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2D miR_HR1_12

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Results for Hoxb1

Z-value: 0.37

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Transcription factors associated with Hoxb1

Gene Symbol Gene ID Gene Info
ENSMUSG00000018973.2 homeobox B1

Activity profile of Hoxb1 motif

Sorted Z-values of Hoxb1 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr9_+_65890237 1.12 ENSMUST00000045802.6
RIKEN cDNA 2810417H13 gene
chr7_+_73391160 0.68 ENSMUST00000128471.1
RGM domain family, member A
chr4_-_91399984 0.50 ENSMUST00000102799.3
ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
chr7_-_78577771 0.34 ENSMUST00000039438.7
neurotrophic tyrosine kinase, receptor, type 3
chr1_+_127306706 0.34 ENSMUST00000171405.1
mannoside acetylglucosaminyltransferase 5
chr3_+_58526303 0.29 ENSMUST00000138848.1
eukaryotic translation initiation factor 2A
chr8_-_105471481 0.26 ENSMUST00000014990.6
tubulin polymerization-promoting protein family member 3
chr7_-_97417730 0.26 ENSMUST00000043077.7
thyroid hormone responsive
chr18_-_56562261 0.25 ENSMUST00000066208.6
ENSMUST00000172734.1
aldehyde dehydrogenase family 7, member A1
chr14_-_69284982 0.24 ENSMUST00000183882.1
ENSMUST00000037064.4
solute carrier family 25, member 37
chr7_+_48789003 0.23 ENSMUST00000118927.1
ENSMUST00000125280.1
zinc finger, DHHC domain containing 13
chr18_-_56562215 0.23 ENSMUST00000170309.1
aldehyde dehydrogenase family 7, member A1
chr18_+_56562443 0.22 ENSMUST00000130163.1
ENSMUST00000132628.1
phosphorylated adaptor for RNA export
chr10_+_127677064 0.21 ENSMUST00000118612.1
ENSMUST00000048099.4
transmembrane protein 194
chr3_+_58525821 0.20 ENSMUST00000029387.8
eukaryotic translation initiation factor 2A
chr14_-_18893376 0.20 ENSMUST00000151926.1
ubiquitin-conjugating enzyme E2E 2
chr7_-_45466894 0.19 ENSMUST00000033093.8
BCL2-associated X protein
chr2_+_147012996 0.19 ENSMUST00000028921.5
5'-3' exoribonuclease 2
chr7_+_101321703 0.18 ENSMUST00000174291.1
ENSMUST00000167888.2
ENSMUST00000172662.1
ENSMUST00000173270.1
ENSMUST00000174083.1
START domain containing 10
chr18_-_56562187 0.17 ENSMUST00000171844.2
aldehyde dehydrogenase family 7, member A1
chr18_+_42511496 0.16 ENSMUST00000025375.7
transcription elongation regulator 1 (CA150)
chr19_+_4003334 0.16 ENSMUST00000025806.3
double C2, gamma
chr14_-_69503316 0.13 ENSMUST00000179116.2
predicted gene, 21464
chr17_+_26941420 0.12 ENSMUST00000081285.3
ENSMUST00000177932.1
synaptic Ras GTPase activating protein 1 homolog (rat)
chr8_-_83458386 0.12 ENSMUST00000081506.3
short coiled-coil protein
chr11_-_69549108 0.10 ENSMUST00000108659.1
dynein, axonemal, heavy chain 2
chr11_-_40755201 0.10 ENSMUST00000020576.7
cyclin G1
chr3_-_88762244 0.10 ENSMUST00000183267.1
synaptotagmin XI
chr10_+_38965515 0.09 ENSMUST00000019992.5
laminin, alpha 4
chr1_-_135688094 0.09 ENSMUST00000112103.1
neuron navigator 1
chr6_-_87533219 0.09 ENSMUST00000113637.2
ENSMUST00000071024.6
Rho GTPase activating protein 25
chr10_+_67185730 0.08 ENSMUST00000173689.1
jumonji domain containing 1C
chr2_+_124610573 0.07 ENSMUST00000103239.3
ENSMUST00000103240.2
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
chr19_-_41743665 0.07 ENSMUST00000025993.3
slit homolog 1 (Drosophila)
chr8_-_117673682 0.07 ENSMUST00000173522.1
ENSMUST00000174450.1
short chain dehydrogenase/reductase family 42E, member 1
chr16_-_56024628 0.07 ENSMUST00000119981.1
ENSMUST00000096021.3
PEST proteolytic signal containing nuclear protein
chr11_-_98022594 0.07 ENSMUST00000103144.3
ENSMUST00000017552.6
ENSMUST00000092736.4
ENSMUST00000107562.1
calcium channel, voltage-dependent, beta 1 subunit
chr12_+_38780284 0.06 ENSMUST00000162563.1
ENSMUST00000161164.1
ENSMUST00000160996.1
ets variant gene 1
chr6_+_142413441 0.06 ENSMUST00000088263.4
RIKEN cDNA B230216G23 gene
chr4_+_109235632 0.05 ENSMUST00000030285.7
calreticulin 4
chr11_+_75486813 0.05 ENSMUST00000018449.4
ENSMUST00000102510.1
ENSMUST00000131283.1
pre-mRNA processing factor 8
chr11_+_96351632 0.04 ENSMUST00000100523.5
homeobox B2
chrX_+_20617503 0.04 ENSMUST00000115375.1
ENSMUST00000115374.1
ENSMUST00000084383.3
RNA binding motif protein 10
chr9_-_108083330 0.04 ENSMUST00000159372.1
ENSMUST00000160249.1
ring finger protein 123
chr8_+_84901928 0.04 ENSMUST00000067060.7
Kruppel-like factor 1 (erythroid)
chr15_+_74516196 0.04 ENSMUST00000042035.9
brain-specific angiogenesis inhibitor 1
chrX_+_143518671 0.03 ENSMUST00000134402.1
p21 protein (Cdc42/Rac)-activated kinase 3
chr3_-_7613427 0.03 ENSMUST00000168269.2
interleukin 7
chr5_+_37735519 0.02 ENSMUST00000073554.3
cytokine-like 1
chr2_+_65845833 0.02 ENSMUST00000053910.3
cysteine-serine-rich nuclear protein 3
chr4_+_109235413 0.02 ENSMUST00000106628.1
calreticulin 4
chr6_-_136875794 0.02 ENSMUST00000032342.1
matrix Gla protein
chr2_-_148045891 0.01 ENSMUST00000109964.1
forkhead box A2
chr17_-_85688252 0.01 ENSMUST00000024947.7
ENSMUST00000163568.2
sine oculis-related homeobox 2
chr2_+_119972699 0.01 ENSMUST00000066058.7
mitogen-activated protein kinase binding protein 1
chrX_+_110814390 0.01 ENSMUST00000078229.3
POU domain, class 3, transcription factor 4
chr10_-_88605017 0.01 ENSMUST00000119185.1
ENSMUST00000121629.1
myosin binding protein C, slow-type
chr12_-_27160311 0.01 ENSMUST00000182473.1
ENSMUST00000177636.1
ENSMUST00000183238.1
predicted gene 9866
chr2_+_65845767 0.01 ENSMUST00000122912.1
cysteine-serine-rich nuclear protein 3
chr10_-_127666598 0.01 ENSMUST00000099157.3
Ngfi-A binding protein 2
chr7_+_123982799 0.00 ENSMUST00000106437.1
heparan sulfate (glucosamine) 3-O-sulfotransferase 4
chr6_-_28126125 0.00 ENSMUST00000115324.2
ENSMUST00000090512.3
glutamate receptor, metabotropic 8
chr4_+_58285930 0.00 ENSMUST00000081919.5
ENSMUST00000102893.3
ENSMUST00000084578.5
ENSMUST00000098057.3
ENSMUST00000179951.1
ENSMUST00000098059.3
ENSMUST00000177951.1
muscle, skeletal, receptor tyrosine kinase
chr1_+_178798438 0.00 ENSMUST00000160789.1
kinesin family member 26B
chr1_+_153665274 0.00 ENSMUST00000152114.1
ENSMUST00000111812.1
regulator of G-protein signaling 8

