mm10_v2_chr18_+_37518341_37518359	0.438036	Foxq1	ENSMUST00000097609.1|Pcdhb22|ENSMUSG00000073591.3|protocadherin beta 22
mm10_v2_chr3_-_129332713_129332726	0.427777	Foxq1	ENSMUST00000029658.7|Enpep|ENSMUSG00000028024.8|glutamyl aminopeptidase
mm10_v2_chrX_-_108664891_108664891	0.419038	Foxq1	ENSMUST00000178160.1|Gm379|ENSMUSG00000093916.1|predicted gene 379
mm10_v2_chr18_+_37442517_37442517	0.413486	Foxq1	ENSMUST00000056915.1|Pcdhb13|ENSMUSG00000047307.1|protocadherin beta 13
mm10_v2_chr4_-_45532470_45532470	0.399785	Foxq1	ENSMUST00000147448.1|Shb|ENSMUSG00000044813.9|src homology 2 domain-containing transforming protein B
mm10_v2_chr18_+_37489465_37489465	0.368601	Foxq1	ENSMUST00000055949.2|Pcdhb18|ENSMUSG00000048347.4|protocadherin beta 18
mm10_v2_chr8_+_46986913_46986962	0.350763	Foxq1	ENSMUST00000039840.7|Enpp6|ENSMUSG00000038173.8|ectonucleotide pyrophosphatase/phosphodiesterase 6 	ENSMUST00000119686.1|Enpp6|ENSMUSG00000038173.8|ectonucleotide pyrophosphatase/phosphodiesterase 6
mm10_v2_chr8_+_86745679_86745699	0.33464	Foxq1	ENSMUST00000098532.2|Gm10638|ENSMUSG00000074178.2|predicted gene 10638
mm10_v2_chr5_-_145879857_145879964	0.318231	Foxq1	ENSMUST00000035918.7|Cyp3a11|ENSMUSG00000056035.7|cytochrome P450, family 3, subfamily a, polypeptide 11
mm10_v2_chr10_+_34297421_34297513	0.310924	Foxq1	ENSMUST00000047935.6|Tspyl4|ENSMUSG00000039485.6|TSPY-like 4
mm10_v2_chr11_-_62392605_62392659	0.307404	Foxq1	ENSMUST00000151498.2|Ncor1|ENSMUSG00000018501.11|nuclear receptor co-repressor 1 	ENSMUST00000159069.1|Ncor1|ENSMUSG00000018501.11|nuclear receptor co-repressor 1
mm10_v2_chr5_-_123140135_123140289	0.303215	Foxq1	ENSMUST00000160099.1|AI480526|ENSMUSG00000090086.1|expressed sequence AI480526
mm10_v2_chr12_+_7977640_7977779	0.289911	Foxq1	ENSMUST00000171271.1|Apob|ENSMUSG00000020609.8|apolipoprotein B 	ENSMUST00000037811.6|Apob|ENSMUSG00000020609.8|apolipoprotein B 	ENSMUST00000037520.7|Apob|ENSMUSG00000020609.8|apolipoprotein B
mm10_v2_chr10_+_115817247_115817323	0.279423	Foxq1	ENSMUST00000035563.7|Tspan8|ENSMUSG00000034127.8|tetraspanin 8 	ENSMUST00000080630.3|Tspan8|ENSMUSG00000034127.8|tetraspanin 8 	ENSMUST00000179196.1|Tspan8|ENSMUSG00000034127.8|tetraspanin 8
mm10_v2_chr18_+_37477768_37477835	0.278227	Foxq1	ENSMUST00000051442.5|Pcdhb16|ENSMUSG00000047910.5|protocadherin beta 16
mm10_v2_chr1_+_156838915_156838978	0.27157	Foxq1	ENSMUST00000111720.1|Angptl1|ENSMUSG00000033544.6|angiopoietin-like 1
mm10_v2_chr13_-_21453714_21453761	0.258353	Foxq1	ENSMUST00000032820.7|Zscan26|ENSMUSG00000022228.7|zinc finger and SCAN domain containing 26 	ENSMUST00000110485.1|Zscan26|ENSMUSG00000022228.7|zinc finger and SCAN domain containing 26
mm10_v2_chr2_+_35224516_35224548	0.23398	Foxq1	ENSMUST00000124489.1|Gm13605|ENSMUSG00000084768.1|predicted gene 13605
mm10_v2_chr11_+_16257706_16257808	0.223294	Foxq1	ENSMUST00000109645.2|Vstm2a|ENSMUSG00000048834.9|V-set and transmembrane domain containing 2A 	ENSMUST00000109647.2|Vstm2a|ENSMUSG00000048834.9|V-set and transmembrane domain containing 2A
mm10_v2_chr18_-_3281036_3281132	0.221306	Foxq1	ENSMUST00000049942.6|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator 	ENSMUST00000139537.1|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator 	ENSMUST00000124747.1|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator
