mm10_v2_chr8_-_89044162_89044195	0.173119	CCAGCAU	ENSMUST00000034090.6|Sall1|ENSMUSG00000031665.6|sal-like 1 (Drosophila)
mm10_v2_chr13_+_89540636_89540678	0.0958182	CCAGCAU	ENSMUST00000022108.7|Hapln1|ENSMUSG00000021613.8|hyaluronan and proteoglycan link protein 1
mm10_v2_chrX_-_7574120_7574312	0.0681799	CCAGCAU	ENSMUST00000045924.7|Ppp1r3f|ENSMUSG00000039556.10|protein phosphatase 1, regulatory (inhibitor) subunit 3F 	ENSMUST00000115742.2|Ppp1r3f|ENSMUSG00000039556.10|protein phosphatase 1, regulatory (inhibitor) subunit 3F 	ENSMUST00000150787.1|Ppp1r3f|ENSMUSG00000039556.10|protein phosphatase 1, regulatory (inhibitor) subunit 3F
mm10_v2_chr8_-_113848615_113848774	0.0655008	CCAGCAU	ENSMUST00000093113.4|Adamts18|ENSMUSG00000053399.8|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18
mm10_v2_chr12_-_78983476_78983493	0.0561518	CCAGCAU	ENSMUST00000070174.7|Tmem229b|ENSMUSG00000046157.7|transmembrane protein 229B
mm10_v2_chr11_+_96929260_96929324	0.0552127	CCAGCAU	ENSMUST00000054311.5|Prr15l|ENSMUSG00000047040.9|proline rich 15-like 	ENSMUST00000107636.3|Prr15l|ENSMUSG00000047040.9|proline rich 15-like
mm10_v2_chr8_+_76899772_76899828	0.0534321	CCAGCAU	ENSMUST00000109913.2|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2
mm10_v2_chr4_-_140665891_140666012	0.0502684	CCAGCAU	ENSMUST00000069623.5|Arhgef10l|ENSMUSG00000040964.10|Rho guanine nucleotide exchange factor (GEF) 10-like
mm10_v2_chr12_-_24096968_24096968	0.0493834	CCAGCAU	ENSMUST00000101538.3|9030624G23Rik|ENSMUSG00000073158.3|RIKEN cDNA 9030624G23 gene
mm10_v2_chr11_+_5520652_5520659	0.0475759	CCAGCAU	ENSMUST00000063084.9|Xbp1|ENSMUSG00000020484.12|X-box binding protein 1
mm10_v2_chr7_+_19094594_19094633	0.0435297	CCAGCAU	ENSMUST00000049454.5|Six5|ENSMUSG00000040841.5|sine oculis-related homeobox 5
mm10_v2_chr19_-_34747289_34747313	0.0378404	CCAGCAU	ENSMUST00000009522.3|Slc16a12|ENSMUSG00000009378.3|solute carrier family 16 (monocarboxylic acid transporters), member 12
mm10_v2_chr16_+_17797282_17797325	0.0367427	CCAGCAU	ENSMUST00000012161.3|Scarf2|ENSMUSG00000012017.3|scavenger receptor class F, member 2
mm10_v2_chr3_-_89387132_89387189	0.0356316	CCAGCAU	ENSMUST00000107433.1|Zbtb7b|ENSMUSG00000028042.9|zinc finger and BTB domain containing 7B
mm10_v2_chr7_+_134670667_134670715	0.0338676	CCAGCAU	ENSMUST00000084488.4|Dock1|ENSMUSG00000058325.5|dedicator of cytokinesis 1
mm10_v2_chr7_-_99858872_99858906	0.0329794	CCAGCAU	ENSMUST00000036274.6|Spcs2|ENSMUSG00000035227.6|signal peptidase complex subunit 2 homolog (S. cerevisiae)
mm10_v2_chr11_-_118355496_118355506	0.0313293	CCAGCAU	ENSMUST00000017610.3|Timp2|ENSMUSG00000017466.3|tissue inhibitor of metalloproteinase 2
mm10_v2_chr18_-_16809233_16809324	0.0312288	CCAGCAU	ENSMUST00000025166.7|Cdh2|ENSMUSG00000024304.8|cadherin 2
