mm10_v2_chr18_-_61400363_61400449	0.18478	AAUGCCC	ENSMUST00000063307.5|Ppargc1b|ENSMUSG00000033871.8|peroxisome proliferative activated receptor, gamma, coactivator 1 beta 	ENSMUST00000075299.6|Ppargc1b|ENSMUSG00000033871.8|peroxisome proliferative activated receptor, gamma, coactivator 1 beta
mm10_v2_chr8_+_13339656_13339674	0.156049	AAUGCCC	ENSMUST00000170909.1|Tfdp1|ENSMUSG00000038482.10|transcription factor Dp 1
mm10_v2_chr2_-_53191214_53191284	0.139289	AAUGCCC	ENSMUST00000076313.6|Prpf40a|ENSMUSG00000061136.7|PRP40 pre-mRNA processing factor 40 homolog A (yeast) 	ENSMUST00000125243.1|Prpf40a|ENSMUSG00000061136.7|PRP40 pre-mRNA processing factor 40 homolog A (yeast)
mm10_v2_chr9_+_108692116_108692193	0.139129	AAUGCCC	ENSMUST00000035220.6|Prkar2a|ENSMUSG00000032601.8|protein kinase, cAMP dependent regulatory, type II alpha
mm10_v2_chr14_+_116925291_116925362	0.0961423	AAUGCCC	ENSMUST00000078849.4|Gpc6|ENSMUSG00000058571.4|glypican 6
mm10_v2_chr19_+_53310495_53310552	0.0941036	AAUGCCC	ENSMUST00000003870.7|Mxi1|ENSMUSG00000025025.7|Max interacting protein 1
mm10_v2_chrX_-_142966709_142966734	0.0918868	AAUGCCC	ENSMUST00000041317.2|Ammecr1|ENSMUSG00000042225.3|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
mm10_v2_chr12_-_108003594_108003613	0.0917541	AAUGCCC	ENSMUST00000066060.4|Bcl11b|ENSMUSG00000048251.9|B cell leukemia/lymphoma 11B
mm10_v2_chr4_+_136172367_136172395	0.0823887	AAUGCCC	ENSMUST00000061721.5|E2f2|ENSMUSG00000018983.9|E2F transcription factor 2
mm10_v2_chr4_-_91372028_91372069	0.0803512	AAUGCCC	ENSMUST00000107110.1|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000008633.8|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000107118.1|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chr2_+_55437100_55437182	0.0642251	AAUGCCC	ENSMUST00000112633.2|Kcnj3|ENSMUSG00000026824.5|potassium inwardly-rectifying channel, subfamily J, member 3 	ENSMUST00000112632.1|Kcnj3|ENSMUSG00000026824.5|potassium inwardly-rectifying channel, subfamily J, member 3
mm10_v2_chr16_-_11203259_11203331	0.063785	AAUGCCC	ENSMUST00000119953.1|Rsl1d1|ENSMUSG00000005846.11|ribosomal L1 domain containing 1
mm10_v2_chr5_+_13399309_13399382	0.0555372	AAUGCCC	ENSMUST00000030714.7|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 	ENSMUST00000141968.1|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm10_v2_chr14_-_31830402_31830440	0.0535755	AAUGCCC	ENSMUST00000014640.7|Ankrd28|ENSMUSG00000014496.7|ankyrin repeat domain 28
mm10_v2_chr1_-_105356658_105356714	0.0535562	AAUGCCC	ENSMUST00000058688.5|Rnf152|ENSMUSG00000047496.5|ring finger protein 152 	ENSMUST00000172299.1|Rnf152|ENSMUSG00000047496.5|ring finger protein 152
mm10_v2_chr3_+_88532314_88532396	0.0533825	AAUGCCC	ENSMUST00000172699.1|Mex3a|ENSMUSG00000074480.4|mex3 homolog A (C. elegans)
mm10_v2_chr4_+_59189240_59189257	0.0508559	AAUGCCC	ENSMUST00000030074.7|Ugcg|ENSMUSG00000028381.8|UDP-glucose ceramide glucosyltransferase