Network of associatons between targets according to the STRING database.

First level regulatory network of Hoxb1

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0048691 positive regulation of sprouting of injured axon(GO:0048687) positive regulation of axon extension involved in regeneration(GO:0048691)
0.1 0.5 GO:1990928 response to amino acid starvation(GO:1990928)
0.1 0.2 GO:0051030 snRNA transport(GO:0051030)
0.1 0.2 GO:0002352 B cell negative selection(GO:0002352) regulation of mitochondrial membrane permeability involved in programmed necrotic cell death(GO:1902445)
0.0 0.7 GO:1900121 negative regulation of receptor binding(GO:1900121)
0.0 0.2 GO:0000738 DNA catabolic process, exonucleolytic(GO:0000738)
0.0 0.1 GO:1990927 calcium ion regulated lysosome exocytosis(GO:1990927)
0.0 0.2 GO:0035360 positive regulation of peroxisome proliferator activated receptor signaling pathway(GO:0035360)
0.0 0.2 GO:0032020 ISG15-protein conjugation(GO:0032020)
0.0 0.1 GO:0033563 dorsal/ventral axon guidance(GO:0033563)
0.0 0.1 GO:0061635 regulation of protein complex stability(GO:0061635)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0005850 eukaryotic translation initiation factor 2 complex(GO:0005850)
0.0 0.3 GO:0097427 microtubule bundle(GO:0097427)
0.0 0.2 GO:0097136 Bcl-2 family protein complex(GO:0097136)
0.0 0.2 GO:0046581 intercellular canaliculus(GO:0046581)
0.0 0.1 GO:0036156 inner dynein arm(GO:0036156)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0008802 betaine-aldehyde dehydrogenase activity(GO:0008802)
0.1 0.3 GO:0030144 alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity(GO:0030144)
0.1 0.2 GO:0001147 transcription termination site sequence-specific DNA binding(GO:0001147) transcription termination site DNA binding(GO:0001160) 5'-3' exoribonuclease activity(GO:0004534)
0.1 0.3 GO:0005030 neurotrophin receptor activity(GO:0005030)
0.0 0.7 GO:1990459 transferrin receptor binding(GO:1990459)
0.0 0.2 GO:0042296 ISG15 transferase activity(GO:0042296)
0.0 0.2 GO:0015093 ferrous iron transmembrane transporter activity(GO:0015093)
0.0 0.2 GO:0051434 BH3 domain binding(GO:0051434)
0.0 0.1 GO:0000386 second spliceosomal transesterification activity(GO:0000386)
0.0 0.2 GO:0015643 toxic substance binding(GO:0015643)
0.0 0.2 GO:0015095 magnesium ion transmembrane transporter activity(GO:0015095)
0.0 0.1 GO:0048495 Roundabout binding(GO:0048495)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.7 PID BMP PATHWAY BMP receptor signaling

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 REACTOME N GLYCAN ANTENNAE ELONGATION Genes involved in N-Glycan antennae elongation
0.0 0.7 REACTOME NETRIN1 SIGNALING Genes involved in Netrin-1 signaling