mm10_v2_chr4_+_136206365_136206405	0.0954704	GAGAUGA	ENSMUST00000047526.7|Asap3|ENSMUSG00000036995.7|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
mm10_v2_chr14_-_73385225_73385311	0.0954009	GAGAUGA	ENSMUST00000022704.7|Itm2b|ENSMUSG00000022108.7|integral membrane protein 2B
mm10_v2_chr18_+_38993126_38993186	0.079397	GAGAUGA	ENSMUST00000097593.2|Arhgap26|ENSMUSG00000036452.11|Rho GTPase activating protein 26
mm10_v2_chr8_-_115707778_115707794	0.0658829	GAGAUGA	ENSMUST00000109104.1|Maf|ENSMUSG00000055435.6|avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog
mm10_v2_chr6_-_82774448_82774463	0.0618652	GAGAUGA	ENSMUST00000000642.4|Hk2|ENSMUSG00000000628.4|hexokinase 2
mm10_v2_chr12_-_119238794_119238863	0.0594028	GAGAUGA	ENSMUST00000026360.8|Itgb8|ENSMUSG00000025321.8|integrin beta 8
mm10_v2_chr2_+_78869009_78869109	0.0567226	GAGAUGA	ENSMUST00000028398.7|Ube2e3|ENSMUSG00000027011.8|ubiquitin-conjugating enzyme E2E 3
mm10_v2_chr8_+_31111816_31111891	0.0550558	GAGAUGA	ENSMUST00000046941.7|Rnf122|ENSMUSG00000039328.9|ring finger protein 122
mm10_v2_chr1_-_72874877_72874891	0.0539834	GAGAUGA	ENSMUST00000027377.8|Igfbp5|ENSMUSG00000026185.8|insulin-like growth factor binding protein 5
mm10_v2_chr7_+_58658181_58658294	0.0536651	GAGAUGA	ENSMUST00000168747.1|Atp10a|ENSMUSG00000025324.7|ATPase, class V, type 10A
mm10_v2_chr5_+_75152274_75152297	0.0517019	GAGAUGA	ENSMUST00000000476.8|Pdgfra|ENSMUSG00000029231.9|platelet derived growth factor receptor, alpha polypeptide
mm10_v2_chr1_+_150100093_150100124	0.049104	GAGAUGA	ENSMUST00000035065.7|Ptgs2|ENSMUSG00000032487.7|prostaglandin-endoperoxide synthase 2
mm10_v2_chr4_+_141420757_141420798	0.0454995	GAGAUGA	ENSMUST00000102486.4|Hspb7|ENSMUSG00000006221.7|heat shock protein family, member 7 (cardiovascular)
mm10_v2_chr11_+_61022560_61022570	0.0442437	GAGAUGA	ENSMUST00000089184.4|Kcnj12|ENSMUSG00000042529.8|potassium inwardly-rectifying channel, subfamily J, member 12
mm10_v2_chr2_+_126034647_126034665	0.0410916	GAGAUGA	ENSMUST00000064794.7|Fgf7|ENSMUSG00000027208.8|fibroblast growth factor 7
mm10_v2_chr19_+_56287911_56287936	0.036831	GAGAUGA	ENSMUST00000095948.4|Habp2|ENSMUSG00000025075.8|hyaluronic acid binding protein 2
mm10_v2_chr7_+_19119853_19119913	0.0364107	GAGAUGA	ENSMUST00000053109.3|Fbxo46|ENSMUSG00000050428.6|F-box protein 46
mm10_v2_chr9_+_108392820_108392843	0.0337586	GAGAUGA	ENSMUST00000035234.4|1700102P08Rik|ENSMUSG00000032611.4|RIKEN cDNA 1700102P08 gene
mm10_v2_chr11_-_61494173_61494296	0.0336727	GAGAUGA	ENSMUST00000101085.2|Mapk7|ENSMUSG00000001034.11|mitogen-activated protein kinase 7 	ENSMUST00000079080.6|Mapk7|ENSMUSG00000001034.11|mitogen-activated protein kinase 7 	ENSMUST00000108714.1|Mapk7|ENSMUSG00000001034.11|mitogen-activated protein kinase 7