mm10_v2_chr7_-_119895697_119895752	0.0303041	CCAGCAU	ENSMUST00000059851.6|Dcun1d3|ENSMUSG00000048787.6|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
mm10_v2_chr12_-_101819048_101819061	0.0302812	CCAGCAU	ENSMUST00000021603.8|Fbln5|ENSMUSG00000021186.8|fibulin 5
mm10_v2_chr6_-_112947246_112947277	0.0295016	CCAGCAU	ENSMUST00000088373.4|Srgap3|ENSMUSG00000030257.10|SLIT-ROBO Rho GTPase activating protein 3
mm10_v2_chr5_-_30960236_30960320	0.0291289	CCAGCAU	ENSMUST00000088063.2|Preb|ENSMUSG00000045302.7|prolactin regulatory element binding
mm10_v2_chr2_-_160367057_160367073	0.0272662	CCAGCAU	ENSMUST00000099126.3|Mafb|ENSMUSG00000074622.3|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)
mm10_v2_chr16_-_67620880_67620922	0.026967	CCAGCAU	ENSMUST00000114292.1|Cadm2|ENSMUSG00000064115.7|cell adhesion molecule 2 	ENSMUST00000120898.1|Cadm2|ENSMUSG00000064115.7|cell adhesion molecule 2
mm10_v2_chr4_-_151861762_151861876	0.0267804	CCAGCAU	ENSMUST00000097774.2|Camta1|ENSMUSG00000014592.13|calmodulin binding transcription activator 1
mm10_v2_chr14_-_78536762_78536851	0.026664	CCAGCAU	ENSMUST00000123853.1|Akap11|ENSMUSG00000022016.9|A kinase (PRKA) anchor protein 11
mm10_v2_chr10_-_62231208_62231232	0.0255646	CCAGCAU	ENSMUST00000047883.9|Tspan15|ENSMUSG00000037031.9|tetraspanin 15
mm10_v2_chr11_+_69088490_69088553	0.0250827	CCAGCAU	ENSMUST00000021273.6|Vamp2|ENSMUSG00000020894.10|vesicle-associated membrane protein 2 	ENSMUST00000117780.1|Vamp2|ENSMUSG00000020894.10|vesicle-associated membrane protein 2
mm10_v2_chrX_+_101532734_101532777	0.0247507	CCAGCAU	ENSMUST00000118878.1|Taf1|ENSMUSG00000031314.11|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000101341.2|Taf1|ENSMUSG00000031314.11|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000149274.1|Taf1|ENSMUSG00000031314.11|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr15_+_66577536_66577637	0.0240683	CCAGCAU	ENSMUST00000048188.8|Phf20l1|ENSMUSG00000072501.4|PHD finger protein 20-like 1
mm10_v2_chr8_-_41133697_41133755	0.0239653	CCAGCAU	ENSMUST00000155055.1|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1 	ENSMUST00000059115.6|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1 	ENSMUST00000145860.1|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1
mm10_v2_chr3_-_116007399_116007411	0.0234744	CCAGCAU	ENSMUST00000067485.3|Slc30a7|ENSMUSG00000054414.3|solute carrier family 30 (zinc transporter), member 7
mm10_v2_chr2_-_162661075_162661147	0.0227404	CCAGCAU	ENSMUST00000109442.1|Ptprt|ENSMUSG00000053141.10|protein tyrosine phosphatase, receptor type, T 	ENSMUST00000109445.2|Ptprt|ENSMUSG00000053141.10|protein tyrosine phosphatase, receptor type, T 	ENSMUST00000109443.1|Ptprt|ENSMUSG00000053141.10|protein tyrosine phosphatase, receptor type, T 	ENSMUST00000109441.1|Ptprt|ENSMUSG00000053141.10|protein tyrosine phosphatase, receptor type, T
