mm10_v2_chr3_-_73056943_73056943	0.706901	AUGGCAC	ENSMUST00000059407.7|Slitrk3|ENSMUSG00000048304.7|SLIT and NTRK-like family, member 3
mm10_v2_chr14_+_45351473_45351473	0.531745	AUGGCAC	ENSMUST00000111835.2|Styx|ENSMUSG00000053205.8|serine/threonine/tyrosine interaction protein
mm10_v2_chr2_+_31245801_31245900	0.404344	AUGGCAC	ENSMUST00000000199.7|Ncs1|ENSMUSG00000062661.6|neuronal calcium sensor 1
mm10_v2_chr2_+_153031852_153032014	0.383895	AUGGCAC	ENSMUST00000037235.6|Xkr7|ENSMUSG00000042631.7|X Kell blood group precursor related family member 7 homolog
mm10_v2_chr12_-_98577940_98578046	0.378759	AUGGCAC	ENSMUST00000110113.1|Kcnk10|ENSMUSG00000033854.9|potassium channel, subfamily K, member 10
mm10_v2_chr13_-_63565520_63565520	0.334249	AUGGCAC	ENSMUST00000021921.5|Ptch1|ENSMUSG00000021466.6|patched homolog 1
mm10_v2_chr13_+_12395362_12395415	0.313777	AUGGCAC	ENSMUST00000059270.8|Heatr1|ENSMUSG00000050244.8|HEAT repeat containing 1
mm10_v2_chr11_-_87359011_87359081	0.24088	AUGGCAC	ENSMUST00000055438.4|Ppm1e|ENSMUSG00000046442.4|protein phosphatase 1E (PP2C domain containing)
mm10_v2_chr3_+_90341654_90341654	0.238209	AUGGCAC	ENSMUST00000049382.4|Gatad2b|ENSMUSG00000042390.5|GATA zinc finger domain containing 2B
mm10_v2_chr15_+_4375462_4375511	0.237017	AUGGCAC	ENSMUST00000061925.4|Plcxd3|ENSMUSG00000049148.8|phosphatidylinositol-specific phospholipase C, X domain containing 3
mm10_v2_chr17_+_83350925_83350998	0.2302	AUGGCAC	ENSMUST00000096766.4|Eml4|ENSMUSG00000032624.9|echinoderm microtubule associated protein like 4 	ENSMUST00000112363.2|Eml4|ENSMUSG00000032624.9|echinoderm microtubule associated protein like 4 	ENSMUST00000049503.8|Eml4|ENSMUSG00000032624.9|echinoderm microtubule associated protein like 4
mm10_v2_chr1_-_119837613_119837673	0.225454	AUGGCAC	ENSMUST00000064091.5|Ptpn4|ENSMUSG00000026384.7|protein tyrosine phosphatase, non-receptor type 4
mm10_v2_chr17_+_88440711_88440741	0.221369	AUGGCAC	ENSMUST00000112238.2|Foxn2|ENSMUSG00000034998.12|forkhead box N2 	ENSMUST00000155640.1|Foxn2|ENSMUSG00000034998.12|forkhead box N2
mm10_v2_chr9_+_64235201_64235201	0.220657	AUGGCAC	ENSMUST00000039011.3|Uchl4|ENSMUSG00000035337.3|ubiquitin carboxyl-terminal esterase L4
mm10_v2_chr11_-_45944910_45944960	0.212468	AUGGCAC	ENSMUST00000129820.1|Lsm11|ENSMUSG00000044847.7|U7 snRNP-specific Sm-like protein LSM11
mm10_v2_chr14_-_67072465_67072476	0.204982	AUGGCAC	ENSMUST00000089230.5|Ppp2r2a|ENSMUSG00000022052.8|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform
mm10_v2_chr6_+_140424086_140424138	0.197896	AUGGCAC	ENSMUST00000087622.3|Plekha5|ENSMUSG00000030231.8|pleckstrin homology domain containing, family A member 5
mm10_v2_chr19_-_55315980_55316038	0.191252	AUGGCAC	ENSMUST00000076891.5|Zdhhc6|ENSMUSG00000024982.9|zinc finger, DHHC domain containing 6
mm10_v2_chr14_+_101653967_101654048	0.188594	AUGGCAC	ENSMUST00000002289.6|Uchl3|ENSMUSG00000022111.8|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)
mm10_v2_chr13_-_100552442_100552498	0.188229	AUGGCAC	ENSMUST00000159515.1|Ocln|ENSMUSG00000021638.6|occludin 	ENSMUST00000160859.1|Ocln|ENSMUSG00000021638.6|occludin 	ENSMUST00000069756.4|Ocln|ENSMUSG00000021638.6|occludin
mm10_v2_chr7_-_80115294_80115392	0.187548	AUGGCAC	ENSMUST00000107384.3|Idh2|ENSMUSG00000030541.10|isocitrate dehydrogenase 2 (NADP+), mitochondrial
mm10_v2_chr8_-_31918203_31918368	0.186571	AUGGCAC	ENSMUST00000073884.4|Nrg1|ENSMUSG00000062991.6|neuregulin 1
mm10_v2_chr18_-_74064899_74064943	0.184756	AUGGCAC	ENSMUST00000159162.1|Mapk4|ENSMUSG00000024558.6|mitogen-activated protein kinase 4 	ENSMUST00000091851.3|Mapk4|ENSMUSG00000024558.6|mitogen-activated protein kinase 4
mm10_v2_chr2_+_65620829_65620857	0.183049	AUGGCAC	ENSMUST00000028377.7|Scn2a1|ENSMUSG00000075318.6|sodium channel, voltage-gated, type II, alpha 1