mm10_v2_chr16_-_30388530_30388530	0.0505068	AAUGCCC	ENSMUST00000100013.2|Atp13a3|ENSMUSG00000022533.7|ATPase type 13A3 	ENSMUST00000061350.6|Atp13a3|ENSMUSG00000022533.7|ATPase type 13A3
mm10_v2_chr15_+_41789495_41789527	0.0482876	AAUGCCC	ENSMUST00000090095.5|Oxr1|ENSMUSG00000022307.9|oxidation resistance 1 	ENSMUST00000022918.7|Oxr1|ENSMUSG00000022307.9|oxidation resistance 1
mm10_v2_chr12_+_40446050_40446099	0.0457449	AAUGCCC	ENSMUST00000037488.6|Dock4|ENSMUSG00000035954.9|dedicator of cytokinesis 4
mm10_v2_chr9_+_72532214_72532271	0.0449612	AAUGCCC	ENSMUST00000163401.2|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7 	ENSMUST00000093820.3|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7
mm10_v2_chr11_-_84129582_84129620	0.0442851	AAUGCCC	ENSMUST00000018795.6|Tada2a|ENSMUSG00000018651.8|transcriptional adaptor 2A
mm10_v2_chr16_+_34784917_34784935	0.0442624	AAUGCCC	ENSMUST00000023538.8|Mylk|ENSMUSG00000022836.10|myosin, light polypeptide kinase
mm10_v2_chr15_-_73184840_73184971	0.0438476	AAUGCCC	ENSMUST00000044113.10|Ago2|ENSMUSG00000036698.10|argonaute RISC catalytic subunit 2
mm10_v2_chr9_-_62980874_62980902	0.0429684	AAUGCCC	ENSMUST00000098651.4|Pias1|ENSMUSG00000032405.9|protein inhibitor of activated STAT 1
mm10_v2_chr5_-_90366176_90366192	0.0427754	AAUGCCC	ENSMUST00000014421.8|Ankrd17|ENSMUSG00000055204.8|ankyrin repeat domain 17 	ENSMUST00000081914.6|Ankrd17|ENSMUSG00000055204.8|ankyrin repeat domain 17 	ENSMUST00000168058.2|Ankrd17|ENSMUSG00000055204.8|ankyrin repeat domain 17
mm10_v2_chr1_+_156558844_156559049	0.0396055	AAUGCCC	ENSMUST00000166172.2|Abl2|ENSMUSG00000026596.7|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene) 	ENSMUST00000027888.6|Abl2|ENSMUSG00000026596.7|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)
mm10_v2_chr6_-_88446491_88446539	0.0382987	AAUGCCC	ENSMUST00000165242.1|Eefsec|ENSMUSG00000033216.7|eukaryotic elongation factor, selenocysteine-tRNA-specific
mm10_v2_chr6_-_38876163_38876234	0.0379891	AAUGCCC	ENSMUST00000161779.1|Hipk2|ENSMUSG00000061436.9|homeodomain interacting protein kinase 2
mm10_v2_chr6_-_99666762_99666786	0.0368665	AAUGCCC	ENSMUST00000032151.2|Eif4e3|ENSMUSG00000093661.1|eukaryotic translation initiation factor 4E member 3
mm10_v2_chr15_+_58415456_58415512	0.0367141	AAUGCCC	ENSMUST00000037270.3|D15Ertd621e|ENSMUSG00000037119.3|DNA segment, Chr 15, ERATO Doi 621, expressed
mm10_v2_chr14_+_8080315_8080385	0.0356865	AAUGCCC	ENSMUST00000023924.3|Rpp14|ENSMUSG00000023156.3|ribonuclease P 14 subunit
mm10_v2_chr9_-_75559604_75559665	0.0353886	AAUGCCC	ENSMUST00000072232.7|Tmod3|ENSMUSG00000058587.7|tropomodulin 3
mm10_v2_chr10_+_87859255_87859266	0.0350921	AAUGCCC	ENSMUST00000105300.2|Igf1|ENSMUSG00000020053.12|insulin-like growth factor 1
mm10_v2_chr8_-_122974793_122974793	0.0349113	AAUGCCC	ENSMUST00000098334.5|Ankrd11|ENSMUSG00000035569.10|ankyrin repeat domain 11