mm10_v2_chr12_+_33314277_33314328	0.215755	Foxq1	ENSMUST00000133549.1|Atxn7l1|ENSMUSG00000020564.10|ataxin 7-like 1
mm10_v2_chr18_+_37447641_37447674	0.204541	Foxq1	ENSMUST00000052387.3|Pcdhb14|ENSMUSG00000044043.3|protocadherin beta 14
mm10_v2_chr8_+_45658731_45658804	0.20142	Foxq1	ENSMUST00000143820.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000132139.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr2_-_181581996_181582008	0.198458	Foxq1	ENSMUST00000057816.8|Uckl1|ENSMUSG00000089917.1|uridine-cytidine kinase 1-like 1
mm10_v2_chr11_+_77765588_77765643	0.196253	Foxq1	ENSMUST00000164315.1|Myo18a|ENSMUSG00000000631.13|myosin XVIIIA
mm10_v2_chr5_-_74065736_74065758	0.194041	Foxq1	ENSMUST00000145016.1|Usp46|ENSMUSG00000054814.8|ubiquitin specific peptidase 46
mm10_v2_chr2_+_120977017_120977107	0.193119	Foxq1	ENSMUST00000067582.7|Tmem62|ENSMUSG00000054484.8|transmembrane protein 62
mm10_v2_chr5_+_102481374_102481391	0.190803	Foxq1	ENSMUST00000094559.2|Arhgap24|ENSMUSG00000057315.8|Rho GTPase activating protein 24 	ENSMUST00000073302.5|Arhgap24|ENSMUSG00000057315.8|Rho GTPase activating protein 24
mm10_v2_chr3_+_125404292_125404340	0.188088	Foxq1	ENSMUST00000144344.1|Ndst4|ENSMUSG00000027971.10|N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4
mm10_v2_chr6_-_129237948_129237987	0.184171	Foxq1	ENSMUST00000181238.1|2310001H17Rik|ENSMUSG00000097354.1|RIKEN cDNA 2310001H17 gene 	ENSMUST00000180379.1|2310001H17Rik|ENSMUSG00000097354.1|RIKEN cDNA 2310001H17 gene
mm10_v2_chr5_+_102481546_102481560	0.179419	Foxq1	ENSMUST00000112854.1|Arhgap24|ENSMUSG00000057315.8|Rho GTPase activating protein 24
mm10_v2_chr18_+_37496997_37496997	0.179199	Foxq1	ENSMUST00000059571.5|Pcdhb19|ENSMUSG00000043313.5|protocadherin beta 19
mm10_v2_chr12_+_52516077_52516077	0.177186	Foxq1	ENSMUST00000110725.1|Arhgap5|ENSMUSG00000035133.8|Rho GTPase activating protein 5
mm10_v2_chr4_-_43584386_43584494	0.176718	Foxq1	ENSMUST00000107884.2|Msmp|ENSMUSG00000078719.2|microseminoprotein, prostate associated
mm10_v2_chr19_-_56822161_56822220	0.175143	Foxq1	ENSMUST00000118592.1|A630007B06Rik|ENSMUSG00000035173.8|RIKEN cDNA A630007B06 gene
mm10_v2_chr1_+_110099295_110099295	0.170361	Foxq1	ENSMUST00000134301.1|Cdh7|ENSMUSG00000026312.11|cadherin 7, type 2
mm10_v2_chrX_-_70365052_70365112	0.170176	Foxq1	ENSMUST00000101509.2|Ids|ENSMUSG00000035847.9|iduronate 2-sulfatase
mm10_v2_chr2_-_127729872_127729936	0.166761	Foxq1	ENSMUST00000028856.2|Mall|ENSMUSG00000027377.2|mal, T cell differentiation protein-like
mm10_v2_chr13_+_40917626_40917657	0.164192	Foxq1	ENSMUST00000067778.6|Gcnt2|ENSMUSG00000021360.9|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm10_v2_chr19_+_43782181_43782193	0.162478	Foxq1	ENSMUST00000026208.4|Abcc2|ENSMUSG00000025194.4|ATP-binding cassette, sub-family C (CFTR/MRP), member 2
mm10_v2_chr19_-_28963863_28963908	0.161543	Foxq1	ENSMUST00000161813.1|4430402I18Rik|ENSMUSG00000064202.9|RIKEN cDNA 4430402I18 gene
mm10_v2_chr9_-_105521147_105521265	0.15762	Foxq1	ENSMUST00000176770.1|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000085133.6|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering
mm10_v2_chr7_+_24134148_24134184	0.157341	Foxq1	ENSMUST00000056549.7|Zfp235|ENSMUSG00000047603.8|zinc finger protein 235
mm10_v2_chr9_-_110375430_110375430	0.154997	Foxq1	ENSMUST00000168137.1|5830462I19Rik|ENSMUSG00000091102.1|RIKEN cDNA 5830462I19 gene
mm10_v2_chr7_-_100932140_100932200	0.150594	Foxq1	ENSMUST00000107032.1|Arhgef17|ENSMUSG00000032875.7|Rho guanine nucleotide exchange factor (GEF) 17
mm10_v2_chr7_+_90426312_90426312	0.147429	Foxq1	ENSMUST00000061391.7|Ccdc89|ENSMUSG00000044362.7|coiled-coil domain containing 89
mm10_v2_chr4_-_87806276_87806294	0.14699	Foxq1	ENSMUST00000148059.1|Mllt3|ENSMUSG00000028496.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm10_v2_chr9_+_15239045_15239155	0.144066	Foxq1	ENSMUST00000034413.6|Vstm5|ENSMUSG00000031937.6|V-set and transmembrane domain containing 5
mm10_v2_chr18_+_51117754_51117898	0.143881	Foxq1	ENSMUST00000116639.2|Prr16|ENSMUSG00000073565.4|proline rich 16
mm10_v2_chr18_-_88927447_88927481	0.140838	Foxq1	ENSMUST00000147313.1|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6
mm10_v2_chr6_+_97991776_97991792	0.136759	Foxq1	ENSMUST00000043628.6|Mitf|ENSMUSG00000035158.9|microphthalmia-associated transcription factor
mm10_v2_chr12_+_111166485_111166520	0.134716	Foxq1	ENSMUST00000139162.1|Traf3|ENSMUSG00000021277.10|TNF receptor-associated factor 3
mm10_v2_chr5_-_122002340_122002368	0.134707	Foxq1	ENSMUST00000134326.1|Cux2|ENSMUSG00000042589.12|cut-like homeobox 2
mm10_v2_chr12_-_73113407_73113456	0.133908	Foxq1	ENSMUST00000175693.1|Six4|ENSMUSG00000034460.8|sine oculis-related homeobox 4
mm10_v2_chr1_-_82768449_82768465	0.132293	Foxq1	ENSMUST00000027331.2|Tm4sf20|ENSMUSG00000026149.2|transmembrane 4 L six family member 20
mm10_v2_chr17_-_32822200_32822200	0.127436	Foxq1	ENSMUST00000179695.1|Zfp799|ENSMUSG00000095253.1|zinc finger protein 799
mm10_v2_chrX_+_139563316_139563339	0.126867	Foxq1	ENSMUST00000113027.1|Rnf128|ENSMUSG00000031438.5|ring finger protein 128
mm10_v2_chr8_+_45658666_45658728	0.121393	Foxq1	ENSMUST00000134675.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000139869.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000126067.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr10_+_42860776_42860810	0.120033	Foxq1	ENSMUST00000105494.1|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr12_-_83597140_83597177	0.118267	Foxq1	ENSMUST00000048319.4|Zfyve1|ENSMUSG00000042628.7|zinc finger, FYVE domain containing 1
mm10_v2_chr3_-_146781351_146781431	0.118129	Foxq1	ENSMUST00000005164.7|Prkacb|ENSMUSG00000005034.9|protein kinase, cAMP dependent, catalytic, beta
mm10_v2_chr14_+_58072686_58072686	0.11644	Foxq1	ENSMUST00000022545.7|Fgf9|ENSMUSG00000021974.8|fibroblast growth factor 9
mm10_v2_chr11_-_107348130_107348179	0.114634	Foxq1	ENSMUST00000134763.1|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr4_-_87806296_87806325	0.112013	Foxq1	ENSMUST00000126353.1|Mllt3|ENSMUSG00000028496.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 	ENSMUST00000149357.1|Mllt3|ENSMUSG00000028496.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm10_v2_chr1_-_43098622_43098686	0.105024	Foxq1	ENSMUST00000095014.1|Tgfbrap1|ENSMUSG00000070939.3|transforming growth factor, beta receptor associated protein 1