mm10_v2_chr15_-_82244716_82244755	0.179614	AUGGCAC	ENSMUST00000089155.4|Cenpm|ENSMUSG00000068101.4|centromere protein M 	ENSMUST00000089157.3|Cenpm|ENSMUSG00000068101.4|centromere protein M
mm10_v2_chr16_-_30388530_30388530	0.177473	AUGGCAC	ENSMUST00000100013.2|Atp13a3|ENSMUSG00000022533.7|ATPase type 13A3 	ENSMUST00000061350.6|Atp13a3|ENSMUSG00000022533.7|ATPase type 13A3
mm10_v2_chr11_+_76202007_76202030	0.173583	AUGGCAC	ENSMUST00000094014.3|Fam57a|ENSMUSG00000069808.7|family with sequence similarity 57, member A
mm10_v2_chr18_+_69345721_69345811	0.172991	AUGGCAC	ENSMUST00000078486.6|Tcf4|ENSMUSG00000053477.9|transcription factor 4 	ENSMUST00000114982.1|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr2_-_65567465_65567495	0.171909	AUGGCAC	ENSMUST00000066432.5|Scn3a|ENSMUSG00000057182.8|sodium channel, voltage-gated, type III, alpha
mm10_v2_chr12_-_108003594_108003613	0.164349	AUGGCAC	ENSMUST00000066060.4|Bcl11b|ENSMUSG00000048251.9|B cell leukemia/lymphoma 11B
mm10_v2_chr2_+_152226839_152226908	0.161431	AUGGCAC	ENSMUST00000099224.3|Csnk2a1|ENSMUSG00000074698.4|casein kinase 2, alpha 1 polypeptide 	ENSMUST00000124791.1|Csnk2a1|ENSMUSG00000074698.4|casein kinase 2, alpha 1 polypeptide 	ENSMUST00000133119.1|Csnk2a1|ENSMUSG00000074698.4|casein kinase 2, alpha 1 polypeptide
mm10_v2_chr12_-_69724830_69724885	0.158995	AUGGCAC	ENSMUST00000021370.8|L2hgdh|ENSMUSG00000020988.8|L-2-hydroxyglutarate dehydrogenase
mm10_v2_chr14_+_56887795_56887795	0.156762	AUGGCAC	ENSMUST00000022511.8|Zmym2|ENSMUSG00000021945.8|zinc finger, MYM-type 2
mm10_v2_chr10_-_40302186_40302206	0.155112	AUGGCAC	ENSMUST00000099945.4|Amd1|ENSMUSG00000075232.4|S-adenosylmethionine decarboxylase 1
mm10_v2_chr9_-_72111827_72111895	0.154456	AUGGCAC	ENSMUST00000183404.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12 	ENSMUST00000184783.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr6_+_141249161_141249269	0.152169	AUGGCAC	ENSMUST00000043259.7|Pde3a|ENSMUSG00000041741.8|phosphodiesterase 3A, cGMP inhibited
mm10_v2_chr7_-_45824750_45824761	0.1481	AUGGCAC	ENSMUST00000071937.5|Kcnj14|ENSMUSG00000058743.5|potassium inwardly-rectifying channel, subfamily J, member 14
mm10_v2_chr12_-_64965496_64965538	0.147509	AUGGCAC	ENSMUST00000021331.7|Klhl28|ENSMUSG00000020948.8|kelch-like 28
mm10_v2_chr15_-_73184840_73184971	0.145109	AUGGCAC	ENSMUST00000044113.10|Ago2|ENSMUSG00000036698.10|argonaute RISC catalytic subunit 2
mm10_v2_chr14_-_31830402_31830440	0.144306	AUGGCAC	ENSMUST00000014640.7|Ankrd28|ENSMUSG00000014496.7|ankyrin repeat domain 28
mm10_v2_chr2_-_20968881_20968957	0.142956	AUGGCAC	ENSMUST00000114594.1|Arhgap21|ENSMUSG00000036591.9|Rho GTPase activating protein 21
mm10_v2_chr12_+_40446050_40446099	0.139968	AUGGCAC	ENSMUST00000037488.6|Dock4|ENSMUSG00000035954.9|dedicator of cytokinesis 4
mm10_v2_chr9_-_40346290_40346337	0.138361	AUGGCAC	ENSMUST00000121357.1|Gramd1b|ENSMUSG00000040111.8|GRAM domain containing 1B
mm10_v2_chr13_-_107022027_107022138	0.135017	AUGGCAC	ENSMUST00000117539.1|Kif2a|ENSMUSG00000021693.13|kinesin family member 2A 	ENSMUST00000122233.1|Kif2a|ENSMUSG00000021693.13|kinesin family member 2A 	ENSMUST00000022204.9|Kif2a|ENSMUSG00000021693.13|kinesin family member 2A 	ENSMUST00000159772.1|Kif2a|ENSMUSG00000021693.13|kinesin family member 2A
mm10_v2_chr16_+_34690548_34690616	0.132323	AUGGCAC	ENSMUST00000023532.6|Ccdc14|ENSMUSG00000022833.6|coiled-coil domain containing 14
mm10_v2_chr14_-_46822232_46822266	0.128252	AUGGCAC	ENSMUST00000111817.1|Gmfb|ENSMUSG00000062014.6|glia maturation factor, beta 	ENSMUST00000079314.5|Gmfb|ENSMUSG00000062014.6|glia maturation factor, beta
mm10_v2_chr10_-_89686250_89686306	0.127071	AUGGCAC	ENSMUST00000092227.5|Scyl2|ENSMUSG00000069539.5|SCY1-like 2 (S. cerevisiae) 	ENSMUST00000174252.1|Scyl2|ENSMUSG00000069539.5|SCY1-like 2 (S. cerevisiae)
mm10_v2_chr12_-_100520778_100520853	0.126076	AUGGCAC	ENSMUST00000062957.6|Ttc7b|ENSMUSG00000033530.7|tetratricopeptide repeat domain 7B