mm10_v2_chr15_-_11905609_11905674	0.0318922	GAGAUGA	ENSMUST00000066529.3|Npr3|ENSMUSG00000022206.6|natriuretic peptide receptor 3
mm10_v2_chr19_-_17356631_17356667	0.0300435	GAGAUGA	ENSMUST00000174236.1|Gcnt1|ENSMUSG00000038843.11|glucosaminyl (N-acetyl) transferase 1, core 2
mm10_v2_chr4_+_62965560_62965617	0.0299393	GAGAUGA	ENSMUST00000030043.6|Zfp618|ENSMUSG00000028358.9|zinc finger protein 618 	ENSMUST00000107415.1|Zfp618|ENSMUSG00000028358.9|zinc finger protein 618 	ENSMUST00000064814.5|Zfp618|ENSMUSG00000028358.9|zinc finger protein 618
mm10_v2_chr15_-_102722150_102722178	0.0296663	GAGAUGA	ENSMUST00000023818.3|Calcoco1|ENSMUSG00000023055.3|calcium binding and coiled coil domain 1
mm10_v2_chr10_+_121365078_121365158	0.0293422	GAGAUGA	ENSMUST00000040344.6|Gns|ENSMUSG00000034707.6|glucosamine (N-acetyl)-6-sulfatase
mm10_v2_chr7_+_75455534_75455629	0.0265882	GAGAUGA	ENSMUST00000147005.1|Akap13|ENSMUSG00000066406.8|A kinase (PRKA) anchor protein 13 	ENSMUST00000166315.1|Akap13|ENSMUSG00000066406.8|A kinase (PRKA) anchor protein 13
mm10_v2_chr14_-_60086832_60086890	0.0263718	GAGAUGA	ENSMUST00000080368.5|Atp8a2|ENSMUSG00000021983.9|ATPase, aminophospholipid transporter-like, class I, type 8A, member 2
mm10_v2_chr18_+_38418946_38418985	0.0241773	GAGAUGA	ENSMUST00000025293.3|Ndfip1|ENSMUSG00000024425.3|Nedd4 family interacting protein 1
mm10_v2_chr13_+_15463837_15463980	0.0229774	GAGAUGA	ENSMUST00000110510.3|Gli3|ENSMUSG00000021318.9|GLI-Kruppel family member GLI3
mm10_v2_chr16_-_33056174_33056218	0.021977	GAGAUGA	ENSMUST00000115100.1|Iqcg|ENSMUSG00000035578.9|IQ motif containing G 	ENSMUST00000040309.8|Iqcg|ENSMUSG00000035578.9|IQ motif containing G
mm10_v2_chr2_-_64097994_64098023	0.0217138	GAGAUGA	ENSMUST00000131615.2|Fign|ENSMUSG00000075324.7|fidgetin
mm10_v2_chr19_-_47464406_47464450	0.0212182	GAGAUGA	ENSMUST00000111800.2|Sh3pxd2a|ENSMUSG00000053617.5|SH3 and PX domains 2A 	ENSMUST00000081619.2|Sh3pxd2a|ENSMUSG00000053617.5|SH3 and PX domains 2A
mm10_v2_chr6_+_113483297_113483316	0.0211131	GAGAUGA	ENSMUST00000032422.5|Creld1|ENSMUSG00000030284.5|cysteine-rich with EGF-like domains 1
mm10_v2_chr4_+_100776664_100776692	0.0210928	GAGAUGA	ENSMUST00000030257.8|Cachd1|ENSMUSG00000028532.8|cache domain containing 1 	ENSMUST00000097955.2|Cachd1|ENSMUSG00000028532.8|cache domain containing 1
mm10_v2_chr8_+_84415348_84415392	0.0201853	GAGAUGA	ENSMUST00000121390.1|Cacna1a|ENSMUSG00000034656.10|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit 	ENSMUST00000122053.1|Cacna1a|ENSMUSG00000034656.10|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
