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2D miR_HR1_12

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Results for Hoxc13_Hoxd13

Z-value: 0.35

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Transcription factors associated with Hoxc13_Hoxd13

Gene Symbol Gene ID Gene Info
ENSMUSG00000001655.6 homeobox C13
ENSMUSG00000001819.4 homeobox D13

Activity profile of Hoxc13_Hoxd13 motif

Sorted Z-values of Hoxc13_Hoxd13 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr6_+_78370877 0.51 ENSMUST00000096904.3
regenerating islet-derived 3 beta
chr11_+_96286623 0.40 ENSMUST00000049352.7
homeobox B7
chr17_-_31144271 0.35 ENSMUST00000024826.7
trefoil factor 2 (spasmolytic protein 1)
chr4_-_141825997 0.34 ENSMUST00000102481.3
chymotrypsin-like elastase family, member 2A
chr4_+_54945038 0.31 ENSMUST00000133895.1
zinc finger protein 462
chr7_-_73537621 0.31 ENSMUST00000172704.1
chromodomain helicase DNA binding protein 2
chr7_+_28540863 0.29 ENSMUST00000119180.2
syncollin
chr17_+_43568641 0.23 ENSMUST00000169694.1
phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
chr17_+_43568269 0.20 ENSMUST00000024706.5
phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
chr11_-_99986593 0.19 ENSMUST00000105050.2
keratin associated protein 16-1
chr17_-_57000018 0.19 ENSMUST00000002740.2
persephin
chr7_-_30612731 0.18 ENSMUST00000006476.4
uroplakin 1A
chr10_+_87859481 0.17 ENSMUST00000121952.1
insulin-like growth factor 1
chr14_+_65666394 0.15 ENSMUST00000022610.8
scavenger receptor class A, member 5 (putative)
chr6_-_52217505 0.15 ENSMUST00000048715.6
homeobox A7
chr10_+_87859593 0.15 ENSMUST00000126490.1
insulin-like growth factor 1
chr1_+_60908993 0.14 ENSMUST00000027164.2
cytotoxic T-lymphocyte-associated protein 4
chr3_+_126597415 0.13 ENSMUST00000066452.7
ENSMUST00000171289.1
ENSMUST00000106399.1
calcium/calmodulin-dependent protein kinase II, delta
chr3_+_126597299 0.13 ENSMUST00000106400.2
ENSMUST00000106401.1
calcium/calmodulin-dependent protein kinase II, delta
chr17_-_13761441 0.13 ENSMUST00000127032.1
t-complex-associated testis expressed 2
chr1_-_45503282 0.12 ENSMUST00000086430.4
collagen, type V, alpha 2
chr6_-_52218686 0.12 ENSMUST00000134367.2
homeobox A7
chrX_+_107816477 0.12 ENSMUST00000143975.1
ENSMUST00000144695.1
ENSMUST00000167154.1
family with sequence similarity 46, member D
chr15_-_101850778 0.12 ENSMUST00000023790.3
keratin 1
chr7_+_35119285 0.12 ENSMUST00000042985.9
CCAAT/enhancer binding protein (C/EBP), alpha
chr4_-_148500449 0.11 ENSMUST00000030840.3
angiopoietin-like 7
chr5_+_114146525 0.11 ENSMUST00000102582.1
acetyl-Coenzyme A carboxylase beta
chr10_-_28986280 0.11 ENSMUST00000152363.1
ENSMUST00000015663.6
RIKEN cDNA 2310057J18 gene
chr9_+_5308828 0.10 ENSMUST00000162846.1
ENSMUST00000027012.7
caspase 4, apoptosis-related cysteine peptidase
chr9_-_64022027 0.10 ENSMUST00000179458.1
SMAD family member 6
chr17_+_75178911 0.09 ENSMUST00000112514.1
latent transforming growth factor beta binding protein 1
chr1_+_85100164 0.09 ENSMUST00000097669.1
predicted gene 10553
chr18_-_38209762 0.09 ENSMUST00000057185.6
protocadherin 1
chr3_+_95658771 0.09 ENSMUST00000178686.1
myeloid cell leukemia sequence 1
chr19_-_7341848 0.09 ENSMUST00000171393.1
MAP/microtubule affinity-regulating kinase 2
