Project

2D miR_HR1_12

Navigation
Downloads

Results for Hoxd9

Z-value: 0.40

Motif logo

Transcription factors associated with Hoxd9

Gene Symbol Gene ID Gene Info
ENSMUSG00000043342.8 homeobox D9

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Hoxd9mm10_v2_chr2_+_74697663_746976800.146.7e-01Click!

Activity profile of Hoxd9 motif

Sorted Z-values of Hoxd9 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr1_+_180111339 0.34 ENSMUST00000145181.1
CDC42 binding protein kinase alpha
chr1_-_128328311 0.31 ENSMUST00000073490.6
lactase
chr6_-_147243794 0.22 ENSMUST00000153786.1
predicted gene 15767
chr19_+_23723279 0.22 ENSMUST00000067077.1
predicted gene 9938
chr2_+_14174513 0.21 ENSMUST00000077517.7
transmembrane protein 236
chr1_-_82768449 0.20 ENSMUST00000027331.2
transmembrane 4 L six family member 20
chr8_-_68121527 0.19 ENSMUST00000178529.1
predicted gene, 21807
chr15_-_58364148 0.18 ENSMUST00000068515.7
annexin A13
chr1_+_88211956 0.18 ENSMUST00000073049.6
UDP glucuronosyltransferase 1 family, polypeptide A1
chr6_-_40951826 0.17 ENSMUST00000073642.5
predicted gene 4744
chr17_-_40880525 0.16 ENSMUST00000068258.2
RIKEN cDNA 9130008F23 gene
chr12_+_8012359 0.15 ENSMUST00000171239.1
apolipoprotein B
chr1_-_86111970 0.15 ENSMUST00000027431.6
5-hydroxytryptamine (serotonin) receptor 2B
chr9_+_7347374 0.15 ENSMUST00000065079.5
ENSMUST00000005950.5
matrix metallopeptidase 12
chr8_+_107119110 0.14 ENSMUST00000046116.1
RIKEN cDNA C630050I24 gene
chr1_-_130452416 0.13 ENSMUST00000140400.1
CD55 antigen
chr1_-_139377094 0.13 ENSMUST00000131586.1
ENSMUST00000145244.1
crumbs homolog 1 (Drosophila)
chr13_+_58281183 0.13 ENSMUST00000180882.1
ENSMUST00000180452.1
predicted gene, 26555
chr19_-_56548013 0.12 ENSMUST00000182059.1
DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
chr2_+_43748802 0.11 ENSMUST00000112824.1
ENSMUST00000055776.7
Rho GTPase activating protein 15
chr6_+_122553799 0.11 ENSMUST00000043301.7
activation-induced cytidine deaminase
chr5_-_43235352 0.11 ENSMUST00000140650.2
predicted gene 7854
chr16_-_23029012 0.11 ENSMUST00000039338.6
kininogen 2
chr1_-_168432270 0.10 ENSMUST00000072863.4
pre B cell leukemia homeobox 1
chr1_-_163289214 0.09 ENSMUST00000183691.1
paired related homeobox 1
chr7_+_121707189 0.09 ENSMUST00000065310.2
RIKEN cDNA 1700069B07 gene
chr5_-_87424201 0.09 ENSMUST00000072818.5
UDP glucuronosyltransferase 2 family, polypeptide B38
chr11_-_109472611 0.09 ENSMUST00000168740.1
solute carrier family 16 (monocarboxylic acid transporters), member 6
chr17_-_35910032 0.09 ENSMUST00000141662.1
ENSMUST00000056034.6
ENSMUST00000077494.6
ENSMUST00000149277.1
ENSMUST00000061052.5
alpha tubulin acetyltransferase 1
chr13_-_74376566 0.09 ENSMUST00000091481.2
zinc finger protein 72
chr1_-_97761538 0.09 ENSMUST00000171129.1
diphosphoinositol pentakisphosphate kinase 2
