mm10_v2_chr5_+_36868467_36868560	3.41794	AAUACUG	ENSMUST00000031003.7|Ppp2r2c|ENSMUSG00000029120.7|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform
mm10_v2_chr9_-_22389113_22389206	3.11488	AAUACUG	ENSMUST00000040912.7|Anln|ENSMUSG00000036777.7|anillin, actin binding protein
mm10_v2_chr13_+_108316332_108316358	2.48049	AAUACUG	ENSMUST00000051594.5|Depdc1b|ENSMUSG00000021697.6|DEP domain containing 1B
mm10_v2_chr11_-_87108656_87108719	2.32226	AAUACUG	ENSMUST00000051395.8|Prr11|ENSMUSG00000020493.8|proline rich 11
mm10_v2_chr2_+_31245801_31245900	1.87268	AAUACUG	ENSMUST00000000199.7|Ncs1|ENSMUSG00000062661.6|neuronal calcium sensor 1
mm10_v2_chr4_+_17853451_17853474	1.73561	AAUACUG	ENSMUST00000029881.3|Mmp16|ENSMUSG00000028226.9|matrix metallopeptidase 16
mm10_v2_chr1_+_34801704_34801776	1.63326	AAUACUG	ENSMUST00000047664.9|Arhgef4|ENSMUSG00000037509.12|Rho guanine nucleotide exchange factor (GEF) 4
mm10_v2_chr13_-_55329723_55329776	1.58411	AAUACUG	ENSMUST00000021941.7|Mxd3|ENSMUSG00000021485.7|Max dimerization protein 3
mm10_v2_chr17_-_35838259_35838306	1.53036	AAUACUG	ENSMUST00000001566.8|Tubb5|ENSMUSG00000001525.9|tubulin, beta 5 class I
mm10_v2_chr11_-_90390895_90390926	1.51168	AAUACUG	ENSMUST00000004051.7|Hlf|ENSMUSG00000003949.10|hepatic leukemia factor
mm10_v2_chr1_+_158362261_158362304	1.38123	AAUACUG	ENSMUST00000046110.9|Astn1|ENSMUSG00000026587.9|astrotactin 1
mm10_v2_chr1_-_9700209_9700329	1.34663	AAUACUG	ENSMUST00000088658.4|Mybl1|ENSMUSG00000025912.10|myeloblastosis oncogene-like 1
mm10_v2_chr12_-_112929415_112929495	1.25091	AAUACUG	ENSMUST00000075827.3|Jag2|ENSMUSG00000002799.5|jagged 2
mm10_v2_chr9_+_72532214_72532271	1.24963	AAUACUG	ENSMUST00000163401.2|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7 	ENSMUST00000093820.3|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7
mm10_v2_chr6_+_120666388_120666424	1.24268	AAUACUG	ENSMUST00000112686.1|Cecr2|ENSMUSG00000071226.5|cat eye syndrome chromosome region, candidate 2
mm10_v2_chr13_-_40733768_40733836	1.23443	AAUACUG	ENSMUST00000110193.2|Tfap2a|ENSMUSG00000021359.9|transcription factor AP-2, alpha
mm10_v2_chr14_+_45351473_45351473	1.22799	AAUACUG	ENSMUST00000111835.2|Styx|ENSMUSG00000053205.8|serine/threonine/tyrosine interaction protein
mm10_v2_chrX_+_71555918_71556022	1.2209	AAUACUG	ENSMUST00000072699.6|Hmgb3|ENSMUSG00000015217.5|high mobility group box 3 	ENSMUST00000114582.2|Hmgb3|ENSMUSG00000015217.5|high mobility group box 3 	ENSMUST00000015361.4|Hmgb3|ENSMUSG00000015217.5|high mobility group box 3 	ENSMUST00000088874.3|Hmgb3|ENSMUSG00000015217.5|high mobility group box 3
mm10_v2_chr12_+_78861693_78861819	1.20908	AAUACUG	ENSMUST00000071230.7|Eif2s1|ENSMUSG00000021116.9|eukaryotic translation initiation factor 2, subunit 1 alpha
mm10_v2_chr12_-_98737405_98737515	1.20009	AAUACUG	ENSMUST00000170188.1|Ptpn21|ENSMUSG00000021009.8|protein tyrosine phosphatase, non-receptor type 21
mm10_v2_chr5_-_20882072_20882124	1.17865	AAUACUG	ENSMUST00000118174.1|Phtf2|ENSMUSG00000039987.9|putative homeodomain transcription factor 2
mm10_v2_chr1_+_187997821_187997834	1.15333	AAUACUG	ENSMUST00000027906.6|Esrrg|ENSMUSG00000026610.7|estrogen-related receptor gamma
mm10_v2_chr8_+_123411424_123411562	1.13684	AAUACUG	ENSMUST00000071134.3|Tubb3|ENSMUSG00000062380.3|tubulin, beta 3 class III
mm10_v2_chr8_-_31918203_31918368	1.13422	AAUACUG	ENSMUST00000073884.4|Nrg1|ENSMUSG00000062991.6|neuregulin 1
mm10_v2_chr12_-_108003594_108003613	1.07724	AAUACUG	ENSMUST00000066060.4|Bcl11b|ENSMUSG00000048251.9|B cell leukemia/lymphoma 11B
mm10_v2_chr14_+_14820765_14820815	1.07545	AAUACUG	ENSMUST00000112631.2|Nek10|ENSMUSG00000042567.13|NIMA (never in mitosis gene a)- related kinase 10 	ENSMUST00000178538.1|Nek10|ENSMUSG00000042567.13|NIMA (never in mitosis gene a)- related kinase 10 	ENSMUST00000112630.2|Nek10|ENSMUSG00000042567.13|NIMA (never in mitosis gene a)- related kinase 10
mm10_v2_chr1_-_178337774_178337797	1.05734	AAUACUG	ENSMUST00000037748.7|Hnrnpu|ENSMUSG00000039630.8|heterogeneous nuclear ribonucleoprotein U
mm10_v2_chr10_+_41810528_41810580	1.02319	AAUACUG	ENSMUST00000099931.3|Sesn1|ENSMUSG00000038332.6|sestrin 1
mm10_v2_chr14_-_31830402_31830440	1.01685	AAUACUG	ENSMUST00000014640.7|Ankrd28|ENSMUSG00000014496.7|ankyrin repeat domain 28
mm10_v2_chr2_+_65620829_65620857	1.01335	AAUACUG	ENSMUST00000028377.7|Scn2a1|ENSMUSG00000075318.6|sodium channel, voltage-gated, type II, alpha 1
mm10_v2_chr18_+_22345089_22345089	1.0126	AAUACUG	ENSMUST00000120223.1|Asxl3|ENSMUSG00000045215.10|additional sex combs like 3 (Drosophila) 	ENSMUST00000097655.3|Asxl3|ENSMUSG00000045215.10|additional sex combs like 3 (Drosophila)
mm10_v2_chr10_+_103367748_103367836	1.00568	AAUACUG	ENSMUST00000074204.4|Slc6a15|ENSMUSG00000019894.7|solute carrier family 6 (neurotransmitter transporter), member 15 	ENSMUST00000179636.1|Slc6a15|ENSMUSG00000019894.7|solute carrier family 6 (neurotransmitter transporter), member 15
mm10_v2_chr5_+_146384947_146384994	0.99935	AAUACUG	ENSMUST00000110600.1|Wasf3|ENSMUSG00000029636.7|WAS protein family, member 3 	ENSMUST00000016143.7|Wasf3|ENSMUSG00000029636.7|WAS protein family, member 3
mm10_v2_chr19_+_41482632_41482688	0.998667	AAUACUG	ENSMUST00000067795.5|Lcor|ENSMUSG00000025019.9|ligand dependent nuclear receptor corepressor
mm10_v2_chrX_+_94367147_94367183	0.978893	AAUACUG	ENSMUST00000113897.2|Apoo|ENSMUSG00000079508.2|apolipoprotein O 	ENSMUST00000113896.1|Apoo|ENSMUSG00000079508.2|apolipoprotein O 	ENSMUST00000113895.1|Apoo|ENSMUSG00000079508.2|apolipoprotein O
mm10_v2_chr4_-_91372028_91372069	0.954669	AAUACUG	ENSMUST00000107110.1|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000008633.8|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000107118.1|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chr4_-_132732514_132732558	0.949642	AAUACUG	ENSMUST00000045550.4|Xkr8|ENSMUSG00000037752.4|X Kell blood group precursor related family member 8 homolog
mm10_v2_chr18_+_10325148_10325222	0.944754	AAUACUG	ENSMUST00000048977.8|Greb1l|ENSMUSG00000042942.9|growth regulation by estrogen in breast cancer-like
mm10_v2_chr16_+_16896469_16896598	0.944731	AAUACUG	ENSMUST00000027373.9|Ppm1f|ENSMUSG00000026181.11|protein phosphatase 1F (PP2C domain containing)
mm10_v2_chr1_-_153332724_153332804	0.944326	AAUACUG	ENSMUST00000027752.8|Lamc1|ENSMUSG00000026478.8|laminin, gamma 1
mm10_v2_chr3_+_7366598_7366641	0.938343	AAUACUG	ENSMUST00000028999.6|Pkia|ENSMUSG00000027499.7|protein kinase inhibitor, alpha
mm10_v2_chr17_-_31658729_31658766	0.900895	AAUACUG	ENSMUST00000166526.1|U2af1|ENSMUSG00000061613.6|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1 	ENSMUST00000014684.4|U2af1|ENSMUSG00000061613.6|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
mm10_v2_chr17_+_27856443_27856511	0.861127	AAUACUG	ENSMUST00000114849.1|Uhrf1bp1|ENSMUSG00000039512.11|UHRF1 (ICBP90) binding protein 1
mm10_v2_chr2_-_51149100_51149115	0.858547	AAUACUG	ENSMUST00000154545.1|Rnd3|ENSMUSG00000017144.2|Rho family GTPase 3 	ENSMUST00000017288.2|Rnd3|ENSMUSG00000017144.2|Rho family GTPase 3
mm10_v2_chr6_+_71707561_71707561	0.857845	AAUACUG	ENSMUST00000121469.1|Reep1|ENSMUSG00000052852.7|receptor accessory protein 1
mm10_v2_chr12_-_5375682_5375705	0.856827	AAUACUG	ENSMUST00000020958.8|Klhl29|ENSMUSG00000020627.9|kelch-like 29
mm10_v2_chr10_-_92722356_92722420	0.814525	AAUACUG	ENSMUST00000020163.6|Nedd1|ENSMUSG00000019988.6|neural precursor cell expressed, developmentally down-regulated gene 1
mm10_v2_chr3_+_22076644_22076681	0.809484	AAUACUG	ENSMUST00000063988.8|Tbl1xr1|ENSMUSG00000027630.8|transducin (beta)-like 1X-linked receptor 1
mm10_v2_chr9_-_16378231_16378231	0.808665	AAUACUG	ENSMUST00000082170.5|Fat3|ENSMUSG00000074505.4|FAT tumor suppressor homolog 3 (Drosophila)
mm10_v2_chr13_+_54071815_54071859	0.807908	AAUACUG	ENSMUST00000021930.8|Sfxn1|ENSMUSG00000021474.8|sideroflexin 1
mm10_v2_chrX_-_56598069_56598107	0.800807	AAUACUG	ENSMUST00000059899.2|Mmgt1|ENSMUSG00000061273.3|membrane magnesium transporter 1
mm10_v2_chr3_-_144570136_144570227	0.799407	AAUACUG	ENSMUST00000043325.7|Hs2st1|ENSMUSG00000040151.8|heparan sulfate 2-O-sulfotransferase 1
mm10_v2_chr8_-_35495487_35495545	0.796093	AAUACUG	ENSMUST00000033927.6|Eri1|ENSMUSG00000031527.6|exoribonuclease 1
mm10_v2_chr19_-_41802028_41802084	0.794682	AAUACUG	ENSMUST00000026150.8|Arhgap19|ENSMUSG00000025154.8|Rho GTPase activating protein 19 	ENSMUST00000177495.1|Arhgap19|ENSMUSG00000025154.8|Rho GTPase activating protein 19 	ENSMUST00000163265.1|Arhgap19|ENSMUSG00000025154.8|Rho GTPase activating protein 19
mm10_v2_chr19_-_44407703_44407712	0.779057	AAUACUG	ENSMUST00000041331.2|Scd1|ENSMUSG00000037071.2|stearoyl-Coenzyme A desaturase 1
mm10_v2_chr14_-_98169542_98169595	0.767595	AAUACUG	ENSMUST00000069334.7|Dach1|ENSMUSG00000055639.10|dachshund 1 (Drosophila) 	ENSMUST00000071533.6|Dach1|ENSMUSG00000055639.10|dachshund 1 (Drosophila)
mm10_v2_chr3_-_53657339_53657391	0.763816	AAUACUG	ENSMUST00000091137.4|Frem2|ENSMUSG00000037016.7|Fras1 related extracellular matrix protein 2
mm10_v2_chr13_+_35659856_35659870	0.758227	AAUACUG	ENSMUST00000075220.6|Cdyl|ENSMUSG00000059288.7|chromodomain protein, Y chromosome-like
mm10_v2_chr13_-_119790805_119790805	0.752981	AAUACUG	ENSMUST00000178271.1|Zfp131|ENSMUSG00000094870.1|zinc finger protein 131 	ENSMUST00000177916.1|Zfp131|ENSMUSG00000094870.1|zinc finger protein 131
mm10_v2_chr15_-_73184840_73184971	0.732898	AAUACUG	ENSMUST00000044113.10|Ago2|ENSMUSG00000036698.10|argonaute RISC catalytic subunit 2
mm10_v2_chr2_+_178118975_178119158	0.722581	AAUACUG	ENSMUST00000108917.1|Phactr3|ENSMUSG00000027525.11|phosphatase and actin regulator 3