chr8_+_104961713 0.09 ENSMUST00000043183.7
carboxylesterase 2G
chr1_+_182124737 0.09 ENSMUST00000111018.1
ENSMUST00000027792.5
signal recognition particle 9
chr9_-_51328898 0.08 ENSMUST00000039959.4
RIKEN cDNA 1810046K07 gene
chr9_-_64022043 0.08 ENSMUST00000041029.5
SMAD family member 6
chr5_-_62765618 0.08 ENSMUST00000159470.1
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
chr19_-_7341792 0.08 ENSMUST00000164205.1
ENSMUST00000165286.1
ENSMUST00000168324.1
ENSMUST00000032557.8
MAP/microtubule affinity-regulating kinase 2
chr3_-_142169196 0.08 ENSMUST00000098568.1
bone morphogenetic protein receptor, type 1B
chr7_-_133680061 0.08 ENSMUST00000033278.1
ENSMUST00000122136.1
matrix metallopeptidase 21
chr11_+_75732869 0.08 ENSMUST00000067664.3
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
chr2_+_74697663 0.08 ENSMUST00000059272.8
homeobox D9
chr5_+_17574268 0.08 ENSMUST00000030568.7
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C
chr10_+_87860030 0.07 ENSMUST00000062862.6
insulin-like growth factor 1
chr15_+_23036449 0.07 ENSMUST00000164787.1
cadherin 18
chr3_-_142169311 0.07 ENSMUST00000106230.1
bone morphogenetic protein receptor, type 1B
chr6_+_124304646 0.07 ENSMUST00000112541.2
ENSMUST00000032234.2
CD163 antigen
chr3_+_79885930 0.07 ENSMUST00000029567.8
family with sequence similarity 198, member B
chr3_+_95658714 0.06 ENSMUST00000037947.8
myeloid cell leukemia sequence 1
chr4_-_110290884 0.06 ENSMUST00000142722.1
ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
chr7_-_31051431 0.06 ENSMUST00000073892.4
FXYD domain-containing ion transport regulator 7
chr1_+_60909148 0.06 ENSMUST00000097720.3
cytotoxic T-lymphocyte-associated protein 4
chr2_-_170427828 0.06 ENSMUST00000013667.2
ENSMUST00000109152.2
ENSMUST00000068137.4
breast carcinoma amplified sequence 1
chr1_-_74124420 0.05 ENSMUST00000169786.1
tensin 1
chr8_+_105264648 0.05 ENSMUST00000036221.5
F-box and leucine-rich repeat protein 8
chr9_-_123978297 0.05 ENSMUST00000071404.3
chemokine (C-C motif) receptor 1-like 1
chr1_+_194976342 0.05 ENSMUST00000181226.1
ENSMUST00000181947.1
RIKEN cDNA A330023F24 gene
chr14_+_65666430 0.05 ENSMUST00000069226.6
scavenger receptor class A, member 5 (putative)
chr17_+_43568475 0.05 ENSMUST00000167418.1
phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
chr1_+_59256906 0.04 ENSMUST00000160662.1
ENSMUST00000114248.2
cyclin-dependent kinase 15
chr8_-_70139197 0.04 ENSMUST00000075724.7
regulatory factor X-associated ankyrin-containing protein
chr4_-_133602168 0.04 ENSMUST00000057311.3
stratifin
chr17_+_75178797 0.04 ENSMUST00000112516.1
ENSMUST00000135447.1
latent transforming growth factor beta binding protein 1
chr3_+_59006978 0.04 ENSMUST00000040325.7
ENSMUST00000164225.1
ENSMUST00000040846.8
ENSMUST00000029393.8
mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like
chr9_-_110946158 0.04 ENSMUST00000035075.8
teratocarcinoma-derived growth factor 1
chr13_+_111867931 0.04 ENSMUST00000128198.1
predicted gene 15326
chr5_-_114858682 0.04 ENSMUST00000066959.4
predicted gene 9936
chr15_-_79062866 0.04 ENSMUST00000151889.1
ENSMUST00000040676.4
ankyrin repeat domain 54
chr11_+_119022962 0.04 ENSMUST00000026662.7
chromobox 2
chr5_+_90561102 0.03 ENSMUST00000094615.4
RIKEN cDNA 5830473C10 gene
chr1_-_36273425 0.03 ENSMUST00000056946.6