mm10_v2_chr5_-_96161990_96162097	0.120506	AUGGCAC	ENSMUST00000155901.1|Cnot6l|ENSMUSG00000034724.11|CCR4-NOT transcription complex, subunit 6-like
mm10_v2_chr5_+_24452177_24452177	0.117273	AUGGCAC	ENSMUST00000024123.4|Agap3|ENSMUSG00000023353.9|ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
mm10_v2_chr5_-_128953303_128953362	0.117261	AUGGCAC	ENSMUST00000111346.1|Rimbp2|ENSMUSG00000029420.8|RIMS binding protein 2
mm10_v2_chr11_-_88718223_88718294	0.112879	AUGGCAC	ENSMUST00000107909.1|Msi2|ENSMUSG00000069769.7|musashi RNA-binding protein 2
mm10_v2_chr8_+_83900096_83900110	0.112158	AUGGCAC	ENSMUST00000141158.1|Lphn1|ENSMUSG00000013033.10|latrophilin 1
mm10_v2_chr1_+_130717320_130717333	0.111932	AUGGCAC	ENSMUST00000049813.4|Yod1|ENSMUSG00000046404.4|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)
mm10_v2_chr9_+_75037614_75037701	0.111643	AUGGCAC	ENSMUST00000168166.1|Arpp19|ENSMUSG00000007656.7|cAMP-regulated phosphoprotein 19 	ENSMUST00000169492.1|Arpp19|ENSMUSG00000007656.7|cAMP-regulated phosphoprotein 19 	ENSMUST00000170308.1|Arpp19|ENSMUSG00000007656.7|cAMP-regulated phosphoprotein 19
mm10_v2_chrX_+_94367147_94367183	0.111346	AUGGCAC	ENSMUST00000113897.2|Apoo|ENSMUSG00000079508.2|apolipoprotein O 	ENSMUST00000113896.1|Apoo|ENSMUSG00000079508.2|apolipoprotein O 	ENSMUST00000113895.1|Apoo|ENSMUSG00000079508.2|apolipoprotein O
mm10_v2_chr7_+_16130285_16130333	0.107669	AUGGCAC	ENSMUST00000168693.1|Slc8a2|ENSMUSG00000030376.7|solute carrier family 8 (sodium/calcium exchanger), member 2
mm10_v2_chr17_-_17624458_17624496	0.102863	AUGGCAC	ENSMUST00000041047.2|Lnpep|ENSMUSG00000023845.6|leucyl/cystinyl aminopeptidase
mm10_v2_chr12_+_29528382_29528468	0.102019	AUGGCAC	ENSMUST00000049784.9|Myt1l|ENSMUSG00000061911.8|myelin transcription factor 1-like
mm10_v2_chr11_+_77686155_77686179	0.101761	AUGGCAC	ENSMUST00000100802.4|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2 	ENSMUST00000181023.1|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2
mm10_v2_chr2_-_140671462_140671476	0.0995188	AUGGCAC	ENSMUST00000110057.2|Flrt3|ENSMUSG00000051379.6|fibronectin leucine rich transmembrane protein 3
mm10_v2_chr11_-_120598346_120598405	0.0958337	AUGGCAC	ENSMUST00000026125.2|Alyref|ENSMUSG00000025134.2|Aly/REF export factor
mm10_v2_chr4_+_13743424_13743478	0.0949056	AUGGCAC	ENSMUST00000006761.3|Runx1t1|ENSMUSG00000006586.9|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm10_v2_chr18_-_39490649_39490717	0.0905844	AUGGCAC	ENSMUST00000115567.1|Nr3c1|ENSMUSG00000024431.8|nuclear receptor subfamily 3, group C, member 1
mm10_v2_chr1_-_155417283_155417323	0.0895409	AUGGCAC	ENSMUST00000027741.5|Xpr1|ENSMUSG00000026469.8|xenotropic and polytropic retrovirus receptor 1
mm10_v2_chr6_-_134566913_134566995	0.089349	AUGGCAC	ENSMUST00000032322.8|Lrp6|ENSMUSG00000030201.9|low density lipoprotein receptor-related protein 6
mm10_v2_chr10_-_62880014_62880014	0.0855862	AUGGCAC	ENSMUST00000050826.7|Tet1|ENSMUSG00000047146.9|tet methylcytosine dioxygenase 1
mm10_v2_chr3_+_31095052_31095125	0.0854007	AUGGCAC	ENSMUST00000118470.1|Skil|ENSMUSG00000027660.10|SKI-like 	ENSMUST00000029194.5|Skil|ENSMUSG00000027660.10|SKI-like 	ENSMUST00000123532.1|Skil|ENSMUSG00000027660.10|SKI-like 	ENSMUST00000117728.1|Skil|ENSMUSG00000027660.10|SKI-like
mm10_v2_chr14_+_103650208_103650243	0.0853319	AUGGCAC	ENSMUST00000069443.7|Slain1|ENSMUSG00000055717.7|SLAIN motif family, member 1
mm10_v2_chr3_+_30995747_30995868	0.0848616	AUGGCAC	ENSMUST00000108249.2|Prkci|ENSMUSG00000037643.8|protein kinase C, iota
mm10_v2_chr15_+_54571358_54571439	0.0845832	AUGGCAC	ENSMUST00000025356.2|Mal2|ENSMUSG00000024479.2|mal, T cell differentiation protein 2
mm10_v2_chr14_-_78725089_78725089	0.0776836	AUGGCAC	ENSMUST00000074729.5|Dgkh|ENSMUSG00000034731.9|diacylglycerol kinase, eta
