mm10_v2_chr13_-_63565520_63565520	0.709599	AACACUG	ENSMUST00000021921.5|Ptch1|ENSMUSG00000021466.6|patched homolog 1
mm10_v2_chr18_-_47368830_47368878	0.530309	AACACUG	ENSMUST00000019791.7|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 	ENSMUST00000115449.2|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm10_v2_chr1_-_9700209_9700329	0.527726	AACACUG	ENSMUST00000088658.4|Mybl1|ENSMUSG00000025912.10|myeloblastosis oncogene-like 1
mm10_v2_chr9_+_95559817_95559960	0.501623	AACACUG	ENSMUST00000079597.5|Paqr9|ENSMUSG00000064225.5|progestin and adipoQ receptor family member IX
mm10_v2_chr18_+_10325148_10325222	0.484198	AACACUG	ENSMUST00000048977.8|Greb1l|ENSMUSG00000042942.9|growth regulation by estrogen in breast cancer-like
mm10_v2_chr1_+_158362261_158362304	0.420085	AACACUG	ENSMUST00000046110.9|Astn1|ENSMUSG00000026587.9|astrotactin 1
mm10_v2_chr12_-_108275409_108275417	0.392828	AACACUG	ENSMUST00000136175.1|Ccdc85c|ENSMUSG00000084883.1|coiled-coil domain containing 85C
mm10_v2_chr7_+_141475240_141475256	0.378269	AACACUG	ENSMUST00000026585.7|Tspan4|ENSMUSG00000025511.8|tetraspanin 4
mm10_v2_chr14_-_100149764_100149764	0.37412	AACACUG	ENSMUST00000097079.4|Klf12|ENSMUSG00000072294.4|Kruppel-like factor 12
mm10_v2_chr15_+_93398344_93398464	0.369809	AACACUG	ENSMUST00000109256.3|Pphln1|ENSMUSG00000036167.9|periphilin 1 	ENSMUST00000068457.7|Pphln1|ENSMUSG00000036167.9|periphilin 1 	ENSMUST00000049122.8|Pphln1|ENSMUSG00000036167.9|periphilin 1 	ENSMUST00000165935.1|Pphln1|ENSMUSG00000036167.9|periphilin 1
mm10_v2_chr4_+_11156411_11156453	0.346409	AACACUG	ENSMUST00000029865.3|Trp53inp1|ENSMUSG00000028211.5|transformation related protein 53 inducible nuclear protein 1
mm10_v2_chr11_+_68691906_68691915	0.34219	AACACUG	ENSMUST00000102611.3|Myh10|ENSMUSG00000020900.9|myosin, heavy polypeptide 10, non-muscle
mm10_v2_chr1_+_187997821_187997834	0.339802	AACACUG	ENSMUST00000027906.6|Esrrg|ENSMUSG00000026610.7|estrogen-related receptor gamma
mm10_v2_chr3_+_95929246_95929298	0.29921	AACACUG	ENSMUST00000165307.1|Anp32e|ENSMUSG00000015749.6|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E 	ENSMUST00000015893.6|Anp32e|ENSMUSG00000015749.6|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
mm10_v2_chr15_+_4375462_4375511	0.290141	AACACUG	ENSMUST00000061925.4|Plcxd3|ENSMUSG00000049148.8|phosphatidylinositol-specific phospholipase C, X domain containing 3
mm10_v2_chr9_-_16378231_16378231	0.283838	AACACUG	ENSMUST00000082170.5|Fat3|ENSMUSG00000074505.4|FAT tumor suppressor homolog 3 (Drosophila)
mm10_v2_chr6_+_124712279_124712353	0.272907	AACACUG	ENSMUST00000004375.9|Phb2|ENSMUSG00000004264.11|prohibitin 2
mm10_v2_chr4_-_91372028_91372069	0.271073	AACACUG	ENSMUST00000107110.1|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000008633.8|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000107118.1|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chr11_-_119547744_119547759	0.264869	AACACUG	ENSMUST00000026670.4|Nptx1|ENSMUSG00000025582.4|neuronal pentraxin 1
mm10_v2_chr17_-_34627365_34627525	0.259925	AACACUG	ENSMUST00000064953.8|Ppt2|ENSMUSG00000015474.10|palmitoyl-protein thioesterase 2 	ENSMUST00000170345.1|Ppt2|ENSMUSG00000015474.10|palmitoyl-protein thioesterase 2 	ENSMUST00000171121.2|Ppt2|ENSMUSG00000015474.10|palmitoyl-protein thioesterase 2 	ENSMUST00000168391.2|Ppt2|ENSMUSG00000015474.10|palmitoyl-protein thioesterase 2 	ENSMUST00000169067.2|Ppt2|ENSMUSG00000015474.10|palmitoyl-protein thioesterase 2
mm10_v2_chr2_+_153031852_153032014	0.250508	AACACUG	ENSMUST00000037235.6|Xkr7|ENSMUSG00000042631.7|X Kell blood group precursor related family member 7 homolog
mm10_v2_chr4_+_21931291_21931366	0.24829	AACACUG	ENSMUST00000029908.7|Faxc|ENSMUSG00000028246.7|failed axon connections homolog (Drosophila)
mm10_v2_chr2_-_104816696_104816792	0.233684	AACACUG	ENSMUST00000117237.1|Qser1|ENSMUSG00000074994.4|glutamine and serine rich 1
mm10_v2_chr7_-_133015248_133015329	0.232057	AACACUG	ENSMUST00000169570.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr7_+_59228743_59228769	0.230634	AACACUG	ENSMUST00000107537.1|Ube3a|ENSMUSG00000025326.8|ubiquitin protein ligase E3A
mm10_v2_chr12_+_40446050_40446099	0.226786	AACACUG	ENSMUST00000037488.6|Dock4|ENSMUSG00000035954.9|dedicator of cytokinesis 4
mm10_v2_chr1_+_156558844_156559049	0.224167	AACACUG	ENSMUST00000166172.2|Abl2|ENSMUSG00000026596.7|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene) 	ENSMUST00000027888.6|Abl2|ENSMUSG00000026596.7|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)
mm10_v2_chr18_+_11052487_11052510	0.215496	AACACUG	ENSMUST00000047762.7|Gata6|ENSMUSG00000005836.8|GATA binding protein 6
mm10_v2_chr3_+_68468162_68468209	0.214369	AACACUG	ENSMUST00000182532.1|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr5_+_76840597_76840637	0.208149	AACACUG	ENSMUST00000120639.2|C530008M17Rik|ENSMUSG00000036377.12|RIKEN cDNA C530008M17 gene 	ENSMUST00000163347.1|C530008M17Rik|ENSMUSG00000036377.12|RIKEN cDNA C530008M17 gene 	ENSMUST00000121851.1|C530008M17Rik|ENSMUSG00000036377.12|RIKEN cDNA C530008M17 gene
mm10_v2_chr13_-_43304153_43304213	0.198645	AACACUG	ENSMUST00000055341.5|Gfod1|ENSMUSG00000051335.5|glucose-fructose oxidoreductase domain containing 1
mm10_v2_chr3_-_144570136_144570227	0.196783	AACACUG	ENSMUST00000043325.7|Hs2st1|ENSMUSG00000040151.8|heparan sulfate 2-O-sulfotransferase 1
mm10_v2_chr4_+_101419277_101419332	0.194867	AACACUG	ENSMUST00000102780.1|Ak4|ENSMUSG00000028527.12|adenylate kinase 4 	ENSMUST00000106946.1|Ak4|ENSMUSG00000028527.12|adenylate kinase 4 	ENSMUST00000106945.1|Ak4|ENSMUSG00000028527.12|adenylate kinase 4
mm10_v2_chr13_-_74062262_74062315	0.194357	AACACUG	ENSMUST00000036456.6|Cep72|ENSMUSG00000021572.8|centrosomal protein 72
mm10_v2_chr4_+_11191726_11191789	0.191898	AACACUG	ENSMUST00000029866.9|Ccne2|ENSMUSG00000028212.10|cyclin E2 	ENSMUST00000108324.3|Ccne2|ENSMUSG00000028212.10|cyclin E2
mm10_v2_chr14_+_27622433_27622543	0.189106	AACACUG	ENSMUST00000090302.5|Erc2|ENSMUSG00000040640.9|ELKS/RAB6-interacting/CAST family member 2
mm10_v2_chr10_-_68278713_68278735	0.185886	AACACUG	ENSMUST00000020106.7|Arid5b|ENSMUSG00000019947.9|AT rich interactive domain 5B (MRF1-like)
mm10_v2_chr12_-_118301429_118301458	0.185786	AACACUG	ENSMUST00000026367.9|Sp4|ENSMUSG00000025323.9|trans-acting transcription factor 4
mm10_v2_chr19_+_28835074_28835116	0.183988	AACACUG	ENSMUST00000025875.4|Slc1a1|ENSMUSG00000024935.4|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1
mm10_v2_chr13_+_75839868_75839881	0.181335	AACACUG	ENSMUST00000022082.7|Glrx|ENSMUSG00000021591.7|glutaredoxin
mm10_v2_chr2_-_3475027_3475086	0.178465	AACACUG	ENSMUST00000027956.2|Suv39h2|ENSMUSG00000026646.10|suppressor of variegation 3-9 homolog 2 (Drosophila)
mm10_v2_chr12_+_29528382_29528468	0.176568	AACACUG	ENSMUST00000049784.9|Myt1l|ENSMUSG00000061911.8|myelin transcription factor 1-like
mm10_v2_chr13_-_40733768_40733836	0.176239	AACACUG	ENSMUST00000110193.2|Tfap2a|ENSMUSG00000021359.9|transcription factor AP-2, alpha
mm10_v2_chr6_+_7844806_7844859	0.174807	AACACUG	ENSMUST00000040159.4|C1galt1|ENSMUSG00000042460.4|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
mm10_v2_chr11_-_90390895_90390926	0.17185	AACACUG	ENSMUST00000004051.7|Hlf|ENSMUSG00000003949.10|hepatic leukemia factor