mm10_v2_chr2_+_181763315_181763335	0.708238	AAUACUG	ENSMUST00000081125.4|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr10_+_40883819_40883862	0.706529	AAUACUG	ENSMUST00000105509.1|Wasf1|ENSMUSG00000019831.8|WAS protein family, member 1
mm10_v2_chrX_-_103821940_103821992	0.703409	AAUACUG	ENSMUST00000042664.5|Slc16a2|ENSMUSG00000033965.6|solute carrier family 16 (monocarboxylic acid transporters), member 2
mm10_v2_chr1_-_38129618_38129679	0.697419	AAUACUG	ENSMUST00000027251.6|Rev1|ENSMUSG00000026082.6|REV1 homolog (S. cerevisiae)
mm10_v2_chr13_-_47106176_47106206	0.692208	AAUACUG	ENSMUST00000021807.6|Dek|ENSMUSG00000021377.8|DEK oncogene (DNA binding) 	ENSMUST00000135278.1|Dek|ENSMUSG00000021377.8|DEK oncogene (DNA binding)
mm10_v2_chr11_-_119547744_119547759	0.665802	AAUACUG	ENSMUST00000026670.4|Nptx1|ENSMUSG00000025582.4|neuronal pentraxin 1
mm10_v2_chr10_+_110920170_110920188	0.66471	AAUACUG	ENSMUST00000020403.5|Csrp2|ENSMUSG00000020186.6|cysteine and glycine-rich protein 2
mm10_v2_chr2_+_178414512_178414591	0.655724	AAUACUG	ENSMUST00000094251.4|Fam217b|ENSMUSG00000070476.4|family with sequence similarity 217, member B
mm10_v2_chr3_+_68468162_68468209	0.655521	AAUACUG	ENSMUST00000182532.1|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr7_+_18925863_18925899	0.653873	AAUACUG	ENSMUST00000172835.1|Nova2|ENSMUSG00000030411.9|neuro-oncological ventral antigen 2 	ENSMUST00000032571.8|Nova2|ENSMUSG00000030411.9|neuro-oncological ventral antigen 2
mm10_v2_chr13_-_100552442_100552498	0.652167	AAUACUG	ENSMUST00000159515.1|Ocln|ENSMUSG00000021638.6|occludin 	ENSMUST00000160859.1|Ocln|ENSMUSG00000021638.6|occludin 	ENSMUST00000069756.4|Ocln|ENSMUSG00000021638.6|occludin
mm10_v2_chr16_+_14705832_14705858	0.652096	AAUACUG	ENSMUST00000023356.6|Snai2|ENSMUSG00000022676.6|snail homolog 2 (Drosophila)
mm10_v2_chr11_-_118909487_118909575	0.641492	AAUACUG	ENSMUST00000117731.1|Rbfox3|ENSMUSG00000025576.11|RNA binding protein, fox-1 homolog (C. elegans) 3 	ENSMUST00000106278.2|Rbfox3|ENSMUSG00000025576.11|RNA binding protein, fox-1 homolog (C. elegans) 3 	ENSMUST00000120061.1|Rbfox3|ENSMUSG00000025576.11|RNA binding protein, fox-1 homolog (C. elegans) 3 	ENSMUST00000017576.4|Rbfox3|ENSMUSG00000025576.11|RNA binding protein, fox-1 homolog (C. elegans) 3
mm10_v2_chr15_-_64312636_64312692	0.634413	AAUACUG	ENSMUST00000177083.1|Asap1|ENSMUSG00000022377.10|ArfGAP with SH3 domain, ankyrin repeat and PH domain1 	ENSMUST00000177371.1|Asap1|ENSMUSG00000022377.10|ArfGAP with SH3 domain, ankyrin repeat and PH domain1
mm10_v2_chrX_-_111463043_111463081	0.633374	AAUACUG	ENSMUST00000065976.5|Rps6ka6|ENSMUSG00000025665.10|ribosomal protein S6 kinase polypeptide 6
mm10_v2_chr2_-_65567465_65567495	0.628047	AAUACUG	ENSMUST00000066432.5|Scn3a|ENSMUSG00000057182.8|sodium channel, voltage-gated, type III, alpha
mm10_v2_chr1_+_15712303_15712303	0.627344	AAUACUG	ENSMUST00000170146.1|Kcnb2|ENSMUSG00000090498.1|potassium voltage gated channel, Shab-related subfamily, member 2
mm10_v2_chr15_-_96699698_96699717	0.62494	AAUACUG	ENSMUST00000023099.6|Slc38a2|ENSMUSG00000022462.6|solute carrier family 38, member 2
mm10_v2_chr1_+_37997975_37998010	0.62332	AAUACUG	ENSMUST00000027252.7|Eif5b|ENSMUSG00000026083.7|eukaryotic translation initiation factor 5B
mm10_v2_chr4_-_129189512_129189594	0.619104	AAUACUG	ENSMUST00000117965.1|S100pbp|ENSMUSG00000040928.9|S100P binding protein 	ENSMUST00000106061.2|S100pbp|ENSMUSG00000040928.9|S100P binding protein 	ENSMUST00000072431.6|S100pbp|ENSMUSG00000040928.9|S100P binding protein
mm10_v2_chr12_-_30911593_30911615	0.618868	AAUACUG	ENSMUST00000062740.7|Acp1|ENSMUSG00000044573.8|acid phosphatase 1, soluble 	ENSMUST00000074038.5|Acp1|ENSMUSG00000044573.8|acid phosphatase 1, soluble
mm10_v2_chr5_-_99978914_99978966	0.610192	AAUACUG	ENSMUST00000112939.3|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000171786.1|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000072750.6|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000019128.8|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000172361.1|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D
mm10_v2_chr14_-_100149764_100149764	0.608411	AAUACUG	ENSMUST00000097079.4|Klf12|ENSMUSG00000072294.4|Kruppel-like factor 12
mm10_v2_chr11_-_49712674_49712726	0.608088	AAUACUG	ENSMUST00000020624.6|Cnot6|ENSMUSG00000020362.7|CCR4-NOT transcription complex, subunit 6 	ENSMUST00000145353.1|Cnot6|ENSMUSG00000020362.7|CCR4-NOT transcription complex, subunit 6
mm10_v2_chr12_+_40446050_40446099	0.606847	AAUACUG	ENSMUST00000037488.6|Dock4|ENSMUSG00000035954.9|dedicator of cytokinesis 4
mm10_v2_chr2_+_18677002_18677053	0.592799	AAUACUG	ENSMUST00000028071.6|Bmi1|ENSMUSG00000026739.7|Bmi1 polycomb ring finger oncogene
mm10_v2_chr13_-_46727932_46728005	0.581944	AAUACUG	ENSMUST00000021803.9|Nup153|ENSMUSG00000021374.9|nucleoporin 153
mm10_v2_chr11_-_76846968_76847045	0.568281	AAUACUG	ENSMUST00000021201.5|Cpd|ENSMUSG00000020841.5|carboxypeptidase D
mm10_v2_chr12_-_13249198_13249224	0.56586	AAUACUG	ENSMUST00000071103.8|Ddx1|ENSMUSG00000037149.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1
mm10_v2_chr1_+_66175286_66175348	0.55472	AAUACUG	ENSMUST00000114017.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2 	ENSMUST00000114015.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr18_+_69345721_69345811	0.552831	AAUACUG	ENSMUST00000078486.6|Tcf4|ENSMUSG00000053477.9|transcription factor 4 	ENSMUST00000114982.1|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr17_+_42315947_42315947	0.552467	AAUACUG	ENSMUST00000048691.4|Ptchd4|ENSMUSG00000042256.4|patched domain containing 4
mm10_v2_chr10_-_84533884_84533896	0.548078	AAUACUG	ENSMUST00000053871.3|Ckap4|ENSMUSG00000046841.4|cytoskeleton-associated protein 4
mm10_v2_chr16_+_20498817_20498866	0.540171	AAUACUG	ENSMUST00000003320.6|Eif2b5|ENSMUSG00000003235.6|eukaryotic translation initiation factor 2B, subunit 5 epsilon
mm10_v2_chr2_-_73529725_73529736	0.540102	AAUACUG	ENSMUST00000094681.4|Wipf1|ENSMUSG00000075284.4|WAS/WASL interacting protein family, member 1
mm10_v2_chr4_+_11156411_11156453	0.53433	AAUACUG	ENSMUST00000029865.3|Trp53inp1|ENSMUSG00000028211.5|transformation related protein 53 inducible nuclear protein 1
mm10_v2_chr2_+_153741274_153741294	0.533453	AAUACUG	ENSMUST00000028981.8|Mapre1|ENSMUSG00000027479.8|microtubule-associated protein, RP/EB family, member 1
mm10_v2_chr15_-_97055942_97055964	0.533141	AAUACUG	ENSMUST00000023101.3|Slc38a4|ENSMUSG00000022464.7|solute carrier family 38, member 4
mm10_v2_chr13_+_16014457_16014475	0.526518	AAUACUG	ENSMUST00000164993.1|Inhba|ENSMUSG00000041324.7|inhibin beta-A
mm10_v2_chr14_+_101729907_101729958	0.518479	AAUACUG	ENSMUST00000100337.3|Lmo7|ENSMUSG00000033060.9|LIM domain only 7
mm10_v2_chr6_-_59426279_59426345	0.516967	AAUACUG	ENSMUST00000051065.4|Gprin3|ENSMUSG00000045441.4|GPRIN family member 3
mm10_v2_chr15_+_80234071_80234146	0.516367	AAUACUG	ENSMUST00000023048.4|Mief1|ENSMUSG00000022412.6|mitochondrial elongation factor 1 	ENSMUST00000166030.1|Mief1|ENSMUSG00000022412.6|mitochondrial elongation factor 1
mm10_v2_chr11_+_94211431_94211454	0.512225	AAUACUG	ENSMUST00000041589.5|Tob1|ENSMUSG00000037573.5|transducer of ErbB-2.1
mm10_v2_chr11_+_76202007_76202030	0.51132	AAUACUG	ENSMUST00000094014.3|Fam57a|ENSMUSG00000069808.7|family with sequence similarity 57, member A
mm10_v2_chr11_-_97744659_97744774	0.508162	AAUACUG	ENSMUST00000018691.8|Pip4k2b|ENSMUSG00000018547.8|phosphatidylinositol-5-phosphate 4-kinase, type II, beta
mm10_v2_chr6_-_147264124_147264167	0.507847	AAUACUG	ENSMUST00000052296.6|Pthlh|ENSMUSG00000048776.6|parathyroid hormone-like peptide
mm10_v2_chr17_-_31855782_31855802	0.504193	AAUACUG	ENSMUST00000024839.4|Sik1|ENSMUSG00000024042.6|salt inducible kinase 1
mm10_v2_chr10_+_80755196_80755239	0.497178	AAUACUG	ENSMUST00000105336.2|Dot1l|ENSMUSG00000061589.8|DOT1-like, histone H3 methyltransferase (S. cerevisiae)
mm10_v2_chr1_+_39900883_39900963	0.492421	AAUACUG	ENSMUST00000163854.2|Map4k4|ENSMUSG00000026074.8|mitogen-activated protein kinase kinase kinase kinase 4 	ENSMUST00000168431.1|Map4k4|ENSMUSG00000026074.8|mitogen-activated protein kinase kinase kinase kinase 4
mm10_v2_chrX_-_51018011_51018032	0.490102	AAUACUG	ENSMUST00000053593.7|Rap2c|ENSMUSG00000050029.7|RAP2C, member of RAS oncogene family
mm10_v2_chr5_-_86172747_86172803	0.487181	AAUACUG	ENSMUST00000039373.7|Uba6|ENSMUSG00000035898.7|ubiquitin-like modifier activating enzyme 6
mm10_v2_chr17_+_15499888_15499960	0.47836	AAUACUG	ENSMUST00000159197.1|Tbp|ENSMUSG00000014767.10|TATA box binding protein 	ENSMUST00000162505.1|Tbp|ENSMUSG00000014767.10|TATA box binding protein 	ENSMUST00000014911.5|Tbp|ENSMUSG00000014767.10|TATA box binding protein 	ENSMUST00000147081.2|Tbp|ENSMUSG00000014767.10|TATA box binding protein 	ENSMUST00000118001.1|Tbp|ENSMUSG00000014767.10|TATA box binding protein 	ENSMUST00000143924.1|Tbp|ENSMUSG00000014767.10|TATA box binding protein 	ENSMUST00000119879.2|Tbp|ENSMUSG00000014767.10|TATA box binding protein 	ENSMUST00000155051.1|Tbp|ENSMUSG00000014767.10|TATA box binding protein 	ENSMUST00000117593.1|Tbp|ENSMUSG00000014767.10|TATA box binding protein
mm10_v2_chr3_+_88532314_88532396	0.475871	AAUACUG	ENSMUST00000172699.1|Mex3a|ENSMUSG00000074480.4|mex3 homolog A (C. elegans)
mm10_v2_chr10_-_71285234_71285262	0.471827	AAUACUG	ENSMUST00000020085.6|Ube2d1|ENSMUSG00000019927.6|ubiquitin-conjugating enzyme E2D 1
mm10_v2_chr9_-_114564315_114564369	0.470798	AAUACUG	ENSMUST00000111816.2|Trim71|ENSMUSG00000079259.2|tripartite motif-containing 71
mm10_v2_chr5_-_113908685_113908758	0.462964	AAUACUG	ENSMUST00000004646.6|Coro1c|ENSMUSG00000004530.6|coronin, actin binding protein 1C