mm10_v2_chr16_-_85550417_85550432	0.104456	Foxq1	ENSMUST00000175700.1|Cyyr1|ENSMUSG00000041134.9|cysteine and tyrosine-rich protein 1 	ENSMUST00000114174.2|Cyyr1|ENSMUSG00000041134.9|cysteine and tyrosine-rich protein 1
mm10_v2_chr9_+_50494516_50494533	0.102482	Foxq1	ENSMUST00000114474.1|1600029D21Rik|ENSMUSG00000032068.8|RIKEN cDNA 1600029D21 gene
mm10_v2_chr2_-_91255995_91256047	0.102265	Foxq1	ENSMUST00000180732.1|Gm17281|ENSMUSG00000097317.1|predicted gene, 17281
mm10_v2_chr1_-_170110491_170110532	0.102206	Foxq1	ENSMUST00000027985.2|Ddr2|ENSMUSG00000026674.3|discoidin domain receptor family, member 2
mm10_v2_chr15_-_102189032_102189050	0.095908	Foxq1	ENSMUST00000023805.1|Csad|ENSMUSG00000023044.1|cysteine sulfinic acid decarboxylase
mm10_v2_chr3_+_96645579_96645608	0.0956908	Foxq1	ENSMUST00000119365.1|Itga10|ENSMUSG00000090210.1|integrin, alpha 10 	ENSMUST00000029744.5|Itga10|ENSMUSG00000090210.1|integrin, alpha 10
mm10_v2_chr19_-_36919606_36919622	0.0953233	Foxq1	ENSMUST00000057337.7|Fgfbp3|ENSMUSG00000047632.10|fibroblast growth factor binding protein 3
mm10_v2_chr12_-_101958148_101958246	0.0899693	Foxq1	ENSMUST00000159883.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000160251.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000161011.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000021606.5|Atxn3|ENSMUSG00000021189.5|ataxin 3
mm10_v2_chr4_+_108479081_108479224	0.0893066	Foxq1	ENSMUST00000155068.1|Zcchc11|ENSMUSG00000034610.8|zinc finger, CCHC domain containing 11
mm10_v2_chr2_-_37703275_37703290	0.0836846	Foxq1	ENSMUST00000072186.5|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr10_+_42860648_42860676	0.0813481	Foxq1	ENSMUST00000105495.1|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr2_+_112284561_112284610	0.0805141	Foxq1	ENSMUST00000053666.7|Slc12a6|ENSMUSG00000027130.9|solute carrier family 12, member 6
mm10_v2_chr11_+_113649328_113649328	0.0800703	Foxq1	ENSMUST00000063776.7|Cog1|ENSMUSG00000018661.11|component of oligomeric golgi complex 1
mm10_v2_chr7_+_24270420_24270420	0.0799575	Foxq1	ENSMUST00000108438.3|Zfp93|ENSMUSG00000055305.9|zinc finger protein 93
mm10_v2_chr15_+_97247011_97247107	0.0791952	Foxq1	ENSMUST00000059433.6|Pced1b|ENSMUSG00000044250.7|PC-esterase domain containing 1B
mm10_v2_chr5_-_146220901_146220987	0.0780429	Foxq1	ENSMUST00000169407.2|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6 	ENSMUST00000161331.1|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6 	ENSMUST00000159074.2|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6 	ENSMUST00000067837.3|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6
mm10_v2_chr14_-_30353468_30353535	0.0773024	Foxq1	ENSMUST00000112249.1|Cacna1d|ENSMUSG00000015968.10|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm10_v2_chr2_+_76406529_76406580	0.0768406	Foxq1	ENSMUST00000111929.1|Osbpl6|ENSMUSG00000042359.12|oxysterol binding protein-like 6 	ENSMUST00000077972.4|Osbpl6|ENSMUSG00000042359.12|oxysterol binding protein-like 6 	ENSMUST00000111930.2|Osbpl6|ENSMUSG00000042359.12|oxysterol binding protein-like 6
mm10_v2_chr12_-_110840905_110840950	0.0761193	Foxq1	ENSMUST00000177224.1|Stk30|ENSMUSG00000056458.10|serine/threonine kinase 30 	ENSMUST00000084974.4|Stk30|ENSMUSG00000056458.10|serine/threonine kinase 30 	ENSMUST00000070565.8|Stk30|ENSMUSG00000056458.10|serine/threonine kinase 30
