000031986.7|SprT-like N-terminal domain
mm39_v1_chr5_+_24791719_24791792	0.20002379070119658	Zkscan3	ENSMUST00000088295.9|Chpf2|ENSMUSG00000038181.17|chondroitin polymerizing factor 2	ENSMUST00000121863.5|Chpf2|ENSMUSG00000038181.17|chondroitin polymerizing factor 2
mm39_v1_chr4_+_156110621_156110829	0.19215097347052204	Zkscan3	ENSMUST00000103173.10|Tnfrsf18|ENSMUSG00000041954.19|tumor necrosis factor receptor superfamily, member 18	ENSMUST00000040274.13|Tnfrsf18|ENSMUSG00000041954.19|tumor necrosis factor receptor superfamily, member 18	ENSMUST00000122001.3|Tnfrsf18|ENSMUSG00000041954.19|tumor necrosis factor receptor superfamily, member 18
mm39_v1_chr5_-_88823472_88823529	0.18001616148285352	Zkscan3	ENSMUST00000113234.8|Grsf1|ENSMUSG00000044221.15|G-rich RNA sequence binding factor 1	ENSMUST00000153565.8|Grsf1|ENSMUSG00000044221.15|G-rich RNA sequence binding factor 1
mm39_v1_chr1_-_185061525_185061603	0.17404257955229815	Zkscan3	ENSMUST00000027921.11|Iars2|ENSMUSG00000026618.12|isoleucine-tRNA synthetase 2, mitochondrial	ENSMUST00000110975.8|Iars2|ENSMUSG00000026618.12|isoleucine-tRNA synthetase 2, mitochondrial	ENSMUST00000110974.4|Iars2|ENSMUSG00000026618.12|isoleucine-tRNA synthetase 2, mitochondrial
mm39_v1_chrX_-_17438520_17438564	0.17365863801172624	Zkscan3	ENSMUST00000026016.13|Fundc1|ENSMUSG00000025040.14|FUN14 domain containing 1
mm39_v1_chr5_+_24791796_24791823	0.16534147451767237	Zkscan3	ENSMUST00000197318.2|Chpf2|ENSMUSG00000038181.17|chondroitin polymerizing factor 2
mm39_v1_chr17_-_35984409_35984591	0.1618847125103209	Zkscan3	ENSMUST00000162266.8|Gtf2h4|ENSMUSG00000001524.15|general transcription factor II H, polypeptide 4	ENSMUST00000160734.8|Gtf2h4|ENSMUSG00000001524.15|general transcription factor II H, polypeptide 4	ENSMUST00000159852.2|Gtf2h4|ENSMUSG00000001524.15|general transcription factor II H, polypeptide 4	ENSMUST00000160039.8|Gtf2h4|ENSMUSG00000001524.15|general transcription factor II H, polypeptide 4
mm39_v1_chr18_-_34784746_34784794	0.16142898272029146	Zkscan3	ENSMUST00000025228.12|Cdc23|ENSMUSG00000024370.18|CDC23 cell division cycle 23	ENSMUST00000133181.2|Cdc23|ENSMUSG00000024370.18|CDC23 cell division cycle 23
mm39_v1_chr8_+_107620251_107620328	0.16142662205469757	Zkscan3	ENSMUST00000212272.2|Utp4|ENSMUSG00000041438.9|UTP4 small subunit processome component	ENSMUST00000047629.7|Utp4|ENSMUSG00000041438.9|UTP4 small subunit processome component
mm39_v1_chr2_-_103609703_103609746	0.16139771999713404	Zkscan3	ENSMUST00000143188.2|Caprin1|ENSMUSG00000027184.15|cell cycle associated protein 1
mm39_v1_chr1_+_180770064_180770139	0.15443499548435632	Zkscan3	ENSMUST00000159436.8|Tmem63a|ENSMUSG00000026519.17|transmembrane protein 63a
mm39_v1_chr7_-_19297001_19297001	0.15378424623511613	Zkscan3	ENSMUST00000058444.10|Ppp1r37|ENSMUSG00000051403.10|protein phosphatase 1, regulatory subunit 37
mm39_v1_chr1_+_58834621_58834717	0.1474366532077031	Zkscan3	ENSMUST00000191201.7|Casp8|ENSMUSG00000026029.15|caspase 8
mm39_v1_chr2_-_30084124_30084156	0.12593020923720502	Zkscan3	ENSMUST00000113659.8|Kyat1|ENSMUSG00000039648.15|kynurenine aminotransferase 1	ENSMUST00000113660.2|Kyat1|ENSMUSG00000039648.15|kynurenine aminotransferase 1