mm10_v2_chr4_+_28813125_28813136	0.171696	AACACUG	ENSMUST00000029964.5|Epha7|ENSMUSG00000028289.6|Eph receptor A7 	ENSMUST00000080934.4|Epha7|ENSMUSG00000028289.6|Eph receptor A7
mm10_v2_chr19_-_59345746_59345853	0.169646	AACACUG	ENSMUST00000099274.2|Pdzd8|ENSMUSG00000074746.2|PDZ domain containing 8
mm10_v2_chr12_+_117516479_117516534	0.168936	AACACUG	ENSMUST00000109691.2|Rapgef5|ENSMUSG00000041992.8|Rap guanine nucleotide exchange factor (GEF) 5
mm10_v2_chrX_-_164076100_164076150	0.163434	AACACUG	ENSMUST00000037928.2|Siah1b|ENSMUSG00000040749.5|seven in absentia 1B 	ENSMUST00000071667.2|Siah1b|ENSMUSG00000040749.5|seven in absentia 1B
mm10_v2_chr18_+_4921662_4921726	0.156411	AACACUG	ENSMUST00000143254.1|Svil|ENSMUSG00000024236.11|supervillin
mm10_v2_chr6_+_14901344_14901364	0.155375	AACACUG	ENSMUST00000115477.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr12_-_98737405_98737515	0.154348	AACACUG	ENSMUST00000170188.1|Ptpn21|ENSMUSG00000021009.8|protein tyrosine phosphatase, non-receptor type 21
mm10_v2_chr5_+_93093428_93093457	0.151935	AACACUG	ENSMUST00000074733.7|Sept11|ENSMUSG00000058013.8|septin 11
mm10_v2_chr3_+_137864573_137864613	0.150079	AACACUG	ENSMUST00000174561.1|H2afz|ENSMUSG00000037894.7|H2A histone family, member Z 	ENSMUST00000173790.1|H2afz|ENSMUSG00000037894.7|H2A histone family, member Z
mm10_v2_chr9_-_72111827_72111895	0.147663	AACACUG	ENSMUST00000183404.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12 	ENSMUST00000184783.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr7_+_130577334_130577484	0.147188	AACACUG	ENSMUST00000059145.7|Tacc2|ENSMUSG00000030852.9|transforming, acidic coiled-coil containing protein 2 	ENSMUST00000084513.4|Tacc2|ENSMUSG00000030852.9|transforming, acidic coiled-coil containing protein 2
mm10_v2_chr3_+_116594959_116595031	0.14513	AACACUG	ENSMUST00000029571.8|Sass6|ENSMUSG00000027959.9|spindle assembly 6 homolog (C. elegans)
mm10_v2_chr5_-_25498702_25498745	0.144923	AACACUG	ENSMUST00000173073.1|Kmt2c|ENSMUSG00000038056.9|lysine (K)-specific methyltransferase 2C 	ENSMUST00000045291.7|Kmt2c|ENSMUSG00000038056.9|lysine (K)-specific methyltransferase 2C
mm10_v2_chr11_-_65788275_65788318	0.143356	AACACUG	ENSMUST00000152096.1|Map2k4|ENSMUSG00000033352.5|mitogen-activated protein kinase kinase 4 	ENSMUST00000046963.3|Map2k4|ENSMUSG00000033352.5|mitogen-activated protein kinase kinase 4
mm10_v2_chr5_-_86172747_86172803	0.137185	AACACUG	ENSMUST00000039373.7|Uba6|ENSMUSG00000035898.7|ubiquitin-like modifier activating enzyme 6
mm10_v2_chr2_-_6130117_6130211	0.135047	AACACUG	ENSMUST00000126551.1|Proser2|ENSMUSG00000045319.7|proline and serine rich 2 	ENSMUST00000054254.5|Proser2|ENSMUSG00000045319.7|proline and serine rich 2 	ENSMUST00000114942.2|Proser2|ENSMUSG00000045319.7|proline and serine rich 2
mm10_v2_chr3_+_63976106_63976135	0.132294	AACACUG	ENSMUST00000029405.7|Gmps|ENSMUSG00000027823.8|guanine monophosphate synthetase
mm10_v2_chr2_-_33431324_33431324	0.130116	AACACUG	ENSMUST00000113158.1|Zbtb34|ENSMUSG00000068966.4|zinc finger and BTB domain containing 34
mm10_v2_chr11_-_49712674_49712726	0.128307	AACACUG	ENSMUST00000020624.6|Cnot6|ENSMUSG00000020362.7|CCR4-NOT transcription complex, subunit 6 	ENSMUST00000145353.1|Cnot6|ENSMUSG00000020362.7|CCR4-NOT transcription complex, subunit 6
mm10_v2_chr12_+_4917376_4917438	0.12724	AACACUG	ENSMUST00000045664.5|Atad2b|ENSMUSG00000052812.4|ATPase family, AAA domain containing 2B
mm10_v2_chr4_+_40143080_40143107	0.126335	AACACUG	ENSMUST00000102973.3|Aco1|ENSMUSG00000028405.9|aconitase 1
mm10_v2_chr4_-_108301045_108301107	0.126288	AACACUG	ENSMUST00000043616.6|Zyg11b|ENSMUSG00000034636.9|zyg-ll family member B, cell cycle regulator
mm10_v2_chr12_-_31634592_31634677	0.126237	AACACUG	ENSMUST00000020979.7|Bcap29|ENSMUSG00000020650.8|B cell receptor associated protein 29 	ENSMUST00000177962.1|Bcap29|ENSMUSG00000020650.8|B cell receptor associated protein 29
mm10_v2_chr10_+_60106198_60106221	0.125679	AACACUG	ENSMUST00000121820.2|Spock2|ENSMUSG00000058297.10|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2
mm10_v2_chr18_+_10725530_10725564	0.124823	AACACUG	ENSMUST00000052838.4|Mib1|ENSMUSG00000024294.7|mindbomb homolog 1 (Drosophila)
mm10_v2_chr4_+_127021311_127021339	0.124559	AACACUG	ENSMUST00000030623.7|Sfpq|ENSMUSG00000028820.7|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
mm10_v2_chr7_+_27258725_27258815	0.122883	AACACUG	ENSMUST00000079258.6|Numbl|ENSMUSG00000063160.6|numb-like
mm10_v2_chr9_+_47530173_47530373	0.12258	AACACUG	ENSMUST00000114548.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000152459.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000143026.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000085909.2|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000114547.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000034581.3|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1
mm10_v2_chr5_-_52566264_52566312	0.122068	AACACUG	ENSMUST00000039750.5|Lgi2|ENSMUSG00000039252.7|leucine-rich repeat LGI family, member 2
mm10_v2_chr18_+_5591860_5591902	0.120414	AACACUG	ENSMUST00000025081.5|Zeb1|ENSMUSG00000024238.7|zinc finger E-box binding homeobox 1 	ENSMUST00000159390.1|Zeb1|ENSMUSG00000024238.7|zinc finger E-box binding homeobox 1
mm10_v2_chr14_-_8666236_8666279	0.117809	AACACUG	ENSMUST00000102996.3|4930452B06Rik|ENSMUSG00000021747.11|RIKEN cDNA 4930452B06 gene
mm10_v2_chr14_-_67072465_67072476	0.115551	AACACUG	ENSMUST00000089230.5|Ppp2r2a|ENSMUSG00000022052.8|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform
mm10_v2_chr18_+_42511496_42511521	0.114615	AACACUG	ENSMUST00000025375.7|Tcerg1|ENSMUSG00000024498.9|transcription elongation regulator 1 (CA150)
mm10_v2_chr10_+_20312461_20312492	0.114283	AACACUG	ENSMUST00000092678.3|Bclaf1|ENSMUSG00000037608.9|BCL2-associated transcription factor 1 	ENSMUST00000043881.5|Bclaf1|ENSMUSG00000037608.9|BCL2-associated transcription factor 1
mm10_v2_chr17_-_74294834_74294883	0.113361	AACACUG	ENSMUST00000078459.6|Memo1|ENSMUSG00000058704.7|mediator of cell motility 1
mm10_v2_chr6_-_38876163_38876234	0.113285	AACACUG	ENSMUST00000161779.1|Hipk2|ENSMUSG00000061436.9|homeodomain interacting protein kinase 2
mm10_v2_chr11_-_75348261_75348324	0.113264	AACACUG	ENSMUST00000000767.5|Rpa1|ENSMUSG00000000751.7|replication protein A1 	ENSMUST00000092907.5|Rpa1|ENSMUSG00000000751.7|replication protein A1
mm10_v2_chr18_+_22345089_22345089	0.113014	AACACUG	ENSMUST00000120223.1|Asxl3|ENSMUSG00000045215.10|additional sex combs like 3 (Drosophila) 	ENSMUST00000097655.3|Asxl3|ENSMUSG00000045215.10|additional sex combs like 3 (Drosophila)
mm10_v2_chr10_-_41072279_41072290	0.11111	AACACUG	ENSMUST00000061796.6|Gpr6|ENSMUSG00000046922.6|G protein-coupled receptor 6
mm10_v2_chr18_+_32377176_32377289	0.109254	AACACUG	ENSMUST00000091967.5|Bin1|ENSMUSG00000024381.9|bridging integrator 1 	ENSMUST00000025239.7|Bin1|ENSMUSG00000024381.9|bridging integrator 1
mm10_v2_chr17_+_88440711_88440741	0.105086	AACACUG	ENSMUST00000112238.2|Foxn2|ENSMUSG00000034998.12|forkhead box N2 	ENSMUST00000155640.1|Foxn2|ENSMUSG00000034998.12|forkhead box N2
