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2D miR_HR1_12

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Results for Msx3

Z-value: 0.59

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Transcription factors associated with Msx3

Gene Symbol Gene ID Gene Info
ENSMUSG00000025469.9 msh homeobox 3

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Msx3mm10_v2_chr7_-_140049083_1400490890.632.7e-02Click!

Activity profile of Msx3 motif

Sorted Z-values of Msx3 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr2_-_33087169 1.40 ENSMUST00000102810.3
GTPase activating RANGAP domain-like 3
chr2_-_33086366 1.20 ENSMUST00000049618.2
GTPase activating RANGAP domain-like 3
chr8_+_57511833 1.01 ENSMUST00000067925.6
high mobility group box 2
chr7_+_101896817 0.73 ENSMUST00000143835.1
anaphase prompoting complex C subunit 15
chr2_-_20943413 0.71 ENSMUST00000140230.1
Rho GTPase activating protein 21
chr1_-_158356258 0.61 ENSMUST00000004133.8
bone morphogenic protein/retinoic acid inducible neural-specific 2
chr8_-_41215146 0.59 ENSMUST00000034003.4
fibrinogen-like protein 1
chr7_+_101896340 0.58 ENSMUST00000035395.7
ENSMUST00000106973.1
ENSMUST00000144207.1
anaphase prompoting complex C subunit 15
chr17_+_56613392 0.56 ENSMUST00000080492.5
ribosomal protein L36
chr1_+_34439851 0.52 ENSMUST00000027303.7
IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)
chr15_+_82252397 0.47 ENSMUST00000136948.1
RIKEN cDNA 1500009C09 gene
chr7_-_127895578 0.42 ENSMUST00000033074.6
vitamin K epoxide reductase complex, subunit 1
chrM_+_9452 0.41 ENSMUST00000082411.1
mitochondrially encoded NADH dehydrogenase 3
chr12_-_71136611 0.41 ENSMUST00000021486.8
ENSMUST00000166120.1
translocase of inner mitochondrial membrane 9
chr18_+_4993795 0.40 ENSMUST00000153016.1
supervillin
chr1_-_52190901 0.39 ENSMUST00000156887.1
ENSMUST00000129107.1
glutaminase
chr13_-_58354862 0.36 ENSMUST00000043605.5
kinesin family member 27
chr11_+_70018421 0.35 ENSMUST00000108588.1
discs, large homolog 4 (Drosophila)
chrM_+_7005 0.35 ENSMUST00000082405.1
mitochondrially encoded cytochrome c oxidase II
chr17_+_49615104 0.33 ENSMUST00000162854.1
kinesin family member 6
chr9_+_44398176 0.31 ENSMUST00000165839.1
solute carrier family 37 (glucose-6-phosphate transporter), member 4
chr13_+_67863324 0.31 ENSMUST00000078471.5
cDNA sequence BC048507
chrX_+_16619698 0.31 ENSMUST00000026013.5
monoamine oxidase A
chrX_+_9885622 0.31 ENSMUST00000067529.2
ENSMUST00000086165.3
synaptotagmin-like 5
chr15_+_44787746 0.30 ENSMUST00000181839.1
RIKEN cDNA 2310069G16 gene
chrX_+_107255878 0.28 ENSMUST00000101294.2
ENSMUST00000118820.1
ENSMUST00000120971.1
G protein-coupled receptor 174
chr9_+_72806874 0.27 ENSMUST00000055535.8
protogenin homolog (Gallus gallus)
chr9_+_35423582 0.26 ENSMUST00000154652.1
cell adhesion molecule-related/down-regulated by oncogenes
chr10_+_88379217 0.24 ENSMUST00000130301.1
ENSMUST00000020251.8
N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
chr7_+_45621805 0.23 ENSMUST00000033100.4
izumo sperm-egg fusion 1
chr9_+_96258697 0.23 ENSMUST00000179416.1
