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2D miR_HR1_12

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Results for Hoxa1

Z-value: 1.01

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Transcription factors associated with Hoxa1

Gene Symbol Gene ID Gene Info
ENSMUSG00000029844.9 homeobox A1

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Hoxa1mm10_v2_chr6_-_52158292_521583240.136.9e-01Click!

Activity profile of Hoxa1 motif

Sorted Z-values of Hoxa1 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr9_-_96862903 6.11 ENSMUST00000121077.1
ENSMUST00000124923.1
acid phosphatase-like 2
chr10_+_81628570 3.51 ENSMUST00000153573.1
ENSMUST00000119336.1
ankyrin repeat domain 24
chr13_-_12340723 3.24 ENSMUST00000168193.1
ENSMUST00000110616.1
ENSMUST00000064204.7
actinin alpha 2
chr9_+_15239045 2.99 ENSMUST00000034413.6
V-set and transmembrane domain containing 5
chr4_-_143299498 2.14 ENSMUST00000030317.7
podoplanin
chr2_+_158375638 2.10 ENSMUST00000109488.1
small nucleolar RNA host gene 11
chr17_+_70522083 1.42 ENSMUST00000148486.1
ENSMUST00000133717.1
discs, large (Drosophila) homolog-associated protein 1
chr5_+_137030275 1.39 ENSMUST00000041543.8
VGF nerve growth factor inducible
chr2_+_163225363 1.10 ENSMUST00000099110.3
ENSMUST00000165937.1
TOX high mobility group box family member 2
chr3_-_89093358 1.03 ENSMUST00000090929.5
ENSMUST00000052539.6
RUN and SH3 domain containing 1
chr4_-_106799779 1.00 ENSMUST00000145061.1
ENSMUST00000102762.3
acyl-CoA thioesterase 11
chr7_+_123462274 0.94 ENSMUST00000033023.3
aquaporin 8
chr4_-_106800249 0.89 ENSMUST00000148688.1
acyl-CoA thioesterase 11
chr6_-_52012476 0.79 ENSMUST00000078214.5
src family associated phosphoprotein 2
chr2_+_90885860 0.77 ENSMUST00000111466.2
C1q and tumor necrosis factor related protein 4
chr9_+_59589288 0.72 ENSMUST00000121266.1
ENSMUST00000118164.1
CUGBP, Elav-like family member 6
chr17_+_70522149 0.71 ENSMUST00000140728.1
discs, large (Drosophila) homolog-associated protein 1
chr5_-_135573036 0.70 ENSMUST00000004936.6
chemokine (C-C motif) ligand 24
chr4_-_143299463 0.69 ENSMUST00000119654.1
podoplanin
chr13_+_72628802 0.67 ENSMUST00000074372.4
Iroquois related homeobox 2 (Drosophila)
chr11_-_99244058 0.66 ENSMUST00000103132.3
ENSMUST00000038214.6
keratin 222
chr5_-_107289561 0.63 ENSMUST00000031224.8
transforming growth factor, beta receptor III
chr6_-_52191695 0.59 ENSMUST00000101395.2
homeobox A4
chr14_+_56575603 0.58 ENSMUST00000161553.1
poly (ADP-ribose) polymerase family, member 4
chr9_-_101034857 0.56 ENSMUST00000142676.1
ENSMUST00000149322.1
propionyl Coenzyme A carboxylase, beta polypeptide
chr6_+_40442863 0.54 ENSMUST00000038907.8
ENSMUST00000141490.1
WEE1 homolog 2 (S. pombe)
chr10_+_75037291 0.48 ENSMUST00000139384.1
RAB36, member RAS oncogene family
chr15_-_53346118 0.46 ENSMUST00000077273.2
exostoses (multiple) 1
chr6_-_21851914 0.45 ENSMUST00000134635.1
ENSMUST00000123116.1
ENSMUST00000120965.1
tetraspanin 12