mm10_v2_chr8_+_109868586_109868611	0.104175	AACACUG	ENSMUST00000179721.1|Phlpp2|ENSMUSG00000031732.6|PH domain and leucine rich repeat protein phosphatase 2 	ENSMUST00000034175.4|Phlpp2|ENSMUSG00000031732.6|PH domain and leucine rich repeat protein phosphatase 2
mm10_v2_chr11_-_87359011_87359081	0.103784	AACACUG	ENSMUST00000055438.4|Ppm1e|ENSMUSG00000046442.4|protein phosphatase 1E (PP2C domain containing)
mm10_v2_chr6_+_117863069_117863103	0.100894	AACACUG	ENSMUST00000079405.8|Zfp239|ENSMUSG00000042097.11|zinc finger protein 239 	ENSMUST00000172088.1|Zfp239|ENSMUSG00000042097.11|zinc finger protein 239
mm10_v2_chr5_+_3343893_3343945	0.100443	AACACUG	ENSMUST00000165117.1|Cdk6|ENSMUSG00000040274.5|cyclin-dependent kinase 6
mm10_v2_chr11_-_76846968_76847045	0.10021	AACACUG	ENSMUST00000021201.5|Cpd|ENSMUSG00000020841.5|carboxypeptidase D
mm10_v2_chr11_-_84525514_84525542	0.098634	AACACUG	ENSMUST00000018842.7|Lhx1|ENSMUSG00000018698.9|LIM homeobox protein 1
mm10_v2_chr17_+_8165501_8165540	0.0981069	AACACUG	ENSMUST00000097419.3|Fgfr1op|ENSMUSG00000069135.5|Fgfr1 oncogene partner 	ENSMUST00000024636.8|Fgfr1op|ENSMUSG00000069135.5|Fgfr1 oncogene partner
mm10_v2_chr1_-_176807124_176807124	0.098037	AACACUG	ENSMUST00000057037.7|Cep170|ENSMUSG00000057335.6|centrosomal protein 170
mm10_v2_chr16_-_78576649_78576666	0.0949238	AACACUG	ENSMUST00000114220.1|D16Ertd472e|ENSMUSG00000022864.7|DNA segment, Chr 16, ERATO Doi 472, expressed 	ENSMUST00000114219.1|D16Ertd472e|ENSMUSG00000022864.7|DNA segment, Chr 16, ERATO Doi 472, expressed 	ENSMUST00000114218.1|D16Ertd472e|ENSMUSG00000022864.7|DNA segment, Chr 16, ERATO Doi 472, expressed
mm10_v2_chr2_-_156111954_156111978	0.0937528	AACACUG	ENSMUST00000059647.5|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12 	ENSMUST00000109604.2|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12 	ENSMUST00000142960.2|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000138068.1|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12 	ENSMUST00000136296.2|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000128499.1|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12
mm10_v2_chr3_-_100489324_100489354	0.0928696	AACACUG	ENSMUST00000061455.8|Fam46c|ENSMUSG00000044468.8|family with sequence similarity 46, member C
mm10_v2_chr13_-_98891036_98891063	0.0927257	AACACUG	ENSMUST00000109399.2|Tnpo1|ENSMUSG00000009470.10|transportin 1
mm10_v2_chr9_-_103364970_103364996	0.0906025	AACACUG	ENSMUST00000116517.2|Cdv3|ENSMUSG00000032803.8|carnitine deficiency-associated gene expressed in ventricle 3
mm10_v2_chr10_-_118868903_118868903	0.0899821	AACACUG	ENSMUST00000004281.8|Dyrk2|ENSMUSG00000028630.8|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
mm10_v2_chr9_-_97111117_97111159	0.0891366	AACACUG	ENSMUST00000085206.4|Slc25a36|ENSMUSG00000032449.7|solute carrier family 25, member 36
mm10_v2_chr17_+_86167777_86167795	0.0876486	AACACUG	ENSMUST00000097275.2|Prkce|ENSMUSG00000045038.8|protein kinase C, epsilon
mm10_v2_chr11_-_61579637_61579707	0.0872078	AACACUG	ENSMUST00000147501.1|Epn2|ENSMUSG00000001036.11|epsin 2 	ENSMUST00000146455.1|Epn2|ENSMUSG00000001036.11|epsin 2 	ENSMUST00000108711.1|Epn2|ENSMUSG00000001036.11|epsin 2 	ENSMUST00000108712.1|Epn2|ENSMUSG00000001036.11|epsin 2 	ENSMUST00000001063.8|Epn2|ENSMUSG00000001036.11|epsin 2 	ENSMUST00000108713.1|Epn2|ENSMUSG00000001036.11|epsin 2 	ENSMUST00000179936.1|Epn2|ENSMUSG00000001036.11|epsin 2 	ENSMUST00000178202.1|Epn2|ENSMUSG00000001036.11|epsin 2
mm10_v2_chr13_-_47106176_47106206	0.0867836	AACACUG	ENSMUST00000021807.6|Dek|ENSMUSG00000021377.8|DEK oncogene (DNA binding) 	ENSMUST00000135278.1|Dek|ENSMUSG00000021377.8|DEK oncogene (DNA binding)
mm10_v2_chr7_+_27862557_27862557	0.0867826	AACACUG	ENSMUST00000053722.8|Zfp607|ENSMUSG00000020420.7|zinc finger proten 607
mm10_v2_chr4_-_132212255_132212303	0.0863531	AACACUG	ENSMUST00000152796.1|Ythdf2|ENSMUSG00000040025.11|YTH domain family 2
mm10_v2_chr15_-_44428303_44428337	0.0856663	AACACUG	ENSMUST00000038719.6|Nudcd1|ENSMUSG00000038736.9|NudC domain containing 1
mm10_v2_chr2_+_152226839_152226908	0.0856578	AACACUG	ENSMUST00000099224.3|Csnk2a1|ENSMUSG00000074698.4|casein kinase 2, alpha 1 polypeptide 	ENSMUST00000124791.1|Csnk2a1|ENSMUSG00000074698.4|casein kinase 2, alpha 1 polypeptide 	ENSMUST00000133119.1|Csnk2a1|ENSMUSG00000074698.4|casein kinase 2, alpha 1 polypeptide
mm10_v2_chr18_-_77713978_77714010	0.0855057	AACACUG	ENSMUST00000074653.4|8030462N17Rik|ENSMUSG00000047466.9|RIKEN cDNA 8030462N17 gene
mm10_v2_chr15_-_79441999_79442065	0.0852376	AACACUG	ENSMUST00000117786.1|Csnk1e|ENSMUSG00000022433.12|casein kinase 1, epsilon 	ENSMUST00000120859.1|Csnk1e|ENSMUSG00000022433.12|casein kinase 1, epsilon
mm10_v2_chr12_+_51348019_51348061	0.0846115	AACACUG	ENSMUST00000054308.6|G2e3|ENSMUSG00000035293.7|G2/M-phase specific E3 ubiquitin ligase
mm10_v2_chr6_-_32588192_32588213	0.0838497	AACACUG	ENSMUST00000115096.2|Plxna4|ENSMUSG00000029765.10|plexin A4
mm10_v2_chr5_-_106696819_106696839	0.0835182	AACACUG	ENSMUST00000127434.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000112696.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000112698.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644
mm10_v2_chr3_-_121263159_121263252	0.0818347	AACACUG	ENSMUST00000128909.1|Tmem56|ENSMUSG00000028132.9|transmembrane protein 56
mm10_v2_chr3_-_123236134_123236157	0.0812352	AACACUG	ENSMUST00000106427.1|Synpo2|ENSMUSG00000050315.7|synaptopodin 2 	ENSMUST00000106426.1|Synpo2|ENSMUSG00000050315.7|synaptopodin 2 	ENSMUST00000051443.5|Synpo2|ENSMUSG00000050315.7|synaptopodin 2
mm10_v2_chr5_+_108065742_108065767	0.0812174	AACACUG	ENSMUST00000081567.4|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2 	ENSMUST00000170319.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2 	ENSMUST00000112626.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2
mm10_v2_chr9_-_104262900_104262949	0.0805734	AACACUG	ENSMUST00000035170.6|Dnajc13|ENSMUSG00000032560.7|DnaJ (Hsp40) homolog, subfamily C, member 13
mm10_v2_chr12_-_108003594_108003613	0.0797849	AACACUG	ENSMUST00000066060.4|Bcl11b|ENSMUSG00000048251.9|B cell leukemia/lymphoma 11B
mm10_v2_chr11_+_77686155_77686179	0.0797745	AACACUG	ENSMUST00000100802.4|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2 	ENSMUST00000181023.1|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2
mm10_v2_chr3_-_132950043_132950291	0.0795187	AACACUG	ENSMUST00000117164.1|Npnt|ENSMUSG00000040998.12|nephronectin 	ENSMUST00000093971.4|Npnt|ENSMUSG00000040998.12|nephronectin 	ENSMUST00000042729.9|Npnt|ENSMUSG00000040998.12|nephronectin 	ENSMUST00000042744.9|Npnt|ENSMUSG00000040998.12|nephronectin 	ENSMUST00000117811.1|Npnt|ENSMUSG00000040998.12|nephronectin
mm10_v2_chr12_-_27342696_27342726	0.078546	AACACUG	ENSMUST00000079063.5|Sox11|ENSMUSG00000063632.5|SRY-box containing gene 11
mm10_v2_chr4_-_135494615_135494628	0.0782366	AACACUG	ENSMUST00000102549.3|Nipal3|ENSMUSG00000028803.12|NIPA-like domain containing 3
mm10_v2_chr10_-_62880014_62880014	0.0778368	AACACUG	ENSMUST00000050826.7|Tet1|ENSMUSG00000047146.9|tet methylcytosine dioxygenase 1
mm10_v2_chr8_+_46163651_46163729	0.0776301	AACACUG	ENSMUST00000034048.6|4933411K20Rik|ENSMUSG00000031631.9|RIKEN cDNA 4933411K20 gene 	ENSMUST00000145229.1|4933411K20Rik|ENSMUSG00000031631.9|RIKEN cDNA 4933411K20 gene