neuralized homolog 3 homolog (Drosophila)
chr11_-_5542177 0.03 ENSMUST00000020776.4
coiled-coil domain containing 117
chr6_+_24528144 0.03 ENSMUST00000031696.3
ankyrin repeat and SOCS box-containing 15
chr5_+_135064206 0.03 ENSMUST00000071263.5
DnaJ (Hsp40) homolog, subfamily C, member 30
chr10_+_96616998 0.03 ENSMUST00000038377.7
B cell translocation gene 1, anti-proliferative
chr18_-_46280820 0.03 ENSMUST00000025354.3
protein geranylgeranyltransferase type I, beta subunit
chr10_-_53647080 0.03 ENSMUST00000169866.1
family with sequence similarity 184, member A
chr4_+_109235262 0.03 ENSMUST00000106631.2
calreticulin 4
chr8_+_112570043 0.03 ENSMUST00000034225.6
ENSMUST00000118171.1
contactin associated protein-like 4
chr17_-_90088343 0.03 ENSMUST00000173917.1
neurexin I
chr13_-_19732929 0.03 ENSMUST00000151029.1
RIKEN cDNA A530099J19 gene
chrX_+_164140447 0.02 ENSMUST00000073973.4
angiotensin I converting enzyme (peptidyl-dipeptidase A) 2
chr4_-_82850721 0.02 ENSMUST00000139401.1
zinc finger, DHHC domain containing 21
chr6_-_112947246 0.02 ENSMUST00000088373.4
SLIT-ROBO Rho GTPase activating protein 3
chr6_+_96115249 0.02 ENSMUST00000075080.5
family with sequence similarity 19, member A1
chr2_-_66440753 0.02 ENSMUST00000112371.2
ENSMUST00000138910.1
sodium channel, voltage-gated, type I, alpha
chr4_+_21879662 0.02 ENSMUST00000029909.2
coenzyme Q3 homolog, methyltransferase (yeast)
chr4_-_44710408 0.02 ENSMUST00000134968.2
ENSMUST00000173821.1
ENSMUST00000174319.1
ENSMUST00000173733.1
ENSMUST00000172866.1
ENSMUST00000165417.2
ENSMUST00000107825.2
ENSMUST00000102932.3
ENSMUST00000107827.2
ENSMUST00000107826.2
paired box gene 5
chr6_+_48448100 0.02 ENSMUST00000169350.2
ENSMUST00000043676.5
SCO-spondin
chr11_+_105994635 0.01 ENSMUST00000183675.1
ENSMUST00000184871.1
angiotensin I converting enzyme 3 precursor
angiotensin I converting enzyme (peptidyl-dipeptidase A) 3
chr3_-_75451818 0.01 ENSMUST00000178270.1
WD repeat domain 49
chr9_-_77347816 0.01 ENSMUST00000184138.1
ENSMUST00000184006.1
ENSMUST00000185144.1
ENSMUST00000034910.9
muscular LMNA-interacting protein
chr7_-_102759465 0.01 ENSMUST00000168007.1
ENSMUST00000060187.7
olfactory receptor 78
chr1_-_128328311 0.01 ENSMUST00000073490.6
lactase
chr9_+_32696005 0.01 ENSMUST00000034534.6
ENSMUST00000050797.7
ENSMUST00000184887.1
E26 avian leukemia oncogene 1, 5' domain
chr11_+_96282529 0.01 ENSMUST00000125410.1
homeobox B8
chrX_+_96455359 0.01 ENSMUST00000033553.7
hephaestin
chr5_-_135064063 0.01 ENSMUST00000111205.1
ENSMUST00000141309.1
Williams Beuren syndrome chromosome region 22
chr14_-_76110760 0.01 ENSMUST00000022585.3
GPALPP motifs containing 1
chr3_-_104366613 0.00 ENSMUST00000056145.2
predicted gene 5546
chr12_+_11456052 0.00 ENSMUST00000124065.1
RAD51 associated protein 2
chr18_+_36744656 0.00 ENSMUST00000007042.5
IK cytokine
chr10_+_70204675 0.00 ENSMUST00000020090.1
RIKEN cDNA 2310015B20 gene
chr5_-_62766153 0.00 ENSMUST00000076623.4
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
chrX_-_7319186 0.00 ENSMUST00000115746.1
chloride channel 5
chr18_+_37484955 0.00 ENSMUST00000053856.4
protocadherin beta 17
chr17_+_6270475 0.00 ENSMUST00000088940.4
transmembrane protein 181A
chr18_-_15063560 0.00 ENSMUST00000168989.1
potassium channel tetramerisation domain containing 1