chr3_+_138415484 0.09 ENSMUST00000161312.1
ENSMUST00000013458.8
alcohol dehydrogenase 4 (class II), pi polypeptide
chr10_-_19014549 0.09 ENSMUST00000146388.1
tumor necrosis factor, alpha-induced protein 3
chr12_+_38783503 0.08 ENSMUST00000159334.1
ets variant gene 1
chr17_+_47649621 0.08 ENSMUST00000145314.1
ubiquitin specific peptidase 49
chr3_+_35754121 0.08 ENSMUST00000108186.1
ENSMUST00000029257.8
ATPase, class VI, type 11B
chr9_-_18385981 0.08 ENSMUST00000166825.1
N-acetylated alpha-linked acidic dipeptidase 2
chr16_-_50330987 0.08 ENSMUST00000114488.1
bobby sox homolog (Drosophila)
chr16_-_23029080 0.07 ENSMUST00000100046.2
kininogen 2
chr11_+_29373618 0.07 ENSMUST00000040182.6
ENSMUST00000109477.1
coiled coil domain containing 88A
chr16_-_79091078 0.07 ENSMUST00000023566.4
ENSMUST00000060402.5
transmembrane protease, serine 15
chr8_-_41016295 0.07 ENSMUST00000131965.1
mitochondrial tumor suppressor 1
chr1_-_139377041 0.06 ENSMUST00000059825.5
crumbs homolog 1 (Drosophila)
chr7_-_29906524 0.06 ENSMUST00000159920.1
ENSMUST00000162592.1
zinc finger protein 27
chr9_-_39604124 0.06 ENSMUST00000042485.4
ENSMUST00000141370.1
expressed sequence AW551984
chr5_-_113310697 0.06 ENSMUST00000154248.1
small G protein signaling modulator 1
chr18_+_80046854 0.06 ENSMUST00000070219.7
par-6 partitioning defective 6 homolog gamma (C. elegans)
chr3_-_144819494 0.06 ENSMUST00000029929.7
chloride channel calcium activated 2
chrX_-_134111852 0.06 ENSMUST00000033610.6
NADPH oxidase 1
chr19_-_57197435 0.06 ENSMUST00000111550.1
actin-binding LIM protein 1
chr19_-_56548122 0.06 ENSMUST00000026063.5
ENSMUST00000182276.1
DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
chr14_-_100149764 0.05 ENSMUST00000097079.4
Kruppel-like factor 12
chr4_-_94650092 0.05 ENSMUST00000107101.1
leucine rich repeat containing 19
chr18_+_32067729 0.05 ENSMUST00000025243.3
IWS1 homolog (S. cerevisiae)
chr19_-_29753600 0.05 ENSMUST00000175764.1
RIKEN cDNA 9930021J03 gene
chr19_+_39113898 0.05 ENSMUST00000087234.2
cytochrome P450, family 2, subfamily c, polypeptide 66
chr1_+_88200601 0.05 ENSMUST00000049289.8
UDP glucuronosyltransferase 1 family, polypeptide A2
chr19_-_57197496 0.05 ENSMUST00000111544.1
actin-binding LIM protein 1
chr14_+_26894557 0.05 ENSMUST00000090337.4
ENSMUST00000165929.2
ankyrin repeat and SOCS box-containing 14
chr16_-_23029062 0.05 ENSMUST00000115349.2
kininogen 2
chr19_+_56548254 0.05 ENSMUST00000071423.5
NHL repeat containing 2
chr2_-_63184253 0.05 ENSMUST00000075052.3
ENSMUST00000112454.1
potassium voltage-gated channel, subfamily H (eag-related), member 7
chr19_-_57197377 0.05 ENSMUST00000111546.1
actin-binding LIM protein 1
chr1_-_37536232 0.05 ENSMUST00000042161.8
mannoside acetylglucosaminyltransferase 4, isoenzyme A
chr8_+_66386292 0.04 ENSMUST00000039540.5
ENSMUST00000110253.2