mm10_v2_chr2_-_168601620_168601657	0.0762864	AACACUG	ENSMUST00000171689.1|Nfatc2|ENSMUSG00000027544.10|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 	ENSMUST00000137451.1|Nfatc2|ENSMUSG00000027544.10|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2
mm10_v2_chr18_-_31447383_31447415	0.0754745	AACACUG	ENSMUST00000025110.3|Syt4|ENSMUSG00000024261.5|synaptotagmin IV
mm10_v2_chr9_+_72806874_72806874	0.074341	AACACUG	ENSMUST00000055535.8|Prtg|ENSMUSG00000036030.9|protogenin homolog (Gallus gallus)
mm10_v2_chr3_-_138143352_138143396	0.0734195	AACACUG	ENSMUST00000098580.2|Mttp|ENSMUSG00000028158.8|microsomal triglyceride transfer protein
mm10_v2_chr15_+_92051153_92051170	0.072078	AACACUG	ENSMUST00000169825.1|Cntn1|ENSMUSG00000055022.8|contactin 1
mm10_v2_chr17_+_3114957_3114982	0.0717151	AACACUG	ENSMUST00000076734.6|Scaf8|ENSMUSG00000046201.8|SR-related CTD-associated factor 8
mm10_v2_chr9_+_65908967_65909020	0.071607	AACACUG	ENSMUST00000034949.3|Csnk1g1|ENSMUSG00000032384.9|casein kinase 1, gamma 1 	ENSMUST00000154589.1|Csnk1g1|ENSMUSG00000032384.9|casein kinase 1, gamma 1
mm10_v2_chr19_+_53600377_53600435	0.0715291	AACACUG	ENSMUST00000025930.9|Smc3|ENSMUSG00000024974.10|structural maintenance of chromosomes 3
mm10_v2_chr5_-_135934590_135934613	0.0711272	AACACUG	ENSMUST00000055808.5|Ywhag|ENSMUSG00000051391.8|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm10_v2_chr1_-_136346074_136346145	0.0707409	AACACUG	ENSMUST00000048309.6|Camsap2|ENSMUSG00000041570.9|calmodulin regulated spectrin-associated protein family, member 2
mm10_v2_chr5_+_150259922_150259936	0.0703741	AACACUG	ENSMUST00000087204.5|Fry|ENSMUSG00000056602.8|furry homolog (Drosophila)
mm10_v2_chr5_-_29478470_29478597	0.070353	AACACUG	ENSMUST00000001608.7|Mnx1|ENSMUSG00000001566.8|motor neuron and pancreas homeobox 1 	ENSMUST00000165512.2|Mnx1|ENSMUSG00000001566.8|motor neuron and pancreas homeobox 1
mm10_v2_chr4_-_121098190_121098250	0.0700754	AACACUG	ENSMUST00000058754.2|Zmpste24|ENSMUSG00000043207.4|zinc metallopeptidase, STE24
mm10_v2_chr19_+_47579602_47579681	0.0697765	AACACUG	ENSMUST00000026043.5|Slk|ENSMUSG00000025060.8|STE20-like kinase
mm10_v2_chr9_+_59291565_59291577	0.0697121	AACACUG	ENSMUST00000026266.7|Adpgk|ENSMUSG00000025236.10|ADP-dependent glucokinase
mm10_v2_chr1_-_54926311_54926402	0.0692932	AACACUG	ENSMUST00000179030.1|Ankrd44|ENSMUSG00000052331.8|ankyrin repeat domain 44 	ENSMUST00000044359.9|Ankrd44|ENSMUSG00000052331.8|ankyrin repeat domain 44
mm10_v2_chr12_+_72536342_72536396	0.0688438	AACACUG	ENSMUST00000044352.6|Pcnxl4|ENSMUSG00000034501.6|pecanex-like 4 (Drosophila)
mm10_v2_chr11_+_80428598_80428656	0.0681701	AACACUG	ENSMUST00000173938.1|Psmd11|ENSMUSG00000017428.10|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 	ENSMUST00000017572.7|Psmd11|ENSMUSG00000017428.10|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
mm10_v2_chr15_+_80711292_80711340	0.0670183	AACACUG	ENSMUST00000067689.7|Tnrc6b|ENSMUSG00000047888.9|trinucleotide repeat containing 6b
mm10_v2_chr10_-_94944578_94944578	0.066498	AACACUG	ENSMUST00000099337.3|Plxnc1|ENSMUSG00000074785.4|plexin C1
mm10_v2_chr11_-_80080928_80081001	0.0661352	AACACUG	ENSMUST00000103233.3|Crlf3|ENSMUSG00000017561.10|cytokine receptor-like factor 3 	ENSMUST00000061283.8|Crlf3|ENSMUSG00000017561.10|cytokine receptor-like factor 3
mm10_v2_chr15_+_58415456_58415512	0.0660334	AACACUG	ENSMUST00000037270.3|D15Ertd621e|ENSMUSG00000037119.3|DNA segment, Chr 15, ERATO Doi 621, expressed
mm10_v2_chr2_-_25983236_25983290	0.0653879	AACACUG	ENSMUST00000114167.2|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1 	ENSMUST00000091268.4|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1 	ENSMUST00000183461.1|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1
mm10_v2_chr1_-_30949756_30949770	0.0640929	AACACUG	ENSMUST00000076587.3|Ptp4a1|ENSMUSG00000026064.9|protein tyrosine phosphatase 4a1 	ENSMUST00000027232.7|Ptp4a1|ENSMUSG00000026064.9|protein tyrosine phosphatase 4a1
mm10_v2_chr6_+_30401866_30401965	0.0636969	AACACUG	ENSMUST00000068240.6|Klhdc10|ENSMUSG00000029775.8|kelch domain containing 10 	ENSMUST00000068259.6|Klhdc10|ENSMUSG00000029775.8|kelch domain containing 10
mm10_v2_chr6_+_8948608_8948619	0.0631453	AACACUG	ENSMUST00000160300.1|Nxph1|ENSMUSG00000046178.3|neurexophilin 1
mm10_v2_chr5_-_149053038_149053053	0.0628737	AACACUG	ENSMUST00000085546.6|Hmgb1|ENSMUSG00000066551.6|high mobility group box 1
mm10_v2_chr7_-_73541738_73541758	0.0625451	AACACUG	ENSMUST00000169922.2|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr8_+_65618009_65618091	0.0625191	AACACUG	ENSMUST00000110258.1|March1|ENSMUSG00000036469.10|membrane-associated ring finger (C3HC4) 1 	ENSMUST00000110256.1|March1|ENSMUSG00000036469.10|membrane-associated ring finger (C3HC4) 1 	ENSMUST00000110255.1|March1|ENSMUSG00000036469.10|membrane-associated ring finger (C3HC4) 1
mm10_v2_chr14_+_14012491_14012693	0.0625022	AACACUG	ENSMUST00000022257.2|Atxn7|ENSMUSG00000021738.4|ataxin 7
mm10_v2_chr6_-_13608011_13608100	0.0622065	AACACUG	ENSMUST00000031554.2|Tmem168|ENSMUSG00000029569.3|transmembrane protein 168
mm10_v2_chr4_+_65604984_65605052	0.0620605	AACACUG	ENSMUST00000050850.7|Trim32|ENSMUSG00000051675.7|tripartite motif-containing 32 	ENSMUST00000107366.1|Trim32|ENSMUSG00000051675.7|tripartite motif-containing 32
mm10_v2_chr9_+_52047150_52047163	0.061287	AACACUG	ENSMUST00000163153.1|Rdx|ENSMUSG00000032050.10|radixin
mm10_v2_chr18_+_69345721_69345811	0.0611652	AACACUG	ENSMUST00000078486.6|Tcf4|ENSMUSG00000053477.9|transcription factor 4 	ENSMUST00000114982.1|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr13_-_89742490_89742515	0.0611354	AACACUG	ENSMUST00000109546.2|Vcan|ENSMUSG00000021614.10|versican
mm10_v2_chr11_+_111066154_111066174	0.061067	AACACUG	ENSMUST00000042970.2|Kcnj2|ENSMUSG00000041695.2|potassium inwardly-rectifying channel, subfamily J, member 2
mm10_v2_chrX_-_51018011_51018032	0.0594339	AACACUG	ENSMUST00000053593.7|Rap2c|ENSMUSG00000050029.7|RAP2C, member of RAS oncogene family
mm10_v2_chrX_-_143933204_143933311	0.0590715	AACACUG	ENSMUST00000112851.1|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000112856.2|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000033642.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr9_-_27155418_27155425	0.0582631	AACACUG	ENSMUST00000167074.1|Jam3|ENSMUSG00000031990.8|junction adhesion molecule 3 	ENSMUST00000034472.8|Jam3|ENSMUSG00000031990.8|junction adhesion molecule 3
mm10_v2_chr2_+_60209887_60210073	0.0579085	AACACUG	ENSMUST00000102748.4|March7|ENSMUSG00000026977.11|membrane-associated ring finger (C3HC4) 7 	ENSMUST00000102747.1|March7|ENSMUSG00000026977.11|membrane-associated ring finger (C3HC4) 7
mm10_v2_chr11_+_93886157_93886219	0.057868	AACACUG	ENSMUST00000063718.4|Mbtd1|ENSMUSG00000059474.7|mbt domain containing 1 	ENSMUST00000107854.2|Mbtd1|ENSMUSG00000059474.7|mbt domain containing 1
mm10_v2_chr16_+_32608920_32608964	0.0578111	AACACUG	ENSMUST00000023486.8|Tfrc|ENSMUSG00000022797.9|transferrin receptor
mm10_v2_chr16_+_42907563_42907684	0.0561732	AACACUG	ENSMUST00000151244.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000114694.2|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr2_-_73529725_73529736	0.0558503	AACACUG	ENSMUST00000094681.4|Wipf1|ENSMUSG00000075284.4|WAS/WASL interacting protein family, member 1