mm10_v2_chr2_+_119897212_119897305	0.461093	AAUACUG	ENSMUST00000046717.6|Mga|ENSMUSG00000033943.9|MAX gene associated 	ENSMUST00000110774.1|Mga|ENSMUSG00000033943.9|MAX gene associated 	ENSMUST00000110773.2|Mga|ENSMUSG00000033943.9|MAX gene associated 	ENSMUST00000079934.5|Mga|ENSMUSG00000033943.9|MAX gene associated 	ENSMUST00000156510.1|Mga|ENSMUSG00000033943.9|MAX gene associated
mm10_v2_chr9_+_108692116_108692193	0.457884	AAUACUG	ENSMUST00000035220.6|Prkar2a|ENSMUSG00000032601.8|protein kinase, cAMP dependent regulatory, type II alpha
mm10_v2_chr13_+_41249841_41249863	0.455535	AAUACUG	ENSMUST00000165561.2|Smim13|ENSMUSG00000091264.2|small integral membrane protein 13
mm10_v2_chr3_+_101377074_101377158	0.447978	AAUACUG	ENSMUST00000043983.5|Igsf3|ENSMUSG00000042035.6|immunoglobulin superfamily, member 3
mm10_v2_chr3_-_51560816_51560878	0.44256	AAUACUG	ENSMUST00000037141.7|Setd7|ENSMUSG00000037111.8|SET domain containing (lysine methyltransferase) 7
mm10_v2_chr17_+_85613432_85613608	0.440057	AAUACUG	ENSMUST00000176081.1|Six3|ENSMUSG00000038805.9|sine oculis-related homeobox 3
mm10_v2_chr5_-_89883321_89883343	0.437053	AAUACUG	ENSMUST00000163159.1|Adamts3|ENSMUSG00000043635.6|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3 	ENSMUST00000061427.5|Adamts3|ENSMUSG00000043635.6|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3
mm10_v2_chr19_+_44293676_44293676	0.430863	AAUACUG	ENSMUST00000026221.5|Scd2|ENSMUSG00000025203.5|stearoyl-Coenzyme A desaturase 2
mm10_v2_chr18_-_60713389_60713389	0.42725	AAUACUG	ENSMUST00000169273.1|Ndst1|ENSMUSG00000054008.8|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
mm10_v2_chr3_-_51277470_51277514	0.426687	AAUACUG	ENSMUST00000108053.2|Elf2|ENSMUSG00000037174.12|E74-like factor 2 	ENSMUST00000108051.1|Elf2|ENSMUSG00000037174.12|E74-like factor 2
mm10_v2_chr11_-_106612928_106612973	0.417826	AAUACUG	ENSMUST00000042780.7|Tex2|ENSMUSG00000040548.9|testis expressed gene 2
mm10_v2_chr8_+_106210936_106210974	0.415658	AAUACUG	ENSMUST00000071592.5|Prmt7|ENSMUSG00000060098.5|protein arginine N-methyltransferase 7
mm10_v2_chr5_+_108065742_108065767	0.415255	AAUACUG	ENSMUST00000081567.4|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2 	ENSMUST00000170319.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2 	ENSMUST00000112626.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2
mm10_v2_chr2_+_90745370_90745469	0.414592	AAUACUG	ENSMUST00000013759.5|Fnbp4|ENSMUSG00000008200.8|formin binding protein 4
mm10_v2_chrX_+_159532674_159532748	0.409353	AAUACUG	ENSMUST00000057180.6|A830080D01Rik|ENSMUSG00000044150.6|RIKEN cDNA A830080D01 gene
mm10_v2_chr5_+_147430407_147430545	0.40491	AAUACUG	ENSMUST00000176600.1|Pan3|ENSMUSG00000029647.9|PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae)
mm10_v2_chr4_-_95052188_95052222	0.40278	AAUACUG	ENSMUST00000107094.1|Jun|ENSMUSG00000052684.3|Jun oncogene
mm10_v2_chr14_-_70351354_70351435	0.402476	AAUACUG	ENSMUST00000143153.1|Slc39a14|ENSMUSG00000022094.9|solute carrier family 39 (zinc transporter), member 14 	ENSMUST00000127000.1|Slc39a14|ENSMUSG00000022094.9|solute carrier family 39 (zinc transporter), member 14 	ENSMUST00000068044.7|Slc39a14|ENSMUSG00000022094.9|solute carrier family 39 (zinc transporter), member 14 	ENSMUST00000022688.3|Slc39a14|ENSMUSG00000022094.9|solute carrier family 39 (zinc transporter), member 14
mm10_v2_chr16_-_59555752_59555752	0.400586	AAUACUG	ENSMUST00000179383.1|Crybg3|ENSMUSG00000022723.9|beta-gamma crystallin domain containing 3 	ENSMUST00000044604.8|Crybg3|ENSMUSG00000022723.9|beta-gamma crystallin domain containing 3
mm10_v2_chr5_-_135934590_135934613	0.394121	AAUACUG	ENSMUST00000055808.5|Ywhag|ENSMUSG00000051391.8|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm10_v2_chr2_-_125859139_125859221	0.388806	AAUACUG	ENSMUST00000110463.1|Cops2|ENSMUSG00000027206.7|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana) 	ENSMUST00000028635.5|Cops2|ENSMUSG00000027206.7|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)
mm10_v2_chr11_+_80209019_80209057	0.385475	AAUACUG	ENSMUST00000077451.7|Rhot1|ENSMUSG00000017686.10|ras homolog gene family, member T1 	ENSMUST00000055056.9|Rhot1|ENSMUSG00000017686.10|ras homolog gene family, member T1
mm10_v2_chr3_+_90341654_90341654	0.379297	AAUACUG	ENSMUST00000049382.4|Gatad2b|ENSMUSG00000042390.5|GATA zinc finger domain containing 2B
mm10_v2_chr6_+_39592569_39592588	0.379174	AAUACUG	ENSMUST00000135671.1|Ndufb2|ENSMUSG00000002416.7|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2 	ENSMUST00000119379.1|Ndufb2|ENSMUSG00000002416.7|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2
mm10_v2_chr18_+_14783238_14783259	0.378565	AAUACUG	ENSMUST00000169862.1|Taf4b|ENSMUSG00000054321.6|TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr5_+_21737141_21737179	0.377041	AAUACUG	ENSMUST00000030882.5|Pmpcb|ENSMUSG00000029017.7|peptidase (mitochondrial processing) beta
mm10_v2_chr10_-_118868903_118868903	0.374673	AAUACUG	ENSMUST00000004281.8|Dyrk2|ENSMUSG00000028630.8|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
mm10_v2_chr16_-_32003122_32003287	0.37421	AAUACUG	ENSMUST00000023457.5|Senp5|ENSMUSG00000022772.5|SUMO/sentrin specific peptidase 5
mm10_v2_chr11_+_77216180_77216287	0.372494	AAUACUG	ENSMUST00000037912.5|Ssh2|ENSMUSG00000037926.9|slingshot homolog 2 (Drosophila) 	ENSMUST00000156488.1|Ssh2|ENSMUSG00000037926.9|slingshot homolog 2 (Drosophila)
mm10_v2_chr7_+_63444741_63444762	0.372422	AAUACUG	ENSMUST00000058476.7|Otud7a|ENSMUSG00000033510.8|OTU domain containing 7A
mm10_v2_chr17_-_25274299_25274317	0.370096	AAUACUG	ENSMUST00000172587.1|Ube2i|ENSMUSG00000015120.9|ubiquitin-conjugating enzyme E2I 	ENSMUST00000049911.9|Ube2i|ENSMUSG00000015120.9|ubiquitin-conjugating enzyme E2I 	ENSMUST00000173713.1|Ube2i|ENSMUSG00000015120.9|ubiquitin-conjugating enzyme E2I
mm10_v2_chr18_-_34954302_34954359	0.368552	AAUACUG	ENSMUST00000025217.8|Hspa9|ENSMUSG00000024359.8|heat shock protein 9
mm10_v2_chr2_-_136387929_136387985	0.365584	AAUACUG	ENSMUST00000035264.2|Pak7|ENSMUSG00000039913.6|p21 protein (Cdc42/Rac)-activated kinase 7 	ENSMUST00000077200.3|Pak7|ENSMUSG00000039913.6|p21 protein (Cdc42/Rac)-activated kinase 7
mm10_v2_chr18_+_5591860_5591902	0.364777	AAUACUG	ENSMUST00000025081.5|Zeb1|ENSMUSG00000024238.7|zinc finger E-box binding homeobox 1 	ENSMUST00000159390.1|Zeb1|ENSMUSG00000024238.7|zinc finger E-box binding homeobox 1
mm10_v2_chr18_+_34777008_34777075	0.362295	AAUACUG	ENSMUST00000043775.7|Kdm3b|ENSMUSG00000038773.10|KDM3B lysine (K)-specific demethylase 3B
mm10_v2_chr2_+_119675062_119675095	0.358183	AAUACUG	ENSMUST00000028767.8|Rtf1|ENSMUSG00000027304.9|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm10_v2_chr6_+_8948608_8948619	0.357531	AAUACUG	ENSMUST00000160300.1|Nxph1|ENSMUSG00000046178.3|neurexophilin 1
mm10_v2_chr11_+_77686155_77686179	0.355752	AAUACUG	ENSMUST00000100802.4|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2 	ENSMUST00000181023.1|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2
mm10_v2_chr15_+_40655020_40655054	0.355547	AAUACUG	ENSMUST00000053467.4|Zfpm2|ENSMUSG00000022306.8|zinc finger protein, multitype 2
mm10_v2_chr9_-_32541589_32541602	0.35145	AAUACUG	ENSMUST00000016231.7|Fli1|ENSMUSG00000016087.7|Friend leukemia integration 1
mm10_v2_chr16_+_4594683_4594735	0.350502	AAUACUG	ENSMUST00000014447.6|Glis2|ENSMUSG00000014303.7|GLIS family zinc finger 2
mm10_v2_chr16_-_76373827_76373852	0.348441	AAUACUG	ENSMUST00000121927.1|Nrip1|ENSMUSG00000048490.7|nuclear receptor interacting protein 1
mm10_v2_chr10_-_91082653_91082662	0.345934	AAUACUG	ENSMUST00000159110.1|Apaf1|ENSMUSG00000019979.6|apoptotic peptidase activating factor 1
mm10_v2_chr6_-_119417479_119417530	0.339155	AAUACUG	ENSMUST00000032272.6|Adipor2|ENSMUSG00000030168.7|adiponectin receptor 2
mm10_v2_chr2_+_163994960_163994960	0.338978	AAUACUG	ENSMUST00000018470.3|Ywhab|ENSMUSG00000018326.3|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm10_v2_chr5_+_65763518_65763541	0.336373	AAUACUG	ENSMUST00000113738.1|N4bp2|ENSMUSG00000037795.8|NEDD4 binding protein 2
mm10_v2_chr9_+_78113275_78113346	0.335696	AAUACUG	ENSMUST00000009972.5|Ick|ENSMUSG00000009828.9|intestinal cell kinase 	ENSMUST00000117330.1|Ick|ENSMUSG00000009828.9|intestinal cell kinase 	ENSMUST00000044551.7|Ick|ENSMUSG00000009828.9|intestinal cell kinase
mm10_v2_chr11_-_86544754_86544805	0.335163	AAUACUG	ENSMUST00000138810.1|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1 	ENSMUST00000058286.2|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1 	ENSMUST00000154617.1|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1
mm10_v2_chr16_+_57121705_57121761	0.33096	AAUACUG	ENSMUST00000166897.1|Tomm70a|ENSMUSG00000022752.8|translocase of outer mitochondrial membrane 70 homolog A (yeast)
mm10_v2_chr9_+_14276301_14276347	0.325309	AAUACUG	ENSMUST00000034507.7|Sesn3|ENSMUSG00000032009.7|sestrin 3
mm10_v2_chr10_+_128377086_128377155	0.323578	AAUACUG	ENSMUST00000014642.3|Ankrd52|ENSMUSG00000014498.3|ankyrin repeat domain 52
mm10_v2_chr4_-_34882919_34882964	0.320475	AAUACUG	ENSMUST00000098163.2|Zfp292|ENSMUSG00000039967.8|zinc finger protein 292 	ENSMUST00000047950.5|Zfp292|ENSMUSG00000039967.8|zinc finger protein 292
mm10_v2_chr6_+_108213086_108213123	0.319023	AAUACUG	ENSMUST00000032192.6|Itpr1|ENSMUSG00000030102.8|inositol 1,4,5-trisphosphate receptor 1
mm10_v2_chr7_-_133015248_133015329	0.314093	AAUACUG	ENSMUST00000169570.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr8_+_88199194_88199224	0.308647	AAUACUG	ENSMUST00000119033.1|Papd5|ENSMUSG00000036779.6|PAP associated domain containing 5 	ENSMUST00000066748.3|Papd5|ENSMUSG00000036779.6|PAP associated domain containing 5 	ENSMUST00000118952.1|Papd5|ENSMUSG00000036779.6|PAP associated domain containing 5
mm10_v2_chr5_-_123684289_123684379	0.302096	AAUACUG	ENSMUST00000111564.1|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1 	ENSMUST00000063905.5|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1
