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2D miR_HR1_12

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Results for ACUGCAU

Z-value: 0.49

Motif logo

miRNA associated with seed ACUGCAU

NamemiRBASE accession
MIMAT0000679

Activity profile of ACUGCAU motif

Sorted Z-values of ACUGCAU motif

Promoter Log-likelihood Transcript Gene Gene Info
chr10_+_4611971 1.24 ENSMUST00000105590.1
ENSMUST00000067086.7
estrogen receptor 1 (alpha)
chr8_-_4779513 0.84 ENSMUST00000022945.7
Shc SH2-domain binding protein 1
chr9_-_22389113 0.53 ENSMUST00000040912.7
anillin, actin binding protein
chr6_+_103510874 0.31 ENSMUST00000066905.6
cell adhesion molecule with homology to L1CAM
chr18_+_40258361 0.31 ENSMUST00000091927.4
potassium channel tetramerisation domain containing 16
chr5_+_110286306 0.30 ENSMUST00000007296.5
ENSMUST00000112482.1
polymerase (DNA directed), epsilon
chr1_+_34801704 0.28 ENSMUST00000047664.9
Rho guanine nucleotide exchange factor (GEF) 4
chr4_-_91372028 0.28 ENSMUST00000107110.1
ENSMUST00000008633.8
ENSMUST00000107118.1
ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
chr3_+_108537523 0.28 ENSMUST00000029485.5
RIKEN cDNA 1700013F07 gene
chr19_+_18670780 0.26 ENSMUST00000025632.9
RIKEN cDNA 2410127L17 gene
chr12_+_40446050 0.24 ENSMUST00000037488.6
dedicator of cytokinesis 4
chr6_-_131388417 0.21 ENSMUST00000032309.6
ENSMUST00000087865.2
Y box protein 3
chr6_-_47594967 0.21 ENSMUST00000081721.6
ENSMUST00000114618.1
ENSMUST00000114616.1
enhancer of zeste homolog 2 (Drosophila)
chr16_+_7069825 0.19 ENSMUST00000056416.7
RNA binding protein, fox-1 homolog (C. elegans) 1
chr16_+_14361552 0.19 ENSMUST00000100167.3
ENSMUST00000154748.1
ENSMUST00000134776.1
ATP-binding cassette, sub-family C (CFTR/MRP), member 1
chr2_+_65620829 0.19 ENSMUST00000028377.7
sodium channel, voltage-gated, type II, alpha 1
chr5_-_24030649 0.19 ENSMUST00000030849.6
family with sequence similarity 126, member A
chr1_+_187997821 0.19 ENSMUST00000027906.6
estrogen-related receptor gamma
chr16_-_32003122 0.19 ENSMUST00000023457.5
SUMO/sentrin specific peptidase 5
chr14_-_46822232 0.19 ENSMUST00000111817.1
ENSMUST00000079314.5
glia maturation factor, beta
chr15_-_73184840 0.18 ENSMUST00000044113.10
argonaute RISC catalytic subunit 2
chr6_-_99666762 0.17 ENSMUST00000032151.2
eukaryotic translation initiation factor 4E member 3
chr5_+_146384947 0.17 ENSMUST00000110600.1
ENSMUST00000016143.7
WAS protein family, member 3
chr5_-_100500592 0.16 ENSMUST00000149714.1
ENSMUST00000046154.5
lin-54 homolog (C. elegans)
chr1_-_119837613 0.15 ENSMUST00000064091.5
protein tyrosine phosphatase, non-receptor type 4
chr14_-_98169542 0.15 ENSMUST00000069334.7
ENSMUST00000071533.6
dachshund 1 (Drosophila)
chr15_-_96699698 0.14 ENSMUST00000023099.6
solute carrier family 38, member 2
chr3_+_63976106 0.14 ENSMUST00000029405.7
guanine monophosphate synthetase
chr13_-_47106176 0.14 ENSMUST00000021807.6
ENSMUST00000135278.1
DEK oncogene (DNA binding)
chr6_+_34709442 0.14 ENSMUST00000115021.1
caldesmon 1
chr10_-_123196916 0.14 ENSMUST00000020334.7
ubiquitin specific peptidase 15
chr1_+_59482133 0.13 ENSMUST00000114246.2
ENSMUST00000037105.6
frizzled homolog 7 (Drosophila)
chr16_+_16896469 0.13 ENSMUST00000027373.9
protein phosphatase 1F (PP2C domain containing)
chr15_-_64312636 0.12 ENSMUST00000177083.1
ENSMUST00000177371.1
ArfGAP with SH3 domain, ankyrin repeat and PH domain1
chr8_-_81014866 0.12 ENSMUST00000042724.6
ubiquitin specific peptidase 38
chr2_+_12924041 0.11 ENSMUST00000134794.1
ENSMUST00000028063.4