mm10_v2_chr7_+_122067164_122067216	0.0226539	CCAGCAU	ENSMUST00000033158.4|Ubfd1|ENSMUSG00000030870.6|ubiquitin family domain containing 1
mm10_v2_chr3_+_152395991_152396059	0.0220191	CCAGCAU	ENSMUST00000106100.2|Zzz3|ENSMUSG00000039068.10|zinc finger, ZZ domain containing 3
mm10_v2_chr6_+_86849488_86849628	0.020643	CCAGCAU	ENSMUST00000089519.6|Aak1|ENSMUSG00000057230.7|AP2 associated kinase 1 	ENSMUST00000113668.1|Aak1|ENSMUSG00000057230.7|AP2 associated kinase 1
mm10_v2_chr6_+_66896397_66896479	0.0204406	CCAGCAU	ENSMUST00000043148.6|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114228.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114227.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114226.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114225.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114224.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12
mm10_v2_chr19_+_16132812_16132910	0.020264	CCAGCAU	ENSMUST00000025541.5|Gnaq|ENSMUSG00000024639.5|guanine nucleotide binding protein, alpha q polypeptide
mm10_v2_chr11_-_96075655_96075677	0.0197633	CCAGCAU	ENSMUST00000090541.5|Atp5g1|ENSMUSG00000006057.9|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)
mm10_v2_chrX_+_136927320_136927329	0.0188375	CCAGCAU	ENSMUST00000059808.3|H2bfm|ENSMUSG00000048155.3|H2B histone family, member M
mm10_v2_chr6_-_120038647_120038699	0.0166901	CCAGCAU	ENSMUST00000088646.5|Wnk1|ENSMUSG00000045962.10|WNK lysine deficient protein kinase 1 	ENSMUST00000177761.1|Wnk1|ENSMUSG00000045962.10|WNK lysine deficient protein kinase 1 	ENSMUST00000088644.6|Wnk1|ENSMUSG00000045962.10|WNK lysine deficient protein kinase 1 	ENSMUST00000060043.6|Wnk1|ENSMUSG00000045962.10|WNK lysine deficient protein kinase 1
mm10_v2_chr13_+_104287855_104287882	0.016006	CCAGCAU	ENSMUST00000065766.6|Adamts6|ENSMUSG00000046169.9|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6
mm10_v2_chrX_+_73757069_73757111	0.0152451	CCAGCAU	ENSMUST00000002079.6|Plxnb3|ENSMUSG00000031385.8|plexin B3
mm10_v2_chr7_-_90457167_90457229	0.0149278	CCAGCAU	ENSMUST00000032844.5|Tmem126a|ENSMUSG00000030615.5|transmembrane protein 126A
mm10_v2_chr2_+_59612034_59612109	0.0144409	CCAGCAU	ENSMUST00000112568.1|Tanc1|ENSMUSG00000035168.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 	ENSMUST00000037526.4|Tanc1|ENSMUSG00000035168.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
mm10_v2_chr18_+_32163073_32163115	0.0129096	CCAGCAU	ENSMUST00000096575.3|Map3k2|ENSMUSG00000024383.8|mitogen-activated protein kinase kinase kinase 2
mm10_v2_chrX_-_141725181_141725263	0.0128761	CCAGCAU	ENSMUST00000067841.7|Irs4|ENSMUSG00000054667.7|insulin receptor substrate 4
