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2D miR_HR1_12

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Results for Hoxc6

Z-value: 0.23

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Transcription factors associated with Hoxc6

Gene Symbol Gene ID Gene Info
ENSMUSG00000001661.4 homeobox C6

Activity profile of Hoxc6 motif

Sorted Z-values of Hoxc6 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr9_-_21760275 0.20 ENSMUST00000098942.4
SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)
chr10_+_62449489 0.20 ENSMUST00000181110.1
RIKEN cDNA 4930507D05 gene
chr10_-_128626464 0.17 ENSMUST00000026420.5
ribosomal protein S26
chr5_+_24413406 0.17 ENSMUST00000049346.5
acid-sensing (proton-gated) ion channel 3
chr4_-_132351636 0.14 ENSMUST00000105951.1
regulator of chromosome condensation 1
chrX_-_94212638 0.14 ENSMUST00000113922.1
eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked
chr14_+_75242287 0.13 ENSMUST00000022576.8
carboxypeptidase B2 (plasma)
chr13_+_93304799 0.13 ENSMUST00000080127.5
homer homolog 1 (Drosophila)
chr5_-_110046486 0.13 ENSMUST00000167969.1
predicted gene, 17655
chr2_-_51149100 0.11 ENSMUST00000154545.1
ENSMUST00000017288.2
Rho family GTPase 3
chr1_-_189922338 0.09 ENSMUST00000027897.7
SET and MYND domain containing 2
chrX_-_136741155 0.09 ENSMUST00000166930.1
ENSMUST00000113095.1
ENSMUST00000155207.1
ENSMUST00000080411.6
ENSMUST00000169418.1
mortality factor 4 like 2
chr2_+_65620829 0.09 ENSMUST00000028377.7
sodium channel, voltage-gated, type II, alpha 1
chr10_-_70655934 0.08 ENSMUST00000162144.1
ENSMUST00000162793.1
phytanoyl-CoA hydroxylase interacting protein-like
chr10_-_62449738 0.08 ENSMUST00000020273.9
suppressor of var1, 3-like 1 (S. cerevisiae)
chr9_+_107551516 0.08 ENSMUST00000093786.2
ENSMUST00000122225.1
Ras association (RalGDS/AF-6) domain family member 1
chr13_+_93304066 0.07 ENSMUST00000109493.1
homer homolog 1 (Drosophila)
chr8_-_54724317 0.07 ENSMUST00000129132.2
ENSMUST00000150488.1
ENSMUST00000127511.2
WD repeat domain 17
chr18_+_56572822 0.07 ENSMUST00000008445.5
phosphorylated adaptor for RNA export
chrX_-_94212685 0.07 ENSMUST00000050328.8
eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked
chr15_-_50889043 0.06 ENSMUST00000183997.1
ENSMUST00000183757.1
trichorhinophalangeal syndrome I (human)
chr1_+_171225054 0.06 ENSMUST00000111321.1
ENSMUST00000005824.5
ENSMUST00000111320.1
ENSMUST00000111319.1
apolipoprotein A-II
chr9_-_27155418 0.06 ENSMUST00000167074.1
ENSMUST00000034472.8
junction adhesion molecule 3
chr15_+_44619551 0.06 ENSMUST00000022964.7
estrogen receptor-binding fragment-associated gene 9
chr3_+_66985700 0.06 ENSMUST00000046542.6
ENSMUST00000162693.1
arginine/serine-rich coiled-coil 1
chrM_+_9452 0.06 ENSMUST00000082411.1
mitochondrially encoded NADH dehydrogenase 3
chr3_+_66985680 0.05 ENSMUST00000065047.6
arginine/serine-rich coiled-coil 1
chr3_-_30509462 0.05 ENSMUST00000173899.1
MDS1 and EVI1 complex locus
chr19_+_11518493 0.05 ENSMUST00000025580.3
membrane-spanning 4-domains, subfamily A, member 6B
chr11_-_23895208 0.05 ENSMUST00000102863.2
ENSMUST00000020513.3
poly(A) polymerase gamma
chr17_-_78985428 0.05 ENSMUST00000118991.1
protein kinase D3
chr4_+_132351768 0.05 ENSMUST00000172202.1
predicted gene, 17300
chr6_-_3494587 0.05 ENSMUST00000049985.8
HEPACAM family member 2
chr11_-_109472611 0.04 ENSMUST00000168740.1
solute carrier family 16 (monocarboxylic acid transporters), member 6
chrM_+_14138 0.04 ENSMUST00000082421.1
mitochondrially encoded cytochrome b
chr10_-_37138863 0.04 ENSMUST00000092584.5
myristoylated alanine rich protein kinase C substrate
chr1_-_191907527 0.04 ENSMUST00000069573.5
RIKEN cDNA 1700034H15 gene
chr10_-_100589205 0.04 ENSMUST00000054471.8
RIKEN cDNA 4930430F08 gene
chrM_+_8600 0.03 ENSMUST00000082409.1
mitochondrially encoded cytochrome c oxidase III
chrM_-_14060 0.03 ENSMUST00000082419.1
mitochondrially encoded NADH dehydrogenase 6
chr4_+_99656299 0.03 ENSMUST00000087285.3
forkhead box D3
chrX_+_49463926 0.03 ENSMUST00000130558.1
Rho GTPase activating protein 36
chr3_+_66985647 0.03 ENSMUST00000162362.1
ENSMUST00000065074.7
arginine/serine-rich coiled-coil 1
chr7_-_109731708 0.03 ENSMUST00000035372.1
achaete-scute complex homolog 3 (Drosophila)
chr3_-_92485886 0.03 ENSMUST00000054599.7
small proline-rich protein 1A
chr1_-_138175238 0.03 ENSMUST00000182536.1
protein tyrosine phosphatase, receptor type, C
chr7_-_16285454 0.03 ENSMUST00000174270.1
coiled-coil domain containing 9
chr16_-_21995478 0.02 ENSMUST00000074230.4
ENSMUST00000060673.6
lipase, member H
chr7_-_115846080 0.02 ENSMUST00000166207.1
SRY-box containing gene 6
chr10_-_61784014 0.02 ENSMUST00000020283.4
H2A histone family, member Y2
chr3_+_136670076 0.02 ENSMUST00000070198.7
protein phosphatase 3, catalytic subunit, alpha isoform
chr5_-_128953303 0.02 ENSMUST00000111346.1
RIMS binding protein 2
chr15_+_91673175 0.02 ENSMUST00000060642.6
leucine-rich repeat kinase 2
chr1_-_138175126 0.02 ENSMUST00000183301.1
protein tyrosine phosphatase, receptor type, C
chr7_-_19604444 0.02 ENSMUST00000086041.5
CLK4-associating serine/arginine rich protein
chr4_+_33062999 0.02 ENSMUST00000108162.1
ENSMUST00000024035.2
gamma-aminobutyric acid (GABA) C receptor, subunit rho 2
chr1_-_138175283 0.02 ENSMUST00000182755.1
ENSMUST00000183262.1
ENSMUST00000027645.7
ENSMUST00000112036.2
ENSMUST00000182283.1
protein tyrosine phosphatase, receptor type, C
chr19_+_6364557 0.02 ENSMUST00000155973.1
splicing factor 1
chr1_-_22315792 0.02 ENSMUST00000164877.1
regulating synaptic membrane exocytosis 1
chr13_-_64903888 0.02 ENSMUST00000091554.4
contactin associated protein-like 3
chr15_-_50889691 0.01 ENSMUST00000165201.2
ENSMUST00000184458.1
trichorhinophalangeal syndrome I (human)
chr17_+_12876034 0.01 ENSMUST00000075296.2
MAS-related GPR, member H
chr16_-_56712825 0.01 ENSMUST00000136394.1
Trk-fused gene
chr8_-_54724474 0.01 ENSMUST00000175915.1
WD repeat domain 17
chr19_-_11660516 0.01 ENSMUST00000135994.1
ENSMUST00000121793.1
ENSMUST00000069681.3
placenta-specific 1-like
chr3_+_146150174 0.01 ENSMUST00000098524.4
mucolipin 2
chr3_+_129213920 0.01 ENSMUST00000042587.10
paired-like homeodomain transcription factor 2
chr8_-_84249701 0.01 ENSMUST00000019506.7
DNA segment, Chr 8, ERATO Doi 738, expressed
chr1_-_43827751 0.00 ENSMUST00000128261.1
ENSMUST00000126008.1
ENSMUST00000139451.1
UDP-glucuronate decarboxylase 1
chr18_+_53551594 0.00 ENSMUST00000115398.1
PR domain containing 6