mm10_v2_chr11_+_117654798_117654824	0.0199102	GAGAUGA	ENSMUST00000106344.1|Tnrc6c|ENSMUSG00000025571.7|trinucleotide repeat containing 6C
mm10_v2_chr4_+_31964081_31964263	0.0191801	GAGAUGA	ENSMUST00000037607.4|Map3k7|ENSMUSG00000028284.7|mitogen-activated protein kinase kinase kinase 7 	ENSMUST00000080933.6|Map3k7|ENSMUSG00000028284.7|mitogen-activated protein kinase kinase kinase 7 	ENSMUST00000108183.1|Map3k7|ENSMUSG00000028284.7|mitogen-activated protein kinase kinase kinase 7 	ENSMUST00000108184.2|Map3k7|ENSMUSG00000028284.7|mitogen-activated protein kinase kinase kinase 7
mm10_v2_chr12_+_55565188_55565257	0.0185068	GAGAUGA	ENSMUST00000080123.1|Aldoart2|ENSMUSG00000063129.1|aldolase 1 A, retrogene 2
mm10_v2_chr10_-_59441748_59441782	0.0184859	GAGAUGA	ENSMUST00000009798.4|Oit3|ENSMUSG00000009654.4|oncoprotein induced transcript 3
mm10_v2_chr7_+_80343091_80343146	0.0180931	GAGAUGA	ENSMUST00000032747.5|Hddc3|ENSMUSG00000030532.5|HD domain containing 3
mm10_v2_chr11_-_96977660_96977711	0.0174819	GAGAUGA	ENSMUST00000107626.1|Sp2|ENSMUSG00000018678.6|Sp2 transcription factor 	ENSMUST00000107624.1|Sp2|ENSMUSG00000018678.6|Sp2 transcription factor
mm10_v2_chr2_+_71786923_71786978	0.0170723	GAGAUGA	ENSMUST00000112101.1|Itga6|ENSMUSG00000027111.9|integrin alpha 6 	ENSMUST00000028522.3|Itga6|ENSMUSG00000027111.9|integrin alpha 6
mm10_v2_chr1_-_45503282_45503282	0.0169959	GAGAUGA	ENSMUST00000086430.4|Col5a2|ENSMUSG00000026042.10|collagen, type V, alpha 2
mm10_v2_chr9_-_107289847_107289877	0.0168363	GAGAUGA	ENSMUST00000035194.2|Mapkapk3|ENSMUSG00000032577.10|mitogen-activated protein kinase-activated protein kinase 3
mm10_v2_chr11_-_29515017_29515040	0.0168311	GAGAUGA	ENSMUST00000133103.1|Prorsd1|ENSMUSG00000032673.5|prolyl-tRNA synthetase domain containing 1 	ENSMUST00000039900.3|Prorsd1|ENSMUSG00000032673.5|prolyl-tRNA synthetase domain containing 1
mm10_v2_chr9_+_80165013_80165055	0.0164295	GAGAUGA	ENSMUST00000035889.8|Myo6|ENSMUSG00000033577.12|myosin VI 	ENSMUST00000113268.1|Myo6|ENSMUSG00000033577.12|myosin VI
mm10_v2_chr12_+_52699297_52699411	0.0161844	GAGAUGA	ENSMUST00000095737.3|Akap6|ENSMUSG00000061603.7|A kinase (PRKA) anchor protein 6
mm10_v2_chr9_-_62537036_62537061	0.016109	GAGAUGA	ENSMUST00000048043.5|Coro2b|ENSMUSG00000041729.9|coronin, actin binding protein, 2B
mm10_v2_chr14_-_15438974_15439002	0.0156396	GAGAUGA	ENSMUST00000055211.4|Lrrc3b|ENSMUSG00000045201.5|leucine rich repeat containing 3B
mm10_v2_chr19_+_4510472_4510487	0.015556	GAGAUGA	ENSMUST00000068004.6|Pcx|ENSMUSG00000024892.9|pyruvate carboxylase
mm10_v2_chr15_-_97831460_97831519	0.0155135	GAGAUGA	ENSMUST00000079838.7|Hdac7|ENSMUSG00000022475.12|histone deacetylase 7 	ENSMUST00000118294.1|Hdac7|ENSMUSG00000022475.12|histone deacetylase 7