Network of associatons between targets according to the STRING database.

First level regulatory network of Hoxc13_Hoxd13

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0034441 plasma lipoprotein particle oxidation(GO:0034441)
0.1 0.4 GO:1904075 regulation of trophectodermal cell proliferation(GO:1904073) positive regulation of trophectodermal cell proliferation(GO:1904075)
0.1 0.3 GO:0060455 negative regulation of gastric acid secretion(GO:0060455)
0.1 0.5 GO:1903208 neuron death in response to hydrogen peroxide(GO:0036476) regulation of hydrogen peroxide-induced neuron death(GO:1903207) negative regulation of hydrogen peroxide-induced neuron death(GO:1903208)
0.0 0.3 GO:0035022 positive regulation of Rac protein signal transduction(GO:0035022)
0.0 0.2 GO:0045590 negative regulation of regulatory T cell differentiation(GO:0045590)
0.0 0.1 GO:0046949 fatty-acyl-CoA biosynthetic process(GO:0046949) malonyl-CoA metabolic process(GO:2001293)
0.0 0.2 GO:0007352 zygotic specification of dorsal/ventral axis(GO:0007352)
0.0 0.2 GO:1903378 positive regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway(GO:1903378)
0.0 0.1 GO:1903225 negative regulation of endodermal cell differentiation(GO:1903225)
0.0 0.1 GO:0048165 ovarian cumulus expansion(GO:0001550) fused antrum stage(GO:0048165)
0.0 0.3 GO:0045617 negative regulation of keratinocyte differentiation(GO:0045617)
0.0 0.5 GO:0061436 establishment of skin barrier(GO:0061436)
0.0 0.1 GO:1903265 positive regulation of tumor necrosis factor-mediated signaling pathway(GO:1903265)
0.0 0.4 GO:0090190 positive regulation of branching involved in ureteric bud morphogenesis(GO:0090190)
0.0 0.1 GO:0006616 SRP-dependent cotranslational protein targeting to membrane, translocation(GO:0006616)
0.0 0.1 GO:1902309 negative regulation of peptidyl-serine dephosphorylation(GO:1902309)
0.0 0.1 GO:0003350 pulmonary myocardium development(GO:0003350)
0.0 0.2 GO:0060218 hematopoietic stem cell differentiation(GO:0060218)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0038045 large latent transforming growth factor-beta complex(GO:0038045)
0.0 0.4 GO:0042567 alphav-beta3 integrin-IGF-1-IGF1R complex(GO:0035867) insulin-like growth factor ternary complex(GO:0042567)
0.0 0.1 GO:0005588 collagen type V trimer(GO:0005588)
0.0 0.1 GO:0036488 CHOP-C/EBP complex(GO:0036488)
0.0 0.1 GO:0097169 AIM2 inflammasome complex(GO:0097169)
0.0 0.5 GO:0034362 low-density lipoprotein particle(GO:0034362)
0.0 0.2 GO:0097427 microtubule bundle(GO:0097427)
0.0 0.5 GO:0042588 zymogen granule(GO:0042588)
0.0 0.2 GO:0097136 Bcl-2 family protein complex(GO:0097136)
0.0 0.3 GO:0045095 keratin filament(GO:0045095)
0.0 0.1 GO:0005785 signal recognition particle receptor complex(GO:0005785) signal recognition particle, endoplasmic reticulum targeting(GO:0005786)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0030617 transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity(GO:0030617)
0.0 0.5 GO:0003847 1-alkyl-2-acetylglycerophosphocholine esterase activity(GO:0003847) calcium-independent phospholipase A2 activity(GO:0047499)
0.0 0.1 GO:0030280 structural constituent of epidermis(GO:0030280)
0.0 0.2 GO:0070287 ferritin receptor activity(GO:0070287)
0.0 0.1 GO:0050436 microfibril binding(GO:0050436)
0.0 0.3 GO:0045236 CXCR chemokine receptor binding(GO:0045236)
0.0 0.3 GO:0019871 sodium channel inhibitor activity(GO:0019871)
0.0 0.1 GO:0003989 acetyl-CoA carboxylase activity(GO:0003989)
0.0 0.0 GO:0070698 type I activin receptor binding(GO:0070698)
0.0 0.2 GO:0051434 BH3 domain binding(GO:0051434)
0.0 0.1 GO:0005025 transforming growth factor beta receptor activity, type I(GO:0005025)
0.0 0.1 GO:0005047 signal recognition particle binding(GO:0005047) 7S RNA binding(GO:0008312)
0.0 0.4 GO:0043539 protein serine/threonine kinase activator activity(GO:0043539)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.6 PID LIS1 PATHWAY Lissencephaly gene (LIS1) in neuronal migration and development

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.5 REACTOME SYNTHESIS SECRETION AND DEACYLATION OF GHRELIN Genes involved in Synthesis, Secretion, and Deacylation of Ghrelin
0.0 0.3 REACTOME CREB PHOSPHORYLATION THROUGH THE ACTIVATION OF CAMKII Genes involved in CREB phosphorylation through the activation of CaMKII
0.0 0.3 REACTOME SIGNALING BY BMP Genes involved in Signaling by BMP