mm39_v1_chr7_+_101545547_101545638	0.12491873979547016	Zkscan3	ENSMUST00000035395.14|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15	ENSMUST00000106973.8|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15	ENSMUST00000144207.9|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15
mm39_v1_chr13_-_19579961_19579967	0.1235176965821727	Zkscan3	ENSMUST00000039694.13|Stard3nl|ENSMUSG00000003062.14|STARD3 N-terminal like
mm39_v1_chr5_-_88823049_88823101	0.12312576156210614	Zkscan3	ENSMUST00000133532.8|Grsf1|ENSMUSG00000044221.15|G-rich RNA sequence binding factor 1	ENSMUST00000150438.2|Grsf1|ENSMUSG00000044221.15|G-rich RNA sequence binding factor 1
mm39_v1_chr8_+_34222266_34222367	0.10724089287264701	Zkscan3	ENSMUST00000190675.2|Gtf2e2|ENSMUSG00000031585.14|general transcription factor II E, polypeptide 2 (beta subunit)	ENSMUST00000171010.8|Gtf2e2|ENSMUSG00000031585.14|general transcription factor II E, polypeptide 2 (beta subunit)
mm39_v1_chr3_-_129518723_129518751	0.09599634298090384	Zkscan3	ENSMUST00000199615.5|Egf|ENSMUSG00000028017.8|epidermal growth factor	ENSMUST00000197079.5|Egf|ENSMUSG00000028017.8|epidermal growth factor
mm39_v1_chr13_-_38842967_38843034	0.09333058793304415	Zkscan3	ENSMUST00000001757.9|Eef1e1|ENSMUSG00000001707.9|eukaryotic translation elongation factor 1 epsilon 1
mm39_v1_chr1_-_40829801_40829850	0.08918342089907759	Zkscan3	ENSMUST00000039672.6|Mfsd9|ENSMUSG00000041945.13|major facilitator superfamily domain containing 9
mm39_v1_chr6_+_125048230_125048252	0.08403366827999968	Zkscan3	ENSMUST00000140346.9|Lpar5|ENSMUSG00000067714.14|lysophosphatidic acid receptor 5	ENSMUST00000171989.3|Lpar5|ENSMUSG00000067714.14|lysophosphatidic acid receptor 5
mm39_v1_chr4_-_62438122_62438204	0.0778641265157415	Zkscan3	ENSMUST00000107444.8|Alad|ENSMUSG00000028393.11|aminolevulinate, delta-, dehydratase	ENSMUST00000030090.4|Alad|ENSMUSG00000028393.11|aminolevulinate, delta-, dehydratase
mm39_v1_chr6_-_113696809_113696844	0.07660063866909594	Zkscan3	ENSMUST00000203770.3|Ghrl|ENSMUSG00000064177.9|ghrelin	ENSMUST00000064993.8|Ghrl|ENSMUSG00000064177.9|ghrelin
mm39_v1_chr6_+_125529911_125529943	0.06870826155050729	Zkscan3	ENSMUST00000112254.8|Vwf|ENSMUSG00000001930.18|Von Willebrand factor	ENSMUST00000112253.6|Vwf|ENSMUSG00000001930.18|Von Willebrand factor
mm39_v1_chr8_-_107620210_107620241	0.06814373905673303	Zkscan3	ENSMUST00000177068.8|Chtf8|ENSMUSG00000046691.15|CTF8, chromosome transmission fidelity factor 8	ENSMUST00000169312.2|Derpc|ENSMUSG00000117748.2|DERPC proline and glycine rich nuclear protein	ENSMUST00000176515.2|Chtf8|ENSMUSG00000046691.15|CTF8, chromosome transmission fidelity factor 8
mm39_v1_chr17_-_34736326_34736326	0.06795650104081757	Zkscan3	ENSMUST00000075483.5|Btnl6|ENSMUSG00000092618.3|butyrophilin-like 6
mm39_v1_chr6_-_43643093_43643212	0.06781859432578692	Zkscan3	ENSMUST00000114644.8|Tpk1|ENSMUSG00000029735.18|thiamine pyrophosphokinase	ENSMUST00000067888.14|Tpk1|ENSMUSG00000029735.18|thiamine pyrophosphokinase
mm39_v1_chr11_+_87295860_87295940	0.06747174469889718	Zkscan3	ENSMUST00000060835.12|Tex14|ENSMUSG00000010342.17|testis expressed gene 14
mm39_v1_chr13_-_64514830_64514909	0.0658593930072111	Zkscan3	ENSMUST00000222971.2|Ctsl|ENSMUSG00000021477.10|cathepsin L
mm39_v1_chr15_-_4008913_4009055	0.06565530776709626	Zkscan3	ENSMUST00000022791.9|Fbxo4|ENSMUSG00000022184.9|F-box protein 4