membrane-associated ring finger (C3HC4) 1
chr14_-_75754475 0.04 ENSMUST00000049168.7
component of oligomeric golgi complex 3
chr18_+_37355271 0.04 ENSMUST00000051163.1
protocadherin beta 8
chr13_-_12520377 0.04 ENSMUST00000179308.1
EDAR (ectodysplasin-A receptor)-associated death domain
chrX_-_49797700 0.04 ENSMUST00000033442.7
ENSMUST00000114891.1
immunoglobulin superfamily, member 1
chr1_-_128102412 0.04 ENSMUST00000112538.1
ENSMUST00000086614.5
zinc finger, RAN-binding domain containing 3
chr15_-_37459327 0.04 ENSMUST00000119730.1
ENSMUST00000120746.1
neurocalcin delta
chrX_-_134751331 0.04 ENSMUST00000113194.1
ENSMUST00000052431.5
armadillo repeat containing, X-linked 6
chr17_-_45474839 0.04 ENSMUST00000024731.8
spermatogenesis associated, serine-rich 1
chr17_-_78684262 0.04 ENSMUST00000145480.1
striatin, calmodulin binding protein
chr3_-_104777483 0.04 ENSMUST00000139783.1
family with sequence similarity 19, member A3
chr10_-_127030789 0.04 ENSMUST00000120547.1
ENSMUST00000152054.1
Ts translation elongation factor, mitochondrial
chrX_-_111697069 0.03 ENSMUST00000113422.2
ENSMUST00000038472.5
highly divergent homeobox
chr5_-_66514815 0.03 ENSMUST00000161879.1
ENSMUST00000159357.1
amyloid beta (A4) precursor protein-binding, family B, member 2
chr2_+_91526756 0.03 ENSMUST00000111338.3
cytoskeleton associated protein 5
chrX_+_85048309 0.03 ENSMUST00000113991.1
ENSMUST00000113992.2
dystrophin, muscular dystrophy
chr12_+_59129757 0.03 ENSMUST00000069430.8
ENSMUST00000177370.1
CTAGE family, member 5
chr11_-_61720795 0.03 ENSMUST00000051552.4
solute carrier family 5 (sodium/glucose cotransporter), member 10
chr13_-_100246323 0.03 ENSMUST00000049789.2
NLR family, apoptosis inhibitory protein 5
chr5_+_87925579 0.03 ENSMUST00000001667.6
ENSMUST00000113267.1
casein kappa
chr13_-_3945349 0.03 ENSMUST00000058610.7
urocortin 3
chr1_-_24612700 0.02 ENSMUST00000088336.1
predicted gene 10222
chr2_+_125136692 0.02 ENSMUST00000099452.2
cortexin 2
chr7_-_34313531 0.02 ENSMUST00000108074.1
RIKEN cDNA 4931406P16 gene
chr13_-_96435952 0.02 ENSMUST00000181761.1
ankyrin repeat and death domain containing 1B
chr17_-_32166879 0.02 ENSMUST00000087723.3
notch 3
chr9_-_21989427 0.02 ENSMUST00000045726.6
ral guanine nucleotide dissociation stimulator-like 3
chr17_+_75435886 0.02 ENSMUST00000164192.1
RAS, guanyl releasing protein 3
chr1_+_194619815 0.02 ENSMUST00000027952.5
plexin A2
chr3_+_32436376 0.02 ENSMUST00000108242.1
phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
chrX_-_10216918 0.02 ENSMUST00000072393.2
ENSMUST00000044598.6
ENSMUST00000073392.4
ENSMUST00000115533.1
ENSMUST00000115532.1
retinitis pigmentosa GTPase regulator
chr14_-_36919314 0.02 ENSMUST00000182797.1
coiled-coil serine rich 2
chr1_-_140183404 0.02 ENSMUST00000066859.6
ENSMUST00000111976.2
complement component factor h