mm10_v2_chr7_+_16875302_16875392	0.0553014	AACACUG	ENSMUST00000108493.1|Dact3|ENSMUSG00000078794.3|dapper homolog 3, antagonist of beta-catenin (xenopus)
mm10_v2_chr2_+_160645881_160645896	0.0549796	AACACUG	ENSMUST00000109468.2|Top1|ENSMUSG00000070544.6|topoisomerase (DNA) I
mm10_v2_chr3_-_51277470_51277514	0.0548703	AACACUG	ENSMUST00000108053.2|Elf2|ENSMUSG00000037174.12|E74-like factor 2 	ENSMUST00000108051.1|Elf2|ENSMUSG00000037174.12|E74-like factor 2
mm10_v2_chr1_-_181211437_181211552	0.0547918	AACACUG	ENSMUST00000162963.1|Wdr26|ENSMUSG00000038733.7|WD repeat domain 26 	ENSMUST00000162819.1|Wdr26|ENSMUSG00000038733.7|WD repeat domain 26
mm10_v2_chr7_-_118491912_118491975	0.0539426	AACACUG	ENSMUST00000178344.1|Itpripl2|ENSMUSG00000095115.1|inositol 1,4,5-triphosphate receptor interacting protein-like 2
mm10_v2_chr2_-_12419456_12419474	0.0535038	AACACUG	ENSMUST00000154899.1|Fam188a|ENSMUSG00000026767.6|family with sequence similarity 188, member A 	ENSMUST00000028105.6|Fam188a|ENSMUSG00000026767.6|family with sequence similarity 188, member A
mm10_v2_chr8_-_110039330_110039350	0.0520767	AACACUG	ENSMUST00000109222.2|Chst4|ENSMUSG00000035930.8|carbohydrate (chondroitin 6/keratan) sulfotransferase 4
mm10_v2_chr3_+_30602056_30602096	0.0510972	AACACUG	ENSMUST00000047502.7|Mynn|ENSMUSG00000037730.8|myoneurin
mm10_v2_chr14_+_48120841_48120869	0.0506142	AACACUG	ENSMUST00000073150.4|Peli2|ENSMUSG00000021846.8|pellino 2
mm10_v2_chr12_+_32820304_32820362	0.0502978	AACACUG	ENSMUST00000020886.7|Nampt|ENSMUSG00000020572.7|nicotinamide phosphoribosyltransferase
mm10_v2_chr11_+_105589970_105590028	0.0502289	AACACUG	ENSMUST00000168598.1|Tanc2|ENSMUSG00000053580.9|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 	ENSMUST00000100330.3|Tanc2|ENSMUSG00000053580.9|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm10_v2_chr7_-_89338709_89338795	0.0495126	AACACUG	ENSMUST00000137723.1|Tmem135|ENSMUSG00000039428.4|transmembrane protein 135 	ENSMUST00000117852.1|Tmem135|ENSMUSG00000039428.4|transmembrane protein 135 	ENSMUST00000041968.3|Tmem135|ENSMUSG00000039428.4|transmembrane protein 135
mm10_v2_chr18_-_78123324_78123426	0.0483933	AACACUG	ENSMUST00000160292.1|Slc14a1|ENSMUSG00000059336.8|solute carrier family 14 (urea transporter), member 1 	ENSMUST00000091813.5|Slc14a1|ENSMUSG00000059336.8|solute carrier family 14 (urea transporter), member 1
mm10_v2_chr9_-_65827544_65827576	0.0483926	AACACUG	ENSMUST00000159109.1|Zfp609|ENSMUSG00000040524.9|zinc finger protein 609
mm10_v2_chr2_+_91710900_91710970	0.0480032	AACACUG	ENSMUST00000142692.1|Harbi1|ENSMUSG00000027243.8|harbinger transposase derived 1 	ENSMUST00000090608.5|Harbi1|ENSMUSG00000027243.8|harbinger transposase derived 1
mm10_v2_chr14_-_49783327_49783394	0.0477524	AACACUG	ENSMUST00000118129.1|3632451O06Rik|ENSMUSG00000036242.8|RIKEN cDNA 3632451O06 gene 	ENSMUST00000036972.6|3632451O06Rik|ENSMUSG00000036242.8|RIKEN cDNA 3632451O06 gene
mm10_v2_chr15_-_36794498_36794547	0.0473845	AACACUG	ENSMUST00000110361.1|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 	ENSMUST00000022894.7|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 	ENSMUST00000110359.1|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm10_v2_chr11_-_98149551_98149621	0.0470744	AACACUG	ENSMUST00000103143.3|Fbxl20|ENSMUSG00000020883.12|F-box and leucine-rich repeat protein 20
mm10_v2_chr1_+_193173469_193173595	0.0460807	AACACUG	ENSMUST00000161235.1|A130010J15Rik|ENSMUSG00000079144.6|RIKEN cDNA A130010J15 gene 	ENSMUST00000110831.2|A130010J15Rik|ENSMUSG00000079144.6|RIKEN cDNA A130010J15 gene 	ENSMUST00000178744.1|A130010J15Rik|ENSMUSG00000079144.6|RIKEN cDNA A130010J15 gene
mm10_v2_chr8_+_90828820_90828842	0.045943	AACACUG	ENSMUST00000109614.2|Chd9|ENSMUSG00000056608.7|chromodomain helicase DNA binding protein 9 	ENSMUST00000048665.6|Chd9|ENSMUSG00000056608.7|chromodomain helicase DNA binding protein 9
mm10_v2_chr1_+_166379097_166379097	0.0455383	AACACUG	ENSMUST00000027846.7|Tada1|ENSMUSG00000026563.7|transcriptional adaptor 1
mm10_v2_chr16_-_16560201_16560223	0.0449788	AACACUG	ENSMUST00000162045.1|Fgd4|ENSMUSG00000022788.10|FYVE, RhoGEF and PH domain containing 4 	ENSMUST00000162124.1|Fgd4|ENSMUSG00000022788.10|FYVE, RhoGEF and PH domain containing 4 	ENSMUST00000161861.1|Fgd4|ENSMUSG00000022788.10|FYVE, RhoGEF and PH domain containing 4
mm10_v2_chr14_-_49066653_49066674	0.0438858	AACACUG	ENSMUST00000162175.1|Exoc5|ENSMUSG00000061244.7|exocyst complex component 5
mm10_v2_chr2_-_24763047_24763153	0.0437109	AACACUG	ENSMUST00000100348.3|Cacna1b|ENSMUSG00000004113.12|calcium channel, voltage-dependent, N type, alpha 1B subunit 	ENSMUST00000041342.5|Cacna1b|ENSMUSG00000004113.12|calcium channel, voltage-dependent, N type, alpha 1B subunit 	ENSMUST00000114447.1|Cacna1b|ENSMUSG00000004113.12|calcium channel, voltage-dependent, N type, alpha 1B subunit 	ENSMUST00000102939.2|Cacna1b|ENSMUSG00000004113.12|calcium channel, voltage-dependent, N type, alpha 1B subunit 	ENSMUST00000070864.7|Cacna1b|ENSMUSG00000004113.12|calcium channel, voltage-dependent, N type, alpha 1B subunit
mm10_v2_chrX_-_7188713_7188743	0.0436553	AACACUG	ENSMUST00000004428.7|Clcn5|ENSMUSG00000004317.8|chloride channel 5
mm10_v2_chr1_-_152090308_152090332	0.0434969	AACACUG	ENSMUST00000044581.7|1700025G04Rik|ENSMUSG00000032666.10|RIKEN cDNA 1700025G04 gene
mm10_v2_chr5_+_108461222_108461241	0.0430776	AACACUG	ENSMUST00000046975.5|Pcgf3|ENSMUSG00000033623.7|polycomb group ring finger 3 	ENSMUST00000112597.1|Pcgf3|ENSMUSG00000033623.7|polycomb group ring finger 3
mm10_v2_chr9_-_27030010_27030114	0.0423817	AACACUG	ENSMUST00000034470.9|Vps26b|ENSMUSG00000031988.9|vacuolar protein sorting 26 homolog B (yeast)
mm10_v2_chr2_+_15055274_15055379	0.0420267	AACACUG	ENSMUST00000069870.3|Arl5b|ENSMUSG00000017418.7|ADP-ribosylation factor-like 5B
mm10_v2_chr7_+_127967457_127967508	0.0418182	AACACUG	ENSMUST00000106251.3|Fus|ENSMUSG00000030795.12|fused in sarcoma 	ENSMUST00000077609.5|Fus|ENSMUSG00000030795.12|fused in sarcoma 	ENSMUST00000121616.2|Fus|ENSMUSG00000030795.12|fused in sarcoma
mm10_v2_chr9_+_35421541_35421616	0.0406571	AACACUG	ENSMUST00000119129.2|Cdon|ENSMUSG00000038119.8|cell adhesion molecule-related/down-regulated by oncogenes
mm10_v2_chr5_+_150673739_150673827	0.0405184	AACACUG	ENSMUST00000016569.4|Pds5b|ENSMUSG00000034021.9|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae) 	ENSMUST00000038900.8|Pds5b|ENSMUSG00000034021.9|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
mm10_v2_chr12_-_54862783_54862921	0.0404859	AACACUG	ENSMUST00000078124.7|Cfl2|ENSMUSG00000062929.7|cofilin 2, muscle
mm10_v2_chr11_+_17159263_17159357	0.0401483	AACACUG	ENSMUST00000102880.4|Ppp3r1|ENSMUSG00000033953.10|protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)
mm10_v2_chr6_-_83441674_83441684	0.039902	AACACUG	ENSMUST00000089622.4|Tet3|ENSMUSG00000034832.9|tet methylcytosine dioxygenase 3
mm10_v2_chr5_+_118560719_118560719	0.0394583	AACACUG	ENSMUST00000100816.4|Med13l|ENSMUSG00000018076.9|mediator complex subunit 13-like