mm39_v1_chr5_+_118114826_118114868	0.06542170253285587	Zkscan3	ENSMUST00000035579.10|Fbxo21|ENSMUSG00000032898.10|F-box protein 21
mm39_v1_chr16_-_16176729_16176873	0.062448001913746644	Zkscan3	ENSMUST00000230980.2|Dnm1l|ENSMUSG00000022789.16|dynamin 1-like	ENSMUST00000096229.11|Dnm1l|ENSMUSG00000022789.16|dynamin 1-like	ENSMUST00000230038.2|Dnm1l|ENSMUSG00000022789.16|dynamin 1-like	ENSMUST00000023477.15|Dnm1l|ENSMUSG00000022789.16|dynamin 1-like
mm39_v1_chr7_+_19144950_19145026	0.053844350043722164	Zkscan3	ENSMUST00000208710.2|Ckm|ENSMUSG00000030399.3|creatine kinase, muscle	ENSMUST00000003643.3|Ckm|ENSMUSG00000030399.3|creatine kinase, muscle
mm39_v1_chr13_-_65260716_65260803	0.052803591447797	Zkscan3	ENSMUST00000054730.10|Mfsd14b|ENSMUSG00000038212.17|major facilitator superfamily domain containing 14B	ENSMUST00000155487.8|Mfsd14b|ENSMUSG00000038212.17|major facilitator superfamily domain containing 14B
mm39_v1_chr2_+_121001683_121001760	0.05242140372015995	Zkscan3	ENSMUST00000186659.7|Tubgcp4|ENSMUSG00000027263.13|tubulin, gamma complex associated protein 4	ENSMUST00000039541.12|Tubgcp4|ENSMUSG00000027263.13|tubulin, gamma complex associated protein 4	ENSMUST00000110657.2|Tubgcp4|ENSMUSG00000027263.13|tubulin, gamma complex associated protein 4
mm39_v1_chr17_-_34694911_34694911	0.04948697823169277	Zkscan3	ENSMUST00000065841.5|Btnl4|ENSMUSG00000058435.7|butyrophilin-like 4
mm39_v1_chr4_+_101944740_101944906	0.047697858795591186	Zkscan3	ENSMUST00000106911.8|Pde4b|ENSMUSG00000028525.17|phosphodiesterase 4B, cAMP specific
mm39_v1_chr17_+_46421908_46421948	0.04750920111244779	Zkscan3	ENSMUST00000024763.10|Mrps18a|ENSMUSG00000023967.10|mitochondrial ribosomal protein S18A	ENSMUST00000123646.2|Mrps18a|ENSMUSG00000023967.10|mitochondrial ribosomal protein S18A
mm39_v1_chr5_+_120787253_120787325	0.04613083042967215	Zkscan3	ENSMUST00000156722.2|Rasal1|ENSMUSG00000029602.12|RAS protein activator like 1 (GAP1 like)
mm39_v1_chr1_+_160806194_160806226	0.04406886039037065	Zkscan3	ENSMUST00000064725.11|Serpinc1|ENSMUSG00000026715.13|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	ENSMUST00000191936.2|Serpinc1|ENSMUSG00000026715.13|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
mm39_v1_chr6_+_116327853_116327898	0.04199877387585861	Zkscan3	ENSMUST00000140884.8|Marchf8|ENSMUSG00000025702.16|membrane associated ring-CH-type finger 8	ENSMUST00000129170.8|Marchf8|ENSMUSG00000025702.16|membrane associated ring-CH-type finger 8
mm39_v1_chr12_+_112555656_112555701	0.04014575393351245	Zkscan3	ENSMUST00000220786.2|Inf2|ENSMUSG00000037679.10|inverted formin, FH2 and WH2 domain containing
mm39_v1_chr11_-_102109748_102109761	0.03421277222831892	Zkscan3	ENSMUST00000131254.2|Hdac5|ENSMUSG00000008855.18|histone deacetylase 5
mm39_v1_chr2_+_155617251_155617313	0.030159416488953227	Zkscan3	ENSMUST00000029141.6|Mmp24|ENSMUSG00000027612.8|matrix metallopeptidase 24
mm39_v1_chr7_-_97827461_97827481	0.027414366410789117	Zkscan3	ENSMUST00000040971.14|Capn5|ENSMUSG00000035547.15|calpain 5
mm39_v1_chr10_+_80465481_80465490	0.024931525694531435	Zkscan3	ENSMUST00000085435.7|Csnk1g2|ENSMUSG00000003345.17|casein kinase 1, gamma 2
mm39_v1_chr9_+_114517812_114517881	0.020507351961033655	Zkscan3	ENSMUST00000047404.7|Dync1li1|ENSMUSG00000032435.10|dynein cytoplasmic 1 light intermediate chain 1