mm10_v2_chr11_+_82911253_82911294	0.0753229	Foxq1	ENSMUST00000164945.1|Unc45b|ENSMUSG00000018845.8|unc-45 homolog B (C. elegans) 	ENSMUST00000018989.7|Unc45b|ENSMUSG00000018845.8|unc-45 homolog B (C. elegans)
mm10_v2_chr17_+_34914459_34914476	0.0746617	Foxq1	ENSMUST00000007249.8|Slc44a4|ENSMUSG00000007034.9|solute carrier family 44, member 4
mm10_v2_chr13_-_67637776_67637801	0.072651	Foxq1	ENSMUST00000012314.8|A530054K11Rik|ENSMUSG00000021510.10|RIKEN cDNA A530054K11 gene
mm10_v2_chr11_+_97029925_97029997	0.0683056	Foxq1	ENSMUST00000021249.4|Scrn2|ENSMUSG00000020877.5|secernin 2
mm10_v2_chr15_+_85510812_85510812	0.066777	Foxq1	ENSMUST00000079690.2|Gm4825|ENSMUSG00000063548.2|predicted pseudogene 4825
mm10_v2_chr10_+_20148457_20148478	0.0657514	Foxq1	ENSMUST00000020173.8|Map7|ENSMUSG00000019996.10|microtubule-associated protein 7
mm10_v2_chr4_-_119173849_119173901	0.0653396	Foxq1	ENSMUST00000052715.4|Zfp691|ENSMUSG00000045268.7|zinc finger protein 691 	ENSMUST00000179290.1|Zfp691|ENSMUSG00000045268.7|zinc finger protein 691 	ENSMUST00000154226.1|Zfp691|ENSMUSG00000045268.7|zinc finger protein 691
mm10_v2_chr7_-_133782721_133782762	0.0642982	Foxq1	ENSMUST00000063669.1|Dhx32|ENSMUSG00000030986.6|DEAH (Asp-Glu-Ala-His) box polypeptide 32
mm10_v2_chr7_+_78913765_78913791	0.063367	Foxq1	ENSMUST00000038142.8|Isg20|ENSMUSG00000039236.12|interferon-stimulated protein
mm10_v2_chr6_+_36388055_36388084	0.0633182	Foxq1	ENSMUST00000172278.1|Chrm2|ENSMUSG00000045613.3|cholinergic receptor, muscarinic 2, cardiac
mm10_v2_chr5_+_135725713_135725740	0.0628204	Foxq1	ENSMUST00000127096.1|Por|ENSMUSG00000005514.8|P450 (cytochrome) oxidoreductase
mm10_v2_chr1_-_6215292_6215292	0.0624174	Foxq1	ENSMUST00000097832.1|4732440D04Rik|ENSMUSG00000073741.1|RIKEN cDNA 4732440D04 gene
mm10_v2_chr10_+_69925954_69926133	0.0623115	Foxq1	ENSMUST00000181974.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000182795.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000182437.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr10_+_42860543_42860627	0.0610846	Foxq1	ENSMUST00000157071.1|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr4_-_119174178_119174221	0.0609732	Foxq1	ENSMUST00000106355.3|Zfp691|ENSMUSG00000045268.7|zinc finger protein 691
mm10_v2_chr17_+_35077080_35077155	0.059436	Foxq1	ENSMUST00000172959.1|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E
mm10_v2_chr18_-_39489157_39489283	0.0592955	Foxq1	ENSMUST00000131885.1|Nr3c1|ENSMUSG00000024431.8|nuclear receptor subfamily 3, group C, member 1
mm10_v2_chr3_-_108154871_108154908	0.0576397	Foxq1	ENSMUST00000062028.1|Gpr61|ENSMUSG00000046793.2|G protein-coupled receptor 61
mm10_v2_chr7_+_80186835_80186904	0.0565402	Foxq1	ENSMUST00000107383.1|Sema4b|ENSMUSG00000030539.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 	ENSMUST00000032754.7|Sema4b|ENSMUSG00000030539.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm10_v2_chr14_-_36935560_36935578	0.055185	Foxq1	ENSMUST00000183038.1|Ccser2|ENSMUSG00000058690.8|coiled-coil serine rich 2
mm10_v2_chr18_+_57468478_57468541	0.0551418	Foxq1	ENSMUST00000091892.2|Ctxn3|ENSMUSG00000069372.2|cortexin 3
mm10_v2_chr6_-_48086530_48086658	0.05482	Foxq1	ENSMUST00000073124.6|Zfp746|ENSMUSG00000057691.6|zinc finger protein 746