mm10_v2_chr14_+_75455957_75455996	0.0348483	AAUGCCC	ENSMUST00000164848.1|Siah3|ENSMUSG00000091722.1|seven in absentia homolog 3 (Drosophila)
mm10_v2_chr1_-_64737735_64737756	0.0345459	AAUGCCC	ENSMUST00000063982.5|Fzd5|ENSMUSG00000045005.8|frizzled homolog 5 (Drosophila) 	ENSMUST00000116133.2|Fzd5|ENSMUSG00000045005.8|frizzled homolog 5 (Drosophila)
mm10_v2_chr15_-_98607611_98607638	0.0343978	AAUGCCC	ENSMUST00000096224.4|Adcy6|ENSMUSG00000022994.8|adenylate cyclase 6
mm10_v2_chr11_+_33963013_33963013	0.0342936	AAUGCCC	ENSMUST00000020362.2|Kcnmb1|ENSMUSG00000020155.2|potassium large conductance calcium-activated channel, subfamily M, beta member 1
mm10_v2_chr4_-_132212255_132212303	0.0340767	AAUGCCC	ENSMUST00000152796.1|Ythdf2|ENSMUSG00000040025.11|YTH domain family 2
mm10_v2_chr1_+_131910458_131910539	0.0336975	AAUGCCC	ENSMUST00000062264.6|Nucks1|ENSMUSG00000026434.6|nuclear casein kinase and cyclin-dependent kinase substrate 1
mm10_v2_chr10_-_118868903_118868903	0.0327939	AAUGCCC	ENSMUST00000004281.8|Dyrk2|ENSMUSG00000028630.8|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
mm10_v2_chr9_+_7184514_7184567	0.0322575	AAUGCCC	ENSMUST00000034499.8|Dcun1d5|ENSMUSG00000032002.9|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)
mm10_v2_chr8_-_115707778_115707794	0.0315526	AAUGCCC	ENSMUST00000109104.1|Maf|ENSMUSG00000055435.6|avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog
mm10_v2_chr10_+_39732099_39732140	0.0313709	AAUGCCC	ENSMUST00000019986.6|Rev3l|ENSMUSG00000019841.9|REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae)
mm10_v2_chr9_+_113930934_113930987	0.0302575	AAUGCCC	ENSMUST00000084885.5|Ubp1|ENSMUSG00000009741.8|upstream binding protein 1 	ENSMUST00000009885.7|Ubp1|ENSMUSG00000009741.8|upstream binding protein 1
mm10_v2_chr7_+_16130285_16130333	0.0302419	AAUGCCC	ENSMUST00000168693.1|Slc8a2|ENSMUSG00000030376.7|solute carrier family 8 (sodium/calcium exchanger), member 2
mm10_v2_chr7_-_118491912_118491975	0.0301529	AAUGCCC	ENSMUST00000178344.1|Itpripl2|ENSMUSG00000095115.1|inositol 1,4,5-triphosphate receptor interacting protein-like 2
mm10_v2_chr10_+_11281304_11281357	0.0297512	AAUGCCC	ENSMUST00000129456.1|Fbxo30|ENSMUSG00000047648.7|F-box protein 30
mm10_v2_chrX_-_104413825_104413856	0.0297441	AAUGCCC	ENSMUST00000033695.5|Abcb7|ENSMUSG00000031333.7|ATP-binding cassette, sub-family B (MDR/TAP), member 7
mm10_v2_chr14_-_18239053_18239127	0.0286661	AAUGCCC	ENSMUST00000090543.5|Nr1d2|ENSMUSG00000021775.10|nuclear receptor subfamily 1, group D, member 2
mm10_v2_chr9_-_57645561_57645672	0.0284268	AAUGCCC	ENSMUST00000034863.6|Csk|ENSMUSG00000032312.6|c-src tyrosine kinase
mm10_v2_chr10_-_128891674_128891718	0.0268396	AAUGCCC	ENSMUST00000026408.6|Gdf11|ENSMUSG00000025352.6|growth differentiation factor 11
mm10_v2_chr4_+_123201503_123201529	0.0262199	AAUGCCC	ENSMUST00000068262.5|Nt5c1a|ENSMUSG00000054958.6|5'-nucleotidase, cytosolic IA