Network of associatons between targets according to the STRING database.

First level regulatory network of Hoxc6

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0003330 regulation of extracellular matrix constituent secretion(GO:0003330) positive regulation of extracellular matrix constituent secretion(GO:0003331)
0.0 0.2 GO:0050915 sensory perception of sour taste(GO:0050915)
0.0 0.1 GO:0051030 snRNA transport(GO:0051030)
0.0 0.1 GO:0000965 mitochondrial RNA catabolic process(GO:0000957) regulation of mitochondrial RNA catabolic process(GO:0000960) mitochondrial RNA 3'-end processing(GO:0000965)
0.0 0.1 GO:0046340 diacylglycerol catabolic process(GO:0046340)
0.0 0.2 GO:2001256 regulation of store-operated calcium entry(GO:2001256)
0.0 0.1 GO:2000471 immunoglobulin biosynthetic process(GO:0002378) regulation of hematopoietic stem cell migration(GO:2000471) positive regulation of hematopoietic stem cell migration(GO:2000473)
0.0 0.1 GO:0018026 peptidyl-lysine monomethylation(GO:0018026)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:0031262 Ndc80 complex(GO:0031262)
0.0 0.2 GO:0005850 eukaryotic translation initiation factor 2 complex(GO:0005850)
0.0 0.0 GO:0042585 germinal vesicle(GO:0042585)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0005087 Ran guanyl-nucleotide exchange factor activity(GO:0005087)
0.0 0.2 GO:0031802 type 5 metabotropic glutamate receptor binding(GO:0031802)
0.0 0.2 GO:0015280 ligand-gated sodium channel activity(GO:0015280)
0.0 0.1 GO:0070653 high-density lipoprotein particle receptor binding(GO:0070653)
0.0 0.1 GO:0046975 histone methyltransferase activity (H3-K36 specific)(GO:0046975)