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2D miR_HR1_12

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Results for Gcm1

Z-value: 0.34

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Transcription factors associated with Gcm1

Gene Symbol Gene ID Gene Info
ENSMUSG00000023333.7 glial cells missing homolog 1

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Gcm1mm10_v2_chr9_+_78051938_78051958-0.613.5e-02Click!

Activity profile of Gcm1 motif

Sorted Z-values of Gcm1 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr17_-_32189457 0.45 ENSMUST00000087721.3
ENSMUST00000162117.1
epoxide hydrolase 3
chr12_-_119238794 0.37 ENSMUST00000026360.8
integrin beta 8
chr4_-_42661893 0.34 ENSMUST00000108006.3
interleukin 11 receptor, alpha chain 2
chrX_+_93286499 0.34 ENSMUST00000046565.7
ENSMUST00000113947.2
aristaless related homeobox
chr17_+_23679363 0.26 ENSMUST00000024699.2
claudin 6
chr15_-_75747922 0.25 ENSMUST00000062002.4
v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)
chr5_+_102724971 0.25 ENSMUST00000112853.1
Rho GTPase activating protein 24
chr19_+_53529100 0.21 ENSMUST00000038287.6
dual specificity phosphatase 5
chr16_-_91597636 0.20 ENSMUST00000023686.8
transmembrane protein 50B
chr17_-_6948283 0.20 ENSMUST00000024572.9
radial spoke 3B homolog (Chlamydomonas)
chr7_-_44997535 0.18 ENSMUST00000124232.1
ENSMUST00000003290.4
BCL2-like 12 (proline rich)
chr10_-_76345254 0.17 ENSMUST00000036033.7
ENSMUST00000160048.1
ENSMUST00000105417.3
DIP2 disco-interacting protein 2 homolog A (Drosophila)
chr17_+_24696234 0.16 ENSMUST00000019464.7
NADPH oxidase organizer 1
chr6_-_124636085 0.16 ENSMUST00000068797.2
predicted gene 5077
chr4_-_116167591 0.16 ENSMUST00000030465.3
ENSMUST00000143426.1
tetraspanin 1
chr19_+_6400523 0.15 ENSMUST00000146831.1
ENSMUST00000035716.8
ENSMUST00000138555.1
ENSMUST00000167240.1
RAS, guanyl releasing protein 2
chr9_+_5345414 0.15 ENSMUST00000027009.4
caspase 12
chr13_+_100108155 0.14 ENSMUST00000129014.1
small EDRK-rich factor 1
chr2_+_128126030 0.14 ENSMUST00000089634.5
ENSMUST00000019281.7
ENSMUST00000110341.2
ENSMUST00000103211.1
ENSMUST00000103210.1
BCL2-like 11 (apoptosis facilitator)
chr3_+_107230608 0.14 ENSMUST00000179399.1
RIKEN cDNA A630076J17 gene
chr7_-_45136102 0.14 ENSMUST00000125500.1
FMS-like tyrosine kinase 3 ligand
chr7_-_45136056 0.13 ENSMUST00000130628.1
FMS-like tyrosine kinase 3 ligand
chr3_-_69598822 0.13 ENSMUST00000061826.1
UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1
chr5_-_110343009 0.12 ENSMUST00000058016.9
ENSMUST00000112478.3
purinergic receptor P2X, ligand-gated ion channel, 2
chr2_+_169633517 0.12 ENSMUST00000109157.1
teashirt zinc finger family member 2
chr8_-_45358737 0.12 ENSMUST00000155230.1
ENSMUST00000135912.1
family with sequence similarity 149, member A
chr9_-_107605295 0.11 ENSMUST00000102529.3
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
chr11_+_101246960 0.11 ENSMUST00000107282.3
receptor (calcitonin) activity modifying protein 2
chr15_-_83251720 0.10 ENSMUST00000164614.1
ENSMUST00000049530.6
alpha 1,4-galactosyltransferase
chr16_-_3907651 0.10 ENSMUST00000177221.1
ENSMUST00000177323.1
RIKEN cDNA 1700037C18 gene
chr7_-_45136391 0.10 ENSMUST00000146760.1
FMS-like tyrosine kinase 3 ligand
chr16_-_36874806 0.09 ENSMUST00000075946.5
ELL associated factor 2
chr10_-_75032528 0.09 ENSMUST00000159994.1
ENSMUST00000179546.1
ENSMUST00000160450.1
ENSMUST00000160072.1
ENSMUST00000009214.3
ENSMUST00000166088.1
rhabdoid tumor deletion region gene 1
chr7_-_29906524 0.08 ENSMUST00000159920.1
ENSMUST00000162592.1
zinc finger protein 27
chr17_+_8311101 0.07 ENSMUST00000154553.1
SFT2 domain containing 1
chr2_+_96318014 0.07 ENSMUST00000135431.1
ENSMUST00000162807.2
leucine rich repeat containing 4C
chr8_-_3720640 0.07 ENSMUST00000062037.6
C-type lectin domain family 4, member g
chr9_-_70657121 0.07 ENSMUST00000049031.5
family with sequence similarity 63, member B
chr9_+_107580117 0.06 ENSMUST00000093785.4
N-acetyltransferase 6
chr11_-_121354337 0.06 ENSMUST00000106110.3
ENSMUST00000136797.1
ENSMUST00000026173.6
WD repeat domain 45B
chr9_+_5345450 0.06 ENSMUST00000151332.1
caspase 12
chr6_-_52183828 0.06 ENSMUST00000134831.1
homeobox A3
chr1_+_43092588 0.06 ENSMUST00000039080.3
RIKEN cDNA 8430432A02 gene