ENSMUST00000154269.1
ENSMUST00000114796.3
phosphotriesterase related
chr14_-_100149764 0.11 ENSMUST00000097079.4
Kruppel-like factor 12
chr1_+_37997975 0.10 ENSMUST00000027252.7
eukaryotic translation initiation factor 5B
chr7_-_98309471 0.10 ENSMUST00000033020.7
alkaline ceramidase 3
chr5_+_13399309 0.10 ENSMUST00000030714.7
ENSMUST00000141968.1
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
chr7_+_90130227 0.10 ENSMUST00000049537.7
phosphatidylinositol binding clathrin assembly protein
chr6_-_24956106 0.10 ENSMUST00000127247.2
transmembrane protein 229A
chr2_+_122028544 0.10 ENSMUST00000028668.7
eukaryotic translation initiation factor 3, subunit J1
chr4_-_88438900 0.10 ENSMUST00000132493.1
ENSMUST00000030221.2
ENSMUST00000151280.1
protein tyrosine phosphatase-like A domain containing 2
chr9_-_72111827 0.09 ENSMUST00000183404.1
ENSMUST00000184783.1
transcription factor 12
chr3_-_26133734 0.09 ENSMUST00000108308.3
ENSMUST00000075054.4
neuroligin 1
chr4_+_55350043 0.09 ENSMUST00000030134.8
RAD23b homolog (S. cerevisiae)
chrX_-_51018011 0.08 ENSMUST00000053593.7
RAP2C, member of RAS oncogene family
chr14_+_101729907 0.08 ENSMUST00000100337.3
LIM domain only 7
chr5_-_113908685 0.08 ENSMUST00000004646.6
coronin, actin binding protein 1C
chr2_+_119675062 0.08 ENSMUST00000028767.8
Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
chr11_-_6475992 0.07 ENSMUST00000179343.1
purine rich element binding protein B
chr4_-_133753611 0.07 ENSMUST00000145664.2
ENSMUST00000105897.3
AT rich interactive domain 1A (SWI-like)
chr2_+_102658640 0.07 ENSMUST00000080210.3
solute carrier family 1 (glial high affinity glutamate transporter), member 2
chr7_+_120677579 0.07 ENSMUST00000060175.6
cDNA sequence BC030336
chr1_-_160792908 0.06 ENSMUST00000028049.7
RAB GTPase activating protein 1-like
chr5_+_108065742 0.06 ENSMUST00000081567.4
ENSMUST00000170319.1
ENSMUST00000112626.1
metal response element binding transcription factor 2
chr4_-_132843111 0.06 ENSMUST00000105919.1
ENSMUST00000030702.7
protein phosphatase 1, regulatory (inhibitor) subunit 8
chr13_+_118714678 0.06 ENSMUST00000022246.8
fibroblast growth factor 10
chr18_-_34954302 0.06 ENSMUST00000025217.8
heat shock protein 9
chr16_-_84735742 0.06 ENSMUST00000116584.1
mitochondrial ribosomal protein L39
chr9_-_107231816 0.06 ENSMUST00000044532.4
dedicator of cyto-kinesis 3
chr7_+_66109474 0.06 ENSMUST00000036372.6
chondroitin sulfate synthase 1
chr11_+_80209019 0.06 ENSMUST00000077451.7
ENSMUST00000055056.9
ras homolog gene family, member T1
chr15_-_36794498 0.06 ENSMUST00000110361.1
ENSMUST00000022894.7
ENSMUST00000110359.1
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
chr3_-_139075178 0.06 ENSMUST00000098574.2
ENSMUST00000029796.6
RAP1, GTP-GDP dissociation stimulator 1
chr1_-_128417352 0.06 ENSMUST00000027602.8
ENSMUST00000064309.7
aspartyl-tRNA synthetase
chr9_-_32541589 0.06 ENSMUST00000016231.7
Friend leukemia integration 1
chr10_+_110920170 0.05 ENSMUST00000020403.5
cysteine and glycine-rich protein 2
chr1_+_172376528 0.05 ENSMUST00000052455.2
phosphatidylinositol glycan anchor biosynthesis, class M
chr15_-_50889691 0.05 ENSMUST00000165201.2
ENSMUST00000184458.1
trichorhinophalangeal syndrome I (human)
chr11_-_85235065 0.05 ENSMUST00000018625.9
amyloid beta precursor protein (cytoplasmic tail) binding protein 2
chr14_-_79771305 0.05 ENSMUST00000039568.5
protocadherin 8
chr2_+_121955964 0.04 ENSMUST00000036647.6
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
chr5_+_86804214 0.04 ENSMUST00000119339.1