mm10_v2_chr13_-_67061131_67061178	0.054809	Foxq1	ENSMUST00000167565.1|Zfp712|ENSMUSG00000090641.1|zinc finger protein 712
mm10_v2_chr16_-_56024628_56024668	0.0547924	Foxq1	ENSMUST00000119981.1|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein 	ENSMUST00000096021.3|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein
mm10_v2_chr16_+_91391721_91391721	0.0537577	Foxq1	ENSMUST00000160764.1|Gm21970|ENSMUSG00000093701.1|predicted gene 21970
mm10_v2_chr5_+_107597760_107597784	0.053129	Foxq1	ENSMUST00000112655.1|Rpap2|ENSMUSG00000033773.8|RNA polymerase II associated protein 2
mm10_v2_chr8_+_25911670_25911692	0.053099	Foxq1	ENSMUST00000120653.1|Kcnu1|ENSMUSG00000031576.9|potassium channel, subfamily U, member 1 	ENSMUST00000126226.1|Kcnu1|ENSMUSG00000031576.9|potassium channel, subfamily U, member 1
mm10_v2_chr1_-_132707304_132707326	0.0528868	Foxq1	ENSMUST00000043189.7|Nfasc|ENSMUSG00000026442.8|neurofascin
mm10_v2_chr1_+_89454769_89454885	0.0521483	Foxq1	ENSMUST00000027521.8|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 	ENSMUST00000074945.5|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm10_v2_chr15_-_58214882_58214926	0.0515879	Foxq1	ENSMUST00000022986.6|Fbxo32|ENSMUSG00000022358.6|F-box protein 32
mm10_v2_chr1_-_195131536_195131588	0.0515661	Foxq1	ENSMUST00000075451.6|Cr1l|ENSMUSG00000016481.10|complement component (3b/4b) receptor 1-like
mm10_v2_chr2_+_152669461_152669539	0.0506906	Foxq1	ENSMUST00000125366.1|H13|ENSMUSG00000019188.10|histocompatibility 13 	ENSMUST00000109825.1|H13|ENSMUSG00000019188.10|histocompatibility 13 	ENSMUST00000089059.2|H13|ENSMUSG00000019188.10|histocompatibility 13 	ENSMUST00000079247.3|H13|ENSMUSG00000019188.10|histocompatibility 13
mm10_v2_chrX_-_75380041_75380041	0.0501771	Foxq1	ENSMUST00000114085.2|F8|ENSMUSG00000031196.7|coagulation factor VIII
mm10_v2_chr16_-_79091078_79091107	0.0475908	Foxq1	ENSMUST00000023566.4|Tmprss15|ENSMUSG00000022857.7|transmembrane protease, serine 15 	ENSMUST00000060402.5|Tmprss15|ENSMUSG00000022857.7|transmembrane protease, serine 15
mm10_v2_chr11_-_100822525_100822576	0.0466703	Foxq1	ENSMUST00000107358.2|Stat5b|ENSMUSG00000020919.5|signal transducer and activator of transcription 5B
mm10_v2_chr12_+_111166536_111166548	0.0464034	Foxq1	ENSMUST00000060274.6|Traf3|ENSMUSG00000021277.10|TNF receptor-associated factor 3
mm10_v2_chr1_+_87404916_87404964	0.043555	Foxq1	ENSMUST00000173152.1|Gigyf2|ENSMUSG00000048000.9|GRB10 interacting GYF protein 2 	ENSMUST00000173663.1|Gigyf2|ENSMUSG00000048000.9|GRB10 interacting GYF protein 2
mm10_v2_chr6_-_83536215_83536265	0.0430484	Foxq1	ENSMUST00000075161.5|Actg2|ENSMUSG00000059430.8|actin, gamma 2, smooth muscle, enteric
mm10_v2_chr1_-_13372434_13372457	0.0419979	Foxq1	ENSMUST00000081713.4|Ncoa2|ENSMUSG00000005886.8|nuclear receptor coactivator 2
mm10_v2_chr15_-_97247287_97247315	0.0415965	Foxq1	ENSMUST00000053106.5|Amigo2|ENSMUSG00000048218.5|adhesion molecule with Ig like domain 2
mm10_v2_chr7_+_35449035_35449050	0.0348286	Foxq1	ENSMUST00000118969.1|Slc7a9|ENSMUSG00000030492.10|solute carrier family 7 (cationic amino acid transporter, y+ system), member 9 	ENSMUST00000118383.1|Slc7a9|ENSMUSG00000030492.10|solute carrier family 7 (cationic amino acid transporter, y+ system), member 9