chr11_+_62281457 0.44 ENSMUST00000101075.4
ENSMUST00000050646.6
tetratricopeptide repeat domain 19
chr11_-_102296618 0.44 ENSMUST00000107132.2
ENSMUST00000073234.2
ataxin 7-like 3
chr6_+_48395586 0.43 ENSMUST00000114571.1
ENSMUST00000114572.3
ENSMUST00000031815.5
KRAB-A domain containing 1
chr4_+_43669610 0.42 ENSMUST00000107866.1
transmembrane protein 8B
chr17_-_90455872 0.41 ENSMUST00000174337.1
ENSMUST00000172466.1
neurexin I
chr6_+_49319274 0.41 ENSMUST00000055559.7
ENSMUST00000114491.1
coiled-coil domain containing 126
chrX_+_56454871 0.41 ENSMUST00000039374.2
ENSMUST00000101553.2
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B
chr6_+_48395652 0.41 ENSMUST00000077093.4
KRAB-A domain containing 1
chr11_-_116189542 0.40 ENSMUST00000148601.1
acyl-Coenzyme A oxidase 1, palmitoyl
chr5_-_145201829 0.40 ENSMUST00000162220.1
ENSMUST00000031632.8
zinc finger with KRAB and SCAN domains 14
chr5_-_137684665 0.38 ENSMUST00000100544.4
ENSMUST00000031736.9
ENSMUST00000151839.1
ArfGAP with FG repeats 2
chr8_-_8639363 0.38 ENSMUST00000152698.1
ephrin B2
chr14_+_66344369 0.37 ENSMUST00000118426.1
ENSMUST00000121955.1
ENSMUST00000120229.1
ENSMUST00000134440.1
stathmin-like 4
chr5_-_143732273 0.36 ENSMUST00000053287.5
ubiquitin specific peptidase 42
chr1_-_157412576 0.36 ENSMUST00000078308.6
ENSMUST00000139470.1
RAS protein activator like 2
chrX_-_134161928 0.36 ENSMUST00000033611.4
X Kell blood group precursor related X linked
chr3_-_58525867 0.36 ENSMUST00000029385.7
stress-associated endoplasmic reticulum protein 1
chr10_+_26078255 0.36 ENSMUST00000041011.3
predicted gene 9767
chr2_+_165595009 0.34 ENSMUST00000088132.6
eyes absent 2 homolog (Drosophila)
chr3_-_79145875 0.33 ENSMUST00000118340.1
Rap guanine nucleotide exchange factor (GEF) 2
chr1_-_119053339 0.32 ENSMUST00000161301.1
ENSMUST00000161451.1
ENSMUST00000162607.1
GLI-Kruppel family member GLI2
chr3_+_55782500 0.30 ENSMUST00000075422.4
mab-21-like 1 (C. elegans)
chr6_+_71494003 0.30 ENSMUST00000114179.2
ring finger protein 103
chr16_+_23107413 0.27 ENSMUST00000023599.6
ENSMUST00000168891.1
eukaryotic translation initiation factor 4A2
chr6_+_142298419 0.26 ENSMUST00000041993.2
islet amyloid polypeptide
chr10_-_81545175 0.26 ENSMUST00000043604.5
guanine nucleotide binding protein, alpha 11
chr10_+_79988584 0.26 ENSMUST00000004784.4
ENSMUST00000105374.1
calponin 2
chr3_-_89393629 0.25 ENSMUST00000124783.1
ENSMUST00000126027.1
zinc finger and BTB domain containing 7B
chrX_-_75578188 0.25 ENSMUST00000033545.5
RAB39B, member RAS oncogene family
chr2_+_36230426 0.24 ENSMUST00000062069.5
prostaglandin-endoperoxide synthase 1
chr15_-_95528702 0.23 ENSMUST00000166170.1
NEL-like 2
chr12_+_8012359 0.23 ENSMUST00000171239.1
apolipoprotein B
chr14_+_66344296 0.23 ENSMUST00000152093.1
ENSMUST00000074523.6
stathmin-like 4
chr1_+_10993452 0.22 ENSMUST00000027056.5
phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
chr10_+_81628540 0.22 ENSMUST00000123896.1
ankyrin repeat domain 24