mm10_v2_chr5_-_96161990_96162097	0.0258328	AAUGCCC	ENSMUST00000155901.1|Cnot6l|ENSMUSG00000034724.11|CCR4-NOT transcription complex, subunit 6-like
mm10_v2_chr11_+_77686155_77686179	0.0248323	AAUGCCC	ENSMUST00000100802.4|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2 	ENSMUST00000181023.1|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2
mm10_v2_chr11_+_20543307_20543336	0.0245452	AAUGCCC	ENSMUST00000093292.4|Sertad2|ENSMUSG00000049800.7|SERTA domain containing 2
mm10_v2_chr7_-_17027853_17027921	0.0244515	AAUGCCC	ENSMUST00000003183.5|Ppp5c|ENSMUSG00000003099.5|protein phosphatase 5, catalytic subunit
mm10_v2_chr19_-_29805989_29806009	0.0227363	AAUGCCC	ENSMUST00000177155.1|9930021J03Rik|ENSMUSG00000046138.8|RIKEN cDNA 9930021J03 gene 	ENSMUST00000059484.7|9930021J03Rik|ENSMUSG00000046138.8|RIKEN cDNA 9930021J03 gene
mm10_v2_chr10_-_120476469_120476527	0.0213316	AAUGCCC	ENSMUST00000072777.7|Hmga2|ENSMUSG00000056758.8|high mobility group AT-hook 2 	ENSMUST00000159699.1|Hmga2|ENSMUSG00000056758.8|high mobility group AT-hook 2
mm10_v2_chr11_+_77216180_77216287	0.0211972	AAUGCCC	ENSMUST00000037912.5|Ssh2|ENSMUSG00000037926.9|slingshot homolog 2 (Drosophila) 	ENSMUST00000156488.1|Ssh2|ENSMUSG00000037926.9|slingshot homolog 2 (Drosophila)
mm10_v2_chr7_-_116038734_116038750	0.0197641	AAUGCCC	ENSMUST00000166877.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chrX_-_103821940_103821992	0.0195282	AAUGCCC	ENSMUST00000042664.5|Slc16a2|ENSMUSG00000033965.6|solute carrier family 16 (monocarboxylic acid transporters), member 2
mm10_v2_chr13_-_96670838_96670936	0.0181845	AAUGCCC	ENSMUST00000022176.8|Hmgcr|ENSMUSG00000021670.8|3-hydroxy-3-methylglutaryl-Coenzyme A reductase
mm10_v2_chr15_-_93275151_93275178	0.0180481	AAUGCCC	ENSMUST00000057896.4|Gxylt1|ENSMUSG00000036197.9|glucoside xylosyltransferase 1 	ENSMUST00000049484.6|Gxylt1|ENSMUSG00000036197.9|glucoside xylosyltransferase 1
mm10_v2_chr2_-_57114970_57115038	0.017926	AAUGCCC	ENSMUST00000028166.2|Nr4a2|ENSMUSG00000026826.7|nuclear receptor subfamily 4, group A, member 2
mm10_v2_chr10_+_84576626_84576626	0.0178563	AAUGCCC	ENSMUST00000020223.7|Tcp11l2|ENSMUSG00000020034.7|t-complex 11 (mouse) like 2
mm10_v2_chr3_+_90526849_90526859	0.0166755	AAUGCCC	ENSMUST00000167598.2|S100a14|ENSMUSG00000042306.5|S100 calcium binding protein A14 	ENSMUST00000164481.2|S100a14|ENSMUSG00000042306.5|S100 calcium binding protein A14
mm10_v2_chr15_+_102406143_102406380	0.0156336	AAUGCCC	ENSMUST00000170884.1|Sp1|ENSMUSG00000001280.6|trans-acting transcription factor 1 	ENSMUST00000165924.1|Sp1|ENSMUSG00000001280.6|trans-acting transcription factor 1 	ENSMUST00000163709.1|Sp1|ENSMUSG00000001280.6|trans-acting transcription factor 1 	ENSMUST00000001326.6|Sp1|ENSMUSG00000001280.6|trans-acting transcription factor 1