mm10_v2_chr15_+_39198244_39198363	0.300469	AAUACUG	ENSMUST00000082054.5|Rims2|ENSMUSG00000037386.9|regulating synaptic membrane exocytosis 2 	ENSMUST00000042917.9|Rims2|ENSMUSG00000037386.9|regulating synaptic membrane exocytosis 2
mm10_v2_chr11_+_79993062_79993122	0.299934	AAUACUG	ENSMUST00000017692.8|Suz12|ENSMUSG00000017548.9|suppressor of zeste 12 homolog (Drosophila) 	ENSMUST00000163272.1|Suz12|ENSMUSG00000017548.9|suppressor of zeste 12 homolog (Drosophila)
mm10_v2_chr5_-_25498702_25498745	0.296525	AAUACUG	ENSMUST00000173073.1|Kmt2c|ENSMUSG00000038056.9|lysine (K)-specific methyltransferase 2C 	ENSMUST00000045291.7|Kmt2c|ENSMUSG00000038056.9|lysine (K)-specific methyltransferase 2C
mm10_v2_chr1_+_64690443_64690467	0.293569	AAUACUG	ENSMUST00000114077.1|Ccnyl1|ENSMUSG00000070871.4|cyclin Y-like 1
mm10_v2_chr4_-_154097105_154097173	0.288584	AAUACUG	ENSMUST00000105643.1|Trp73|ENSMUSG00000029026.10|transformation related protein 73 	ENSMUST00000133533.1|Trp73|ENSMUSG00000029026.10|transformation related protein 73 	ENSMUST00000097762.4|Trp73|ENSMUSG00000029026.10|transformation related protein 73
mm10_v2_chrX_-_152368680_152368740	0.287151	AAUACUG	ENSMUST00000070316.5|Gpr173|ENSMUSG00000056679.7|G-protein coupled receptor 173
mm10_v2_chr14_+_120911177_120911198	0.284559	AAUACUG	ENSMUST00000032898.7|Ipo5|ENSMUSG00000030662.9|importin 5
mm10_v2_chr12_-_54862783_54862921	0.282861	AAUACUG	ENSMUST00000078124.7|Cfl2|ENSMUSG00000062929.7|cofilin 2, muscle
mm10_v2_chr2_+_102658640_102658669	0.279014	AAUACUG	ENSMUST00000080210.3|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm10_v2_chr17_+_34894515_34894573	0.277853	AAUACUG	ENSMUST00000052778.8|Zbtb12|ENSMUSG00000049823.8|zinc finger and BTB domain containing 12
mm10_v2_chr9_+_51765325_51765364	0.273523	AAUACUG	ENSMUST00000065496.5|Arhgap20|ENSMUSG00000053199.7|Rho GTPase activating protein 20
mm10_v2_chr19_+_29522263_29522341	0.272598	AAUACUG	ENSMUST00000043610.6|C030046E11Rik|ENSMUSG00000038658.9|RIKEN cDNA C030046E11 gene 	ENSMUST00000162184.1|C030046E11Rik|ENSMUSG00000038658.9|RIKEN cDNA C030046E11 gene
mm10_v2_chr7_+_120677579_120677630	0.272185	AAUACUG	ENSMUST00000060175.6|BC030336|ENSMUSG00000046096.6|cDNA sequence BC030336
mm10_v2_chr16_+_84835070_84835124	0.269898	AAUACUG	ENSMUST00000009120.7|Gabpa|ENSMUSG00000008976.10|GA repeat binding protein, alpha
mm10_v2_chr10_+_39369750_39369804	0.267746	AAUACUG	ENSMUST00000063091.6|Fyn|ENSMUSG00000019843.8|Fyn proto-oncogene 	ENSMUST00000099967.3|Fyn|ENSMUSG00000019843.8|Fyn proto-oncogene 	ENSMUST00000126486.1|Fyn|ENSMUSG00000019843.8|Fyn proto-oncogene
mm10_v2_chr3_+_103279293_103279293	0.267232	AAUACUG	ENSMUST00000029444.6|Trim33|ENSMUSG00000033014.6|tripartite motif-containing 33 	ENSMUST00000106860.1|Trim33|ENSMUSG00000033014.6|tripartite motif-containing 33
mm10_v2_chr2_+_124610573_124610613	0.265253	AAUACUG	ENSMUST00000103239.3|Sema6d|ENSMUSG00000027200.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D 	ENSMUST00000103240.2|Sema6d|ENSMUSG00000027200.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm10_v2_chr10_-_37138863_37138937	0.264467	AAUACUG	ENSMUST00000092584.5|Marcks|ENSMUSG00000069662.5|myristoylated alanine rich protein kinase C substrate
mm10_v2_chr18_-_78123324_78123426	0.262931	AAUACUG	ENSMUST00000160292.1|Slc14a1|ENSMUSG00000059336.8|solute carrier family 14 (urea transporter), member 1 	ENSMUST00000091813.5|Slc14a1|ENSMUSG00000059336.8|solute carrier family 14 (urea transporter), member 1
mm10_v2_chr17_+_88440711_88440741	0.261176	AAUACUG	ENSMUST00000112238.2|Foxn2|ENSMUSG00000034998.12|forkhead box N2 	ENSMUST00000155640.1|Foxn2|ENSMUSG00000034998.12|forkhead box N2
mm10_v2_chr1_-_152766281_152766319	0.258944	AAUACUG	ENSMUST00000111859.1|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1 	ENSMUST00000148865.1|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1
mm10_v2_chr9_+_65908967_65909020	0.25836	AAUACUG	ENSMUST00000034949.3|Csnk1g1|ENSMUSG00000032384.9|casein kinase 1, gamma 1 	ENSMUST00000154589.1|Csnk1g1|ENSMUSG00000032384.9|casein kinase 1, gamma 1
mm10_v2_chr14_+_70077375_70077445	0.255102	AAUACUG	ENSMUST00000035908.1|Egr3|ENSMUSG00000033730.3|early growth response 3
mm10_v2_chr9_-_67559703_67559703	0.254093	AAUACUG	ENSMUST00000040025.7|Tln2|ENSMUSG00000052698.8|talin 2
mm10_v2_chr6_+_65042575_65042667	0.25382	AAUACUG	ENSMUST00000031984.6|Smarcad1|ENSMUSG00000029920.7|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
mm10_v2_chr1_-_106714217_106714330	0.249974	AAUACUG	ENSMUST00000112751.1|Bcl2|ENSMUSG00000057329.6|B cell leukemia/lymphoma 2
mm10_v2_chr3_+_94974728_94974753	0.249691	AAUACUG	ENSMUST00000072287.5|Pi4kb|ENSMUSG00000038861.8|phosphatidylinositol 4-kinase, catalytic, beta polypeptide
mm10_v2_chr2_+_121955964_121956001	0.248759	AAUACUG	ENSMUST00000036647.6|Ctdspl2|ENSMUSG00000033411.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm10_v2_chr1_-_162740350_162740533	0.248115	AAUACUG	ENSMUST00000182331.1|Prrc2c|ENSMUSG00000040225.9|proline-rich coiled-coil 2C 	ENSMUST00000183011.1|Prrc2c|ENSMUSG00000040225.9|proline-rich coiled-coil 2C 	ENSMUST00000182593.1|Prrc2c|ENSMUSG00000040225.9|proline-rich coiled-coil 2C 	ENSMUST00000182149.1|Prrc2c|ENSMUSG00000040225.9|proline-rich coiled-coil 2C
mm10_v2_chr5_+_150673739_150673827	0.247633	AAUACUG	ENSMUST00000016569.4|Pds5b|ENSMUSG00000034021.9|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae) 	ENSMUST00000038900.8|Pds5b|ENSMUSG00000034021.9|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
mm10_v2_chr1_+_90603425_90603511	0.246823	AAUACUG	ENSMUST00000036153.5|Cops8|ENSMUSG00000034432.5|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)
mm10_v2_chrX_-_104413825_104413856	0.24655	AAUACUG	ENSMUST00000033695.5|Abcb7|ENSMUSG00000031333.7|ATP-binding cassette, sub-family B (MDR/TAP), member 7
mm10_v2_chr7_+_82867327_82867357	0.240956	AAUACUG	ENSMUST00000082237.5|Mex3b|ENSMUSG00000057706.6|mex3 homolog B (C. elegans)
mm10_v2_chr11_-_22982090_22982382	0.240906	AAUACUG	ENSMUST00000160826.1|RP23-242C19.7|ENSMUSG00000098650.1|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 (B3gnt2), transcript variant 2, mRNA 	ENSMUST00000093270.5|Commd1|ENSMUSG00000051355.12|COMM domain containing 1 	ENSMUST00000071068.8|Commd1|ENSMUSG00000051355.12|COMM domain containing 1 	ENSMUST00000159081.1|Commd1|ENSMUSG00000051355.12|COMM domain containing 1
mm10_v2_chr1_-_46854046_46854079	0.239327	AAUACUG	ENSMUST00000027131.4|Slc39a10|ENSMUSG00000025986.5|solute carrier family 39 (zinc transporter), member 10
mm10_v2_chr9_+_47530173_47530373	0.237622	AAUACUG	ENSMUST00000114548.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000152459.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000143026.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000085909.2|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000114547.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000034581.3|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1
mm10_v2_chr1_-_16619437_16619489	0.235063	AAUACUG	ENSMUST00000117146.1|Ube2w|ENSMUSG00000025939.11|ubiquitin-conjugating enzyme E2W (putative)
mm10_v2_chr16_+_44139821_44139900	0.234848	AAUACUG	ENSMUST00000159514.1|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000161326.1|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000063520.8|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000063542.7|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit
mm10_v2_chr5_-_142608785_142608808	0.234834	AAUACUG	ENSMUST00000037048.7|Mmd2|ENSMUSG00000039533.7|monocyte to macrophage differentiation-associated 2
mm10_v2_chr12_-_111713185_111713257	0.229531	AAUACUG	ENSMUST00000054636.6|Bag5|ENSMUSG00000049792.6|BCL2-associated athanogene 5
mm10_v2_chr4_-_83486453_83486478	0.22951	AAUACUG	ENSMUST00000107214.2|Psip1|ENSMUSG00000028484.10|PC4 and SFRS1 interacting protein 1 	ENSMUST00000107215.2|Psip1|ENSMUSG00000028484.10|PC4 and SFRS1 interacting protein 1 	ENSMUST00000030207.8|Psip1|ENSMUSG00000028484.10|PC4 and SFRS1 interacting protein 1
mm10_v2_chr2_+_3713449_3713474	0.229083	AAUACUG	ENSMUST00000027965.4|Fam107b|ENSMUSG00000026655.8|family with sequence similarity 107, member B
mm10_v2_chr6_-_38876163_38876234	0.228694	AAUACUG	ENSMUST00000161779.1|Hipk2|ENSMUSG00000061436.9|homeodomain interacting protein kinase 2
mm10_v2_chr2_+_122028544_122028563	0.228318	AAUACUG	ENSMUST00000028668.7|Eif3j1|ENSMUSG00000027236.8|eukaryotic translation initiation factor 3, subunit J1
mm10_v2_chr7_-_116038734_116038750	0.227399	AAUACUG	ENSMUST00000166877.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr12_-_32061221_32061301	0.227187	AAUACUG	ENSMUST00000003079.5|Prkar2b|ENSMUSG00000002997.9|protein kinase, cAMP dependent regulatory, type II beta 	ENSMUST00000036497.9|Prkar2b|ENSMUSG00000002997.9|protein kinase, cAMP dependent regulatory, type II beta
mm10_v2_chrX_+_68678541_68678554	0.22446	AAUACUG	ENSMUST00000088546.5|Fmr1|ENSMUSG00000000838.11|fragile X mental retardation syndrome 1
mm10_v2_chr6_-_143947092_143947111	0.22345	AAUACUG	ENSMUST00000144289.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5 	ENSMUST00000111748.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr5_+_142401484_142401532	0.221587	AAUACUG	ENSMUST00000072837.5|Foxk1|ENSMUSG00000056493.8|forkhead box K1
mm10_v2_chr4_-_16163611_16163647	0.221003	AAUACUG	ENSMUST00000037035.5|Ripk2|ENSMUSG00000041135.9|receptor (TNFRSF)-interacting serine-threonine kinase 2
mm10_v2_chr11_+_88047693_88047727	0.219908	AAUACUG	ENSMUST00000079866.4|Srsf1|ENSMUSG00000018379.11|serine/arginine-rich splicing factor 1
mm10_v2_chr18_-_39490649_39490717	0.217045	AAUACUG	ENSMUST00000115567.1|Nr3c1|ENSMUSG00000024431.8|nuclear receptor subfamily 3, group C, member 1