chr17_-_25081138 0.22 ENSMUST00000024984.6
transmembrane protein 204
chr5_+_88583527 0.20 ENSMUST00000031229.6
RUN and FYVE domain containing 3
chr18_-_13972617 0.20 ENSMUST00000025288.7
zinc finger protein 521
chr17_-_51826562 0.18 ENSMUST00000024720.4
ENSMUST00000129667.1
ENSMUST00000156051.1
ENSMUST00000169480.1
ENSMUST00000148559.1
special AT-rich sequence binding protein 1
chr8_-_105484350 0.18 ENSMUST00000044286.5
zinc finger, DHHC domain containing 1
chrX_-_150812932 0.17 ENSMUST00000131241.1
ENSMUST00000147152.1
ENSMUST00000143843.1
melanoma antigen, family D, 2
chr16_+_38902305 0.17 ENSMUST00000023478.7
immunoglobulin superfamily, member 11
chrX_-_150813637 0.16 ENSMUST00000112700.1
melanoma antigen, family D, 2
chr4_+_119814495 0.14 ENSMUST00000106307.2
human immunodeficiency virus type I enhancer binding protein 3
chr1_-_45503282 0.14 ENSMUST00000086430.4
collagen, type V, alpha 2
chr5_-_123749393 0.13 ENSMUST00000057795.5
ENSMUST00000111515.1
ENSMUST00000182309.1
arginine/serine-rich coiled-coil 2
chr11_+_96351632 0.13 ENSMUST00000100523.5
homeobox B2
chr11_+_103774150 0.12 ENSMUST00000000127.5
wingless-related MMTV integration site 3
chr9_-_21312255 0.12 ENSMUST00000115433.3
ENSMUST00000003397.7
adaptor protein complex AP-1, mu 2 subunit
chr11_-_40755201 0.12 ENSMUST00000020576.7
cyclin G1
chr6_+_91684061 0.11 ENSMUST00000032185.7
solute carrier family 6 (neurotransmitter transporter, taurine), member 6
chr1_+_89454769 0.11 ENSMUST00000027521.8
ENSMUST00000074945.5
ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
chr1_+_153665274 0.09 ENSMUST00000152114.1
ENSMUST00000111812.1
regulator of G-protein signaling 8
chr15_+_89253035 0.08 ENSMUST00000088788.3
protein phosphatase 6, regulatory subunit 2
chr12_-_80260356 0.08 ENSMUST00000021554.8
actinin, alpha 1
chr13_+_99184733 0.07 ENSMUST00000056558.8
zinc finger protein 366
chr4_-_145315143 0.07 ENSMUST00000030339.6
tumor necrosis factor receptor superfamily, member 8
chr6_-_136875794 0.06 ENSMUST00000032342.1
matrix Gla protein
chr8_-_11312731 0.06 ENSMUST00000033898.9
collagen, type IV, alpha 1
chr5_+_43515513 0.05 ENSMUST00000167522.1
ENSMUST00000144558.1
ENSMUST00000076939.6
C1q and tumor necrosis factor related protein 7
chr1_+_153891646 0.04 ENSMUST00000050660.4
transmembrane epididymal protein 1
chrX_-_8132770 0.04 ENSMUST00000130832.1
ENSMUST00000033506.6
ENSMUST00000115623.1
ENSMUST00000153839.1
WD repeat domain 13
chr5_-_123749371 0.03 ENSMUST00000182955.1
ENSMUST00000182489.1
ENSMUST00000050827.7
arginine/serine-rich coiled-coil 2
chr11_-_5898771 0.03 ENSMUST00000102921.3
myosin, light polypeptide 7, regulatory
chr6_+_116506516 0.03 ENSMUST00000075756.2
olfactory receptor 212
chr2_+_119972699 0.03 ENSMUST00000066058.7
mitogen-activated protein kinase binding protein 1
chr3_+_114030532 0.02 ENSMUST00000123619.1
ENSMUST00000092155.5
collagen, type XI, alpha 1
chr13_+_31806627 0.01 ENSMUST00000062292.2
forkhead box C1
chr17_+_8434423 0.01 ENSMUST00000074667.2
brachyury

