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2D miR_HR1_12

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Results for Sox13

Z-value: 0.22

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Transcription factors associated with Sox13

Gene Symbol Gene ID Gene Info
ENSMUSG00000070643.5 SRY (sex determining region Y)-box 13

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Sox13mm10_v2_chr1_-_133424377_1334244040.575.3e-02Click!

Activity profile of Sox13 motif

Sorted Z-values of Sox13 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr12_+_24708984 0.30 ENSMUST00000154588.1
ribonucleotide reductase M2
chr7_+_96210107 0.23 ENSMUST00000138760.1
teneurin transmembrane protein 4
chr6_+_122513583 0.23 ENSMUST00000032210.7
ENSMUST00000148517.1
microfibrillar associated protein 5
chr8_-_84773381 0.22 ENSMUST00000109764.1
nuclear factor I/X
chr2_-_119662756 0.13 ENSMUST00000028768.1
ENSMUST00000110801.1
ENSMUST00000110802.1
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1
chr11_-_99438143 0.11 ENSMUST00000017743.2
keratin 20
chr11_-_77489666 0.11 ENSMUST00000037593.7
ENSMUST00000092892.3
ankyrin repeat domain 13b
chr4_+_48585135 0.10 ENSMUST00000030032.6
transmembrane protein with EGF-like and two follistatin-like domains 1
chr18_+_69593361 0.10 ENSMUST00000114978.2
ENSMUST00000114977.1
transcription factor 4
chr3_+_87906321 0.08 ENSMUST00000005017.8
hepatoma-derived growth factor
chr5_-_49285653 0.06 ENSMUST00000175660.1
Kv channel interacting protein 4
chr4_+_48585276 0.06 ENSMUST00000123476.1
transmembrane protein with EGF-like and two follistatin-like domains 1
chr6_+_122513643 0.06 ENSMUST00000118626.1
microfibrillar associated protein 5
chr19_-_7241216 0.06 ENSMUST00000025675.9
N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)
chr15_-_50890396 0.06 ENSMUST00000185183.1
trichorhinophalangeal syndrome I (human)
chr9_-_75597643 0.06 ENSMUST00000164100.1
tropomodulin 2
chr3_-_141982224 0.05 ENSMUST00000029948.8
bone morphogenetic protein receptor, type 1B
chr4_-_115781012 0.05 ENSMUST00000106521.1
testis expressed 38
chr2_+_176236860 0.05 ENSMUST00000166464.1
RIKEN cDNA 2210418O10 gene
chr1_+_39900883 0.05 ENSMUST00000163854.2
ENSMUST00000168431.1
mitogen-activated protein kinase kinase kinase kinase 4
chr7_+_82867327 0.04 ENSMUST00000082237.5
mex3 homolog B (C. elegans)
chr17_-_68004075 0.04 ENSMUST00000024840.5
Rho GTPase activating protein 28
chr15_-_91049823 0.04 ENSMUST00000088614.5
ENSMUST00000100304.4
ENSMUST00000067205.8
ENSMUST00000109288.2
ENSMUST00000109287.2
kinesin family member 21A
chr7_-_105787567 0.03 ENSMUST00000144189.1
dachsous 1 (Drosophila)
chr10_+_53596936 0.03 ENSMUST00000020004.6
ASF1 anti-silencing function 1 homolog A (S. cerevisiae)
chr5_-_24577467 0.02 ENSMUST00000030795.8
ATP-binding cassette, sub-family F (GCN20), member 2
chr2_-_36104060 0.02 ENSMUST00000112961.3
ENSMUST00000112966.3
LIM homeobox protein 6
chr2_+_25180737 0.02 ENSMUST00000104999.2
Notch-regulated ankyrin repeat protein
chr3_-_96058446 0.02 ENSMUST00000015891.5
vacuolar protein sorting 45 (yeast)
chr19_-_19001099 0.02 ENSMUST00000040153.8
ENSMUST00000112828.1
RAR-related orphan receptor beta
chr4_+_103143052 0.01 ENSMUST00000106855.1
mesoderm induction early response 1 homolog (Xenopus laevis
chr14_-_121698417 0.01 ENSMUST00000040700.7
dedicator of cytokinesis 9
chr1_+_160906372 0.01 ENSMUST00000161609.1
RING CCCH (C3H) domains 1
chr10_-_116473418 0.01 ENSMUST00000087965.4
ENSMUST00000164271.1
potassium large conductance calcium-activated channel, subfamily M, beta member 4
chr18_+_37355271 0.01 ENSMUST00000051163.1
protocadherin beta 8
chr15_+_99702278 0.00 ENSMUST00000023759.4
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1

Network of associatons between targets according to the STRING database.

First level regulatory network of Sox13

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0060912 cardiac cell fate specification(GO:0060912)
0.0 0.3 GO:0009263 deoxyribonucleotide biosynthetic process(GO:0009263)
0.0 0.2 GO:0021684 cerebellar granular layer formation(GO:0021684) cerebellar granule cell differentiation(GO:0021707)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0005971 ribonucleoside-diphosphate reductase complex(GO:0005971)
0.0 0.3 GO:0043205 microfibril(GO:0001527) fibril(GO:0043205)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0030023 extracellular matrix constituent conferring elasticity(GO:0030023)
0.1 0.3 GO:0016728 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731)
0.0 0.1 GO:0001087 transcription factor activity, sequence-specific DNA binding, RNA polymerase recruiting(GO:0001011) transcription factor activity, TFIIB-class binding(GO:0001087)
0.0 0.1 GO:1990189 peptide-serine-N-acetyltransferase activity(GO:1990189)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 REACTOME G1 S SPECIFIC TRANSCRIPTION Genes involved in G1/S-Specific Transcription