mm10_v2_chr11_+_70432627_70432707	0.0151415	AAUGCCC	ENSMUST00000084954.6|Arrb2|ENSMUSG00000060216.9|arrestin, beta 2 	ENSMUST00000108568.3|Arrb2|ENSMUSG00000060216.9|arrestin, beta 2 	ENSMUST00000079056.2|Arrb2|ENSMUSG00000060216.9|arrestin, beta 2 	ENSMUST00000102564.4|Arrb2|ENSMUSG00000060216.9|arrestin, beta 2 	ENSMUST00000124943.1|Arrb2|ENSMUSG00000060216.9|arrestin, beta 2 	ENSMUST00000150076.1|Arrb2|ENSMUSG00000060216.9|arrestin, beta 2 	ENSMUST00000102563.1|Arrb2|ENSMUSG00000060216.9|arrestin, beta 2
mm10_v2_chr17_-_80480435_80480462	0.0150976	AAUGCCC	ENSMUST00000068714.5|Sos1|ENSMUSG00000024241.6|son of sevenless homolog 1 (Drosophila)
mm10_v2_chr18_-_39490649_39490717	0.0149431	AAUGCCC	ENSMUST00000115567.1|Nr3c1|ENSMUSG00000024431.8|nuclear receptor subfamily 3, group C, member 1
mm10_v2_chr7_+_110627650_110627669	0.0146679	AAUGCCC	ENSMUST00000033054.8|Adm|ENSMUSG00000030790.8|adrenomedullin
mm10_v2_chr11_+_88047693_88047727	0.0146098	AAUGCCC	ENSMUST00000079866.4|Srsf1|ENSMUSG00000018379.11|serine/arginine-rich splicing factor 1
mm10_v2_chr2_+_18677002_18677053	0.0143535	AAUGCCC	ENSMUST00000028071.6|Bmi1|ENSMUSG00000026739.7|Bmi1 polycomb ring finger oncogene
mm10_v2_chr11_-_119228461_119228504	0.0133912	AAUGCCC	ENSMUST00000036113.3|Tbc1d16|ENSMUSG00000039976.3|TBC1 domain family, member 16
mm10_v2_chr19_-_46045194_46045222	0.0124823	AAUGCCC	ENSMUST00000156585.1|Ldb1|ENSMUSG00000025223.8|LIM domain binding 1 	ENSMUST00000152946.1|Ldb1|ENSMUSG00000025223.8|LIM domain binding 1
mm10_v2_chr12_+_111166349_111166397	0.0124677	AAUGCCC	ENSMUST00000117269.1|Traf3|ENSMUSG00000021277.10|TNF receptor-associated factor 3
mm10_v2_chr10_-_91171525_91171610	0.0123869	AAUGCCC	ENSMUST00000072239.7|Tmpo|ENSMUSG00000019961.10|thymopoietin 	ENSMUST00000092219.6|Tmpo|ENSMUSG00000019961.10|thymopoietin 	ENSMUST00000099355.4|Tmpo|ENSMUSG00000019961.10|thymopoietin 	ENSMUST00000105293.3|Tmpo|ENSMUSG00000019961.10|thymopoietin 	ENSMUST00000020123.5|Tmpo|ENSMUSG00000019961.10|thymopoietin
mm10_v2_chr9_+_106170918_106170953	0.0107967	AAUGCCC	ENSMUST00000020490.5|Wdr82|ENSMUSG00000020257.6|WD repeat domain containing 82
mm10_v2_chr10_+_106470281_106470367	0.0102439	AAUGCCC	ENSMUST00000029404.9|Ppfia2|ENSMUSG00000053825.8|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENSMUST00000169303.1|Ppfia2|ENSMUSG00000053825.8|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
mm10_v2_chr18_-_77713978_77714010	0.0101034	AAUGCCC	ENSMUST00000074653.4|8030462N17Rik|ENSMUSG00000047466.9|RIKEN cDNA 8030462N17 gene
mm10_v2_chr4_-_19708922_19709004	0.00976679	AAUGCCC	ENSMUST00000108246.2|Wwp1|ENSMUSG00000041058.9|WW domain containing E3 ubiquitin protein ligase 1
mm10_v2_chr5_-_106696819_106696839	0.0096654	AAUGCCC	ENSMUST00000127434.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000112696.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000112698.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644