mm10_v2_chr8_+_78509319_78509399	0.0307026	Foxq1	ENSMUST00000034111.8|Slc10a7|ENSMUSG00000031684.10|solute carrier family 10 (sodium/bile acid cotransporter family), member 7
mm10_v2_chr1_-_139781236_139781239	0.0305057	Foxq1	ENSMUST00000027612.8|Gm4788|ENSMUSG00000070594.4|predicted gene 4788 	ENSMUST00000111989.2|Gm4788|ENSMUSG00000070594.4|predicted gene 4788 	ENSMUST00000111986.2|Gm4788|ENSMUSG00000070594.4|predicted gene 4788
mm10_v2_chr7_+_19176416_19176440	0.029632	Foxq1	ENSMUST00000117338.1|Eml2|ENSMUSG00000040811.9|echinoderm microtubule associated protein like 2
mm10_v2_chr17_+_35076902_35077073	0.0295558	Foxq1	ENSMUST00000172494.1|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E 	ENSMUST00000172678.1|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E 	ENSMUST00000013910.4|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E
mm10_v2_chr11_-_82829024_82829043	0.029188	Foxq1	ENSMUST00000021036.6|Rffl|ENSMUSG00000020696.12|ring finger and FYVE like domain containing protein 	ENSMUST00000074515.4|Rffl|ENSMUSG00000020696.12|ring finger and FYVE like domain containing protein 	ENSMUST00000103218.2|Rffl|ENSMUSG00000020696.12|ring finger and FYVE like domain containing protein
mm10_v2_chr4_+_139622842_139622902	0.0275059	Foxq1	ENSMUST00000039818.9|Aldh4a1|ENSMUSG00000028737.9|aldehyde dehydrogenase 4 family, member A1
mm10_v2_chr3_-_57301919_57301956	0.0274865	Foxq1	ENSMUST00000029376.8|Tm4sf1|ENSMUSG00000027800.8|transmembrane 4 superfamily member 1
mm10_v2_chr11_-_99493112_99493137	0.0274394	Foxq1	ENSMUST00000006969.7|Krt23|ENSMUSG00000006777.7|keratin 23
mm10_v2_chr3_+_79884931_79885090	0.0271841	Foxq1	ENSMUST00000135021.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr16_-_88563166_88563200	0.0263573	Foxq1	ENSMUST00000049697.4|Cldn8|ENSMUSG00000050520.4|claudin 8
mm10_v2_chr9_-_36797303_36797425	0.0263262	Foxq1	ENSMUST00000115086.5|Ei24|ENSMUSG00000062762.9|etoposide induced 2.4 mRNA
mm10_v2_chr7_+_45783883_45783947	0.0257231	Foxq1	ENSMUST00000072580.5|Lmtk3|ENSMUSG00000062044.7|lemur tyrosine kinase 3
mm10_v2_chr19_-_43674844_43674909	0.0248032	Foxq1	ENSMUST00000046038.7|Slc25a28|ENSMUSG00000040414.7|solute carrier family 25, member 28
mm10_v2_chr5_+_25247344_25247363	0.0242567	Foxq1	ENSMUST00000114950.1|Galnt11|ENSMUSG00000038072.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11
mm10_v2_chr12_-_104865076_104865138	0.0235998	Foxq1	ENSMUST00000109937.1|Clmn|ENSMUSG00000021097.8|calmin 	ENSMUST00000109936.1|Clmn|ENSMUSG00000021097.8|calmin
mm10_v2_chrX_-_103483205_103483225	0.0226379	Foxq1	ENSMUST00000127786.2|Xist|ENSMUSG00000086503.2|inactive X specific transcripts
mm10_v2_chr18_+_69344503_69344530	0.0216364	Foxq1	ENSMUST00000114985.3|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr11_+_62551676_62551735	0.0213489	Foxq1	ENSMUST00000136938.1|Ubb|ENSMUSG00000019505.7|ubiquitin B
mm10_v2_chrX_+_107149580_107149615	0.0190939	Foxq1	ENSMUST00000137107.1|A630033H20Rik|ENSMUSG00000054293.4|RIKEN cDNA A630033H20 gene 	ENSMUST00000067249.2|A630033H20Rik|ENSMUSG00000054293.4|RIKEN cDNA A630033H20 gene