ENSMUST00000120498.1
YTH domain containing 1
chr9_-_71592265 0.04 ENSMUST00000166843.1
ENSMUST00000163998.1
ENSMUST00000169573.1
GRINL1A complex locus
myocardial zonula adherens protein
chr3_+_54693088 0.04 ENSMUST00000170552.1
suppressor of Ty 20
chr1_+_42697146 0.04 ENSMUST00000054883.2
POU domain, class 3, transcription factor 3
chr14_+_84443553 0.04 ENSMUST00000071370.5
protocadherin 17
chr13_-_98891036 0.04 ENSMUST00000109399.2
transportin 1
chr16_+_42907563 0.04 ENSMUST00000151244.1
ENSMUST00000114694.2
zinc finger and BTB domain containing 20
chr1_-_190170671 0.03 ENSMUST00000175916.1
prospero-related homeobox 1
chrX_-_136743675 0.03 ENSMUST00000166478.1
ENSMUST00000113097.1
mortality factor 4 like 2
chr9_-_71485893 0.03 ENSMUST00000034720.5
polymerase (RNA) II (DNA directed) polypeptide M
chr15_+_96287518 0.03 ENSMUST00000134985.2
ENSMUST00000096250.4
AT rich interactive domain 2 (ARID, RFX-like)
chr5_+_88886809 0.03 ENSMUST00000148750.1
solute carrier family 4 (anion exchanger), member 4
chr7_-_89338709 0.03 ENSMUST00000137723.1
ENSMUST00000117852.1
ENSMUST00000041968.3
transmembrane protein 135
chr1_+_61638819 0.03 ENSMUST00000138768.1
ENSMUST00000075374.3
par-3 partitioning defective 3 homolog B (C. elegans)
chr17_+_3326552 0.03 ENSMUST00000169838.1
T cell lymphoma invasion and metastasis 2
chr13_+_55693082 0.03 ENSMUST00000057844.8
RIKEN cDNA B230219D22 gene
chr5_-_135934590 0.03 ENSMUST00000055808.5
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
chr12_+_49382791 0.03 ENSMUST00000179669.1
forkhead box G1
chr3_-_108911687 0.02 ENSMUST00000029480.8
PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
chr12_-_27342696 0.02 ENSMUST00000079063.5
SRY-box containing gene 11
chr16_+_56075399 0.02 ENSMUST00000089362.2
ENSMUST00000089360.3
ENSMUST00000049128.6
SUMO1/sentrin specific peptidase 7
chr8_-_116732991 0.02 ENSMUST00000109102.2
chromodomain protein, Y chromosome-like 2
chr7_-_105744312 0.02 ENSMUST00000141116.1
TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor
chr4_-_3574844 0.02 ENSMUST00000029891.5
transmembrane protein 68
chr15_-_8444449 0.01 ENSMUST00000052965.6
Nipped-B homolog (Drosophila)
chr6_-_35539765 0.01 ENSMUST00000031866.5
myotrophin
chr4_+_57637816 0.01 ENSMUST00000150412.1
predicted gene 20459
chr19_-_21472552 0.01 ENSMUST00000087600.3
guanine deaminase
chr4_+_66827545 0.01 ENSMUST00000048096.5
ENSMUST00000107365.2
toll-like receptor 4
chr17_-_10319324 0.01 ENSMUST00000097414.3
ENSMUST00000042296.7
quaking
chr18_+_60925612 0.01 ENSMUST00000102888.3
ENSMUST00000025519.4
calcium/calmodulin-dependent protein kinase II alpha
chr5_+_32458974 0.01 ENSMUST00000015100.8
protein phosphatase 1, catalytic subunit, beta isoform
chr9_+_119894876 0.01 ENSMUST00000036561.6
WD repeat domain 48
chrX_-_41911877 0.01 ENSMUST00000047037.8
THO complex 2
chr11_-_82890541 0.00 ENSMUST00000092844.6
ENSMUST00000021033.9
ENSMUST00000018985.8
RAD51 homolog D
chr2_-_120609283 0.00 ENSMUST00000102496.1
leucine rich repeat containing 57
chr4_+_40722912 0.00 ENSMUST00000164233.1
ENSMUST00000137246.1
ENSMUST00000125442.1
DnaJ (Hsp40) homolog, subfamily A, member 1
chr6_-_23839420 0.00 ENSMUST00000115358.2
ENSMUST00000163871.2
Ca2+-dependent activator protein for secretion 2
chrX_+_166238901 0.00 ENSMUST00000112235.1
glycoprotein m6b
chr17_-_44736648 0.00 ENSMUST00000113572.2
runt related transcription factor 2
chr3_-_69127098 0.00 ENSMUST00000029353.2
karyopherin (importin) alpha 4
chr15_-_93336800 0.00 ENSMUST00000080299.6
YY1 associated factor 2