mm10_v2_chr8_+_88521344_88521371	0.00896692	AAUGCCC	ENSMUST00000034086.5|Nkd1|ENSMUSG00000031661.5|naked cuticle 1 homolog (Drosophila)
mm10_v2_chr4_+_127021311_127021339	0.00886978	AAUGCCC	ENSMUST00000030623.7|Sfpq|ENSMUSG00000028820.7|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
mm10_v2_chr2_-_48949206_48949276	0.00842102	AAUGCCC	ENSMUST00000090976.3|Orc4|ENSMUSG00000026761.6|origin recognition complex, subunit 4 	ENSMUST00000149679.1|Orc4|ENSMUSG00000026761.6|origin recognition complex, subunit 4 	ENSMUST00000028098.4|Orc4|ENSMUSG00000026761.6|origin recognition complex, subunit 4
mm10_v2_chr15_+_6708372_6708396	0.00832765	AAUGCCC	ENSMUST00000061656.6|Rictor|ENSMUSG00000050310.8|RPTOR independent companion of MTOR, complex 2
mm10_v2_chr2_+_109890846_109890882	0.00812092	AAUGCCC	ENSMUST00000028583.7|Lin7c|ENSMUSG00000027162.7|lin-7 homolog C (C. elegans)
mm10_v2_chr12_-_73047179_73047179	0.0068686	AAUGCCC	ENSMUST00000050029.7|Six1|ENSMUSG00000051367.8|sine oculis-related homeobox 1
mm10_v2_chr1_-_171150588_171150609	0.00576978	AAUGCCC	ENSMUST00000155798.1|Sdhc|ENSMUSG00000058076.6|succinate dehydrogenase complex, subunit C, integral membrane protein 	ENSMUST00000081560.4|Sdhc|ENSMUSG00000058076.6|succinate dehydrogenase complex, subunit C, integral membrane protein 	ENSMUST00000111336.3|Sdhc|ENSMUSG00000058076.6|succinate dehydrogenase complex, subunit C, integral membrane protein
mm10_v2_chr19_-_31765027_31765079	0.00553549	AAUGCCC	ENSMUST00000065067.6|Prkg1|ENSMUSG00000052920.8|protein kinase, cGMP-dependent, type I
mm10_v2_chr12_-_56535047_56535106	0.005475	AAUGCCC	ENSMUST00000178477.2|Nkx2-1|ENSMUSG00000001496.9|NK2 homeobox 1
mm10_v2_chr15_+_58933774_58933836	0.00540368	AAUGCCC	ENSMUST00000022980.3|Ndufb9|ENSMUSG00000022354.3|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9
mm10_v2_chr8_+_90828820_90828842	0.0053506	AAUGCCC	ENSMUST00000109614.2|Chd9|ENSMUSG00000056608.7|chromodomain helicase DNA binding protein 9 	ENSMUST00000048665.6|Chd9|ENSMUSG00000056608.7|chromodomain helicase DNA binding protein 9
mm10_v2_chr16_+_21891969_21891969	0.0052968	AAUGCCC	ENSMUST00000042065.6|Map3k13|ENSMUSG00000033618.6|mitogen-activated protein kinase kinase kinase 13
mm10_v2_chr4_-_82505749_82505802	0.00485549	AAUGCCC	ENSMUST00000107245.2|Nfib|ENSMUSG00000008575.11|nuclear factor I/B 	ENSMUST00000107246.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr16_+_33380765_33380787	0.00464495	AAUGCCC	ENSMUST00000165418.1|Zfp148|ENSMUSG00000022811.10|zinc finger protein 148
mm10_v2_chr1_+_178798438_178798467	0.00441501	AAUGCCC	ENSMUST00000160789.1|Kif26b|ENSMUSG00000026494.6|kinesin family member 26B
mm10_v2_chr1_+_74506044_74506105	0.00324807	AAUGCCC	ENSMUST00000087215.5|Rqcd1|ENSMUSG00000026174.8|rcd1 (required for cell differentiation) homolog 1 (S. pombe)
mm10_v2_chr6_+_53573364_53573394	0.0032292	AAUGCCC	ENSMUST00000047450.7|Creb5|ENSMUSG00000053007.6|cAMP responsive element binding protein 5
