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2D miR_HR1_12

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Results for Rara

Z-value: 0.24

Motif logo

Transcription factors associated with Rara

Gene Symbol Gene ID Gene Info
ENSMUSG00000037992.10 retinoic acid receptor, alpha

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Raramm10_v2_chr11_+_98927785_989278180.431.6e-01Click!

Activity profile of Rara motif

Sorted Z-values of Rara motif

Promoter Log-likelihood Transcript Gene Gene Info
chr15_-_102366314 0.19 ENSMUST00000078508.5
Sp7 transcription factor 7
chr7_-_141429351 0.12 ENSMUST00000164387.1
ENSMUST00000137488.1
ENSMUST00000084436.3
cell cycle exit and neuronal differentiation 1
chr14_+_55618023 0.12 ENSMUST00000002395.7
REC8 homolog (yeast)
chrX_-_59567348 0.12 ENSMUST00000124402.1
fibroblast growth factor 13
chr7_-_141429433 0.09 ENSMUST00000124444.1
cell cycle exit and neuronal differentiation 1
chr11_+_98960412 0.09 ENSMUST00000107473.2
retinoic acid receptor, alpha
chr10_+_4611971 0.08 ENSMUST00000105590.1
ENSMUST00000067086.7
estrogen receptor 1 (alpha)
chr1_+_157458554 0.08 ENSMUST00000046743.4
ENSMUST00000119891.1
cDNA sequence BC026585
chr10_+_70868633 0.07 ENSMUST00000058942.5
RIKEN cDNA 4930533K18 gene
chr7_-_44670820 0.06 ENSMUST00000048102.7
myosin, heavy polypeptide 14
chr5_+_135806859 0.06 ENSMUST00000126232.1
serine/arginine repetitive matrix 3
chr10_+_19951055 0.05 ENSMUST00000152533.1
mitogen-activated protein kinase kinase kinase 5
chr3_-_54915867 0.05 ENSMUST00000070342.3
serine rich and transmembrane domain containing 1
chr5_-_137625069 0.05 ENSMUST00000031732.7
F-box protein 24
chr4_-_46991842 0.04 ENSMUST00000107749.2
gamma-aminobutyric acid (GABA) B receptor, 2
chr11_-_5261558 0.04 ENSMUST00000020662.8
kringle containing transmembrane protein 1
chr15_+_82256023 0.04 ENSMUST00000143238.1
RIKEN cDNA 1500009C09 gene
chr11_+_4986824 0.04 ENSMUST00000009234.9
ENSMUST00000109897.1
adaptor protein complex AP-1, beta 1 subunit
chr12_+_87026564 0.04 ENSMUST00000110187.1
ENSMUST00000156162.1
transmembrane protein 63c
chr14_+_64588112 0.04 ENSMUST00000181808.1
RIKEN cDNA A930011O12 gene
chr2_-_25617672 0.04 ENSMUST00000028309.3
RIKEN cDNA 4921530D09 gene
chr11_+_3488275 0.04 ENSMUST00000064265.6
phospholipase A2, group III
chr1_-_175692624 0.04 ENSMUST00000027809.7
opsin 3
chr6_+_91157373 0.03 ENSMUST00000155007.1
histone deacetylase 11
chr17_+_34593388 0.03 ENSMUST00000174532.1
pre B cell leukemia homeobox 2
chr8_-_119778380 0.03 ENSMUST00000049156.5
TBC/LysM associated domain containing 1
chr4_+_141444654 0.03 ENSMUST00000006377.6
zinc finger and BTB domain containing 17
chr11_-_5915124 0.03 ENSMUST00000109823.2
ENSMUST00000109822.1
glucokinase
chr4_-_128609981 0.03 ENSMUST00000141040.1
ENSMUST00000147876.1
ENSMUST00000097877.2
zinc finger and SCAN domains 20
chr8_-_72212837 0.03 ENSMUST00000098630.3
calcium and integrin binding family member 3
chr8_+_106150359 0.03 ENSMUST00000034377.6
phospholipase A2, group XV
chr10_+_79910856 0.03 ENSMUST00000181321.1
predicted gene, 26602
chr2_-_91070283 0.03 ENSMUST00000111436.2
ENSMUST00000073575.5
solute carrier family 39 (metal ion transporter), member 13
chr3_+_79884931 0.03 ENSMUST00000135021.1
family with sequence similarity 198, member B
chr2_+_169633517 0.03 ENSMUST00000109157.1
teashirt zinc finger family member 2
chr9_-_83146601 0.03 ENSMUST00000162246.2
ENSMUST00000161796.2
high mobility group nucleosomal binding domain 3
chr2_-_91070180 0.03 ENSMUST00000153367.1
ENSMUST00000079976.3
solute carrier family 39 (metal ion transporter), member 13
chr7_+_45873127 0.03 ENSMUST00000107718.1
KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1
chr19_-_8405060 0.02 ENSMUST00000064507.5
ENSMUST00000120540.1
ENSMUST00000096269.4
solute carrier family 22, member 30
chr14_-_30353468 0.02 ENSMUST00000112249.1
calcium channel, voltage-dependent, L type, alpha 1D subunit
chr3_+_79884496 0.02 ENSMUST00000118853.1