Network of associatons between targets according to the STRING database.

First level regulatory network of ACUGCAU

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.2 GO:0060011 Sertoli cell proliferation(GO:0060011) prostate epithelial cord elongation(GO:0060523)
0.2 0.5 GO:1904170 regulation of bleb assembly(GO:1904170)
0.1 0.3 GO:0045004 DNA replication proofreading(GO:0045004)
0.1 0.2 GO:0071707 immunoglobulin heavy chain V-D-J recombination(GO:0071707)
0.1 0.2 GO:0034635 glutathione transport(GO:0034635) oligopeptide transmembrane transport(GO:0035672) tripeptide transport(GO:0042939)
0.1 0.2 GO:1904694 negative regulation of vascular smooth muscle contraction(GO:1904694)
0.1 0.1 GO:0060615 fibroblast growth factor receptor signaling pathway involved in mammary gland specification(GO:0060595) mammary gland bud formation(GO:0060615) branch elongation involved in salivary gland morphogenesis(GO:0060667) mesenchymal cell differentiation involved in lung development(GO:0060915)
0.1 0.2 GO:1902219 negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress(GO:1902219)
0.0 0.2 GO:0035279 mRNA cleavage involved in gene silencing by miRNA(GO:0035279) mRNA cleavage involved in gene silencing(GO:0098795)
0.0 0.1 GO:0001712 ectodermal cell fate commitment(GO:0001712) regulation of ectoderm development(GO:2000383) negative regulation of ectoderm development(GO:2000384)
0.0 0.1 GO:0098923 positive regulation of circadian sleep/wake cycle, wakefulness(GO:0010841) retrograde trans-synaptic signaling by soluble gas(GO:0098923)
0.0 0.1 GO:0060244 negative regulation of cell proliferation involved in contact inhibition(GO:0060244)
0.0 0.1 GO:0000715 nucleotide-excision repair, DNA damage recognition(GO:0000715)
0.0 0.1 GO:0006177 GMP biosynthetic process(GO:0006177)
0.0 0.1 GO:0035616 histone H2B conserved C-terminal lysine deubiquitination(GO:0035616)
0.0 0.1 GO:0021856 cerebral cortex tangential migration using cell-axon interactions(GO:0021824) gonadotrophin-releasing hormone neuronal migration to the hypothalamus(GO:0021828) hypothalamic tangential migration using cell-axon interactions(GO:0021856) facioacoustic ganglion development(GO:1903375)
0.0 0.1 GO:1903527 positive regulation of membrane tubulation(GO:1903527)
0.0 0.2 GO:0034316 negative regulation of Arp2/3 complex-mediated actin nucleation(GO:0034316)
0.0 0.1 GO:2001032 cell quiescence(GO:0044838) regulation of double-strand break repair via nonhomologous end joining(GO:2001032)
0.0 0.1 GO:1904684 positive regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process(GO:1902961) negative regulation of metalloendopeptidase activity(GO:1904684) positive regulation of aspartic-type peptidase activity(GO:1905247)
0.0 0.2 GO:0044387 negative regulation of protein kinase activity by regulation of protein phosphorylation(GO:0044387)
0.0 0.1 GO:0015838 amino-acid betaine transport(GO:0015838)
0.0 0.1 GO:1902037 negative regulation of hematopoietic stem cell differentiation(GO:1902037)
0.0 0.2 GO:0016926 protein desumoylation(GO:0016926)