mm10_v2_chr9_-_30922452_30922567	0.0126574	CCAGCAU	ENSMUST00000065112.6|Adamts15|ENSMUSG00000033453.7|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 15
mm10_v2_chr9_-_120023558_120023598	0.0123367	CCAGCAU	ENSMUST00000111635.2|Xirp1|ENSMUSG00000079243.2|xin actin-binding repeat containing 1
mm10_v2_chr11_-_44470464_44470513	0.0123241	CCAGCAU	ENSMUST00000102795.3|Ublcp1|ENSMUSG00000041231.9|ubiquitin-like domain containing CTD phosphatase 1
mm10_v2_chr15_+_80711292_80711340	0.0113501	CCAGCAU	ENSMUST00000067689.7|Tnrc6b|ENSMUSG00000047888.9|trinucleotide repeat containing 6b
mm10_v2_chr19_-_58860975_58860997	0.0110434	CCAGCAU	ENSMUST00000066285.4|Hspa12a|ENSMUSG00000025092.6|heat shock protein 12A
mm10_v2_chrX_+_42149288_42149412	0.0102094	CCAGCAU	ENSMUST00000115073.2|Stag2|ENSMUSG00000025862.8|stromal antigen 2 	ENSMUST00000115072.1|Stag2|ENSMUSG00000025862.8|stromal antigen 2
mm10_v2_chr19_-_47464406_47464450	0.010065	CCAGCAU	ENSMUST00000111800.2|Sh3pxd2a|ENSMUSG00000053617.5|SH3 and PX domains 2A 	ENSMUST00000081619.2|Sh3pxd2a|ENSMUSG00000053617.5|SH3 and PX domains 2A
mm10_v2_chr4_-_133633419_133633525	0.00966924	CCAGCAU	ENSMUST00000084238.4|Zdhhc18|ENSMUSG00000037553.8|zinc finger, DHHC domain containing 18
mm10_v2_chr8_+_84701430_84701497	0.00893115	CCAGCAU	ENSMUST00000037165.4|Lyl1|ENSMUSG00000034041.4|lymphoblastomic leukemia 1
mm10_v2_chr11_-_96824008_96824159	0.00864268	CCAGCAU	ENSMUST00000142065.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1 	ENSMUST00000167110.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1 	ENSMUST00000169828.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1 	ENSMUST00000126949.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1
mm10_v2_chr10_+_127739516_127739592	0.00785355	CCAGCAU	ENSMUST00000054287.7|Zbtb39|ENSMUSG00000044617.7|zinc finger and BTB domain containing 39
mm10_v2_chr9_+_32696005_32696121	0.00781038	CCAGCAU	ENSMUST00000034534.6|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain 	ENSMUST00000050797.7|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain 	ENSMUST00000184887.1|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain
mm10_v2_chr13_-_105054895_105054930	0.00749265	CCAGCAU	ENSMUST00000063551.5|Rgs7bp|ENSMUSG00000021719.8|regulator of G-protein signalling 7 binding protein
mm10_v2_chrX_+_96096034_96096056	0.00723166	CCAGCAU	ENSMUST00000117399.1|Msn|ENSMUSG00000031207.10|moesin
mm10_v2_chr12_-_56535047_56535106	0.00721612	CCAGCAU	ENSMUST00000178477.2|Nkx2-1|ENSMUSG00000001496.9|NK2 homeobox 1
mm10_v2_chr2_-_52676571_52676588	0.006674	CCAGCAU	ENSMUST00000178799.1|Cacnb4|ENSMUSG00000017412.9|calcium channel, voltage-dependent, beta 4 subunit
mm10_v2_chr4_-_43025756_43025788	0.00634558	CCAGCAU	ENSMUST00000098109.2|Pigo|ENSMUSG00000028454.10|phosphatidylinositol glycan anchor biosynthesis, class O