family with sequence similarity 198, member B
chr14_+_58070547 0.02 ENSMUST00000165526.1
fibroblast growth factor 9
chr14_-_74947865 0.02 ENSMUST00000088970.5
leucine-rich repeats and calponin homology (CH) domain containing 1
chr2_+_26319741 0.02 ENSMUST00000066889.6
G-protein signalling modulator 1 (AGS3-like, C. elegans)
chr14_+_76488436 0.02 ENSMUST00000101618.2
TSC22 domain family, member 1
chr7_+_45872772 0.02 ENSMUST00000002855.5
ENSMUST00000107719.1
KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1
chr6_-_54972603 0.02 ENSMUST00000060655.8
nucleotide-binding oligomerization domain containing 1
chr4_+_150853919 0.02 ENSMUST00000073600.2
ERBB receptor feedback inhibitor 1
chr3_+_96104498 0.02 ENSMUST00000132980.1
ENSMUST00000138206.1
ENSMUST00000090785.2
ENSMUST00000035519.5
OTU domain containing 7B
chrX_+_74254782 0.02 ENSMUST00000119197.1
ENSMUST00000088313.4
emerin
chr8_-_94876269 0.02 ENSMUST00000046461.7
docking protein 4
chr5_+_53267103 0.01 ENSMUST00000121042.1
small integral membrane protein 20
chr15_-_101786458 0.01 ENSMUST00000071104.4
keratin 72
chr5_-_105239533 0.01 ENSMUST00000065588.6
guanylate-binding protein 10
chr2_-_34754364 0.01 ENSMUST00000142436.1
ENSMUST00000113099.3
ENSMUST00000028224.8
GTPase activating protein and VPS9 domains 1
chr17_+_24038144 0.01 ENSMUST00000059482.5
protease, serine, 27
chr2_-_181365306 0.01 ENSMUST00000108808.1
ENSMUST00000170190.1
ENSMUST00000127988.1
ADP-ribosylation factor related protein 1
chr1_-_163403627 0.01 ENSMUST00000045138.4
golgin, RAB6-interacting
chr3_-_36475688 0.01 ENSMUST00000029266.8
annexin A5
chr4_+_41348996 0.01 ENSMUST00000072866.5
ENSMUST00000108060.3
ubiquitin-associated protein 1
chr3_-_75556759 0.01 ENSMUST00000162138.1
ENSMUST00000029424.5
ENSMUST00000161137.1
programmed cell death 10
chr9_-_43105718 0.01 ENSMUST00000165665.1
Rho guanine nucleotide exchange factor (GEF) 12
chr7_-_17056669 0.00 ENSMUST00000037762.4
hypoxia inducible factor 3, alpha subunit
chr12_-_108893197 0.00 ENSMUST00000161154.1
ENSMUST00000161410.1
tryptophanyl-tRNA synthetase
chr1_-_36369173 0.00 ENSMUST00000010597.3
KAT8 regulatory NSL complex subunit 3
chr3_+_152210458 0.00 ENSMUST00000166984.1
ENSMUST00000106121.1
far upstream element (FUSE) binding protein 1
chr5_+_138255608 0.00 ENSMUST00000062067.6
late endosomal/lysosomal adaptor, MAPK and MTOR activator 4
chr2_+_120977017 0.00 ENSMUST00000067582.7
transmembrane protein 62
chr6_-_124542281 0.00 ENSMUST00000159463.1
ENSMUST00000162844.1
ENSMUST00000160505.1
ENSMUST00000162443.1
complement component 1, s subcomponent
chr9_+_54586450 0.00 ENSMUST00000167866.1
isocitrate dehydrogenase 3 (NAD+) alpha
chr17_-_32388885 0.00 ENSMUST00000087703.5
ENSMUST00000170603.1
widely-interspaced zinc finger motifs
chr2_-_5845164 0.00 ENSMUST00000043864.3
cell division cycle 123
chr18_+_36528145 0.00 ENSMUST00000074298.6
ENSMUST00000115694.2
solute carrier family 4, sodium bicarbonate cotransporter, member 9

Network of associatons between targets according to the STRING database.

First level regulatory network of Rara

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0021941 radial glia guided migration of cerebellar granule cell(GO:0021933) negative regulation of cerebellar granule cell precursor proliferation(GO:0021941)
0.0 0.1 GO:0060010 Sertoli cell fate commitment(GO:0060010)
0.0 0.1 GO:0045200 establishment or maintenance of neuroblast polarity(GO:0045196) establishment of neuroblast polarity(GO:0045200)
0.0 0.1 GO:0060523 Sertoli cell proliferation(GO:0060011) prostate epithelial cord elongation(GO:0060523)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0034991 nuclear meiotic cohesin complex(GO:0034991)
0.0 0.1 GO:0097550 transcriptional preinitiation complex(GO:0097550)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0031798 type 1 metabotropic glutamate receptor binding(GO:0031798)
0.0 0.2 GO:0017151 DEAD/H-box RNA helicase binding(GO:0017151)
0.0 0.0 GO:0046923 ER retention sequence binding(GO:0046923)