mm10_v2_chr9_+_106170918_106170953	0.216024	AAUACUG	ENSMUST00000020490.5|Wdr82|ENSMUSG00000020257.6|WD repeat domain containing 82
mm10_v2_chr15_-_89315253_89315312	0.213377	AAUACUG	ENSMUST00000144585.2|Sbf1|ENSMUSG00000036529.11|SET binding factor 1 	ENSMUST00000123791.1|Sbf1|ENSMUSG00000036529.11|SET binding factor 1
mm10_v2_chr9_-_99140065_99140087	0.213278	AAUACUG	ENSMUST00000035037.7|Pik3cb|ENSMUSG00000032462.8|phosphatidylinositol 3-kinase, catalytic, beta polypeptide
mm10_v2_chr6_+_56714891_56714951	0.210122	AAUACUG	ENSMUST00000031805.8|Avl9|ENSMUSG00000029787.8|AVL9 homolog (S. cerevisiase)
mm10_v2_chr1_+_16105774_16105870	0.209101	AAUACUG	ENSMUST00000027053.7|Rdh10|ENSMUSG00000025921.7|retinol dehydrogenase 10 (all-trans)
mm10_v2_chr5_+_123076275_123076354	0.207606	AAUACUG	ENSMUST00000067505.8|Tmem120b|ENSMUSG00000054434.8|transmembrane protein 120B 	ENSMUST00000111619.3|Tmem120b|ENSMUSG00000054434.8|transmembrane protein 120B 	ENSMUST00000160344.1|Tmem120b|ENSMUSG00000054434.8|transmembrane protein 120B
mm10_v2_chr7_+_59228743_59228769	0.207531	AAUACUG	ENSMUST00000107537.1|Ube3a|ENSMUSG00000025326.8|ubiquitin protein ligase E3A
mm10_v2_chr3_-_50443603_50443615	0.202951	AAUACUG	ENSMUST00000029297.4|Slc7a11|ENSMUSG00000027737.5|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
mm10_v2_chr9_+_72806874_72806874	0.20258	AAUACUG	ENSMUST00000055535.8|Prtg|ENSMUSG00000036030.9|protogenin homolog (Gallus gallus)
mm10_v2_chrX_+_52912232_52912361	0.20215	AAUACUG	ENSMUST00000078944.6|Phf6|ENSMUSG00000025626.10|PHD finger protein 6 	ENSMUST00000101587.3|Phf6|ENSMUSG00000025626.10|PHD finger protein 6 	ENSMUST00000154864.2|Phf6|ENSMUSG00000025626.10|PHD finger protein 6
mm10_v2_chr3_+_32436151_32436151	0.201938	AAUACUG	ENSMUST00000029201.7|Pik3ca|ENSMUSG00000027665.7|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm10_v2_chr1_+_64532790_64532815	0.201846	AAUACUG	ENSMUST00000049932.5|Creb1|ENSMUSG00000025958.8|cAMP responsive element binding protein 1 	ENSMUST00000087366.4|Creb1|ENSMUSG00000025958.8|cAMP responsive element binding protein 1 	ENSMUST00000171164.1|Creb1|ENSMUSG00000025958.8|cAMP responsive element binding protein 1
mm10_v2_chr6_-_53068562_53068656	0.200792	AAUACUG	ENSMUST00000074541.5|Jazf1|ENSMUSG00000063568.5|JAZF zinc finger 1
mm10_v2_chr19_+_60755947_60755987	0.198602	AAUACUG	ENSMUST00000088237.4|Nanos1|ENSMUSG00000072437.3|nanos homolog 1 (Drosophila)
mm10_v2_chr2_-_52424826_52424916	0.198424	AAUACUG	ENSMUST00000036541.7|Arl5a|ENSMUSG00000036093.7|ADP-ribosylation factor-like 5A
mm10_v2_chr4_-_56947411_56947447	0.197841	AAUACUG	ENSMUST00000107609.3|Tmem245|ENSMUSG00000055296.8|transmembrane protein 245 	ENSMUST00000068792.6|Tmem245|ENSMUSG00000055296.8|transmembrane protein 245
mm10_v2_chr2_-_152398046_152398076	0.195662	AAUACUG	ENSMUST00000063332.8|Sox12|ENSMUSG00000051817.8|SRY-box containing gene 12 	ENSMUST00000182625.1|Sox12|ENSMUSG00000051817.8|SRY-box containing gene 12
mm10_v2_chr4_+_57434247_57434368	0.192795	AAUACUG	ENSMUST00000102905.1|Palm2|ENSMUSG00000090053.3|paralemmin 2
mm10_v2_chr11_-_87086752_87086781	0.19246	AAUACUG	ENSMUST00000020801.7|Smg8|ENSMUSG00000020495.7|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)
mm10_v2_chr11_-_107131922_107131954	0.191112	AAUACUG	ENSMUST00000057892.8|Bptf|ENSMUSG00000040481.10|bromodomain PHD finger transcription factor
mm10_v2_chr17_-_34603675_34603702	0.188324	AAUACUG	ENSMUST00000015622.7|Rnf5|ENSMUSG00000015478.7|ring finger protein 5
mm10_v2_chr8_+_84969587_84969636	0.187045	AAUACUG	ENSMUST00000109734.1|Prdx2|ENSMUSG00000005161.9|peroxiredoxin 2 	ENSMUST00000005292.8|Prdx2|ENSMUSG00000005161.9|peroxiredoxin 2
mm10_v2_chr2_-_66410064_66410134	0.186768	AAUACUG	ENSMUST00000112366.1|Scn1a|ENSMUSG00000064329.7|sodium channel, voltage-gated, type I, alpha
mm10_v2_chr13_+_75707484_75707510	0.185163	AAUACUG	ENSMUST00000001583.6|Ell2|ENSMUSG00000001542.6|elongation factor RNA polymerase II 2
mm10_v2_chr10_-_94944578_94944578	0.183131	AAUACUG	ENSMUST00000099337.3|Plxnc1|ENSMUSG00000074785.4|plexin C1
mm10_v2_chr7_+_112679314_112679325	0.182726	AAUACUG	ENSMUST00000084705.5|Tead1|ENSMUSG00000055320.10|TEA domain family member 1 	ENSMUST00000059768.10|Tead1|ENSMUSG00000055320.10|TEA domain family member 1
mm10_v2_chr5_+_88886809_88886825	0.179281	AAUACUG	ENSMUST00000148750.1|Slc4a4|ENSMUSG00000060961.8|solute carrier family 4 (anion exchanger), member 4
mm10_v2_chr6_-_99266494_99266540	0.179041	AAUACUG	ENSMUST00000113326.2|Foxp1|ENSMUSG00000030067.11|forkhead box P1
mm10_v2_chr16_+_42907563_42907684	0.175009	AAUACUG	ENSMUST00000151244.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000114694.2|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr17_-_46556158_46556188	0.174277	AAUACUG	ENSMUST00000015749.5|Srf|ENSMUSG00000015605.5|serum response factor
mm10_v2_chr8_-_102785093_102785114	0.172492	AAUACUG	ENSMUST00000075190.3|Cdh11|ENSMUSG00000031673.5|cadherin 11
mm10_v2_chr10_-_40883073_40883143	0.170986	AAUACUG	ENSMUST00000044166.7|Cdc40|ENSMUSG00000038446.7|cell division cycle 40
mm10_v2_chr6_-_32588192_32588213	0.169877	AAUACUG	ENSMUST00000115096.2|Plxna4|ENSMUSG00000029765.10|plexin A4
mm10_v2_chr9_-_107710475_107710475	0.169365	AAUACUG	ENSMUST00000080560.3|Sema3f|ENSMUSG00000034684.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
mm10_v2_chr3_+_54693088_54693105	0.167571	AAUACUG	ENSMUST00000170552.1|Supt20|ENSMUSG00000027751.9|suppressor of Ty 20
mm10_v2_chr18_-_20746402_20746422	0.164828	AAUACUG	ENSMUST00000070080.5|B4galt6|ENSMUSG00000056124.5|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6
mm10_v2_chr1_-_155417283_155417323	0.164465	AAUACUG	ENSMUST00000027741.5|Xpr1|ENSMUSG00000026469.8|xenotropic and polytropic retrovirus receptor 1
mm10_v2_chr12_+_33429605_33429649	0.164435	AAUACUG	ENSMUST00000020877.7|Twistnb|ENSMUSG00000020561.7|TWIST neighbor
mm10_v2_chrX_-_105929397_105929408	0.161576	AAUACUG	ENSMUST00000113573.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human) 	ENSMUST00000130980.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm10_v2_chr14_-_79771305_79771318	0.160724	AAUACUG	ENSMUST00000039568.5|Pcdh8|ENSMUSG00000036422.5|protocadherin 8
mm10_v2_chrX_+_159255782_159255899	0.160112	AAUACUG	ENSMUST00000126686.1|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3 	ENSMUST00000033671.6|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3
mm10_v2_chrX_+_9885622_9885622	0.159608	AAUACUG	ENSMUST00000067529.2|Sytl5|ENSMUSG00000054453.5|synaptotagmin-like 5 	ENSMUST00000086165.3|Sytl5|ENSMUSG00000054453.5|synaptotagmin-like 5
mm10_v2_chr9_-_75559604_75559665	0.158374	AAUACUG	ENSMUST00000072232.7|Tmod3|ENSMUSG00000058587.7|tropomodulin 3
mm10_v2_chr5_+_103425181_103425197	0.156935	AAUACUG	ENSMUST00000048957.9|Ptpn13|ENSMUSG00000034573.10|protein tyrosine phosphatase, non-receptor type 13
mm10_v2_chr10_-_80387642_80387666	0.156439	AAUACUG	ENSMUST00000062946.6|Mex3d|ENSMUSG00000048696.10|mex3 homolog D (C. elegans) 	ENSMUST00000105350.1|Mex3d|ENSMUSG00000048696.10|mex3 homolog D (C. elegans)
mm10_v2_chr1_-_9748376_9748451	0.154488	AAUACUG	ENSMUST00000057438.6|Vcpip1|ENSMUSG00000045210.8|valosin containing protein (p97)/p47 complex interacting protein 1
mm10_v2_chr5_-_114773488_114773517	0.153764	AAUACUG	ENSMUST00000178440.1|Git2|ENSMUSG00000041890.11|G protein-coupled receptor kinase-interactor 2 	ENSMUST00000043283.7|Git2|ENSMUSG00000041890.11|G protein-coupled receptor kinase-interactor 2 	ENSMUST00000112185.2|Git2|ENSMUSG00000041890.11|G protein-coupled receptor kinase-interactor 2
mm10_v2_chr7_-_63938862_63938933	0.151745	AAUACUG	ENSMUST00000063694.8|Klf13|ENSMUSG00000052040.9|Kruppel-like factor 13
mm10_v2_chr4_-_132212255_132212303	0.151388	AAUACUG	ENSMUST00000152796.1|Ythdf2|ENSMUSG00000040025.11|YTH domain family 2
mm10_v2_chr1_+_165301863_165301863	0.150913	AAUACUG	ENSMUST00000178700.1|Gpr161|ENSMUSG00000040836.9|G protein-coupled receptor 161
mm10_v2_chr2_-_42653598_42653598	0.14856	AAUACUG	ENSMUST00000052550.6|Lrp1b|ENSMUSG00000049252.11|low density lipoprotein-related protein 1B (deleted in tumors)
mm10_v2_chr16_+_21891969_21891969	0.147897	AAUACUG	ENSMUST00000042065.6|Map3k13|ENSMUSG00000033618.6|mitogen-activated protein kinase kinase kinase 13
mm10_v2_chrX_+_151046131_151046150	0.14614	AAUACUG	ENSMUST00000112685.1|Fgd1|ENSMUSG00000025265.8|FYVE, RhoGEF and PH domain containing 1
mm10_v2_chrX_+_13280970_13281031	0.142387	AAUACUG	ENSMUST00000000804.6|Ddx3x|ENSMUSG00000000787.6|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked
mm10_v2_chr9_+_40269430_40269441	0.139768	AAUACUG	ENSMUST00000171835.2|Scn3b|ENSMUSG00000049281.9|sodium channel, voltage-gated, type III, beta
mm10_v2_chr15_-_77307043_77307058	0.137133	AAUACUG	ENSMUST00000048145.5|Rbfox2|ENSMUSG00000033565.10|RNA binding protein, fox-1 homolog (C. elegans) 2 	ENSMUST00000171751.1|Rbfox2|ENSMUSG00000033565.10|RNA binding protein, fox-1 homolog (C. elegans) 2
mm10_v2_chr2_+_31572701_31572725	0.135383	AAUACUG	ENSMUST00000055244.6|Fubp3|ENSMUSG00000026843.9|far upstream element (FUSE) binding protein 3
mm10_v2_chr12_+_49382791_49382883	0.135	AAUACUG	ENSMUST00000179669.1|Foxg1|ENSMUSG00000020950.9|forkhead box G1
mm10_v2_chr6_+_100833606_100833663	0.134104	AAUACUG	ENSMUST00000063854.4|Ppp4r2|ENSMUSG00000052144.6|protein phosphatase 4, regulatory subunit 2
mm10_v2_chr6_-_148831448_148831494	0.131537	AAUACUG	ENSMUST00000048418.7|Ipo8|ENSMUSG00000040029.8|importin 8
mm10_v2_chr5_-_99252839_99252927	0.130862	AAUACUG	ENSMUST00000168092.1|Rasgef1b|ENSMUSG00000029333.8|RasGEF domain family, member 1B 	ENSMUST00000031276.8|Rasgef1b|ENSMUSG00000029333.8|RasGEF domain family, member 1B