mm10_v2_chr2_-_120609283_120609317	0.039051	AACACUG	ENSMUST00000102496.1|Lrrc57|ENSMUSG00000027286.10|leucine rich repeat containing 57
mm10_v2_chr4_+_148591482_148591546	0.0389751	AACACUG	ENSMUST00000006611.8|Srm|ENSMUSG00000006442.10|spermidine synthase
mm10_v2_chrX_-_157598656_157598715	0.0383483	AACACUG	ENSMUST00000149249.1|Mbtps2|ENSMUSG00000046873.12|membrane-bound transcription factor peptidase, site 2 	ENSMUST00000058098.8|Mbtps2|ENSMUSG00000046873.12|membrane-bound transcription factor peptidase, site 2
mm10_v2_chr4_-_103215147_103215201	0.0381723	AACACUG	ENSMUST00000150285.1|Slc35d1|ENSMUSG00000028521.11|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1
mm10_v2_chr1_-_165194310_165194433	0.0379178	AACACUG	ENSMUST00000043338.4|Sft2d2|ENSMUSG00000040848.6|SFT2 domain containing 2
mm10_v2_chr13_-_105054895_105054930	0.03748	AACACUG	ENSMUST00000063551.5|Rgs7bp|ENSMUSG00000021719.8|regulator of G-protein signalling 7 binding protein
mm10_v2_chr17_-_32284088_32284123	0.037256	AACACUG	ENSMUST00000119123.1|Brd4|ENSMUSG00000024002.10|bromodomain containing 4 	ENSMUST00000003726.8|Brd4|ENSMUSG00000024002.10|bromodomain containing 4 	ENSMUST00000121285.1|Brd4|ENSMUSG00000024002.10|bromodomain containing 4 	ENSMUST00000120276.1|Brd4|ENSMUSG00000024002.10|bromodomain containing 4 	ENSMUST00000114475.2|Brd4|ENSMUSG00000024002.10|bromodomain containing 4
mm10_v2_chr4_-_3938354_3938401	0.0368385	AACACUG	ENSMUST00000003369.3|Plag1|ENSMUSG00000003282.3|pleiomorphic adenoma gene 1
mm10_v2_chr11_-_78245942_78245987	0.0365369	AACACUG	ENSMUST00000002121.4|Supt6|ENSMUSG00000002052.6|suppressor of Ty 6
mm10_v2_chr10_+_128747850_128747895	0.0356291	AACACUG	ENSMUST00000163377.2|Wibg|ENSMUSG00000064030.8|within bgcn homolog (Drosophila)
mm10_v2_chr2_+_29965560_29965717	0.0355862	AACACUG	ENSMUST00000113717.1|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1 	ENSMUST00000113719.2|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1 	ENSMUST00000100225.2|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1 	ENSMUST00000113741.1|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1 	ENSMUST00000095083.4|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1 	ENSMUST00000046257.7|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1
mm10_v2_chr18_-_54990124_54990180	0.0347561	AACACUG	ENSMUST00000064763.5|Zfp608|ENSMUSG00000052713.8|zinc finger protein 608
mm10_v2_chr11_+_98701263_98701346	0.034414	AACACUG	ENSMUST00000038886.2|Csf3|ENSMUSG00000038067.2|colony stimulating factor 3 (granulocyte)
mm10_v2_chr6_+_54595111_54595243	0.0342402	AACACUG	ENSMUST00000119706.1|Plekha8|ENSMUSG00000005225.9|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8
mm10_v2_chr15_-_12592556_12592556	0.0341477	AACACUG	ENSMUST00000075317.5|Pdzd2|ENSMUSG00000022197.9|PDZ domain containing 2
mm10_v2_chr11_-_51606840_51606857	0.0341407	AACACUG	ENSMUST00000074669.3|Hnrnpab|ENSMUSG00000020358.11|heterogeneous nuclear ribonucleoprotein A/B 	ENSMUST00000101249.2|Hnrnpab|ENSMUSG00000020358.11|heterogeneous nuclear ribonucleoprotein A/B 	ENSMUST00000109103.3|Hnrnpab|ENSMUSG00000020358.11|heterogeneous nuclear ribonucleoprotein A/B
mm10_v2_chr6_+_100833606_100833663	0.0340157	AACACUG	ENSMUST00000063854.4|Ppp4r2|ENSMUSG00000052144.6|protein phosphatase 4, regulatory subunit 2
mm10_v2_chr19_+_36834215_36834297	0.0336683	AACACUG	ENSMUST00000025729.5|Tnks2|ENSMUSG00000024811.5|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2
mm10_v2_chr16_-_50432340_50432409	0.0332293	AACACUG	ENSMUST00000066037.6|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089399.4|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089404.3|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000114477.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000138166.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila)
mm10_v2_chr7_+_36698002_36698118	0.0320023	AACACUG	ENSMUST00000021641.6|Tshz3|ENSMUSG00000021217.6|teashirt zinc finger family member 3
mm10_v2_chr4_-_129189512_129189594	0.0318932	AACACUG	ENSMUST00000117965.1|S100pbp|ENSMUSG00000040928.9|S100P binding protein 	ENSMUST00000106061.2|S100pbp|ENSMUSG00000040928.9|S100P binding protein 	ENSMUST00000072431.6|S100pbp|ENSMUSG00000040928.9|S100P binding protein
mm10_v2_chr16_-_22265950_22266005	0.0311772	AACACUG	ENSMUST00000161286.1|Tra2b|ENSMUSG00000022858.9|transformer 2 beta homolog (Drosophila)
mm10_v2_chr7_+_51621830_51621891	0.0309045	AACACUG	ENSMUST00000032710.5|Slc17a6|ENSMUSG00000030500.5|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6
mm10_v2_chr2_+_68861433_68861510	0.0303049	AACACUG	ENSMUST00000028426.2|Cers6|ENSMUSG00000027035.4|ceramide synthase 6
mm10_v2_chr16_+_16983382_16983416	0.0302714	AACACUG	ENSMUST00000069107.7|Mapk1|ENSMUSG00000063358.9|mitogen-activated protein kinase 1 	ENSMUST00000023462.6|Mapk1|ENSMUSG00000063358.9|mitogen-activated protein kinase 1
mm10_v2_chr10_+_19356558_19356565	0.0302671	AACACUG	ENSMUST00000053225.5|Olig3|ENSMUSG00000045591.5|oligodendrocyte transcription factor 3
mm10_v2_chr1_+_136624901_136624949	0.0300024	AACACUG	ENSMUST00000047734.8|Zfp281|ENSMUSG00000041483.8|zinc finger protein 281 	ENSMUST00000112046.1|Zfp281|ENSMUSG00000041483.8|zinc finger protein 281
mm10_v2_chr9_-_86880414_86880467	0.0298599	AACACUG	ENSMUST00000074501.5|Snap91|ENSMUSG00000033419.9|synaptosomal-associated protein 91 	ENSMUST00000098495.3|Snap91|ENSMUSG00000033419.9|synaptosomal-associated protein 91 	ENSMUST00000074468.6|Snap91|ENSMUSG00000033419.9|synaptosomal-associated protein 91 	ENSMUST00000036347.6|Snap91|ENSMUSG00000033419.9|synaptosomal-associated protein 91
mm10_v2_chr3_+_41555723_41555745	0.0296951	AACACUG	ENSMUST00000026865.8|Phf17|ENSMUSG00000025764.8|PHD finger protein 17
mm10_v2_chr5_+_28317121_28317220	0.02927	AACACUG	ENSMUST00000090355.4|Rbm33|ENSMUSG00000048271.8|RNA binding motif protein 33 	ENSMUST00000114884.1|Rbm33|ENSMUSG00000048271.8|RNA binding motif protein 33 	ENSMUST00000059644.6|Rbm33|ENSMUSG00000048271.8|RNA binding motif protein 33 	ENSMUST00000030920.4|Rbm33|ENSMUSG00000048271.8|RNA binding motif protein 33
mm10_v2_chr9_-_110462436_110462480	0.0287306	AACACUG	ENSMUST00000111933.1|Klhl18|ENSMUSG00000054792.9|kelch-like 18
mm10_v2_chr19_+_37207528_37207587	0.0282371	AACACUG	ENSMUST00000024078.7|March5|ENSMUSG00000023307.7|membrane-associated ring finger (C3HC4) 5 	ENSMUST00000112391.1|March5|ENSMUSG00000023307.7|membrane-associated ring finger (C3HC4) 5
mm10_v2_chr11_-_22982090_22982382	0.0277889	AACACUG	ENSMUST00000160826.1|RP23-242C19.7|ENSMUSG00000098650.1|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 (B3gnt2), transcript variant 2, mRNA 	ENSMUST00000093270.5|Commd1|ENSMUSG00000051355.12|COMM domain containing 1 	ENSMUST00000071068.8|Commd1|ENSMUSG00000051355.12|COMM domain containing 1 	ENSMUST00000159081.1|Commd1|ENSMUSG00000051355.12|COMM domain containing 1
mm10_v2_chr18_+_35562158_35562174	0.0273357	AACACUG	ENSMUST00000166793.1|Matr3|ENSMUSG00000037236.8|matrin 3
mm10_v2_chrX_-_41911877_41911912	0.0273241	AACACUG	ENSMUST00000047037.8|Thoc2|ENSMUSG00000037475.9|THO complex 2
mm10_v2_chr13_-_103764502_103764505	0.0269117	AACACUG	ENSMUST00000074616.5|Srek1|ENSMUSG00000032621.7|splicing regulatory glutamine/lysine-rich protein 1