mm10_v2_chr17_+_87107621_87107684	0.00311316	AAUGCCC	ENSMUST00000041369.6|Socs5|ENSMUSG00000037104.8|suppressor of cytokine signaling 5
mm10_v2_chr17_+_3326552_3326585	0.00269665	AAUGCCC	ENSMUST00000169838.1|Tiam2|ENSMUSG00000023800.8|T cell lymphoma invasion and metastasis 2
mm10_v2_chr11_-_53423123_53423170	0.00254118	AAUGCCC	ENSMUST00000036045.5|Leap2|ENSMUSG00000036216.5|liver-expressed antimicrobial peptide 2
mm10_v2_chr8_+_14095849_14095915	0.00252778	AAUGCCC	ENSMUST00000152652.1|Dlgap2|ENSMUSG00000047495.9|discs, large (Drosophila) homolog-associated protein 2 	ENSMUST00000133298.1|Dlgap2|ENSMUSG00000047495.9|discs, large (Drosophila) homolog-associated protein 2
mm10_v2_chr10_+_88885992_88886010	0.00246827	AAUGCCC	ENSMUST00000020255.6|Slc5a8|ENSMUSG00000020062.6|solute carrier family 5 (iodide transporter), member 8
mm10_v2_chr3_-_119783262_119783388	0.00224221	AAUGCCC	ENSMUST00000029780.7|Ptbp2|ENSMUSG00000028134.7|polypyrimidine tract binding protein 2
mm10_v2_chr15_-_98871175_98871204	0.00199781	AAUGCCC	ENSMUST00000178486.2|Kmt2d|ENSMUSG00000048154.10|lysine (K)-specific methyltransferase 2D 	ENSMUST00000023741.9|Kmt2d|ENSMUSG00000048154.10|lysine (K)-specific methyltransferase 2D
mm10_v2_chr5_-_120588613_120588651	0.00179647	AAUGCCC	ENSMUST00000046426.8|Tpcn1|ENSMUSG00000032741.8|two pore channel 1
mm10_v2_chr8_+_111536492_111536640	0.001557	AAUGCCC	ENSMUST00000168428.1|Znrf1|ENSMUSG00000033545.8|zinc and ring finger 1 	ENSMUST00000171182.1|Znrf1|ENSMUSG00000033545.8|zinc and ring finger 1
mm10_v2_chr14_-_39472825_39473088	0.00109745	AAUGCCC	ENSMUST00000168810.2|Nrg3|ENSMUSG00000041014.11|neuregulin 3 	ENSMUST00000173780.1|Nrg3|ENSMUSG00000041014.11|neuregulin 3 	ENSMUST00000166968.2|Nrg3|ENSMUSG00000041014.11|neuregulin 3
mm10_v2_chr4_+_132638987_132639118	0.00103915	AAUGCCC	ENSMUST00000135299.1|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila) 	ENSMUST00000081726.6|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila) 	ENSMUST00000180250.1|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila) 	ENSMUST00000020197.7|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila) 	ENSMUST00000079157.4|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila)
mm10_v2_chr10_+_53596936_53597004	0.000711082	AAUGCCC	ENSMUST00000020004.6|Asf1a|ENSMUSG00000019857.6|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)
mm10_v2_chr11_+_77982710_77982823	0.000449324	AAUGCCC	ENSMUST00000108360.1|Phf12|ENSMUSG00000037791.9|PHD finger protein 12 	ENSMUST00000049167.7|Phf12|ENSMUSG00000037791.9|PHD finger protein 12
mm10_v2_chr9_-_71592346_71592372	0.000283523	AAUGCCC	ENSMUST00000093823.1|Myzap|ENSMUSG00000041361.7|myocardial zonula adherens protein
mm10_v2_chr5_+_144100387_144100436	0.000236568	AAUGCCC	ENSMUST00000041804.7|Lmtk2|ENSMUSG00000038970.7|lemur tyrosine kinase 2