transcription factor Dp 2
chr3_+_66985700 0.22 ENSMUST00000046542.6
ENSMUST00000162693.1
arginine/serine-rich coiled-coil 1
chr10_+_88379127 0.21 ENSMUST00000127615.1
N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
chr15_-_34356421 0.21 ENSMUST00000179647.1
RIKEN cDNA 9430069I07 gene
chrM_+_9870 0.20 ENSMUST00000084013.1
mitochondrially encoded NADH dehydrogenase 4L
chr12_+_71136848 0.18 ENSMUST00000149564.1
ENSMUST00000045907.8
RIKEN cDNA 2700049A03 gene
chr5_+_92809372 0.18 ENSMUST00000113054.2
shroom family member 3
chr6_+_145934113 0.15 ENSMUST00000032383.7
sarcospan
chr3_-_116253467 0.15 ENSMUST00000090473.5
G-protein coupled receptor 88
chr3_+_66985647 0.15 ENSMUST00000162362.1
ENSMUST00000065074.7
arginine/serine-rich coiled-coil 1
chr9_+_100597686 0.15 ENSMUST00000124487.1
stromal antigen 1
chr3_+_32515295 0.15 ENSMUST00000029203.7
zinc finger protein 639
chr5_-_62766153 0.14 ENSMUST00000076623.4
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
chr5_+_14514918 0.13 ENSMUST00000030691.10
ENSMUST00000182407.1
piccolo (presynaptic cytomatrix protein)
chr10_+_81257277 0.12 ENSMUST00000117488.1
ENSMUST00000105328.3
ENSMUST00000121205.1
megakaryocyte-associated tyrosine kinase
chr15_+_38661904 0.12 ENSMUST00000022904.6
ATPase, H+ transporting, lysosomal V1 subunit C1
chrX_-_143933089 0.12 ENSMUST00000087313.3
doublecortin
chr10_-_116896879 0.11 ENSMUST00000048229.7
myelin regulatory factor-like
chr4_-_58912678 0.11 ENSMUST00000144512.1
ENSMUST00000102889.3
ENSMUST00000055822.8
expressed sequence AI314180
chr5_+_104202609 0.11 ENSMUST00000066708.5
dentin matrix protein 1
chr3_+_94837702 0.11 ENSMUST00000107266.1
ENSMUST00000042402.5
ENSMUST00000107269.1
pogo transposable element with ZNF domain
chr2_+_163658370 0.11 ENSMUST00000164399.1
ENSMUST00000064703.6
ENSMUST00000099105.2
ENSMUST00000152418.1
ENSMUST00000126182.1
ENSMUST00000131228.1
protein kinase inhibitor, gamma
chr11_+_53433299 0.10 ENSMUST00000018382.6
growth differentiation factor 9
chr3_+_66985947 0.10 ENSMUST00000161726.1
ENSMUST00000160504.1
arginine/serine-rich coiled-coil 1
chr1_-_172027269 0.10 ENSMUST00000027837.6
ENSMUST00000111264.1
vang-like 2 (van gogh, Drosophila)
chr6_+_8948608 0.10 ENSMUST00000160300.1
neurexophilin 1
chr11_+_116843278 0.10 ENSMUST00000106370.3
methyltransferase like 23
chr3_+_94837533 0.10 ENSMUST00000107270.2
pogo transposable element with ZNF domain
chr6_+_134640940 0.08 ENSMUST00000062755.8
loss of heterozygosity, 12, chromosomal region 1 homolog (human)
chr2_+_121956651 0.06 ENSMUST00000110574.1
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
chr3_+_83055516 0.06 ENSMUST00000150268.1
ENSMUST00000122128.1
pleiotropic regulator 1, PRL1 homolog (Arabidopsis)
chr3_+_66985680 0.05 ENSMUST00000065047.6
arginine/serine-rich coiled-coil 1
chr3_-_41742471 0.05 ENSMUST00000026866.8
sodium channel and clathrin linker 1
chr8_+_72219726 0.04 ENSMUST00000003123.8
family with sequence similarity 32, member A
chr4_-_129378116 0.03 ENSMUST00000030610.2
zinc finger and BTB domain containing 8a