mm10_v2_chr6_-_38876163_38876234	0.0154604	GAGAUGA	ENSMUST00000161779.1|Hipk2|ENSMUSG00000061436.9|homeodomain interacting protein kinase 2
mm10_v2_chrX_+_7822289_7822289	0.0154345	GAGAUGA	ENSMUST00000009875.4|Kcnd1|ENSMUSG00000009731.4|potassium voltage-gated channel, Shal-related family, member 1
mm10_v2_chr2_+_113327711_113327753	0.0154194	GAGAUGA	ENSMUST00000099576.2|Fmn1|ENSMUSG00000044042.12|formin 1
mm10_v2_chr11_+_75193783_75193864	0.0154045	GAGAUGA	ENSMUST00000102514.3|Rtn4rl1|ENSMUSG00000045287.6|reticulon 4 receptor-like 1
mm10_v2_chr2_+_173737492_173737511	0.0149463	GAGAUGA	ENSMUST00000067530.4|Vapb|ENSMUSG00000054455.4|vesicle-associated membrane protein, associated protein B and C
mm10_v2_chr11_+_97799565_97799581	0.0145544	GAGAUGA	ENSMUST00000043843.5|Lasp1|ENSMUSG00000038366.9|LIM and SH3 protein 1
mm10_v2_chr4_-_70534904_70534987	0.0141924	GAGAUGA	ENSMUST00000107359.2|Megf9|ENSMUSG00000039270.3|multiple EGF-like-domains 9
mm10_v2_chr17_-_73950172_73950189	0.0141463	GAGAUGA	ENSMUST00000024866.4|Xdh|ENSMUSG00000024066.8|xanthine dehydrogenase
mm10_v2_chr4_+_20008357_20008451	0.0140673	GAGAUGA	ENSMUST00000117632.1|Ttpa|ENSMUSG00000073988.7|tocopherol (alpha) transfer protein 	ENSMUST00000098244.1|Ttpa|ENSMUSG00000073988.7|tocopherol (alpha) transfer protein
mm10_v2_chr5_+_43233463_43233491	0.0139409	GAGAUGA	ENSMUST00000169035.1|Cpeb2|ENSMUSG00000039782.8|cytoplasmic polyadenylation element binding protein 2 	ENSMUST00000166713.1|Cpeb2|ENSMUSG00000039782.8|cytoplasmic polyadenylation element binding protein 2
mm10_v2_chr6_-_145250177_145250259	0.0139358	GAGAUGA	ENSMUST00000111710.1|Kras|ENSMUSG00000030265.8|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog 	ENSMUST00000155145.1|Kras|ENSMUSG00000030265.8|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog 	ENSMUST00000032399.5|Kras|ENSMUSG00000030265.8|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog
mm10_v2_chr9_-_101251810_101251839	0.0139013	GAGAUGA	ENSMUST00000075941.5|Ppp2r3a|ENSMUSG00000043154.9|protein phosphatase 2, regulatory subunit B'', alpha
mm10_v2_chr9_+_75775355_75775378	0.0137671	GAGAUGA	ENSMUST00000012281.7|Bmp5|ENSMUSG00000032179.7|bone morphogenetic protein 5
mm10_v2_chr12_-_83921899_83921934	0.0135082	GAGAUGA	ENSMUST00000117217.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila)
mm10_v2_chr4_-_58206596_58206616	0.0133846	GAGAUGA	ENSMUST00000042850.8|Svep1|ENSMUSG00000028369.9|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
mm10_v2_chr3_-_27710413_27710467	0.0133777	GAGAUGA	ENSMUST00000046157.4|Fndc3b|ENSMUSG00000039286.7|fibronectin type III domain containing 3B