chr7_+_120851183 0.02 ENSMUST00000106487.1
ENSMUST00000143322.1
ENSMUST00000106488.1
eukaryotic elongation factor-2 kinase
chr3_+_114030532 0.02 ENSMUST00000123619.1
ENSMUST00000092155.5
collagen, type XI, alpha 1
chr3_-_65958236 0.02 ENSMUST00000029416.7
cyclin L1
chr7_+_30565410 0.02 ENSMUST00000043850.7
IGF-like family receptor 1
chr5_-_103977326 0.02 ENSMUST00000120320.1
hydroxysteroid (17-beta) dehydrogenase 13
chr6_+_84008540 0.02 ENSMUST00000113821.1
ENSMUST00000113823.1
dysferlin
chr2_-_37647199 0.01 ENSMUST00000028279.3
spermatid perinuclear RNA binding protein
chr6_-_142473075 0.01 ENSMUST00000032371.7
glycogen synthase 2
chr8_+_71887264 0.01 ENSMUST00000034259.7
zinc finger protein 709
chr15_+_81744848 0.01 ENSMUST00000109554.1
zinc finger CCCH type containing 7B
chr12_+_59129720 0.01 ENSMUST00000175912.1
ENSMUST00000176892.1
CTAGE family, member 5
chr5_-_113310729 0.01 ENSMUST00000112325.1
ENSMUST00000048112.6
small G protein signaling modulator 1
chr10_+_23920356 0.01 ENSMUST00000051532.4
trace amine-associated receptor 1
chr9_-_96437434 0.01 ENSMUST00000070500.2
cDNA sequence BC043934
chr9_+_78051938 0.01 ENSMUST00000024104.7
glial cells missing homolog 1 (Drosophila)
chr11_+_110968016 0.01 ENSMUST00000106636.1
ENSMUST00000180023.1
potassium inwardly-rectifying channel, subfamily J, member 16
chr2_-_116064721 0.01 ENSMUST00000110906.2
Meis homeobox 2
chr4_+_136143497 0.01 ENSMUST00000008016.2
inhibitor of DNA binding 3
chr12_+_36314160 0.01 ENSMUST00000041407.5
sclerostin domain containing 1
chr16_-_65562686 0.00 ENSMUST00000004965.6
charged multivesicular body protein 2B
chr2_-_140671462 0.00 ENSMUST00000110057.2
fibronectin leucine rich transmembrane protein 3
chr16_+_20696175 0.00 ENSMUST00000128273.1
family with sequence similarity 131, member A
chr10_+_127420867 0.00 ENSMUST00000064793.6
R3H domain containing 2
chr1_-_139781236 0.00 ENSMUST00000027612.8
ENSMUST00000111989.2
ENSMUST00000111986.2
predicted gene 4788
chr11_-_55607733 0.00 ENSMUST00000108853.1
ENSMUST00000075603.4
glycine receptor, alpha 1 subunit
chr1_+_183388981 0.00 ENSMUST00000097043.5
TATA box binding protein (Tbp)-associated factor, RNA polymerase I, A
chr8_-_84249701 0.00 ENSMUST00000019506.7
DNA segment, Chr 8, ERATO Doi 738, expressed
chr8_+_107031218 0.00 ENSMUST00000034388.9
vacuolar protein sorting 4a (yeast)
chr1_-_175491130 0.00 ENSMUST00000027812.5
regulator of G protein signaling 7
chr2_+_69790968 0.00 ENSMUST00000180290.1
phosphatase, orphan 2
chr7_+_45621805 0.00 ENSMUST00000033100.4
izumo sperm-egg fusion 1
chr6_+_11925869 0.00 ENSMUST00000115510.1
ENSMUST00000115511.2
ENSMUST00000090632.4
PHD finger protein 14
chr15_+_39006272 0.00 ENSMUST00000179165.1
ENSMUST00000022906.7
frizzled homolog 6 (Drosophila)
chr6_+_48537560 0.00 ENSMUST00000040361.5
ATPase, H+ transporting, lysosomal V0 subunit E2