mm10_v2_chrX_-_57393020_57393040	0.0775726	AUGGCAC	ENSMUST00000143310.1|Rbmx|ENSMUSG00000031134.10|RNA binding motif protein, X chromosome 	ENSMUST00000098470.2|Rbmx|ENSMUSG00000031134.10|RNA binding motif protein, X chromosome 	ENSMUST00000114726.1|Rbmx|ENSMUSG00000031134.10|RNA binding motif protein, X chromosome
mm10_v2_chr18_+_5591860_5591902	0.0756376	AUGGCAC	ENSMUST00000025081.5|Zeb1|ENSMUSG00000024238.7|zinc finger E-box binding homeobox 1 	ENSMUST00000159390.1|Zeb1|ENSMUSG00000024238.7|zinc finger E-box binding homeobox 1
mm10_v2_chr18_-_61536522_61536558	0.0736913	AUGGCAC	ENSMUST00000171629.1|Arhgef37|ENSMUSG00000045094.7|Rho guanine nucleotide exchange factor (GEF) 37
mm10_v2_chr19_-_10304867_10304954	0.0731097	AUGGCAC	ENSMUST00000039327.4|Dagla|ENSMUSG00000035735.4|diacylglycerol lipase, alpha
mm10_v2_chr2_+_18677002_18677053	0.0724881	AUGGCAC	ENSMUST00000028071.6|Bmi1|ENSMUSG00000026739.7|Bmi1 polycomb ring finger oncogene
mm10_v2_chr7_-_73541738_73541758	0.0703975	AUGGCAC	ENSMUST00000169922.2|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr9_+_78113275_78113346	0.0699789	AUGGCAC	ENSMUST00000009972.5|Ick|ENSMUSG00000009828.9|intestinal cell kinase 	ENSMUST00000117330.1|Ick|ENSMUSG00000009828.9|intestinal cell kinase 	ENSMUST00000044551.7|Ick|ENSMUSG00000009828.9|intestinal cell kinase
mm10_v2_chr2_-_153241402_153241426	0.0677081	AUGGCAC	ENSMUST00000056924.7|Plagl2|ENSMUSG00000051413.11|pleiomorphic adenoma gene-like 2
mm10_v2_chr10_-_91171525_91171610	0.0673846	AUGGCAC	ENSMUST00000072239.7|Tmpo|ENSMUSG00000019961.10|thymopoietin 	ENSMUST00000092219.6|Tmpo|ENSMUSG00000019961.10|thymopoietin 	ENSMUST00000099355.4|Tmpo|ENSMUSG00000019961.10|thymopoietin 	ENSMUST00000105293.3|Tmpo|ENSMUSG00000019961.10|thymopoietin 	ENSMUST00000020123.5|Tmpo|ENSMUSG00000019961.10|thymopoietin
mm10_v2_chr18_-_10181792_10181792	0.0651528	AUGGCAC	ENSMUST00000067947.5|Rock1|ENSMUSG00000024290.8|Rho-associated coiled-coil containing protein kinase 1
mm10_v2_chrX_-_143933204_143933311	0.0651449	AUGGCAC	ENSMUST00000112851.1|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000112856.2|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000033642.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr8_+_128685654_128685782	0.0644104	AUGGCAC	ENSMUST00000090006.5|Itgb1|ENSMUSG00000025809.9|integrin beta 1 (fibronectin receptor beta)
mm10_v2_chr2_-_92392634_92392731	0.0638997	AUGGCAC	ENSMUST00000111279.2|Mapk8ip1|ENSMUSG00000027223.9|mitogen-activated protein kinase 8 interacting protein 1
mm10_v2_chr13_+_104817171_104817223	0.059606	AUGGCAC	ENSMUST00000022230.8|Srek1ip1|ENSMUSG00000021716.8|splicing regulatory glutamine/lysine-rich protein 1interacting protein 1
mm10_v2_chr4_-_34882919_34882964	0.0584682	AUGGCAC	ENSMUST00000098163.2|Zfp292|ENSMUSG00000039967.8|zinc finger protein 292 	ENSMUST00000047950.5|Zfp292|ENSMUSG00000039967.8|zinc finger protein 292
mm10_v2_chr9_+_65908967_65909020	0.0573782	AUGGCAC	ENSMUST00000034949.3|Csnk1g1|ENSMUSG00000032384.9|casein kinase 1, gamma 1 	ENSMUST00000154589.1|Csnk1g1|ENSMUSG00000032384.9|casein kinase 1, gamma 1
mm10_v2_chrX_-_51018011_51018032	0.056062	AUGGCAC	ENSMUST00000053593.7|Rap2c|ENSMUSG00000050029.7|RAP2C, member of RAS oncogene family
mm10_v2_chr8_+_94772009_94772009	0.0539521	AUGGCAC	ENSMUST00000034230.5|Cx3cl1|ENSMUSG00000031778.6|chemokine (C-X3-C motif) ligand 1
mm10_v2_chr2_+_59160884_59161008	0.0518576	AUGGCAC	ENSMUST00000037903.8|Pkp4|ENSMUSG00000026991.14|plakophilin 4
mm10_v2_chr19_-_32388462_32388512	0.0514129	AUGGCAC	ENSMUST00000099514.3|Sgms1|ENSMUSG00000040451.11|sphingomyelin synthase 1
mm10_v2_chr2_-_33431324_33431324	0.0511655	AUGGCAC	ENSMUST00000113158.1|Zbtb34|ENSMUSG00000068966.4|zinc finger and BTB domain containing 34
mm10_v2_chr8_-_106337987_106337996	0.0507279	AUGGCAC	ENSMUST00000067512.7|Smpd3|ENSMUSG00000031906.8|sphingomyelin phosphodiesterase 3, neutral