mm10_v2_chr3_-_127409044_127409064	0.0268823	AACACUG	ENSMUST00000182704.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr8_-_85432841_85432859	0.0262755	AACACUG	ENSMUST00000047749.5|4921524J17Rik|ENSMUSG00000036934.8|RIKEN cDNA 4921524J17 gene
mm10_v2_chr9_+_106170918_106170953	0.0262627	AACACUG	ENSMUST00000020490.5|Wdr82|ENSMUSG00000020257.6|WD repeat domain containing 82
mm10_v2_chr4_-_49845549_49845549	0.02625	AACACUG	ENSMUST00000093859.4|Grin3a|ENSMUSG00000039579.9|glutamate receptor ionotropic, NMDA3A 	ENSMUST00000076674.3|Grin3a|ENSMUSG00000039579.9|glutamate receptor ionotropic, NMDA3A
mm10_v2_chr17_-_31855782_31855802	0.02581	AACACUG	ENSMUST00000024839.4|Sik1|ENSMUSG00000024042.6|salt inducible kinase 1
mm10_v2_chr2_-_153241402_153241426	0.0257507	AACACUG	ENSMUST00000056924.7|Plagl2|ENSMUSG00000051413.11|pleiomorphic adenoma gene-like 2
mm10_v2_chr12_-_84218835_84218890	0.0256786	AACACUG	ENSMUST00000046266.6|Elmsan1|ENSMUSG00000042507.8|ELM2 and Myb/SANT-like domain containing 1
mm10_v2_chr12_+_78226627_78226655	0.0254596	AACACUG	ENSMUST00000110388.2|Gphn|ENSMUSG00000047454.5|gephyrin 	ENSMUST00000052472.4|Gphn|ENSMUSG00000047454.5|gephyrin
mm10_v2_chr9_-_123632545_123632565	0.0251969	AACACUG	ENSMUST00000026273.8|Slc6a20b|ENSMUSG00000025243.8|solute carrier family 6 (neurotransmitter transporter), member 20B
mm10_v2_chr3_-_141982224_141982264	0.0248561	AACACUG	ENSMUST00000029948.8|Bmpr1b|ENSMUSG00000052430.9|bone morphogenetic protein receptor, type 1B
mm10_v2_chr11_+_97362396_97362551	0.0242291	AACACUG	ENSMUST00000045540.3|Socs7|ENSMUSG00000038485.5|suppressor of cytokine signaling 7
mm10_v2_chr18_+_53862087_53862143	0.023855	AACACUG	ENSMUST00000069597.6|Csnk1g3|ENSMUSG00000073563.2|casein kinase 1, gamma 3
mm10_v2_chr8_-_104443001_104443047	0.0236458	AACACUG	ENSMUST00000041769.6|Dync1li2|ENSMUSG00000035770.7|dynein, cytoplasmic 1 light intermediate chain 2
mm10_v2_chr1_+_136131382_136131404	0.0228317	AACACUG	ENSMUST00000075164.4|Kif21b|ENSMUSG00000041642.12|kinesin family member 21B
mm10_v2_chr15_+_12117813_12117846	0.0227973	AACACUG	ENSMUST00000122941.1|Zfr|ENSMUSG00000022201.9|zinc finger RNA binding protein
mm10_v2_chr19_+_44293676_44293676	0.0215136	AACACUG	ENSMUST00000026221.5|Scd2|ENSMUSG00000025203.5|stearoyl-Coenzyme A desaturase 2
mm10_v2_chr2_-_116065798_116065853	0.0214276	AACACUG	ENSMUST00000110907.1|Meis2|ENSMUSG00000027210.14|Meis homeobox 2 	ENSMUST00000110908.2|Meis2|ENSMUSG00000027210.14|Meis homeobox 2
mm10_v2_chr4_+_47353222_47353265	0.0213899	AACACUG	ENSMUST00000007757.8|Tgfbr1|ENSMUSG00000007613.9|transforming growth factor, beta receptor I
mm10_v2_chrX_+_6577259_6577294	0.0209506	AACACUG	ENSMUST00000089520.2|Shroom4|ENSMUSG00000068270.9|shroom family member 4
mm10_v2_chr16_+_33185045_33185153	0.0207308	AACACUG	ENSMUST00000039733.8|Osbpl11|ENSMUSG00000022807.8|oxysterol binding protein-like 11
mm10_v2_chr5_+_72914264_72914304	0.0202579	AACACUG	ENSMUST00000144843.1|Slain2|ENSMUSG00000036087.12|SLAIN motif family, member 2
mm10_v2_chr14_-_61439831_61439947	0.0200332	AACACUG	ENSMUST00000022496.7|Kpna3|ENSMUSG00000021929.8|karyopherin (importin) alpha 3
mm10_v2_chr14_+_11553523_11553542	0.0198437	AACACUG	ENSMUST00000022264.6|Ptprg|ENSMUSG00000021745.7|protein tyrosine phosphatase, receptor type, G
mm10_v2_chr6_-_35539765_35539888	0.0196104	AACACUG	ENSMUST00000031866.5|Mtpn|ENSMUSG00000029840.5|myotrophin
mm10_v2_chr18_+_82910863_82910885	0.0194806	AACACUG	ENSMUST00000171238.1|Zfp516|ENSMUSG00000058881.6|zinc finger protein 516
mm10_v2_chr8_-_115707778_115707794	0.0190485	AACACUG	ENSMUST00000109104.1|Maf|ENSMUSG00000055435.6|avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog
mm10_v2_chr2_+_119547697_119547762	0.0190084	AACACUG	ENSMUST00000014221.6|Chp1|ENSMUSG00000014077.7|calcineurin-like EF hand protein 1 	ENSMUST00000119172.1|Chp1|ENSMUSG00000014077.7|calcineurin-like EF hand protein 1
mm10_v2_chr11_+_21091291_21091339	0.0188748	AACACUG	ENSMUST00000093290.5|Peli1|ENSMUSG00000020134.7|pellino 1
mm10_v2_chr16_-_92826004_92826080	0.0187829	AACACUG	ENSMUST00000023673.7|Runx1|ENSMUSG00000022952.10|runt related transcription factor 1
mm10_v2_chr12_-_83487708_83487729	0.0186039	AACACUG	ENSMUST00000177959.1|Dpf3|ENSMUSG00000021221.9|D4, zinc and double PHD fingers, family 3 	ENSMUST00000178756.1|Dpf3|ENSMUSG00000021221.9|D4, zinc and double PHD fingers, family 3
mm10_v2_chr1_+_4807823_4807928	0.018582	AACACUG	ENSMUST00000027036.4|Lypla1|ENSMUSG00000025903.8|lysophospholipase 1 	ENSMUST00000119612.2|Lypla1|ENSMUSG00000025903.8|lysophospholipase 1 	ENSMUST00000137887.1|Lypla1|ENSMUSG00000025903.8|lysophospholipase 1 	ENSMUST00000115529.1|Lypla1|ENSMUSG00000025903.8|lysophospholipase 1 	ENSMUST00000150971.1|Lypla1|ENSMUSG00000025903.8|lysophospholipase 1
mm10_v2_chr15_+_54571358_54571439	0.018391	AACACUG	ENSMUST00000025356.2|Mal2|ENSMUSG00000024479.2|mal, T cell differentiation protein 2
mm10_v2_chr2_+_71786923_71786978	0.0172066	AACACUG	ENSMUST00000112101.1|Itga6|ENSMUSG00000027111.9|integrin alpha 6 	ENSMUST00000028522.3|Itga6|ENSMUSG00000027111.9|integrin alpha 6
mm10_v2_chr12_+_70825492_70825514	0.0169607	AACACUG	ENSMUST00000057859.7|Frmd6|ENSMUSG00000048285.8|FERM domain containing 6
mm10_v2_chr16_+_91729281_91729390	0.0168844	AACACUG	ENSMUST00000114001.1|Itsn1|ENSMUSG00000022957.13|intersectin 1 (SH3 domain protein 1A) 	ENSMUST00000113999.1|Itsn1|ENSMUSG00000022957.13|intersectin 1 (SH3 domain protein 1A) 	ENSMUST00000064797.5|Itsn1|ENSMUSG00000022957.13|intersectin 1 (SH3 domain protein 1A) 	ENSMUST00000114002.2|Itsn1|ENSMUSG00000022957.13|intersectin 1 (SH3 domain protein 1A) 	ENSMUST00000095909.3|Itsn1|ENSMUSG00000022957.13|intersectin 1 (SH3 domain protein 1A) 	ENSMUST00000056482.7|Itsn1|ENSMUSG00000022957.13|intersectin 1 (SH3 domain protein 1A) 	ENSMUST00000113996.1|Itsn1|ENSMUSG00000022957.13|intersectin 1 (SH3 domain protein 1A)
mm10_v2_chr12_+_52699297_52699411	0.0160357	AACACUG	ENSMUST00000095737.3|Akap6|ENSMUSG00000061603.7|A kinase (PRKA) anchor protein 6
mm10_v2_chr5_+_86804214_86804276	0.0157128	AACACUG	ENSMUST00000119339.1|Ythdc1|ENSMUSG00000035851.8|YTH domain containing 1 	ENSMUST00000120498.1|Ythdc1|ENSMUSG00000035851.8|YTH domain containing 1
mm10_v2_chr7_-_116038734_116038750	0.0152869	AACACUG	ENSMUST00000166877.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr14_-_79771305_79771318	0.0151647	AACACUG	ENSMUST00000039568.5|Pcdh8|ENSMUSG00000036422.5|protocadherin 8
mm10_v2_chr9_+_109875541_109875591	0.0144273	AACACUG	ENSMUST00000094324.3|Cdc25a|ENSMUSG00000032477.9|cell division cycle 25A
mm10_v2_chr5_+_143464493_143464536	0.0142647	AACACUG	ENSMUST00000045593.8|Daglb|ENSMUSG00000039206.10|diacylglycerol lipase, beta
mm10_v2_chr4_+_59626189_59626253	0.0135967	AACACUG	ENSMUST00000070150.4|E130308A19Rik|ENSMUSG00000045071.7|RIKEN cDNA E130308A19 gene 	ENSMUST00000052420.6|E130308A19Rik|ENSMUSG00000045071.7|RIKEN cDNA E130308A19 gene
mm10_v2_chr13_+_81657732_81657846	0.0135722	AACACUG	ENSMUST00000049055.6|Lysmd3|ENSMUSG00000035840.6|LysM, putative peptidoglycan-binding, domain containing 3
mm10_v2_chr14_+_31251454_31251530	0.013407	AACACUG	ENSMUST00000022458.4|Bap1|ENSMUSG00000021901.4|Brca1 associated protein 1