Network of associatons between targets according to the STRING database.

First level regulatory network of Hoxd9

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.


View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0010040 response to iron(II) ion(GO:0010040)
0.0 0.1 GO:0010513 phospholipase C-activating serotonin receptor signaling pathway(GO:0007208) positive regulation of phosphatidylinositol biosynthetic process(GO:0010513)
0.0 0.1 GO:0030450 regulation of complement activation, classical pathway(GO:0030450)
0.0 0.1 GO:0009972 cytidine catabolic process(GO:0006216) cytidine deamination(GO:0009972) cytidine metabolic process(GO:0046087)
0.0 0.1 GO:0071929 alpha-tubulin acetylation(GO:0071929)
0.0 0.1 GO:0034147 regulation of granuloma formation(GO:0002631) negative regulation of granuloma formation(GO:0002632) regulation of toll-like receptor 5 signaling pathway(GO:0034147) negative regulation of toll-like receptor 5 signaling pathway(GO:0034148) negative regulation of nucleotide-binding oligomerization domain containing 1 signaling pathway(GO:0070429) tolerance induction to lipopolysaccharide(GO:0072573)
0.0 0.1 GO:0060054 positive regulation of epithelial cell proliferation involved in wound healing(GO:0060054)
0.0 0.2 GO:0031848 protection from non-homologous end joining at telomere(GO:0031848)
0.0 0.1 GO:0006069 ethanol oxidation(GO:0006069)
0.0 0.1 GO:0045726 positive regulation of integrin biosynthetic process(GO:0045726)
0.0 0.2 GO:0052697 flavonoid glucuronidation(GO:0052696) xenobiotic glucuronidation(GO:0052697)
0.0 0.1 GO:0035616 histone H2B conserved C-terminal lysine deubiquitination(GO:0035616)
0.0 0.2 GO:0006642 triglyceride mobilization(GO:0006642)
0.0 0.1 GO:1903566 positive regulation of protein localization to cilium(GO:1903566)
0.0 0.1 GO:0048664 neuron fate determination(GO:0048664)
0.0 0.0 GO:0036292 DNA rewinding(GO:0036292)
0.0 0.3 GO:0040023 nuclear migration(GO:0007097) establishment of nucleus localization(GO:0040023)
0.0 0.1 GO:0044789 modulation by host of viral release from host cell(GO:0044789) positive regulation by host of viral release from host cell(GO:0044791)
0.0 0.0 GO:0061152 trachea submucosa development(GO:0061152) trachea gland development(GO:0061153)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:0031983 vesicle lumen(GO:0031983)
0.0 0.2 GO:0034663 endoplasmic reticulum chaperone complex(GO:0034663)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0008422 beta-glucosidase activity(GO:0008422)
0.0 0.1 GO:0003960 NADPH:quinone reductase activity(GO:0003960) alcohol dehydrogenase activity, zinc-dependent(GO:0004024)
0.0 0.2 GO:1901611 phosphatidylglycerol binding(GO:1901611)
0.0 0.2 GO:0035312 5'-3' exodeoxyribonuclease activity(GO:0035312)
0.0 0.2 GO:0035473 lipase binding(GO:0035473)
0.0 0.1 GO:0004126 cytidine deaminase activity(GO:0004126)
0.0 0.1 GO:0052724 inositol hexakisphosphate kinase activity(GO:0000828) inositol hexakisphosphate 5-kinase activity(GO:0000832) inositol hexakisphosphate 1-kinase activity(GO:0052723) inositol hexakisphosphate 3-kinase activity(GO:0052724)
0.0 0.1 GO:0008390 testosterone 16-alpha-hydroxylase activity(GO:0008390) oxidoreductase activity, acting on CH or CH2 groups, quinone or similar compound as acceptor(GO:0033695) caffeine oxidase activity(GO:0034875)
0.0 0.1 GO:0030171 voltage-gated proton channel activity(GO:0030171)
0.0 0.2 GO:0001972 retinoic acid binding(GO:0001972)
0.0 0.1 GO:0004468 lysine N-acetyltransferase activity, acting on acetyl phosphate as donor(GO:0004468)
0.0 0.1 GO:0004993 G-protein coupled serotonin receptor activity(GO:0004993) serotonin binding(GO:0051378)
0.0 0.1 GO:0061578 Lys63-specific deubiquitinase activity(GO:0061578)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 REACTOME DIGESTION OF DIETARY CARBOHYDRATE Genes involved in Digestion of dietary carbohydrate
0.0 0.2 REACTOME GLUCURONIDATION Genes involved in Glucuronidation
0.0 0.1 REACTOME ETHANOL OXIDATION Genes involved in Ethanol oxidation
0.0 0.1 REACTOME SEROTONIN RECEPTORS Genes involved in Serotonin receptors