mm39_v1_chr14_-_32407203_32407271	0.019667736645407028	Zkscan3	ENSMUST00000096038.4|3425401B19Rik|ENSMUSG00000071540.5|RIKEN cDNA 3425401B19 gene
mm39_v1_chr1_+_180770016_180770054	0.018217481079432652	Zkscan3	ENSMUST00000027800.15|Tmem63a|ENSMUSG00000026519.17|transmembrane protein 63a
mm39_v1_chr18_+_67933169_67933221	0.017654324178880774	Zkscan3	ENSMUST00000025425.7|Cep192|ENSMUSG00000024542.10|centrosomal protein 192
mm39_v1_chr1_-_128256048_128256063	0.016857411750905455	Zkscan3	ENSMUST00000073490.7|Lct|ENSMUSG00000026354.9|lactase
mm39_v1_chr17_-_35984625_35984643	0.016182922885823223	Zkscan3	ENSMUST00000001565.15|Gtf2h4|ENSMUSG00000001524.15|general transcription factor II H, polypeptide 4
mm39_v1_chr11_-_99700718_99700718	0.014240952747606513	Zkscan3	ENSMUST00000050106.5|Krtap4-13|ENSMUSG00000048294.5|keratin associated protein 4-13
mm39_v1_chr13_+_42862957_42863057	0.012970835849989664	Zkscan3	ENSMUST00000066928.12|Phactr1|ENSMUSG00000054728.18|phosphatase and actin regulator 1	ENSMUST00000148891.8|Phactr1|ENSMUSG00000054728.18|phosphatase and actin regulator 1
mm39_v1_chr11_-_99689758_99689758	0.010598876043235306	Zkscan3	ENSMUST00000105057.2|Gm11569|ENSMUSG00000078260.2|predicted gene 11569
mm39_v1_chrX_+_162923474_162923614	0.010264354835341709	Zkscan3	ENSMUST00000073973.11|Ace2|ENSMUSG00000015405.16|angiotensin I converting enzyme (peptidyl-dipeptidase A) 2
mm39_v1_chr10_+_81164552_81164574	0.009945388925979477	Zkscan3	ENSMUST00000105325.4|Tbxa2r|ENSMUSG00000034881.9|thromboxane A2 receptor	ENSMUST00000220312.2|Tbxa2r|ENSMUSG00000034881.9|thromboxane A2 receptor
mm39_v1_chr11_-_99695272_99695272	0.009939128703948604	Zkscan3	ENSMUST00000105056.2|Gm11554|ENSMUSG00000078259.4|predicted gene 11554
mm39_v1_chr3_+_87458556_87458556	0.00992741194505818	Zkscan3	ENSMUST00000238853.2|Etv3l|ENSMUSG00000118505.2|ets variant 3-like
mm39_v1_chr2_+_32536594_32536650	0.009707650583389729	Zkscan3	ENSMUST00000113272.8|Eng|ENSMUSG00000026814.17|endoglin	ENSMUST00000009705.14|Eng|ENSMUSG00000026814.17|endoglin	ENSMUST00000167841.8|Eng|ENSMUSG00000026814.17|endoglin
mm39_v1_chr6_+_149041289_149041347	0.007396981341871024	Zkscan3	ENSMUST00000126406.8|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase
mm39_v1_chr5_+_53424471_53424531	0.005196207596827444	Zkscan3	ENSMUST00000147148.5|Smim20|ENSMUSG00000061461.12|small integral membrane protein 20
mm39_v1_chr1_-_173161069_173161088	0.0032379581247682474	Zkscan3	ENSMUST00000038227.6|Ackr1|ENSMUSG00000037872.6|atypical chemokine receptor 1 (Duffy blood group)
mm39_v1_chr10_+_75404482_75404508	0.0021301478203944444	Zkscan3	ENSMUST00000134503.8|Ggt1|ENSMUSG00000006345.11|gamma-glutamyltransferase 1	ENSMUST00000125770.8|Ggt1|ENSMUSG00000006345.11|gamma-glutamyltransferase 1	ENSMUST00000128886.8|Ggt1|ENSMUSG00000006345.11|gamma-glutamyltransferase 1	ENSMUST00000151212.8|Ggt1|ENSMUSG00000006345.11|gamma-glutamyltransferase 1
mm39_v1_chr14_-_52648384_52648384	0.0006568418068264457	Zkscan3	ENSMUST00000079459.4|Olfr1510|ENSMUSG00000063106.7|olfactory receptor 1510
mm39_v1_chr4_+_15957923_15958005	0.0005615932930076521	Zkscan3	ENSMUST00000029879.15|Nbn|ENSMUSG00000028224.15|nibrin	ENSMUST00000149069.2|Nbn|ENSMUSG00000028224.15|nibrin
mm39_v1_chr19_+_6326755_6326823	9.136184255614266e-05	Zkscan3	ENSMUST00000025684.4|Ehd1|ENSMUSG00000024772.10|EH-domain containing 1