chr11_-_73199013 0.06 ENSMUST00000006103.2
ENSMUST00000108476.1
cystinosis, nephropathic
chr7_-_68264201 0.06 ENSMUST00000032770.2
pyroglutamyl-peptidase I-like
chr7_+_4922251 0.05 ENSMUST00000047309.5
N-acetyltransferase 14
chr8_-_105979413 0.05 ENSMUST00000034371.7
dipeptidase 3
chr7_-_101011976 0.05 ENSMUST00000178340.1
ENSMUST00000037540.3
purinergic receptor P2Y, G-protein coupled 2
chr15_+_79348061 0.05 ENSMUST00000163691.1
v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)
chr7_+_44997648 0.05 ENSMUST00000003284.8
ENSMUST00000107835.1
interferon regulatory factor 3
chrX_+_7657260 0.05 ENSMUST00000033485.7
prickle homolog 3 (Drosophila)
chr16_+_36875119 0.05 ENSMUST00000135406.1
ENSMUST00000114812.1
ENSMUST00000134616.1
ENSMUST00000023534.6
golgi autoantigen, golgin subfamily b, macrogolgin 1
golgi autoantigen, golgin subfamily b, macrogolgin 1
chr8_-_124949165 0.05 ENSMUST00000034469.5
EGL nine homolog 1 (C. elegans)
chr2_+_48814109 0.04 ENSMUST00000063886.3
activin receptor IIA
chr11_+_116918844 0.04 ENSMUST00000103027.3
mannoside acetylglucosaminyltransferase 5, isoenzyme B
chr8_+_91070052 0.04 ENSMUST00000034091.7
retinoblastoma-like 2
chr2_-_180225812 0.04 ENSMUST00000015791.5
laminin, alpha 5
chr10_+_80148263 0.04 ENSMUST00000099492.3
ENSMUST00000042057.5
midnolin
chr2_-_39226343 0.04 ENSMUST00000028087.3
protein phosphatase 6, catalytic subunit
chr11_+_120491840 0.04 ENSMUST00000026899.3
solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10
chr16_+_38902305 0.04 ENSMUST00000023478.7
immunoglobulin superfamily, member 11
chr7_+_78913765 0.04 ENSMUST00000038142.8
interferon-stimulated protein
chr4_-_156234777 0.03 ENSMUST00000105569.3
kelch-like 17
chr7_+_46396439 0.03 ENSMUST00000025202.6
potassium voltage gated channel, Shaw-related subfamily, member 1
chr1_+_40681659 0.02 ENSMUST00000027231.7
solute carrier family 9 (sodium/hydrogen exchanger), member 2
chr11_-_60352869 0.02 ENSMUST00000095254.5
ENSMUST00000102683.4
ENSMUST00000093048.6
ENSMUST00000093046.6
ENSMUST00000064019.8
ENSMUST00000102682.4
target of myb1-like 2 (chicken)
chr19_+_46761578 0.02 ENSMUST00000077666.4
ENSMUST00000099373.4
cyclin M2
chr13_-_95250166 0.02 ENSMUST00000162153.1
ENSMUST00000160957.2
ENSMUST00000159598.1
ENSMUST00000162412.1
phosphodiesterase 8B
chr13_+_107031963 0.02 ENSMUST00000095459.1
RIKEN cDNA 3830408C21 gene
chr10_+_75564086 0.02 ENSMUST00000141062.1
ENSMUST00000152657.1
gamma-glutamyltransferase 1
chr1_-_79761752 0.02 ENSMUST00000113512.1
ENSMUST00000113513.1
ENSMUST00000113515.1
ENSMUST00000113514.1
ENSMUST00000113510.1
ENSMUST00000113511.1
ENSMUST00000048820.7
WD repeat and FYVE domain containing 1
chr5_-_35105691 0.02 ENSMUST00000030986.8
low density lipoprotein receptor-related protein associated protein 1
chr13_+_55369732 0.01 ENSMUST00000063771.7
regulator of G-protein signaling 14
chr11_-_75454656 0.01 ENSMUST00000173320.1
WD repeat domain 81
chr16_-_16869255 0.01 ENSMUST00000075017.4
pre-B lymphocyte gene 1
chr12_+_8674224 0.01 ENSMUST00000111122.2
pumilio 2 (Drosophila)
chr10_-_13868779 0.01 ENSMUST00000105534.3
androgen-induced 1
chr13_+_8202922 0.01 ENSMUST00000123187.1
adenosine deaminase, RNA-specific, B2
chr6_+_52177498 0.01 ENSMUST00000070587.3
RIKEN cDNA 5730596B20 gene
chr17_+_25471564 0.01 ENSMUST00000025002.1
tektin 4
chr13_+_100107997 0.00 ENSMUST00000142155.1
ENSMUST00000022145.8
ENSMUST00000132053.1
small EDRK-rich factor 1
chr14_-_66213552 0.00 ENSMUST00000178730.1
PTK2 protein tyrosine kinase 2 beta
chr11_-_6065538 0.00 ENSMUST00000101585.3
ENSMUST00000066431.7
ENSMUST00000109815.2
ENSMUST00000109812.2
ENSMUST00000101586.2
ENSMUST00000093355.5
ENSMUST00000019133.4
calcium/calmodulin-dependent protein kinase II, beta
chrX_+_73503074 0.00 ENSMUST00000114479.1
ENSMUST00000088429.1
ENSMUST00000033744.5
ATPase, Ca++ transporting, plasma membrane 3
chr2_+_105904629 0.00 ENSMUST00000037499.5
IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)
chr7_+_29519158 0.00 ENSMUST00000141713.1
RIKEN cDNA 4932431P20 gene
chr19_+_6400611 0.00 ENSMUST00000113467.1
RAS, guanyl releasing protein 2
chr9_+_88956920 0.00 ENSMUST00000098485.2
B cell leukemia/lymphoma 2 related protein A1a
chr2_-_105904484 0.00 ENSMUST00000122965.1
elongation protein 4 homolog (S. cerevisiae)