Network of associatons between targets according to the STRING database.

First level regulatory network of Hoxa1

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.9 2.8 GO:1904328 regulation of myofibroblast contraction(GO:1904328) myofibroblast contraction(GO:1990764)
0.8 3.2 GO:2001137 positive regulation of endocytic recycling(GO:2001137)
0.2 0.7 GO:2000418 positive regulation of eosinophil migration(GO:2000418)
0.2 0.6 GO:0007181 transforming growth factor beta receptor complex assembly(GO:0007181)
0.2 2.1 GO:0070842 aggresome assembly(GO:0070842)
0.1 0.9 GO:0015722 canalicular bile acid transport(GO:0015722)
0.1 0.5 GO:0072272 proximal/distal pattern formation involved in metanephric nephron development(GO:0072272)
0.1 0.3 GO:2000670 positive regulation of dendritic cell apoptotic process(GO:2000670)
0.1 0.4 GO:0090126 protein complex assembly involved in synapse maturation(GO:0090126)
0.1 0.4 GO:0033540 fatty acid beta-oxidation using acyl-CoA oxidase(GO:0033540)
0.1 0.3 GO:0021965 spinal cord ventral commissure morphogenesis(GO:0021965) notochord regression(GO:0060032)
0.1 1.2 GO:0043084 penile erection(GO:0043084)
0.1 0.5 GO:0015014 heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process(GO:0015014)
0.1 0.3 GO:0043376 regulation of CD8-positive, alpha-beta T cell differentiation(GO:0043376)
0.1 0.5 GO:0060631 regulation of meiosis I(GO:0060631) negative regulation of oocyte maturation(GO:1900194)
0.0 0.4 GO:1903849 regulation of aorta morphogenesis(GO:1903847) positive regulation of aorta morphogenesis(GO:1903849)
0.0 0.3 GO:0060158 phospholipase C-activating dopamine receptor signaling pathway(GO:0060158)
0.0 1.9 GO:0009409 response to cold(GO:0009409)
0.0 0.4 GO:0017062 respiratory chain complex III assembly(GO:0017062) mitochondrial respiratory chain complex III assembly(GO:0034551) mitochondrial respiratory chain complex III biogenesis(GO:0097033)
0.0 0.2 GO:0019371 cyclooxygenase pathway(GO:0019371) maintenance of blood-brain barrier(GO:0035633)
0.0 0.3 GO:0070294 renal sodium ion transport(GO:0003096) renal sodium ion absorption(GO:0070294)
0.0 0.1 GO:1903225 negative regulation of endodermal cell differentiation(GO:1903225)
0.0 0.3 GO:0097646 calcitonin family receptor signaling pathway(GO:0097646) amylin receptor signaling pathway(GO:0097647)
0.0 0.4 GO:0060124 positive regulation of growth hormone secretion(GO:0060124)
0.0 0.1 GO:0044339 canonical Wnt signaling pathway involved in osteoblast differentiation(GO:0044339) regulation of collateral sprouting in absence of injury(GO:0048696)
0.0 0.7 GO:0071625 vocalization behavior(GO:0071625)
0.0 0.2 GO:0006642 triglyceride mobilization(GO:0006642) positive regulation of cholesterol storage(GO:0010886)
0.0 0.1 GO:0021569 rhombomere 3 development(GO:0021569)
0.0 0.4 GO:0016578 histone deubiquitination(GO:0016578)
0.0 0.5 GO:0010842 retina layer formation(GO:0010842)
0.0 0.2 GO:0046543 development of secondary female sexual characteristics(GO:0046543)
0.0 0.2 GO:0043374 CD8-positive, alpha-beta T cell differentiation(GO:0043374)
0.0 0.3 GO:0097345 mitochondrial outer membrane permeabilization(GO:0097345)
0.0 0.2 GO:2000114 regulation of establishment of cell polarity(GO:2000114)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.9 GO:0046691 intracellular canaliculus(GO:0046691)
0.3 2.8 GO:0097197 tetraspanin-enriched microdomain(GO:0097197)
0.2 0.6 GO:0034673 inhibin-betaglycan-ActRII complex(GO:0034673)
0.1 3.2 GO:0005865 striated muscle thin filament(GO:0005865)
0.0 0.1 GO:0005588 collagen type V trimer(GO:0005588)
0.0 0.4 GO:0000124 SAGA complex(GO:0000124)
0.0 0.4 GO:0036057 filtration diaphragm(GO:0036056) slit diaphragm(GO:0036057)
0.0 0.2 GO:0031983 vesicle lumen(GO:0031983)
0.0 0.3 GO:0097542 ciliary tip(GO:0097542)
0.0 0.4 GO:0031235 intrinsic component of the cytoplasmic side of the plasma membrane(GO:0031235)
0.0 0.1 GO:0032127 dense core granule membrane(GO:0032127)
0.0 1.4 GO:0030667 secretory granule membrane(GO:0030667)
0.0 0.2 GO:0071437 invadopodium(GO:0071437)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 3.2 GO:0030375 thyroid hormone receptor coactivator activity(GO:0030375)
0.3 3.8 GO:0015250 water channel activity(GO:0015250)
0.2 0.7 GO:0031728 CCR3 chemokine receptor binding(GO:0031728)
0.2 0.6 GO:0004658 propionyl-CoA carboxylase activity(GO:0004658)
0.2 0.5 GO:0050508 glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity(GO:0050508)
0.1 0.3 GO:0031826 type 2A serotonin receptor binding(GO:0031826)
0.1 0.4 GO:0030144 alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity(GO:0030144)
0.1 0.6 GO:0005114 type II transforming growth factor beta receptor binding(GO:0005114)
0.1 0.4 GO:0016401 palmitoyl-CoA oxidase activity(GO:0016401)
0.1 1.9 GO:0047617 acyl-CoA hydrolase activity(GO:0047617)
0.1 1.4 GO:0005184 neuropeptide hormone activity(GO:0005184)
0.0 0.3 GO:0017034 Rap guanyl-nucleotide exchange factor activity(GO:0017034)
0.0 0.1 GO:0030977 taurine binding(GO:0030977)
0.0 0.4 GO:0097109 neuroligin family protein binding(GO:0097109)
0.0 0.2 GO:0035473 lipase binding(GO:0035473)
0.0 0.6 GO:0003950 NAD+ ADP-ribosyltransferase activity(GO:0003950)
0.0 0.5 GO:0042813 Wnt-activated receptor activity(GO:0042813)
0.0 0.8 GO:0005070 SH3/SH2 adaptor activity(GO:0005070)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.0 PID MAPK TRK PATHWAY Trk receptor signaling mediated by the MAPK pathway
0.0 0.3 PID THROMBIN PAR4 PATHWAY PAR4-mediated thrombin signaling events