mm10_v2_chr16_+_8513429_8513497	0.130663	AAUACUG	ENSMUST00000065987.7|Abat|ENSMUSG00000057880.6|4-aminobutyrate aminotransferase 	ENSMUST00000115838.1|Abat|ENSMUSG00000057880.6|4-aminobutyrate aminotransferase 	ENSMUST00000115839.2|Abat|ENSMUSG00000057880.6|4-aminobutyrate aminotransferase
mm10_v2_chr2_+_15055274_15055379	0.129334	AAUACUG	ENSMUST00000069870.3|Arl5b|ENSMUSG00000017418.7|ADP-ribosylation factor-like 5B
mm10_v2_chrX_-_169320273_169320383	0.127227	AAUACUG	ENSMUST00000033717.2|Hccs|ENSMUSG00000031352.4|holocytochrome c synthetase 	ENSMUST00000112115.1|Hccs|ENSMUSG00000031352.4|holocytochrome c synthetase
mm10_v2_chr16_+_77014069_77014069	0.126587	AAUACUG	ENSMUST00000023580.6|Usp25|ENSMUSG00000022867.9|ubiquitin specific peptidase 25
mm10_v2_chr6_-_97617536_97617597	0.125974	AAUACUG	ENSMUST00000113355.2|Frmd4b|ENSMUSG00000030064.10|FERM domain containing 4B
mm10_v2_chr16_-_22265950_22266005	0.125721	AAUACUG	ENSMUST00000161286.1|Tra2b|ENSMUSG00000022858.9|transformer 2 beta homolog (Drosophila)
mm10_v2_chrX_-_165327376_165327421	0.125619	AAUACUG	ENSMUST00000058787.8|Glra2|ENSMUSG00000018589.8|glycine receptor, alpha 2 subunit
mm10_v2_chr2_-_148732457_148732467	0.125509	AAUACUG	ENSMUST00000028926.6|Napb|ENSMUSG00000027438.8|N-ethylmaleimide sensitive fusion protein attachment protein beta
mm10_v2_chr14_-_121797670_121797753	0.124915	AAUACUG	ENSMUST00000100299.3|Dock9|ENSMUSG00000025558.9|dedicator of cytokinesis 9
mm10_v2_chr17_+_25809085_25809171	0.123384	AAUACUG	ENSMUST00000045692.7|Fbxl16|ENSMUSG00000025738.7|F-box and leucine-rich repeat protein 16
mm10_v2_chr11_+_106036867_106036924	0.12029	AAUACUG	ENSMUST00000058438.8|Dcaf7|ENSMUSG00000049354.8|DDB1 and CUL4 associated factor 7
mm10_v2_chr7_+_66109474_66109515	0.120052	AAUACUG	ENSMUST00000036372.6|Chsy1|ENSMUSG00000032640.9|chondroitin sulfate synthase 1
mm10_v2_chr18_+_35562158_35562174	0.116937	AAUACUG	ENSMUST00000166793.1|Matr3|ENSMUSG00000037236.8|matrin 3
mm10_v2_chr4_+_155601414_155601443	0.116479	AAUACUG	ENSMUST00000105608.2|Slc35e2|ENSMUSG00000042202.9|solute carrier family 35, member E2
mm10_v2_chr18_+_76944384_76944444	0.115983	AAUACUG	ENSMUST00000156454.1|Hdhd2|ENSMUSG00000025421.8|haloacid dehalogenase-like hydrolase domain containing 2 	ENSMUST00000150990.1|Hdhd2|ENSMUSG00000025421.8|haloacid dehalogenase-like hydrolase domain containing 2 	ENSMUST00000026485.7|Hdhd2|ENSMUSG00000025421.8|haloacid dehalogenase-like hydrolase domain containing 2 	ENSMUST00000148955.1|Hdhd2|ENSMUSG00000025421.8|haloacid dehalogenase-like hydrolase domain containing 2
mm10_v2_chr18_+_73573044_73573044	0.114845	AAUACUG	ENSMUST00000091852.4|Mex3c|ENSMUSG00000037253.8|mex3 homolog C (C. elegans)
mm10_v2_chr2_-_122702615_122702717	0.113925	AAUACUG	ENSMUST00000005952.4|Slc30a4|ENSMUSG00000005802.6|solute carrier family 30 (zinc transporter), member 4 	ENSMUST00000099457.3|Slc30a4|ENSMUSG00000005802.6|solute carrier family 30 (zinc transporter), member 4
mm10_v2_chr11_+_98203059_98203059	0.11369	AAUACUG	ENSMUST00000107539.1|Cdk12|ENSMUSG00000003119.8|cyclin-dependent kinase 12
mm10_v2_chr8_-_115707778_115707794	0.113372	AAUACUG	ENSMUST00000109104.1|Maf|ENSMUSG00000055435.6|avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog
mm10_v2_chr1_-_143702832_143702893	0.113005	AAUACUG	ENSMUST00000018337.7|Cdc73|ENSMUSG00000026361.7|cell division cycle 73, Paf1/RNA polymerase II complex component
mm10_v2_chr14_-_26971232_26971232	0.112348	AAUACUG	ENSMUST00000036570.4|Appl1|ENSMUSG00000040760.4|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
mm10_v2_chr13_-_93499803_93499825	0.112113	AAUACUG	ENSMUST00000065537.7|Jmy|ENSMUSG00000021690.9|junction-mediating and regulatory protein
mm10_v2_chr7_+_27591513_27591562	0.111204	AAUACUG	ENSMUST00000108344.2|Akt2|ENSMUSG00000004056.9|thymoma viral proto-oncogene 2
mm10_v2_chr11_+_74770822_74770876	0.108871	AAUACUG	ENSMUST00000141755.1|Mettl16|ENSMUSG00000010554.8|methyltransferase like 16 	ENSMUST00000010698.6|Mettl16|ENSMUSG00000010554.8|methyltransferase like 16
mm10_v2_chr11_+_52098681_52098796	0.108562	AAUACUG	ENSMUST00000020608.2|Ppp2ca|ENSMUSG00000020349.4|protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform
mm10_v2_chr10_-_67285180_67285316	0.10807	AAUACUG	ENSMUST00000159002.1|Nrbf2|ENSMUSG00000075000.5|nuclear receptor binding factor 2 	ENSMUST00000077839.6|Nrbf2|ENSMUSG00000075000.5|nuclear receptor binding factor 2
mm10_v2_chr9_-_59036387_59036460	0.107123	AAUACUG	ENSMUST00000068664.5|Neo1|ENSMUSG00000032340.7|neogenin
mm10_v2_chr6_-_39206782_39206831	0.10648	AAUACUG	ENSMUST00000002305.8|Jhdm1d|ENSMUSG00000042599.8|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
mm10_v2_chr18_+_53862087_53862143	0.105448	AAUACUG	ENSMUST00000069597.6|Csnk1g3|ENSMUSG00000073563.2|casein kinase 1, gamma 3
mm10_v2_chr19_+_7417586_7417650	0.103459	AAUACUG	ENSMUST00000159348.1|2700081O15Rik|ENSMUSG00000053080.9|RIKEN cDNA 2700081O15 gene
mm10_v2_chr2_+_65845767_65845799	0.102911	AAUACUG	ENSMUST00000122912.1|Csrnp3|ENSMUSG00000044647.10|cysteine-serine-rich nuclear protein 3
mm10_v2_chr1_+_61638819_61638841	0.101985	AAUACUG	ENSMUST00000138768.1|Pard3b|ENSMUSG00000052062.8|par-3 partitioning defective 3 homolog B (C. elegans) 	ENSMUST00000075374.3|Pard3b|ENSMUSG00000052062.8|par-3 partitioning defective 3 homolog B (C. elegans)
mm10_v2_chr7_-_73541738_73541758	0.100792	AAUACUG	ENSMUST00000169922.2|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr4_+_102760294_102760525	0.099693	AAUACUG	ENSMUST00000072481.5|Sgip1|ENSMUSG00000028524.15|SH3-domain GRB2-like (endophilin) interacting protein 1 	ENSMUST00000156596.1|Sgip1|ENSMUSG00000028524.15|SH3-domain GRB2-like (endophilin) interacting protein 1 	ENSMUST00000080728.6|Sgip1|ENSMUSG00000028524.15|SH3-domain GRB2-like (endophilin) interacting protein 1 	ENSMUST00000106882.2|Sgip1|ENSMUSG00000028524.15|SH3-domain GRB2-like (endophilin) interacting protein 1
mm10_v2_chr7_-_121707253_121707460	0.0995848	AAUACUG	ENSMUST00000046929.6|Usp31|ENSMUSG00000063317.6|ubiquitin specific peptidase 31
mm10_v2_chr16_-_58523349_58523426	0.0979329	AAUACUG	ENSMUST00000137035.1|St3gal6|ENSMUSG00000022747.10|ST3 beta-galactoside alpha-2,3-sialyltransferase 6
mm10_v2_chr18_-_84951477_84951536	0.0963057	AAUACUG	ENSMUST00000025547.2|Timm21|ENSMUSG00000024645.4|tranlocase of inner mitochondrial membrane 21
mm10_v2_chr19_+_40831248_40831292	0.0962479	AAUACUG	ENSMUST00000025983.6|Ccnj|ENSMUSG00000025010.7|cyclin J 	ENSMUST00000120057.1|Ccnj|ENSMUSG00000025010.7|cyclin J
mm10_v2_chr10_-_117148474_117148510	0.0948201	AAUACUG	ENSMUST00000020381.3|Frs2|ENSMUSG00000020170.3|fibroblast growth factor receptor substrate 2
mm10_v2_chr2_-_167188787_167188815	0.0932223	AAUACUG	ENSMUST00000059826.8|Kcnb1|ENSMUSG00000050556.8|potassium voltage gated channel, Shab-related subfamily, member 1
mm10_v2_chr10_-_67096931_67096988	0.0881015	AAUACUG	ENSMUST00000020023.7|Reep3|ENSMUSG00000019873.7|receptor accessory protein 3
mm10_v2_chr3_+_121426495_121426541	0.0854332	AAUACUG	ENSMUST00000029773.8|Cnn3|ENSMUSG00000053931.7|calponin 3, acidic
mm10_v2_chrX_+_151344171_151344197	0.085379	AAUACUG	ENSMUST00000073364.5|Fam120c|ENSMUSG00000025262.8|family with sequence similarity 120, member C
mm10_v2_chr16_+_64851991_64851996	0.0838802	AAUACUG	ENSMUST00000067744.7|Cggbp1|ENSMUSG00000054604.7|CGG triplet repeat binding protein 1
mm10_v2_chr9_+_20652107_20652138	0.0829196	AAUACUG	ENSMUST00000034689.6|Pin1|ENSMUSG00000032171.6|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1
mm10_v2_chr15_+_96287518_96287604	0.0823724	AAUACUG	ENSMUST00000134985.2|Arid2|ENSMUSG00000033237.12|AT rich interactive domain 2 (ARID, RFX-like) 	ENSMUST00000096250.4|Arid2|ENSMUSG00000033237.12|AT rich interactive domain 2 (ARID, RFX-like)
mm10_v2_chr10_+_21295979_21296013	0.0819144	AAUACUG	ENSMUST00000020153.8|Hbs1l|ENSMUSG00000019977.9|Hbs1-like (S. cerevisiae) 	ENSMUST00000092674.6|Hbs1l|ENSMUSG00000019977.9|Hbs1-like (S. cerevisiae)
mm10_v2_chr13_+_118714678_118714701	0.08095	AAUACUG	ENSMUST00000022246.8|Fgf10|ENSMUSG00000021732.8|fibroblast growth factor 10
mm10_v2_chr3_-_30969399_30969425	0.0808654	AAUACUG	ENSMUST00000177992.1|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila) 	ENSMUST00000129817.2|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila) 	ENSMUST00000168645.1|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila) 	ENSMUST00000108255.1|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila) 	ENSMUST00000064718.5|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila) 	ENSMUST00000099163.3|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila)
mm10_v2_chr1_-_52233211_52233232	0.0807545	AAUACUG	ENSMUST00000114513.2|Gls|ENSMUSG00000026103.8|glutaminase 	ENSMUST00000114510.1|Gls|ENSMUSG00000026103.8|glutaminase
mm10_v2_chr17_-_79715034_79715047	0.0797563	AAUACUG	ENSMUST00000024894.1|Cyp1b1|ENSMUSG00000024087.3|cytochrome P450, family 1, subfamily b, polypeptide 1
mm10_v2_chr4_-_84675275_84675394	0.0790734	AAUACUG	ENSMUST00000176612.1|Bnc2|ENSMUSG00000028487.12|basonuclin 2
mm10_v2_chr19_+_6046576_6046662	0.0785686	AAUACUG	ENSMUST00000138532.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin 	ENSMUST00000129081.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin 	ENSMUST00000156550.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin
mm10_v2_chr12_+_64965742_64965775	0.0782294	AAUACUG	ENSMUST00000066296.7|Fam179b|ENSMUSG00000035614.10|family with sequence similarity 179, member B
mm10_v2_chr14_+_31251454_31251530	0.0781736	AAUACUG	ENSMUST00000022458.4|Bap1|ENSMUSG00000021901.4|Brca1 associated protein 1
mm10_v2_chr7_+_16401187_16401233	0.0764201	AAUACUG	ENSMUST00000098789.3|Zc3h4|ENSMUSG00000059273.7|zinc finger CCCH-type containing 4