mm10_v2_chr10_+_95940663_95940703	0.0498487	AUGGCAC	ENSMUST00000053484.6|Eea1|ENSMUSG00000036499.8|early endosome antigen 1
mm10_v2_chr9_+_108662098_108662219	0.0489597	AUGGCAC	ENSMUST00000035222.5|Slc25a20|ENSMUSG00000032602.5|solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20
mm10_v2_chr1_+_163929765_163929809	0.0482332	AUGGCAC	ENSMUST00000027876.4|Scyl3|ENSMUSG00000026584.8|SCY1-like 3 (S. cerevisiae) 	ENSMUST00000170359.1|Scyl3|ENSMUSG00000026584.8|SCY1-like 3 (S. cerevisiae)
mm10_v2_chr2_-_57114970_57115038	0.0476187	AUGGCAC	ENSMUST00000028166.2|Nr4a2|ENSMUSG00000026826.7|nuclear receptor subfamily 4, group A, member 2
mm10_v2_chr15_+_44428073_44428174	0.0464305	AUGGCAC	ENSMUST00000060652.3|Eny2|ENSMUSG00000022338.6|enhancer of yellow 2 homolog (Drosophila)
mm10_v2_chr13_-_98815408_98815449	0.0457358	AUGGCAC	ENSMUST00000040340.8|Fcho2|ENSMUSG00000041685.9|FCH domain only 2 	ENSMUST00000099277.4|Fcho2|ENSMUSG00000041685.9|FCH domain only 2 	ENSMUST00000179563.1|Fcho2|ENSMUSG00000041685.9|FCH domain only 2 	ENSMUST00000109403.1|Fcho2|ENSMUSG00000041685.9|FCH domain only 2
mm10_v2_chr9_-_45955226_45955250	0.0436755	AUGGCAC	ENSMUST00000038488.9|Sidt2|ENSMUSG00000034908.9|SID1 transmembrane family, member 2
mm10_v2_chr4_-_58912678_58912776	0.0433964	AUGGCAC	ENSMUST00000144512.1|AI314180|ENSMUSG00000050812.12|expressed sequence AI314180 	ENSMUST00000102889.3|AI314180|ENSMUSG00000050812.12|expressed sequence AI314180 	ENSMUST00000055822.8|AI314180|ENSMUSG00000050812.12|expressed sequence AI314180
mm10_v2_chr18_+_76944384_76944444	0.0424565	AUGGCAC	ENSMUST00000156454.1|Hdhd2|ENSMUSG00000025421.8|haloacid dehalogenase-like hydrolase domain containing 2 	ENSMUST00000150990.1|Hdhd2|ENSMUSG00000025421.8|haloacid dehalogenase-like hydrolase domain containing 2 	ENSMUST00000026485.7|Hdhd2|ENSMUSG00000025421.8|haloacid dehalogenase-like hydrolase domain containing 2 	ENSMUST00000148955.1|Hdhd2|ENSMUSG00000025421.8|haloacid dehalogenase-like hydrolase domain containing 2
mm10_v2_chr13_-_74317234_74317326	0.0424329	AUGGCAC	ENSMUST00000022060.5|Pdcd6|ENSMUSG00000021576.5|programmed cell death 6
mm10_v2_chr1_-_189343704_189343832	0.0400489	AUGGCAC	ENSMUST00000180044.1|Kcnk2|ENSMUSG00000037624.9|potassium channel, subfamily K, member 2 	ENSMUST00000110920.1|Kcnk2|ENSMUSG00000037624.9|potassium channel, subfamily K, member 2
mm10_v2_chr7_-_116038734_116038750	0.0399999	AUGGCAC	ENSMUST00000166877.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr11_-_22982090_22982382	0.0386824	AUGGCAC	ENSMUST00000160826.1|RP23-242C19.7|ENSMUSG00000098650.1|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 (B3gnt2), transcript variant 2, mRNA 	ENSMUST00000093270.5|Commd1|ENSMUSG00000051355.12|COMM domain containing 1 	ENSMUST00000071068.8|Commd1|ENSMUSG00000051355.12|COMM domain containing 1 	ENSMUST00000159081.1|Commd1|ENSMUSG00000051355.12|COMM domain containing 1
mm10_v2_chr11_+_57518657_57518722	0.0373402	AUGGCAC	ENSMUST00000108849.1|Mfap3|ENSMUSG00000020522.7|microfibrillar-associated protein 3 	ENSMUST00000020830.7|Mfap3|ENSMUSG00000020522.7|microfibrillar-associated protein 3
mm10_v2_chr18_+_35598607_35598653	0.0372548	AUGGCAC	ENSMUST00000041314.8|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2 	ENSMUST00000115737.1|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2 	ENSMUST00000115736.1|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2 	ENSMUST00000115735.1|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2
mm10_v2_chr1_-_82291370_82291416	0.0371986	AUGGCAC	ENSMUST00000069799.2|Irs1|ENSMUSG00000055980.2|insulin receptor substrate 1
mm10_v2_chr2_+_76675265_76675287	0.036361	AUGGCAC	ENSMUST00000111920.1|Plekha3|ENSMUSG00000002733.8|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3
mm10_v2_chr11_+_96316684_96316684	0.0362131	AUGGCAC	ENSMUST00000049241.7|Hoxb4|ENSMUSG00000038692.7|homeobox B4