mm10_v2_chr3_+_129532386_129532440	0.0186813	Foxq1	ENSMUST00000071402.2|Elovl6|ENSMUSG00000041220.6|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm10_v2_chr1_+_43098710_43098760	0.0181306	Foxq1	ENSMUST00000010434.7|AI597479|ENSMUSG00000010290.7|expressed sequence AI597479
mm10_v2_chr19_+_11895999_11895999	0.0172235	Foxq1	ENSMUST00000072784.2|Olfr1420|ENSMUSG00000060878.2|olfactory receptor 1420
mm10_v2_chr3_-_130709419_130709451	0.0165487	Foxq1	ENSMUST00000043937.7|Ostc|ENSMUSG00000041084.7|oligosaccharyltransferase complex subunit
mm10_v2_chr2_-_37647199_37647285	0.0160782	Foxq1	ENSMUST00000028279.3|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr4_+_107314399_107314437	0.0157531	Foxq1	ENSMUST00000128284.1|Yipf1|ENSMUSG00000057375.7|Yip1 domain family, member 1 	ENSMUST00000124650.1|Yipf1|ENSMUSG00000057375.7|Yip1 domain family, member 1
mm10_v2_chr5_-_130255525_130255537	0.0151396	Foxq1	ENSMUST00000026387.4|Sbds|ENSMUSG00000025337.4|Shwachman-Bodian-Diamond syndrome homolog (human)
mm10_v2_chr4_-_15945359_15945507	0.0139003	Foxq1	ENSMUST00000029877.8|Decr1|ENSMUSG00000028223.8|2,4-dienoyl CoA reductase 1, mitochondrial
mm10_v2_chr4_+_107314363_107314397	0.0136491	Foxq1	ENSMUST00000075693.5|Yipf1|ENSMUSG00000057375.7|Yip1 domain family, member 1 	ENSMUST00000139527.1|Yipf1|ENSMUSG00000057375.7|Yip1 domain family, member 1
mm10_v2_chr3_+_79884576_79884597	0.0129065	Foxq1	ENSMUST00000145992.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr1_+_51289106_51289142	0.0123203	Foxq1	ENSMUST00000051572.6|Sdpr|ENSMUSG00000045954.6|serum deprivation response
mm10_v2_chr1_+_134415414_134415504	0.0119741	Foxq1	ENSMUST00000112237.1|Adipor1|ENSMUSG00000026457.8|adiponectin receptor 1
mm10_v2_chr12_+_77238093_77238122	0.0117863	Foxq1	ENSMUST00000177595.1|Fut8|ENSMUSG00000021065.9|fucosyltransferase 8 	ENSMUST00000171770.2|Fut8|ENSMUSG00000021065.9|fucosyltransferase 8
mm10_v2_chr2_-_126783416_126783452	0.0112051	Foxq1	ENSMUST00000130356.1|Usp50|ENSMUSG00000027364.6|ubiquitin specific peptidase 50 	ENSMUST00000028842.2|Usp50|ENSMUSG00000027364.6|ubiquitin specific peptidase 50
mm10_v2_chr15_+_102460076_102460108	0.00958662	Foxq1	ENSMUST00000164688.1|Prr13|ENSMUSG00000023048.7|proline rich 13
mm10_v2_chr1_-_86111970_86111984	0.00913508	Foxq1	ENSMUST00000027431.6|Htr2b|ENSMUSG00000026228.6|5-hydroxytryptamine (serotonin) receptor 2B
mm10_v2_chrX_+_107149454_107149500	0.00729334	Foxq1	ENSMUST00000125676.1|A630033H20Rik|ENSMUSG00000054293.4|RIKEN cDNA A630033H20 gene 	ENSMUST00000180182.1|A630033H20Rik|ENSMUSG00000054293.4|RIKEN cDNA A630033H20 gene
mm10_v2_chr9_+_70678950_70679010	0.00726345	Foxq1	ENSMUST00000067880.6|Adam10|ENSMUSG00000054693.8|a disintegrin and metallopeptidase domain 10
mm10_v2_chr19_-_17837620_17837642	0.00666715	Foxq1	ENSMUST00000025618.8|Pcsk5|ENSMUSG00000024713.9|proprotein convertase subtilisin/kexin type 5 	ENSMUST00000050715.8|Pcsk5|ENSMUSG00000024713.9|proprotein convertase subtilisin/kexin type 5
mm10_v2_chr2_-_107059646_107059658	0.00632012	Foxq1	ENSMUST00000028533.6|Fshb|ENSMUSG00000027120.6|follicle stimulating hormone beta
mm10_v2_chr6_-_39725448_39725478	0.00387537	Foxq1	ENSMUST00000002487.8|Braf|ENSMUSG00000002413.9|Braf transforming gene
mm10_v2_chr11_+_76904513_76904569	0.00325878	Foxq1	ENSMUST00000072633.3|Tmigd1|ENSMUSG00000020839.10|transmembrane and immunoglobulin domain containing 1