mm10_v2_chr10_+_69533761_69533776	0.0763725	AAUACUG	ENSMUST00000182884.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr11_+_75679259_75679327	0.075265	AAUACUG	ENSMUST00000017920.7|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian) 	ENSMUST00000108426.1|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian) 	ENSMUST00000108425.1|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian) 	ENSMUST00000093115.3|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian)
mm10_v2_chr9_-_35267746_35267805	0.0746991	AAUACUG	ENSMUST00000125087.1|Fam118b|ENSMUSG00000050471.10|family with sequence similarity 118, member B 	ENSMUST00000121564.1|Fam118b|ENSMUSG00000050471.10|family with sequence similarity 118, member B 	ENSMUST00000063782.5|Fam118b|ENSMUSG00000050471.10|family with sequence similarity 118, member B 	ENSMUST00000059057.7|Fam118b|ENSMUSG00000050471.10|family with sequence similarity 118, member B
mm10_v2_chr18_+_31759817_31759851	0.0738229	AAUACUG	ENSMUST00000115808.2|Ammecr1l|ENSMUSG00000041915.8|AMME chromosomal region gene 1-like
mm10_v2_chr6_-_92183972_92184038	0.0729088	AAUACUG	ENSMUST00000140438.1|Mrps25|ENSMUSG00000014551.8|mitochondrial ribosomal protein S25
mm10_v2_chr3_-_119783262_119783388	0.072366	AAUACUG	ENSMUST00000029780.7|Ptbp2|ENSMUSG00000028134.7|polypyrimidine tract binding protein 2
mm10_v2_chr8_+_110919916_110919994	0.0718035	AAUACUG	ENSMUST00000117534.1|St3gal2|ENSMUSG00000031749.6|ST3 beta-galactoside alpha-2,3-sialyltransferase 2 	ENSMUST00000034197.4|St3gal2|ENSMUSG00000031749.6|ST3 beta-galactoside alpha-2,3-sialyltransferase 2
mm10_v2_chr6_+_4903298_4903346	0.0714354	AAUACUG	ENSMUST00000035813.2|Ppp1r9a|ENSMUSG00000032827.9|protein phosphatase 1, regulatory (inhibitor) subunit 9A
mm10_v2_chr12_+_71309876_71309984	0.0712918	AAUACUG	ENSMUST00000061273.5|Dact1|ENSMUSG00000044548.5|dapper homolog 1, antagonist of beta-catenin (xenopus) 	ENSMUST00000150639.1|Dact1|ENSMUSG00000044548.5|dapper homolog 1, antagonist of beta-catenin (xenopus)
mm10_v2_chr4_-_41569502_41569551	0.0672336	AAUACUG	ENSMUST00000108049.2|Fam219a|ENSMUSG00000028439.8|family with sequence similarity 219, member A 	ENSMUST00000108052.3|Fam219a|ENSMUSG00000028439.8|family with sequence similarity 219, member A 	ENSMUST00000108050.1|Fam219a|ENSMUSG00000028439.8|family with sequence similarity 219, member A
mm10_v2_chr17_+_74338943_74338987	0.0667235	AAUACUG	ENSMUST00000024869.6|Spast|ENSMUSG00000024068.6|spastin
mm10_v2_chr4_-_82505749_82505802	0.0666558	AAUACUG	ENSMUST00000107245.2|Nfib|ENSMUSG00000008575.11|nuclear factor I/B 	ENSMUST00000107246.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr17_-_79896028_79896123	0.0666072	AAUACUG	ENSMUST00000068282.5|Atl2|ENSMUSG00000059811.6|atlastin GTPase 2 	ENSMUST00000112437.1|Atl2|ENSMUSG00000059811.6|atlastin GTPase 2
mm10_v2_chr17_+_26676390_26676401	0.0662828	AAUACUG	ENSMUST00000015719.8|Atp6v0e|ENSMUSG00000015575.8|ATPase, H+ transporting, lysosomal V0 subunit E
mm10_v2_chr9_-_52168111_52168111	0.0659687	AAUACUG	ENSMUST00000165519.1|Zc3h12c|ENSMUSG00000035164.7|zinc finger CCCH type containing 12C
mm10_v2_chr2_+_52857844_52857868	0.0651722	AAUACUG	ENSMUST00000090952.4|Fmnl2|ENSMUSG00000036053.10|formin-like 2 	ENSMUST00000049483.6|Fmnl2|ENSMUSG00000036053.10|formin-like 2 	ENSMUST00000050719.6|Fmnl2|ENSMUSG00000036053.10|formin-like 2
mm10_v2_chr15_+_80623499_80623549	0.0644751	AAUACUG	ENSMUST00000043149.7|Grap2|ENSMUSG00000042351.8|GRB2-related adaptor protein 2
mm10_v2_chr9_+_70542872_70542920	0.0643377	AAUACUG	ENSMUST00000049263.7|Sltm|ENSMUSG00000032212.9|SAFB-like, transcription modulator
mm10_v2_chrX_-_75875101_75875182	0.0643311	AAUACUG	ENSMUST00000114059.3|Pls3|ENSMUSG00000016382.9|plastin 3 (T-isoform)
mm10_v2_chr2_-_102400863_102400970	0.0636619	AAUACUG	ENSMUST00000102573.1|Trim44|ENSMUSG00000027189.10|tripartite motif-containing 44
mm10_v2_chr11_+_73267388_73267539	0.062884	AAUACUG	ENSMUST00000049676.2|Trpv3|ENSMUSG00000043029.2|transient receptor potential cation channel, subfamily V, member 3
mm10_v2_chr15_-_101370125_101370169	0.0613717	AAUACUG	ENSMUST00000077196.4|Krt80|ENSMUSG00000037185.8|keratin 80
mm10_v2_chr11_+_52764634_52764693	0.0613409	AAUACUG	ENSMUST00000036796.7|Fstl4|ENSMUSG00000036264.9|follistatin-like 4
mm10_v2_chr3_-_103791537_103791563	0.0596752	AAUACUG	ENSMUST00000118317.1|Hipk1|ENSMUSG00000008730.11|homeodomain interacting protein kinase 1
mm10_v2_chr3_-_152982240_152982251	0.059342	AAUACUG	ENSMUST00000044278.5|St6galnac5|ENSMUSG00000039037.5|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5
mm10_v2_chr9_+_101074727_101074727	0.0573513	AAUACUG	ENSMUST00000085177.3|Msl2|ENSMUSG00000066415.3|male-specific lethal 2 homolog (Drosophila)
mm10_v2_chrX_+_20425688_20425762	0.0567629	AAUACUG	ENSMUST00000115384.2|Phf16|ENSMUSG00000037315.8|PHD finger protein 16
mm10_v2_chr4_+_97777606_97777632	0.0561409	AAUACUG	ENSMUST00000075448.6|Nfia|ENSMUSG00000028565.12|nuclear factor I/A 	ENSMUST00000092532.6|Nfia|ENSMUSG00000028565.12|nuclear factor I/A
mm10_v2_chr13_-_45964964_45965001	0.0558898	AAUACUG	ENSMUST00000180110.1|Atxn1|ENSMUSG00000046876.9|ataxin 1 	ENSMUST00000091628.3|Atxn1|ENSMUSG00000046876.9|ataxin 1 	ENSMUST00000167708.2|Atxn1|ENSMUSG00000046876.9|ataxin 1
mm10_v2_chr17_-_10319324_10319380	0.0532021	AAUACUG	ENSMUST00000097414.3|Qk|ENSMUSG00000062078.8|quaking 	ENSMUST00000042296.7|Qk|ENSMUSG00000062078.8|quaking
mm10_v2_chr7_+_102702331_102702331	0.051829	AAUACUG	ENSMUST00000094124.3|Olfr558|ENSMUSG00000070423.3|olfactory receptor 558
mm10_v2_chr14_-_105176860_105176918	0.0515747	AAUACUG	ENSMUST00000163545.1|Rbm26|ENSMUSG00000022119.9|RNA binding motif protein 26
mm10_v2_chr4_+_57637816_57637846	0.0510767	AAUACUG	ENSMUST00000150412.1|Gm20459|ENSMUSG00000089945.4|predicted gene 20459
mm10_v2_chr2_-_6884975_6884996	0.0502329	AAUACUG	ENSMUST00000114924.3|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000170438.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000114934.4|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr8_-_116732991_116733076	0.050196	AAUACUG	ENSMUST00000109102.2|Cdyl2|ENSMUSG00000031758.9|chromodomain protein, Y chromosome-like 2
mm10_v2_chr7_-_19310035_19310050	0.0478117	AAUACUG	ENSMUST00000003640.2|Fosb|ENSMUSG00000003545.2|FBJ osteosarcoma oncogene B
mm10_v2_chr1_-_136960427_136960494	0.0472536	AAUACUG	ENSMUST00000027649.7|Nr5a2|ENSMUSG00000026398.8|nuclear receptor subfamily 5, group A, member 2
mm10_v2_chr10_-_81427114_81427187	0.0472039	AAUACUG	ENSMUST00000078185.7|Nfic|ENSMUSG00000055053.11|nuclear factor I/C 	ENSMUST00000020461.8|Nfic|ENSMUSG00000055053.11|nuclear factor I/C 	ENSMUST00000105321.3|Nfic|ENSMUSG00000055053.11|nuclear factor I/C
mm10_v2_chrX_-_43167817_43167838	0.046899	AAUACUG	ENSMUST00000115058.1|Tenm1|ENSMUSG00000016150.9|teneurin transmembrane protein 1 	ENSMUST00000115059.1|Tenm1|ENSMUSG00000016150.9|teneurin transmembrane protein 1
mm10_v2_chr16_-_50432340_50432409	0.0468957	AAUACUG	ENSMUST00000066037.6|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089399.4|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089404.3|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000114477.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000138166.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila)
mm10_v2_chr2_+_52072823_52072854	0.0465508	AAUACUG	ENSMUST00000112693.2|Rif1|ENSMUSG00000036202.9|Rap1 interacting factor 1 homolog (yeast) 	ENSMUST00000069794.5|Rif1|ENSMUSG00000036202.9|Rap1 interacting factor 1 homolog (yeast)
mm10_v2_chr15_+_99702278_99702312	0.0460965	AAUACUG	ENSMUST00000023759.4|Smarcd1|ENSMUSG00000023018.4|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm10_v2_chr2_+_127008711_127008756	0.0451816	AAUACUG	ENSMUST00000110394.1|Ap4e1|ENSMUSG00000001998.9|adaptor-related protein complex AP-4, epsilon 1 	ENSMUST00000002063.8|Ap4e1|ENSMUSG00000001998.9|adaptor-related protein complex AP-4, epsilon 1
mm10_v2_chr5_+_135023482_135023507	0.0435413	AAUACUG	ENSMUST00000005509.4|Stx1a|ENSMUSG00000007207.4|syntaxin 1A (brain)
mm10_v2_chr10_+_53596936_53597004	0.0428879	AAUACUG	ENSMUST00000020004.6|Asf1a|ENSMUSG00000019857.6|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)
mm10_v2_chr5_-_143527977_143528036	0.0424463	AAUACUG	ENSMUST00000100489.3|Rac1|ENSMUSG00000001847.8|RAS-related C3 botulinum substrate 1 	ENSMUST00000080537.7|Rac1|ENSMUSG00000001847.8|RAS-related C3 botulinum substrate 1
mm10_v2_chr11_+_94990996_94991035	0.0414663	AAUACUG	ENSMUST00000038696.5|Ppp1r9b|ENSMUSG00000038976.6|protein phosphatase 1, regulatory subunit 9B
mm10_v2_chr3_+_152210458_152210534	0.0413427	AAUACUG	ENSMUST00000166984.1|Fubp1|ENSMUSG00000028034.9|far upstream element (FUSE) binding protein 1 	ENSMUST00000106121.1|Fubp1|ENSMUSG00000028034.9|far upstream element (FUSE) binding protein 1
mm10_v2_chr1_+_55131231_55131249	0.0411798	AAUACUG	ENSMUST00000162364.1|Mob4|ENSMUSG00000025979.7|MOB family member 4, phocein 	ENSMUST00000159311.1|Mob4|ENSMUSG00000025979.7|MOB family member 4, phocein
mm10_v2_chr16_+_92058270_92058328	0.0409779	AAUACUG	ENSMUST00000047429.8|Mrps6|ENSMUSG00000039680.9|mitochondrial ribosomal protein S6 	ENSMUST00000113975.2|Slc5a3|ENSMUSG00000089774.2|solute carrier family 5 (inositol transporters), member 3
mm10_v2_chr4_-_41695442_41695445	0.0399862	AAUACUG	ENSMUST00000102961.3|Cntfr|ENSMUSG00000028444.11|ciliary neurotrophic factor receptor 	ENSMUST00000064443.6|Cntfr|ENSMUSG00000028444.11|ciliary neurotrophic factor receptor
mm10_v2_chr12_+_86241848_86241936	0.0395033	AAUACUG	ENSMUST00000071106.4|Gpatch2l|ENSMUSG00000021254.8|G patch domain containing 2 like
mm10_v2_chr4_-_81442756_81442836	0.0390333	AAUACUG	ENSMUST00000107262.1|Mpdz|ENSMUSG00000028402.11|multiple PDZ domain protein 	ENSMUST00000102830.3|Mpdz|ENSMUSG00000028402.11|multiple PDZ domain protein