mm10_v2_chr12_+_113098199_113098323	0.0340638	AUGGCAC	ENSMUST00000009099.6|Mta1|ENSMUSG00000021144.8|metastasis associated 1 	ENSMUST00000109723.1|Mta1|ENSMUSG00000021144.8|metastasis associated 1 	ENSMUST00000109726.1|Mta1|ENSMUSG00000021144.8|metastasis associated 1 	ENSMUST00000109727.2|Mta1|ENSMUSG00000021144.8|metastasis associated 1 	ENSMUST00000069690.4|Mta1|ENSMUSG00000021144.8|metastasis associated 1
mm10_v2_chr8_-_25840755_25840794	0.0340461	AUGGCAC	ENSMUST00000068892.7|Ash2l|ENSMUSG00000031575.11|ash2 (absent, small, or homeotic)-like (Drosophila)
mm10_v2_chr4_+_53440516_53440684	0.0337729	AUGGCAC	ENSMUST00000107651.2|Slc44a1|ENSMUSG00000028412.11|solute carrier family 44, member 1 	ENSMUST00000107647.1|Slc44a1|ENSMUSG00000028412.11|solute carrier family 44, member 1
mm10_v2_chr1_+_58393119_58393147	0.0331153	AUGGCAC	ENSMUST00000050552.8|Bzw1|ENSMUSG00000051223.8|basic leucine zipper and W2 domains 1
mm10_v2_chr3_+_16183177_16183206	0.0328713	AUGGCAC	ENSMUST00000108345.2|Ythdf3|ENSMUSG00000047213.8|YTH domain family 3 	ENSMUST00000108346.2|Ythdf3|ENSMUSG00000047213.8|YTH domain family 3
mm10_v2_chr12_+_69197200_69197253	0.0326417	AUGGCAC	ENSMUST00000181850.1|9330151L19Rik|ENSMUSG00000097061.1|RIKEN cDNA 9330151L19 gene
mm10_v2_chr14_+_74640840_74640887	0.0325266	AUGGCAC	ENSMUST00000036653.3|Htr2a|ENSMUSG00000034997.4|5-hydroxytryptamine (serotonin) receptor 2A
mm10_v2_chr15_+_40655020_40655054	0.0307084	AUGGCAC	ENSMUST00000053467.4|Zfpm2|ENSMUSG00000022306.8|zinc finger protein, multitype 2
mm10_v2_chrX_+_159255782_159255899	0.0303321	AUGGCAC	ENSMUST00000126686.1|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3 	ENSMUST00000033671.6|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3
mm10_v2_chr9_-_70141484_70141578	0.0303053	AUGGCAC	ENSMUST00000034749.8|Fam81a|ENSMUSG00000032224.8|family with sequence similarity 81, member A
mm10_v2_chr4_+_124802543_124802678	0.0301037	AUGGCAC	ENSMUST00000138807.1|Mtf1|ENSMUSG00000028890.7|metal response element binding transcription factor 1 	ENSMUST00000030723.2|Mtf1|ENSMUSG00000028890.7|metal response element binding transcription factor 1 	ENSMUST00000175875.1|Mtf1|ENSMUSG00000028890.7|metal response element binding transcription factor 1
mm10_v2_chr12_-_79296266_79296310	0.0297539	AUGGCAC	ENSMUST00000021547.6|Zfyve26|ENSMUSG00000066440.4|zinc finger, FYVE domain containing 26
mm10_v2_chr19_-_14597983_14598016	0.0291879	AUGGCAC	ENSMUST00000052011.7|Tle4|ENSMUSG00000024642.10|transducin-like enhancer of split 4, homolog of Drosophila E(spl)
mm10_v2_chr11_+_79591120_79591224	0.0291235	AUGGCAC	ENSMUST00000017783.6|Rab11fip4|ENSMUSG00000017639.7|RAB11 family interacting protein 4 (class II)
mm10_v2_chr9_-_65827544_65827576	0.0288115	AUGGCAC	ENSMUST00000159109.1|Zfp609|ENSMUSG00000040524.9|zinc finger protein 609
mm10_v2_chr3_-_110142996_110143010	0.0280536	AUGGCAC	ENSMUST00000156177.2|Ntng1|ENSMUSG00000059857.9|netrin G1
mm10_v2_chr4_-_3938354_3938401	0.0272642	AUGGCAC	ENSMUST00000003369.3|Plag1|ENSMUSG00000003282.3|pleiomorphic adenoma gene 1
mm10_v2_chr2_-_6884975_6884996	0.0265273	AUGGCAC	ENSMUST00000114924.3|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000170438.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000114934.4|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr11_+_75679259_75679327	0.0264657	AUGGCAC	ENSMUST00000017920.7|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian) 	ENSMUST00000108426.1|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian) 	ENSMUST00000108425.1|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian) 	ENSMUST00000093115.3|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian)
mm10_v2_chrX_+_52912232_52912361	0.0264539	AUGGCAC	ENSMUST00000078944.6|Phf6|ENSMUSG00000025626.10|PHD finger protein 6 	ENSMUST00000101587.3|Phf6|ENSMUSG00000025626.10|PHD finger protein 6 	ENSMUST00000154864.2|Phf6|ENSMUSG00000025626.10|PHD finger protein 6