mm10_v2_chr3_+_130180882_130180899	0.0132458	GAGAUGA	ENSMUST00000106353.1|Col25a1|ENSMUSG00000058897.11|collagen, type XXV, alpha 1 	ENSMUST00000080335.4|Col25a1|ENSMUSG00000058897.11|collagen, type XXV, alpha 1
mm10_v2_chr1_+_36511867_36511903	0.0127389	GAGAUGA	ENSMUST00000001166.7|Cnnm3|ENSMUSG00000001138.7|cyclin M3 	ENSMUST00000097776.3|Cnnm3|ENSMUSG00000001138.7|cyclin M3
mm10_v2_chr2_-_150485091_150485091	0.0127365	GAGAUGA	ENSMUST00000109914.1|Zfp345|ENSMUSG00000074731.3|zinc finger protein 345
mm10_v2_chr2_+_180710117_180710201	0.0124683	GAGAUGA	ENSMUST00000029090.2|Gid8|ENSMUSG00000027573.5|GID complex subunit 8 homolog (S. cerevisiae)
mm10_v2_chr9_-_53975246_53975348	0.0120347	GAGAUGA	ENSMUST00000048409.7|Elmod1|ENSMUSG00000041986.9|ELMO/CED-12 domain containing 1
mm10_v2_chr3_+_107101551_107101567	0.0119393	GAGAUGA	ENSMUST00000038695.1|Kcna2|ENSMUSG00000040724.1|potassium voltage-gated channel, shaker-related subfamily, member 2
mm10_v2_chr11_+_61684419_61684454	0.0116449	GAGAUGA	ENSMUST00000093019.5|Fam83g|ENSMUSG00000042377.8|family with sequence similarity 83, member G
mm10_v2_chr7_+_44384098_44384154	0.0113675	GAGAUGA	ENSMUST00000118962.1|Syt3|ENSMUSG00000030731.7|synaptotagmin III 	ENSMUST00000118831.1|Syt3|ENSMUSG00000030731.7|synaptotagmin III
mm10_v2_chr8_+_40511769_40511787	0.0111989	GAGAUGA	ENSMUST00000098817.2|Vps37a|ENSMUSG00000031600.10|vacuolar protein sorting 37A (yeast)
mm10_v2_chr4_-_132422484_132422497	0.0105276	GAGAUGA	ENSMUST00000102568.3|Phactr4|ENSMUSG00000066043.7|phosphatase and actin regulator 4
mm10_v2_chr4_-_126968124_126968154	0.0105023	GAGAUGA	ENSMUST00000106108.2|Zmym4|ENSMUSG00000042446.10|zinc finger, MYM-type 4
mm10_v2_chr5_-_143732273_143732316	0.0104823	GAGAUGA	ENSMUST00000053287.5|Usp42|ENSMUSG00000051306.7|ubiquitin specific peptidase 42
mm10_v2_chr11_-_34783850_34783900	0.0104656	GAGAUGA	ENSMUST00000093193.5|Dock2|ENSMUSG00000020143.9|dedicator of cyto-kinesis 2 	ENSMUST00000101365.2|Dock2|ENSMUSG00000020143.9|dedicator of cyto-kinesis 2
mm10_v2_chr12_+_24831583_24831658	0.0101527	GAGAUGA	ENSMUST00000110942.3|Mboat2|ENSMUSG00000020646.10|membrane bound O-acyltransferase domain containing 2 	ENSMUST00000078902.6|Mboat2|ENSMUSG00000020646.10|membrane bound O-acyltransferase domain containing 2
mm10_v2_chr15_-_50889691_50889714	0.010025	GAGAUGA	ENSMUST00000165201.2|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human) 	ENSMUST00000184458.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr10_+_17796256_17796339	0.00990372	GAGAUGA	ENSMUST00000037964.6|Txlnb|ENSMUSG00000039891.6|taxilin beta
mm10_v2_chr5_+_142960343_142960363	0.00957674	GAGAUGA	ENSMUST00000031565.8|Fscn1|ENSMUSG00000029581.8|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)