Network of associatons between targets according to the STRING database.

First level regulatory network of Msx3

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 GO:0016256 N-glycan processing to lysosome(GO:0016256)
0.1 1.0 GO:0045654 positive regulation of megakaryocyte differentiation(GO:0045654)
0.1 0.4 GO:0017187 peptidyl-glutamic acid carboxylation(GO:0017187) protein carboxylation(GO:0018214)
0.1 0.6 GO:0051684 maintenance of Golgi location(GO:0051684)
0.1 1.3 GO:1903504 regulation of mitotic cell cycle spindle assembly checkpoint(GO:0090266) regulation of mitotic spindle checkpoint(GO:1903504)
0.1 0.4 GO:0045039 protein import into mitochondrial inner membrane(GO:0045039)
0.1 0.4 GO:0006543 glutamine catabolic process(GO:0006543)
0.1 0.3 GO:0035166 hexose phosphate transport(GO:0015712) glucose-6-phosphate transport(GO:0015760) post-embryonic hemopoiesis(GO:0035166)
0.1 0.3 GO:0042420 dopamine catabolic process(GO:0042420)
0.0 0.1 GO:0098928 presynaptic signal transduction(GO:0098928) presynapse to nucleus signaling pathway(GO:0099526)
0.0 0.3 GO:0014816 skeletal muscle satellite cell differentiation(GO:0014816)
0.0 0.1 GO:0060488 orthogonal dichotomous subdivision of terminal units involved in lung branching morphogenesis(GO:0060488) planar dichotomous subdivision of terminal units involved in lung branching morphogenesis(GO:0060489) lateral sprouting involved in lung morphogenesis(GO:0060490)
0.0 0.4 GO:0098953 receptor diffusion trapping(GO:0098953) postsynaptic neurotransmitter receptor diffusion trapping(GO:0098970) neurotransmitter receptor diffusion trapping(GO:0099628)
0.0 0.3 GO:2000582 positive regulation of microtubule motor activity(GO:2000576) regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000580) positive regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000582)
0.0 0.6 GO:0035634 response to stilbenoid(GO:0035634)
0.0 0.1 GO:2000870 regulation of progesterone secretion(GO:2000870)
0.0 0.2 GO:0007342 fusion of sperm to egg plasma membrane(GO:0007342)
0.0 0.4 GO:0003351 epithelial cilium movement(GO:0003351)
0.0 0.1 GO:0043922 negative regulation by host of viral transcription(GO:0043922)
0.0 0.2 GO:0051382 kinetochore assembly(GO:0051382)
0.0 0.5 GO:0046677 response to antibiotic(GO:0046677)
0.0 0.6 GO:0071300 cellular response to retinoic acid(GO:0071300)
0.0 0.1 GO:0070170 enamel mineralization(GO:0070166) regulation of tooth mineralization(GO:0070170)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 GO:0034457 Mpp10 complex(GO:0034457)
0.1 0.4 GO:0042719 mitochondrial intermembrane space protein transporter complex(GO:0042719)
0.1 1.3 GO:0005680 anaphase-promoting complex(GO:0005680)
0.0 0.1 GO:0044317 rod spherule(GO:0044317)
0.0 0.1 GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain(GO:0000221)
0.0 0.1 GO:0060187 cell pole(GO:0060187)
0.0 0.3 GO:0005751 mitochondrial respiratory chain complex IV(GO:0005751)
0.0 0.4 GO:0044224 juxtaparanode region of axon(GO:0044224)
0.0 0.3 GO:0001673 male germ cell nucleus(GO:0001673)
0.0 0.6 GO:0005747 mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 GO:0030519 snoRNP binding(GO:0030519)
0.1 1.0 GO:0050786 RAGE receptor binding(GO:0050786)
0.1 0.5 GO:0003976 UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity(GO:0003976)
0.1 0.3 GO:0015526 hexose phosphate transmembrane transporter activity(GO:0015119) organophosphate:inorganic phosphate antiporter activity(GO:0015315) hexose-phosphate:inorganic phosphate antiporter activity(GO:0015526) glucose 6-phosphate:inorganic phosphate antiporter activity(GO:0061513)
0.1 0.4 GO:0004359 glutaminase activity(GO:0004359)
0.0 0.4 GO:0031812 G-protein coupled nucleotide receptor binding(GO:0031811) P2Y1 nucleotide receptor binding(GO:0031812)
0.0 0.3 GO:0008131 primary amine oxidase activity(GO:0008131)
0.0 0.4 GO:0048038 quinone binding(GO:0048038)
0.0 0.2 GO:0086080 protein binding involved in heterotypic cell-cell adhesion(GO:0086080)
0.0 0.6 GO:0050136 NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136)
0.0 0.7 GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574)
0.0 0.3 GO:0045125 bioactive lipid receptor activity(GO:0045125)
0.0 0.3 GO:0016676 cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.0 REACTOME APOPTOSIS INDUCED DNA FRAGMENTATION Genes involved in Apoptosis induced DNA fragmentation
0.0 0.4 REACTOME GLUTAMATE NEUROTRANSMITTER RELEASE CYCLE Genes involved in Glutamate Neurotransmitter Release Cycle
0.0 0.4 REACTOME GAMMA CARBOXYLATION TRANSPORT AND AMINO TERMINAL CLEAVAGE OF PROTEINS Genes involved in Gamma-carboxylation, transport, and amino-terminal cleavage of proteins
0.0 0.3 REACTOME NOREPINEPHRINE NEUROTRANSMITTER RELEASE CYCLE Genes involved in Norepinephrine Neurotransmitter Release Cycle