mm10_v2_chr7_+_97579868_97579901	0.0257812	AUGGCAC	ENSMUST00000042399.7|Rsf1|ENSMUSG00000035623.8|remodeling and spacing factor 1 	ENSMUST00000107153.1|Rsf1|ENSMUSG00000035623.8|remodeling and spacing factor 1
mm10_v2_chr11_-_102697710_102697782	0.0247244	AUGGCAC	ENSMUST00000164506.2|Ccdc43|ENSMUSG00000020925.10|coiled-coil domain containing 43 	ENSMUST00000092569.6|Ccdc43|ENSMUSG00000020925.10|coiled-coil domain containing 43
mm10_v2_chr10_-_67285180_67285316	0.0246336	AUGGCAC	ENSMUST00000159002.1|Nrbf2|ENSMUSG00000075000.5|nuclear receptor binding factor 2 	ENSMUST00000077839.6|Nrbf2|ENSMUSG00000075000.5|nuclear receptor binding factor 2
mm10_v2_chr12_+_70825492_70825514	0.0240881	AUGGCAC	ENSMUST00000057859.7|Frmd6|ENSMUSG00000048285.8|FERM domain containing 6
mm10_v2_chr2_-_42653598_42653598	0.0239321	AUGGCAC	ENSMUST00000052550.6|Lrp1b|ENSMUSG00000049252.11|low density lipoprotein-related protein 1B (deleted in tumors)
mm10_v2_chr6_-_127151044_127151055	0.0222945	AUGGCAC	ENSMUST00000000188.8|Ccnd2|ENSMUSG00000000184.9|cyclin D2
mm10_v2_chr12_-_8499985_8500017	0.0220337	AUGGCAC	ENSMUST00000067384.4|Rhob|ENSMUSG00000054364.4|ras homolog gene family, member B
mm10_v2_chr19_+_36554661_36554688	0.0210091	AUGGCAC	ENSMUST00000169036.2|Hectd2|ENSMUSG00000041180.7|HECT domain containing 2 	ENSMUST00000047247.5|Hectd2|ENSMUSG00000041180.7|HECT domain containing 2
mm10_v2_chr5_+_135187251_135187269	0.0200738	AUGGCAC	ENSMUST00000002825.5|Baz1b|ENSMUSG00000002748.6|bromodomain adjacent to zinc finger domain, 1B
mm10_v2_chr16_-_87432597_87432613	0.0190506	AUGGCAC	ENSMUST00000039449.7|Ltn1|ENSMUSG00000052299.8|listerin E3 ubiquitin protein ligase 1
mm10_v2_chr18_+_31759817_31759851	0.0189251	AUGGCAC	ENSMUST00000115808.2|Ammecr1l|ENSMUSG00000041915.8|AMME chromosomal region gene 1-like
mm10_v2_chr1_+_129273344_129273470	0.0179086	AUGGCAC	ENSMUST00000073527.6|Thsd7b|ENSMUSG00000042581.8|thrombospondin, type I, domain containing 7B 	ENSMUST00000040311.7|Thsd7b|ENSMUSG00000042581.8|thrombospondin, type I, domain containing 7B
mm10_v2_chr4_+_59805829_59805914	0.0178269	AUGGCAC	ENSMUST00000030080.6|Snx30|ENSMUSG00000028385.8|sorting nexin family member 30
mm10_v2_chr2_-_37647199_37647285	0.015604	AUGGCAC	ENSMUST00000028279.3|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr6_-_99266494_99266540	0.0154629	AUGGCAC	ENSMUST00000113326.2|Foxp1|ENSMUSG00000030067.11|forkhead box P1
mm10_v2_chr13_+_66932802_66932843	0.0150164	AUGGCAC	ENSMUST00000021990.3|Ptdss1|ENSMUSG00000021518.3|phosphatidylserine synthase 1
mm10_v2_chr12_+_53248677_53248677	0.0149361	AUGGCAC	ENSMUST00000101432.2|Npas3|ENSMUSG00000021010.7|neuronal PAS domain protein 3
mm10_v2_chr15_+_80711292_80711340	0.0145955	AUGGCAC	ENSMUST00000067689.7|Tnrc6b|ENSMUSG00000047888.9|trinucleotide repeat containing 6b
mm10_v2_chr4_+_155491353_155491411	0.013722	AUGGCAC	ENSMUST00000165335.1|Gnb1|ENSMUSG00000029064.9|guanine nucleotide binding protein (G protein), beta 1 	ENSMUST00000105616.3|Gnb1|ENSMUSG00000029064.9|guanine nucleotide binding protein (G protein), beta 1 	ENSMUST00000030940.7|Gnb1|ENSMUSG00000029064.9|guanine nucleotide binding protein (G protein), beta 1
mm10_v2_chr10_-_119240006_119240092	0.0132943	AUGGCAC	ENSMUST00000020315.6|Cand1|ENSMUSG00000020114.6|cullin associated and neddylation disassociated 1
mm10_v2_chr6_-_32588192_32588213	0.0129943	AUGGCAC	ENSMUST00000115096.2|Plxna4|ENSMUSG00000029765.10|plexin A4
mm10_v2_chr3_-_158036630_158036647	0.0127438	AUGGCAC	ENSMUST00000121326.1|Srsf11|ENSMUSG00000055436.12|serine/arginine-rich splicing factor 11
mm10_v2_chr17_-_12318660_12318684	0.0126838	AUGGCAC	ENSMUST00000089058.5|Map3k4|ENSMUSG00000014426.8|mitogen-activated protein kinase kinase kinase 4
mm10_v2_chr16_+_93832121_93832308	0.0110327	AUGGCAC	ENSMUST00000044068.6|Morc3|ENSMUSG00000039456.6|microrchidia 3