mm10_v2_chr18_+_32163073_32163115	0.0131323	AACACUG	ENSMUST00000096575.3|Map3k2|ENSMUSG00000024383.8|mitogen-activated protein kinase kinase kinase 2
mm10_v2_chr11_+_53567361_53567526	0.0126276	AACACUG	ENSMUST00000057330.8|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A 	ENSMUST00000120613.2|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A 	ENSMUST00000173744.1|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A 	ENSMUST00000118353.2|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A
mm10_v2_chr14_+_17660956_17660963	0.0121126	AACACUG	ENSMUST00000022303.7|Thrb|ENSMUSG00000021779.10|thyroid hormone receptor beta 	ENSMUST00000091471.4|Thrb|ENSMUSG00000021779.10|thyroid hormone receptor beta
mm10_v2_chr2_-_42653598_42653598	0.0120009	AACACUG	ENSMUST00000052550.6|Lrp1b|ENSMUSG00000049252.11|low density lipoprotein-related protein 1B (deleted in tumors)
mm10_v2_chr19_-_37207293_37207508	0.0117221	AACACUG	ENSMUST00000132580.1|Cpeb3|ENSMUSG00000039652.10|cytoplasmic polyadenylation element binding protein 3 	ENSMUST00000079754.4|Cpeb3|ENSMUSG00000039652.10|cytoplasmic polyadenylation element binding protein 3 	ENSMUST00000136286.1|Cpeb3|ENSMUSG00000039652.10|cytoplasmic polyadenylation element binding protein 3 	ENSMUST00000126188.1|Cpeb3|ENSMUSG00000039652.10|cytoplasmic polyadenylation element binding protein 3 	ENSMUST00000126781.1|Cpeb3|ENSMUSG00000039652.10|cytoplasmic polyadenylation element binding protein 3
mm10_v2_chrX_-_38564519_38564555	0.0113042	AACACUG	ENSMUST00000016681.8|Cul4b|ENSMUSG00000031095.9|cullin 4B
mm10_v2_chr6_-_99266494_99266540	0.0110049	AACACUG	ENSMUST00000113326.2|Foxp1|ENSMUSG00000030067.11|forkhead box P1
mm10_v2_chr9_-_45955226_45955250	0.0108512	AACACUG	ENSMUST00000038488.9|Sidt2|ENSMUSG00000034908.9|SID1 transmembrane family, member 2
mm10_v2_chr12_+_53248677_53248677	0.0107349	AACACUG	ENSMUST00000101432.2|Npas3|ENSMUSG00000021010.7|neuronal PAS domain protein 3
mm10_v2_chrX_-_10216918_10216921	0.0106846	AACACUG	ENSMUST00000072393.2|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator 	ENSMUST00000044598.6|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator 	ENSMUST00000073392.4|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator 	ENSMUST00000115533.1|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator 	ENSMUST00000115532.1|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator
mm10_v2_chr15_-_60824942_60825080	0.0104063	AACACUG	ENSMUST00000100635.3|Fam84b|ENSMUSG00000072568.3|family with sequence similarity 84, member B
mm10_v2_chr18_+_44380479_44380554	0.00984952	AACACUG	ENSMUST00000025350.8|Dcp2|ENSMUSG00000024472.8|DCP2 decapping enzyme homolog (S. cerevisiae)
mm10_v2_chr2_-_137116624_137116644	0.00963489	AACACUG	ENSMUST00000028735.7|Jag1|ENSMUSG00000027276.7|jagged 1
mm10_v2_chr18_-_46198810_46198824	0.00955308	AACACUG	ENSMUST00000167364.1|Trim36|ENSMUSG00000033949.5|tripartite motif-containing 36
mm10_v2_chr3_-_69127098_69127113	0.00907029	AACACUG	ENSMUST00000029353.2|Kpna4|ENSMUSG00000027782.4|karyopherin (importin) alpha 4
mm10_v2_chr9_+_68653761_68653786	0.00884679	AACACUG	ENSMUST00000034766.7|Rora|ENSMUSG00000032238.11|RAR-related orphan receptor alpha
mm10_v2_chr17_+_5841307_5841377	0.00856771	AACACUG	ENSMUST00000002436.9|Snx9|ENSMUSG00000002365.9|sorting nexin 9
mm10_v2_chr9_-_48495321_48495335	0.00799479	AACACUG	ENSMUST00000170000.2|Rbm7|ENSMUSG00000042396.9|RNA binding motif protein 7
mm10_v2_chr9_+_113812547_113812621	0.00742084	AACACUG	ENSMUST00000166734.2|Clasp2|ENSMUSG00000033392.9|CLIP associating protein 2 	ENSMUST00000111838.2|Clasp2|ENSMUSG00000033392.9|CLIP associating protein 2 	ENSMUST00000163895.2|Clasp2|ENSMUSG00000033392.9|CLIP associating protein 2
mm10_v2_chr18_-_53744509_53744629	0.00724323	AACACUG	ENSMUST00000049811.6|Cep120|ENSMUSG00000048799.7|centrosomal protein 120
mm10_v2_chr11_-_82829024_82829043	0.00652221	AACACUG	ENSMUST00000021036.6|Rffl|ENSMUSG00000020696.12|ring finger and FYVE like domain containing protein 	ENSMUST00000074515.4|Rffl|ENSMUSG00000020696.12|ring finger and FYVE like domain containing protein 	ENSMUST00000103218.2|Rffl|ENSMUSG00000020696.12|ring finger and FYVE like domain containing protein
mm10_v2_chr18_+_23752333_23752401	0.00538012	AACACUG	ENSMUST00000170802.1|Mapre2|ENSMUSG00000024277.8|microtubule-associated protein, RP/EB family, member 2 	ENSMUST00000155708.1|Mapre2|ENSMUSG00000024277.8|microtubule-associated protein, RP/EB family, member 2 	ENSMUST00000118826.2|Mapre2|ENSMUSG00000024277.8|microtubule-associated protein, RP/EB family, member 2
mm10_v2_chr9_-_75409352_75409383	0.00527696	AACACUG	ENSMUST00000168937.1|Mapk6|ENSMUSG00000042688.10|mitogen-activated protein kinase 6
mm10_v2_chrX_+_13071500_13071576	0.00493206	AACACUG	ENSMUST00000089302.4|Usp9x|ENSMUSG00000031010.11|ubiquitin specific peptidase 9, X chromosome
mm10_v2_chr5_-_102069905_102069940	0.00449083	AACACUG	ENSMUST00000053177.7|Wdfy3|ENSMUSG00000043940.8|WD repeat and FYVE domain containing 3 	ENSMUST00000174698.1|Wdfy3|ENSMUSG00000043940.8|WD repeat and FYVE domain containing 3
mm10_v2_chr9_-_44881274_44881323	0.00422564	AACACUG	ENSMUST00000002095.3|Kmt2a|ENSMUSG00000002028.6|lysine (K)-specific methyltransferase 2A 	ENSMUST00000114689.1|Kmt2a|ENSMUSG00000002028.6|lysine (K)-specific methyltransferase 2A 	ENSMUST00000128768.1|Kmt2a|ENSMUSG00000002028.6|lysine (K)-specific methyltransferase 2A
mm10_v2_chr9_-_100546053_100546092	0.0039135	AACACUG	ENSMUST00000116522.1|Nck1|ENSMUSG00000032475.9|non-catalytic region of tyrosine kinase adaptor protein 1
mm10_v2_chr2_-_181459364_181459439	0.00376937	AACACUG	ENSMUST00000155535.1|Zbtb46|ENSMUSG00000027583.7|zinc finger and BTB domain containing 46 	ENSMUST00000029106.6|Zbtb46|ENSMUSG00000027583.7|zinc finger and BTB domain containing 46 	ENSMUST00000087409.3|Zbtb46|ENSMUSG00000027583.7|zinc finger and BTB domain containing 46
mm10_v2_chr2_+_172549581_172549605	0.00341092	AACACUG	ENSMUST00000030391.2|Tfap2c|ENSMUSG00000028640.5|transcription factor AP-2, gamma
mm10_v2_chr3_-_103791537_103791563	0.00333579	AACACUG	ENSMUST00000118317.1|Hipk1|ENSMUSG00000008730.11|homeodomain interacting protein kinase 1
mm10_v2_chr2_-_132145057_132145118	0.00208651	AACACUG	ENSMUST00000028815.8|Slc23a2|ENSMUSG00000027340.9|solute carrier family 23 (nucleobase transporters), member 2
mm10_v2_chr10_-_116581478_116581511	0.00161877	AACACUG	ENSMUST00000105267.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000105265.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000167706.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000168036.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000169921.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000020374.5|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2
mm10_v2_chr17_-_10319324_10319380	0.00131038	AACACUG	ENSMUST00000097414.3|Qk|ENSMUSG00000062078.8|quaking 	ENSMUST00000042296.7|Qk|ENSMUSG00000062078.8|quaking
mm10_v2_chr14_+_12284198_12284239	0.00076972	AACACUG	ENSMUST00000112669.3|3830406C13Rik|ENSMUSG00000033111.9|RIKEN cDNA 3830406C13 gene 	ENSMUST00000163392.1|3830406C13Rik|ENSMUSG00000033111.9|RIKEN cDNA 3830406C13 gene
mm10_v2_chr11_+_93996082_93996103	0.000542171	AACACUG	ENSMUST00000041956.7|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