0.0 0.1 GO:0061086 negative regulation of histone H3-K27 methylation(GO:0061086)
0.0 0.1 GO:0070777 D-aspartate transport(GO:0070777) D-aspartate import(GO:0070779)
0.0 0.0 GO:0061114 hepatocyte cell migration(GO:0002194) branching involved in pancreas morphogenesis(GO:0061114) acinar cell differentiation(GO:0090425) positive regulation of forebrain neuron differentiation(GO:2000979)
0.0 0.1 GO:0090168 Golgi reassembly(GO:0090168)
0.0 0.1 GO:0006344 maintenance of chromatin silencing(GO:0006344)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.2 GO:0097550 transcriptional preinitiation complex(GO:0097550)
0.1 0.5 GO:0005826 actomyosin contractile ring(GO:0005826)
0.1 0.3 GO:0008622 epsilon DNA polymerase complex(GO:0008622)
0.0 0.1 GO:0070381 endosome to plasma membrane transport vesicle(GO:0070381)
0.0 0.1 GO:0071942 XPC complex(GO:0071942)
0.0 0.2 GO:0070578 RISC-loading complex(GO:0070578)
0.0 0.1 GO:0030478 actin cap(GO:0030478)
0.0 0.3 GO:0035098 ESC/E(Z) complex(GO:0035098)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.2 GO:0031798 type 1 metabotropic glutamate receptor binding(GO:0031798)
0.1 0.2 GO:0035673 oligopeptide transmembrane transporter activity(GO:0035673)
0.1 0.2 GO:0070137 ubiquitin-like protein-specific endopeptidase activity(GO:0070137) SUMO-specific endopeptidase activity(GO:0070139)
0.0 0.3 GO:0008310 single-stranded DNA 3'-5' exodeoxyribonuclease activity(GO:0008310)
0.0 0.2 GO:0046976 histone methyltransferase activity (H3-K27 specific)(GO:0046976)
0.0 0.1 GO:0061649 ubiquitinated histone binding(GO:0061649)
0.0 0.1 GO:0033192 calmodulin-dependent protein phosphatase activity(GO:0033192)
0.0 0.1 GO:0004726 non-membrane spanning protein tyrosine phosphatase activity(GO:0004726)
0.0 0.1 GO:0017040 ceramidase activity(GO:0017040)
0.0 0.1 GO:0050510 N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity(GO:0050510)
0.0 0.1 GO:1990269 RNA polymerase II C-terminal domain phosphoserine binding(GO:1990269)
0.0 0.1 GO:0032422 purine-rich negative regulatory element binding(GO:0032422)
0.0 0.1 GO:0001075 transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly(GO:0001075)
0.0 0.2 GO:0000340 RNA 7-methylguanosine cap binding(GO:0000340)
0.0 0.8 GO:0042169 SH2 domain binding(GO:0042169)
0.0 0.2 GO:0071933 Arp2/3 complex binding(GO:0071933)
0.0 0.1 GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor(GO:0016884)
0.0 0.1 GO:0005111 type 2 fibroblast growth factor receptor binding(GO:0005111)
0.0 0.1 GO:0015501 glutamate:sodium symporter activity(GO:0015501)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.2 PID FOXM1 PATHWAY FOXM1 transcription factor network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.2 REACTOME NUCLEAR SIGNALING BY ERBB4 Genes involved in Nuclear signaling by ERBB4
0.0 0.3 REACTOME REPAIR SYNTHESIS FOR GAP FILLING BY DNA POL IN TC NER Genes involved in Repair synthesis for gap-filling by DNA polymerase in TC-NER
0.0 0.1 REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS Genes involved in Purine ribonucleoside monophosphate biosynthesis