mm10_v2_chr17_-_79896028_79896123	0.010665	AUGGCAC	ENSMUST00000068282.5|Atl2|ENSMUSG00000059811.6|atlastin GTPase 2 	ENSMUST00000112437.1|Atl2|ENSMUSG00000059811.6|atlastin GTPase 2
mm10_v2_chr18_-_88894322_88894371	0.00944923	AUGGCAC	ENSMUST00000070116.5|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6 	ENSMUST00000125362.1|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6
mm10_v2_chr4_-_34687382_34687452	0.00838185	AUGGCAC	ENSMUST00000029970.7|Slc35a1|ENSMUSG00000028293.8|solute carrier family 35 (CMP-sialic acid transporter), member 1
mm10_v2_chr10_+_94514825_94514922	0.00785322	AUGGCAC	ENSMUST00000065060.5|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3
mm10_v2_chr13_+_83504032_83504050	0.00777122	AUGGCAC	ENSMUST00000163888.1|Mef2c|ENSMUSG00000005583.10|myocyte enhancer factor 2C 	ENSMUST00000005722.7|Mef2c|ENSMUSG00000005583.10|myocyte enhancer factor 2C
mm10_v2_chr5_+_67306941_67306977	0.00758046	AUGGCAC	ENSMUST00000162372.1|Slc30a9|ENSMUSG00000029221.9|solute carrier family 30 (zinc transporter), member 9 	ENSMUST00000113676.2|Slc30a9|ENSMUSG00000029221.9|solute carrier family 30 (zinc transporter), member 9
mm10_v2_chr13_+_14063776_14063822	0.00721888	AUGGCAC	ENSMUST00000129488.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000110536.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000110534.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000039538.8|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000110533.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like)
mm10_v2_chr7_-_34313531_34313568	0.00644076	AUGGCAC	ENSMUST00000108074.1|4931406P16Rik|ENSMUSG00000066571.7|RIKEN cDNA 4931406P16 gene
mm10_v2_chr8_-_60983215_60983319	0.00602149	AUGGCAC	ENSMUST00000004430.7|Clcn3|ENSMUSG00000004319.9|chloride channel 3 	ENSMUST00000110301.1|Clcn3|ENSMUSG00000004319.9|chloride channel 3 	ENSMUST00000093490.2|Clcn3|ENSMUSG00000004319.9|chloride channel 3
mm10_v2_chr16_+_13358375_13358439	0.00592888	AUGGCAC	ENSMUST00000149359.1|Mkl2|ENSMUSG00000009569.8|MKL/myocardin-like 2
mm10_v2_chr12_-_69892989_69893103	0.00565978	AUGGCAC	ENSMUST00000110567.1|Map4k5|ENSMUSG00000034761.9|mitogen-activated protein kinase kinase kinase kinase 5 	ENSMUST00000171211.1|Map4k5|ENSMUSG00000034761.9|mitogen-activated protein kinase kinase kinase kinase 5
mm10_v2_chr1_-_51915968_51916071	0.00553785	AUGGCAC	ENSMUST00000046390.7|Myo1b|ENSMUSG00000018417.8|myosin IB
mm10_v2_chr3_+_33799791_33799955	0.00534436	AUGGCAC	ENSMUST00000099153.3|Ttc14|ENSMUSG00000027677.11|tetratricopeptide repeat domain 14
mm10_v2_chr16_-_74411292_74411430	0.00515282	AUGGCAC	ENSMUST00000117200.1|Robo2|ENSMUSG00000052516.11|roundabout homolog 2 (Drosophila)
mm10_v2_chr9_+_68653761_68653786	0.00503686	AUGGCAC	ENSMUST00000034766.7|Rora|ENSMUSG00000032238.11|RAR-related orphan receptor alpha
mm10_v2_chr8_-_116732991_116733076	0.0035653	AUGGCAC	ENSMUST00000109102.2|Cdyl2|ENSMUSG00000031758.9|chromodomain protein, Y chromosome-like 2
mm10_v2_chr3_+_60501252_60501275	0.00343702	AUGGCAC	ENSMUST00000099087.2|Mbnl1|ENSMUSG00000027763.8|muscleblind-like 1 (Drosophila)
mm10_v2_chr8_+_9977707_9977725	0.00320523	AUGGCAC	ENSMUST00000139793.1|Abhd13|ENSMUSG00000040396.6|abhydrolase domain containing 13 	ENSMUST00000048216.5|Abhd13|ENSMUSG00000040396.6|abhydrolase domain containing 13
mm10_v2_chr11_+_57011798_57011827	0.00292799	AUGGCAC	ENSMUST00000036315.9|Gria1|ENSMUSG00000020524.10|glutamate receptor, ionotropic, AMPA1 (alpha 1)
mm10_v2_chr11_+_52098681_52098796	0.0017635	AUGGCAC	ENSMUST00000020608.2|Ppp2ca|ENSMUSG00000020349.4|protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform
mm10_v2_chr7_+_112023469_112023566	0.00139783	AUGGCAC	ENSMUST00000106653.2|Usp47|ENSMUSG00000059263.7|ubiquitin specific peptidase 47
mm10_v2_chr11_-_90002881_90002898	0.000827035	AUGGCAC	ENSMUST00000020864.8|Pctp|ENSMUSG00000020553.8|phosphatidylcholine transfer protein