Network of associatons between targets according to the STRING database.

First level regulatory network of Gcm1

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0021759 globus pallidus development(GO:0021759)
0.0 0.1 GO:1902263 apoptotic process involved in embryonic digit morphogenesis(GO:1902263)
0.0 0.2 GO:0035021 negative regulation of Rac protein signal transduction(GO:0035021)
0.0 0.1 GO:0090290 positive regulation of osteoclast proliferation(GO:0090290)
0.0 0.1 GO:0000101 sulfur amino acid transport(GO:0000101)
0.0 0.2 GO:1902166 negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator(GO:1902166)
0.0 0.4 GO:0001573 ganglioside metabolic process(GO:0001573)
0.0 0.1 GO:0001575 globoside metabolic process(GO:0001575)
0.0 0.2 GO:0097264 self proteolysis(GO:0097264)
0.0 0.0 GO:0033122 negative regulation of purine nucleotide catabolic process(GO:0033122)
0.0 0.0 GO:0046881 positive regulation of follicle-stimulating hormone secretion(GO:0046881)
0.0 0.1 GO:0097646 calcitonin family receptor signaling pathway(GO:0097646) amylin receptor signaling pathway(GO:0097647)
0.0 0.2 GO:0035970 peptidyl-threonine dephosphorylation(GO:0035970)
0.0 0.0 GO:0045358 negative regulation of interferon-beta biosynthetic process(GO:0045358)
0.0 0.2 GO:0007263 nitric oxide mediated signal transduction(GO:0007263)
0.0 0.1 GO:0030432 peristalsis(GO:0030432)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0032783 ELL-EAF complex(GO:0032783)
0.0 0.1 GO:1903439 calcitonin family receptor complex(GO:1903439) amylin receptor complex(GO:1903440)
0.0 0.2 GO:0043020 NADPH oxidase complex(GO:0043020)
0.0 0.0 GO:0034673 inhibin-betaglycan-ActRII complex(GO:0034673)
0.0 0.1 GO:0097136 Bcl-2 family protein complex(GO:0097136)
0.0 0.0 GO:0043259 laminin-5 complex(GO:0005610) laminin-10 complex(GO:0043259)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:1990430 extracellular matrix protein binding(GO:1990430)
0.0 0.3 GO:0001206 transcriptional repressor activity, RNA polymerase II distal enhancer sequence-specific binding(GO:0001206)
0.0 0.1 GO:0045340 mercury ion binding(GO:0045340)
0.0 0.1 GO:0097643 amylin receptor activity(GO:0097643)
0.0 0.2 GO:0016176 superoxide-generating NADPH oxidase activator activity(GO:0016176)
0.0 0.1 GO:0031686 A1 adenosine receptor binding(GO:0031686)
0.0 0.2 GO:0097153 cysteine-type endopeptidase activity involved in apoptotic process(GO:0097153)
0.0 0.1 GO:0008499 UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity(GO:0008499)
0.0 0.2 GO:0017017 MAP kinase tyrosine/serine/threonine phosphatase activity(GO:0017017)
0.0 0.0 GO:0015140 malate transmembrane transporter activity(GO:0015140)
0.0 0.1 GO:0000099 sulfur amino acid transmembrane transporter activity(GO:0000099)
0.0 0.3 GO:0001618 virus receptor activity(GO:0001618)
0.0 0.0 GO:0031208 POZ domain binding(GO:0031208)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.4 PID INTEGRIN5 PATHWAY Beta5 beta6 beta7 and beta8 integrin cell surface interactions