mm10_v2_chr15_-_8444449_8444506	0.0389231	AAUACUG	ENSMUST00000052965.6|Nipbl|ENSMUSG00000022141.6|Nipped-B homolog (Drosophila)
mm10_v2_chr11_+_83850832_83850855	0.0378418	AAUACUG	ENSMUST00000021016.3|Hnf1b|ENSMUSG00000020679.5|HNF1 homeobox B
mm10_v2_chr2_-_112368021_112368036	0.0370401	AAUACUG	ENSMUST00000028551.3|Emc4|ENSMUSG00000027131.3|ER membrane protein complex subunit 4
mm10_v2_chr3_-_144205165_144205220	0.0368892	AAUACUG	ENSMUST00000120539.1|Lmo4|ENSMUSG00000028266.11|LIM domain only 4
mm10_v2_chr7_-_34313531_34313568	0.0364104	AAUACUG	ENSMUST00000108074.1|4931406P16Rik|ENSMUSG00000066571.7|RIKEN cDNA 4931406P16 gene
mm10_v2_chr15_+_81586206_81586250	0.0360763	AAUACUG	ENSMUST00000068387.4|Ep300|ENSMUSG00000055024.6|E1A binding protein p300
mm10_v2_chr3_+_156561792_156561869	0.0348894	AAUACUG	ENSMUST00000074015.4|Negr1|ENSMUSG00000040037.7|neuronal growth regulator 1
mm10_v2_chr18_-_24530203_24530245	0.0316136	AAUACUG	ENSMUST00000046206.3|Rprd1a|ENSMUSG00000040446.3|regulation of nuclear pre-mRNA domain containing 1A
mm10_v2_chr12_-_75596195_75596261	0.030883	AAUACUG	ENSMUST00000021447.7|Ppp2r5e|ENSMUSG00000021051.9|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform
mm10_v2_chrX_+_38189780_38189826	0.0299104	AAUACUG	ENSMUST00000049740.2|Zbtb33|ENSMUSG00000048047.3|zinc finger and BTB domain containing 33 	ENSMUST00000115142.2|Zbtb33|ENSMUSG00000048047.3|zinc finger and BTB domain containing 33
mm10_v2_chr13_+_15463837_15463980	0.0279545	AAUACUG	ENSMUST00000110510.3|Gli3|ENSMUSG00000021318.9|GLI-Kruppel family member GLI3
mm10_v2_chr3_-_9610074_9610086	0.0278639	AAUACUG	ENSMUST00000041124.7|Zfp704|ENSMUSG00000040209.7|zinc finger protein 704
mm10_v2_chr10_+_93160824_93160894	0.0264561	AAUACUG	ENSMUST00000069965.7|Cdk17|ENSMUSG00000020015.9|cyclin-dependent kinase 17
mm10_v2_chr15_-_81400043_81400093	0.0257919	AAUACUG	ENSMUST00000172107.1|St13|ENSMUSG00000022403.8|suppression of tumorigenicity 13 	ENSMUST00000169204.1|St13|ENSMUSG00000022403.8|suppression of tumorigenicity 13 	ENSMUST00000163382.1|St13|ENSMUSG00000022403.8|suppression of tumorigenicity 13
mm10_v2_chr6_+_22288221_22288288	0.0254548	AAUACUG	ENSMUST00000128245.1|Wnt16|ENSMUSG00000029671.9|wingless-related MMTV integration site 16 	ENSMUST00000031681.3|Wnt16|ENSMUSG00000029671.9|wingless-related MMTV integration site 16 	ENSMUST00000148639.1|Wnt16|ENSMUSG00000029671.9|wingless-related MMTV integration site 16
mm10_v2_chr16_+_13358375_13358439	0.0248108	AAUACUG	ENSMUST00000149359.1|Mkl2|ENSMUSG00000009569.8|MKL/myocardin-like 2
mm10_v2_chr3_+_16183177_16183206	0.0234659	AAUACUG	ENSMUST00000108345.2|Ythdf3|ENSMUSG00000047213.8|YTH domain family 3 	ENSMUST00000108346.2|Ythdf3|ENSMUSG00000047213.8|YTH domain family 3
mm10_v2_chr10_-_42276744_42276763	0.0234087	AAUACUG	ENSMUST00000105502.1|Foxo3|ENSMUSG00000048756.5|forkhead box O3 	ENSMUST00000105501.1|Foxo3|ENSMUSG00000048756.5|forkhead box O3
mm10_v2_chr2_-_60125651_60125775	0.0233976	AAUACUG	ENSMUST00000112550.1|Baz2b|ENSMUSG00000026987.10|bromodomain adjacent to zinc finger domain, 2B
mm10_v2_chr1_+_43098710_43098760	0.0232897	AAUACUG	ENSMUST00000010434.7|AI597479|ENSMUSG00000010290.7|expressed sequence AI597479
mm10_v2_chr4_-_126429501_126429556	0.0224929	AAUACUG	ENSMUST00000069097.6|Ago3|ENSMUSG00000028842.9|argonaute RISC catalytic subunit 3
mm10_v2_chr15_-_82016134_82016170	0.0219957	AAUACUG	ENSMUST00000152227.1|Desi1|ENSMUSG00000022472.10|desumoylating isopeptidase 1
mm10_v2_chr16_-_4213404_4213404	0.021806	AAUACUG	ENSMUST00000023165.6|Crebbp|ENSMUSG00000022521.8|CREB binding protein
mm10_v2_chr15_+_81400132_81400215	0.0217925	AAUACUG	ENSMUST00000163754.1|Xpnpep3|ENSMUSG00000022401.5|X-prolyl aminopeptidase (aminopeptidase P) 3, putative 	ENSMUST00000041609.4|Xpnpep3|ENSMUSG00000022401.5|X-prolyl aminopeptidase (aminopeptidase P) 3, putative
mm10_v2_chr8_+_88118747_88118777	0.0213843	AAUACUG	ENSMUST00000095214.3|Cnep1r1|ENSMUSG00000036810.10|CTD nuclear envelope phosphatase 1 regulatory subunit 1
mm10_v2_chr1_+_82586942_82586988	0.0208345	AAUACUG	ENSMUST00000113457.2|Col4a3|ENSMUSG00000079465.2|collagen, type IV, alpha 3
mm10_v2_chr10_-_84440591_84440604	0.019775	AAUACUG	ENSMUST00000020220.8|Nuak1|ENSMUSG00000020032.8|NUAK family, SNF1-like kinase, 1
mm10_v2_chr1_-_3671498_3671498	0.0195753	AAUACUG	ENSMUST00000070533.4|Xkr4|ENSMUSG00000051951.5|X Kell blood group precursor related family member 4
mm10_v2_chr17_-_46031813_46031863	0.019124	AAUACUG	ENSMUST00000024747.7|Vegfa|ENSMUSG00000023951.10|vascular endothelial growth factor A
mm10_v2_chr1_+_74506044_74506105	0.0190531	AAUACUG	ENSMUST00000087215.5|Rqcd1|ENSMUSG00000026174.8|rcd1 (required for cell differentiation) homolog 1 (S. pombe)
mm10_v2_chr14_+_63606491_63606527	0.0188269	AAUACUG	ENSMUST00000119973.2|Xkr6|ENSMUSG00000035067.9|X Kell blood group precursor related family member 6 homolog
mm10_v2_chr4_+_59805829_59805914	0.0183105	AAUACUG	ENSMUST00000030080.6|Snx30|ENSMUSG00000028385.8|sorting nexin family member 30
mm10_v2_chr1_+_160978576_160978606	0.0167312	AAUACUG	ENSMUST00000064725.5|Serpinc1|ENSMUSG00000026715.7|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
mm10_v2_chr9_-_108263887_108263965	0.0162237	AAUACUG	ENSMUST00000166905.1|Dag1|ENSMUSG00000039952.9|dystroglycan 1 	ENSMUST00000080435.2|Dag1|ENSMUSG00000039952.9|dystroglycan 1
mm10_v2_chr16_+_33380765_33380787	0.0148162	AAUACUG	ENSMUST00000165418.1|Zfp148|ENSMUSG00000022811.10|zinc finger protein 148
mm10_v2_chr15_-_28025834_28025879	0.0143483	AAUACUG	ENSMUST00000090247.5|Trio|ENSMUSG00000022263.9|triple functional domain (PTPRF interacting)
mm10_v2_chr4_-_94603239_94603253	0.0143192	AAUACUG	ENSMUST00000107107.2|Plaa|ENSMUSG00000028577.7|phospholipase A2, activating protein
mm10_v2_chr9_+_35421541_35421616	0.0142885	AAUACUG	ENSMUST00000119129.2|Cdon|ENSMUSG00000038119.8|cell adhesion molecule-related/down-regulated by oncogenes
mm10_v2_chr5_-_123572976_123573031	0.0129126	AAUACUG	ENSMUST00000031388.8|Vps33a|ENSMUSG00000029434.8|vacuolar protein sorting 33A (yeast)
mm10_v2_chr18_+_64887690_64887762	0.0122505	AAUACUG	ENSMUST00000163516.1|Nedd4l|ENSMUSG00000024589.9|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm10_v2_chr9_-_114390633_114390687	0.0119098	AAUACUG	ENSMUST00000084881.4|Crtap|ENSMUSG00000032431.6|cartilage associated protein
mm10_v2_chr3_+_53041517_53041583	0.0114731	AAUACUG	ENSMUST00000059562.7|Lhfp|ENSMUSG00000048332.7|lipoma HMGIC fusion partner 	ENSMUST00000147139.1|Lhfp|ENSMUSG00000048332.7|lipoma HMGIC fusion partner
mm10_v2_chr13_+_49341549_49341623	0.0110539	AAUACUG	ENSMUST00000110084.2|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila) 	ENSMUST00000048544.6|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila) 	ENSMUST00000110085.3|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila)
mm10_v2_chr4_+_11704439_11704457	0.010793	AAUACUG	ENSMUST00000108304.2|Gem|ENSMUSG00000028214.7|GTP binding protein (gene overexpressed in skeletal muscle)
mm10_v2_chr16_+_33185045_33185153	0.0106237	AAUACUG	ENSMUST00000039733.8|Osbpl11|ENSMUSG00000022807.8|oxysterol binding protein-like 11
mm10_v2_chr17_+_87107621_87107684	0.0104779	AAUACUG	ENSMUST00000041369.6|Socs5|ENSMUSG00000037104.8|suppressor of cytokine signaling 5
mm10_v2_chr6_+_53573364_53573394	0.00899754	AAUACUG	ENSMUST00000047450.7|Creb5|ENSMUSG00000053007.6|cAMP responsive element binding protein 5
mm10_v2_chr18_-_12236301_12236405	0.00797165	AAUACUG	ENSMUST00000025279.5|Npc1|ENSMUSG00000024413.7|Niemann Pick type C1
mm10_v2_chr15_-_48791933_48792063	0.00749749	AAUACUG	ENSMUST00000160658.1|Csmd3|ENSMUSG00000022311.9|CUB and Sushi multiple domains 3 	ENSMUST00000100670.3|Csmd3|ENSMUSG00000022311.9|CUB and Sushi multiple domains 3 	ENSMUST00000162830.1|Csmd3|ENSMUSG00000022311.9|CUB and Sushi multiple domains 3
mm10_v2_chr18_-_88894322_88894371	0.00732829	AAUACUG	ENSMUST00000070116.5|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6 	ENSMUST00000125362.1|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6
mm10_v2_chr18_-_34931993_34932007	0.0066789	AAUACUG	ENSMUST00000025218.7|Etf1|ENSMUSG00000024360.7|eukaryotic translation termination factor 1
mm10_v2_chr8_+_26158186_26158252	0.00650121	AAUACUG	ENSMUST00000036807.5|Thap1|ENSMUSG00000037214.5|THAP domain containing, apoptosis associated protein 1 	ENSMUST00000130231.1|Thap1|ENSMUSG00000037214.5|THAP domain containing, apoptosis associated protein 1
mm10_v2_chr1_-_155972887_155972890	0.00580056	AAUACUG	ENSMUST00000138762.1|Cep350|ENSMUSG00000033671.11|centrosomal protein 350 	ENSMUST00000124495.1|Cep350|ENSMUSG00000033671.11|centrosomal protein 350
mm10_v2_chr19_-_59943647_59943678	0.0049175	AAUACUG	ENSMUST00000171986.1|Rab11fip2|ENSMUSG00000040022.8|RAB11 family interacting protein 2 (class I)
mm10_v2_chr1_-_82291370_82291416	0.00479114	AAUACUG	ENSMUST00000069799.2|Irs1|ENSMUSG00000055980.2|insulin receptor substrate 1
mm10_v2_chrX_+_164419855_164419909	0.00354814	AAUACUG	ENSMUST00000112255.1|Piga|ENSMUSG00000031381.9|phosphatidylinositol glycan anchor biosynthesis, class A
mm10_v2_chr1_+_171370345_171370359	0.000977935	AAUACUG	ENSMUST00000006578.3|Pvrl4|ENSMUSG00000006411.6|poliovirus receptor-related 4 	ENSMUST00000094325.4|Pvrl4|ENSMUSG00000006411.6|poliovirus receptor-related 4
mm10_v2_chr1_+_138963709_138963808	0.00026173	AAUACUG	ENSMUST00000168527.1|Dennd1b|ENSMUSG00000056268.9|DENN/MADD domain containing 1B
mm10_v2_chr1_-_34843050_34843065	0.000138226	AAUACUG	ENSMUST00000170092.1|Fam168b|ENSMUSG00000037503.6|family with sequence similarity 168, member B 	ENSMUST00000167518.1|Fam168b|ENSMUSG00000037503.6|family with sequence similarity 168, member B 	ENSMUST00000047534.5|Fam168b|ENSMUSG00000037503.6|family with sequence similarity 168, member B