mm10_v2_chr2_-_119029392_119029395	0.0060596	CCAGCAU	ENSMUST00000036470.7|Ccdc32|ENSMUSG00000039983.7|coiled-coil domain containing 32 	ENSMUST00000110834.1|Ccdc32|ENSMUSG00000039983.7|coiled-coil domain containing 32
mm10_v2_chr5_+_33018816_33018865	0.00588386	CCAGCAU	ENSMUST00000019109.7|Ywhah|ENSMUSG00000018965.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide
mm10_v2_chr17_+_30005029_30005098	0.00563156	CCAGCAU	ENSMUST00000057897.7|Zfand3|ENSMUSG00000044477.10|zinc finger, AN1-type domain 3
mm10_v2_chr10_-_112928974_112929026	0.00553031	CCAGCAU	ENSMUST00000099276.2|Atxn7l3b|ENSMUSG00000074748.2|ataxin 7-like 3B
mm10_v2_chr16_+_4726357_4726370	0.00498176	CCAGCAU	ENSMUST00000154117.1|Hmox2|ENSMUSG00000004070.9|heme oxygenase (decycling) 2 	ENSMUST00000004172.8|Hmox2|ENSMUSG00000004070.9|heme oxygenase (decycling) 2
mm10_v2_chr5_-_137786651_137786668	0.00429043	CCAGCAU	ENSMUST00000031740.9|Mepce|ENSMUSG00000029726.10|methylphosphate capping enzyme
mm10_v2_chr13_+_54371340_54371352	0.00423479	CCAGCAU	ENSMUST00000026985.8|Cplx2|ENSMUSG00000025867.8|complexin 2
mm10_v2_chr18_-_23041641_23041671	0.00397042	CCAGCAU	ENSMUST00000097651.3|Nol4|ENSMUSG00000041923.9|nucleolar protein 4
mm10_v2_chr6_+_72414301_72414319	0.00335464	CCAGCAU	ENSMUST00000065906.7|Ggcx|ENSMUSG00000053460.7|gamma-glutamyl carboxylase
mm10_v2_chr6_-_12749193_12749253	0.00332662	CCAGCAU	ENSMUST00000046121.6|Thsd7a|ENSMUSG00000032625.8|thrombospondin, type I, domain containing 7A 	ENSMUST00000172356.1|Thsd7a|ENSMUSG00000032625.8|thrombospondin, type I, domain containing 7A
mm10_v2_chr13_+_45507438_45507515	0.00262302	CCAGCAU	ENSMUST00000000260.6|Gmpr|ENSMUSG00000000253.6|guanosine monophosphate reductase
mm10_v2_chr2_-_35200923_35201120	0.002192	CCAGCAU	ENSMUST00000028238.8|Rab14|ENSMUSG00000026878.10|RAB14, member RAS oncogene family 	ENSMUST00000113025.1|Rab14|ENSMUSG00000026878.10|RAB14, member RAS oncogene family
mm10_v2_chr3_+_41555723_41555745	0.00184071	CCAGCAU	ENSMUST00000026865.8|Phf17|ENSMUSG00000025764.8|PHD finger protein 17
mm10_v2_chr18_+_60925612_60925639	0.00136172	CCAGCAU	ENSMUST00000102888.3|Camk2a|ENSMUSG00000024617.10|calcium/calmodulin-dependent protein kinase II alpha 	ENSMUST00000025519.4|Camk2a|ENSMUSG00000024617.10|calcium/calmodulin-dependent protein kinase II alpha
mm10_v2_chr10_+_57486354_57486414	0.000911484	CCAGCAU	ENSMUST00000079833.4|Hsf2|ENSMUSG00000019878.7|heat shock factor 2
mm10_v2_chr10_+_53337686_53337724	0.000357149	CCAGCAU	ENSMUST00000046221.6|Pln|ENSMUSG00000038583.6|phospholamban 	ENSMUST00000163319.1|Pln|ENSMUSG00000038583.6|phospholamban
mm10_v2_chr1_+_177444653_177444669	5.90113e-05	CCAGCAU	ENSMUST00000094276.3|Zbtb18|ENSMUSG00000063659.6|zinc finger and BTB domain containing 18