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 2.9 REACTOME CREB PHOSPHORYLATION THROUGH THE ACTIVATION OF CAMKII Genes involved in CREB phosphorylation through the activation of CaMKII
0.1 0.9 REACTOME PASSIVE TRANSPORT BY AQUAPORINS Genes involved in Passive Transport by Aquaporins
0.0 0.8 REACTOME SIGNAL REGULATORY PROTEIN SIRP FAMILY INTERACTIONS Genes involved in Signal regulatory protein (SIRP) family interactions
0.0 0.6 REACTOME MITOCHONDRIAL FATTY ACID BETA OXIDATION Genes involved in Mitochondrial Fatty Acid Beta-Oxidation
0.0 0.3 REACTOME REGULATION OF INSULIN SECRETION BY ACETYLCHOLINE Genes involved in Regulation of Insulin Secretion by Acetylcholine
0.0 0.4 REACTOME ALPHA LINOLENIC ACID ALA METABOLISM Genes involved in alpha-linolenic acid (ALA) metabolism
0.0 0.5 REACTOME HS GAG BIOSYNTHESIS Genes involved in HS-GAG biosynthesis
0.0 0.2 REACTOME CHYLOMICRON MEDIATED LIPID TRANSPORT Genes involved in Chylomicron-mediated lipid transport