mm10_v2_chr8_+_79639618_79639730	0.00944526	GAGAUGA	ENSMUST00000173078.1|Otud4|ENSMUSG00000036990.7|OTU domain containing 4 	ENSMUST00000173286.1|Otud4|ENSMUSG00000036990.7|OTU domain containing 4
mm10_v2_chr1_+_194619815_194619833	0.00939602	GAGAUGA	ENSMUST00000027952.5|Plxna2|ENSMUSG00000026640.6|plexin A2
mm10_v2_chr1_-_157412576_157412621	0.00933453	GAGAUGA	ENSMUST00000078308.6|Rasal2|ENSMUSG00000070565.5|RAS protein activator like 2 	ENSMUST00000139470.1|Rasal2|ENSMUSG00000070565.5|RAS protein activator like 2
mm10_v2_chr8_-_105827190_105827350	0.00903723	GAGAUGA	ENSMUST00000041400.5|Ranbp10|ENSMUSG00000037415.5|RAN binding protein 10
mm10_v2_chr3_-_116007399_116007411	0.00878356	GAGAUGA	ENSMUST00000067485.3|Slc30a7|ENSMUSG00000054414.3|solute carrier family 30 (zinc transporter), member 7
mm10_v2_chr8_-_67974567_67974596	0.00841153	GAGAUGA	ENSMUST00000098696.3|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000038959.9|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000093469.4|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr12_-_105685235_105685310	0.00813824	GAGAUGA	ENSMUST00000041055.7|Atg2b|ENSMUSG00000041341.9|autophagy related 2B
mm10_v2_chr4_-_120747248_120747404	0.00796434	GAGAUGA	ENSMUST00000030376.7|Kcnq4|ENSMUSG00000028631.7|potassium voltage-gated channel, subfamily Q, member 4
mm10_v2_chr5_+_103754154_103754188	0.00768758	GAGAUGA	ENSMUST00000054979.3|Aff1|ENSMUSG00000029313.12|AF4/FMR2 family, member 1
mm10_v2_chr11_+_105292637_105292669	0.00755781	GAGAUGA	ENSMUST00000100335.3|Mrc2|ENSMUSG00000020695.8|mannose receptor, C type 2 	ENSMUST00000021038.4|Mrc2|ENSMUSG00000020695.8|mannose receptor, C type 2
mm10_v2_chr2_-_161109017_161109027	0.0075272	GAGAUGA	ENSMUST00000039782.7|Chd6|ENSMUSG00000057133.8|chromodomain helicase DNA binding protein 6 	ENSMUST00000134178.1|Chd6|ENSMUSG00000057133.8|chromodomain helicase DNA binding protein 6
mm10_v2_chr7_+_67952817_67952859	0.0074356	GAGAUGA	ENSMUST00000005671.8|Igf1r|ENSMUSG00000005533.9|insulin-like growth factor I receptor
mm10_v2_chr6_-_85069449_85069523	0.00743299	GAGAUGA	ENSMUST00000160783.1|Exoc6b|ENSMUSG00000033769.10|exocyst complex component 6B 	ENSMUST00000160197.1|Exoc6b|ENSMUSG00000033769.10|exocyst complex component 6B
mm10_v2_chr11_-_86683761_86683847	0.00735414	GAGAUGA	ENSMUST00000018315.3|Vmp1|ENSMUSG00000018171.3|vacuole membrane protein 1
mm10_v2_chr7_+_28179469_28179535	0.00706174	GAGAUGA	ENSMUST00000085901.6|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b 	ENSMUST00000172761.1|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm10_v2_chr13_+_112660739_112660795	0.00688413	GAGAUGA	ENSMUST00000052514.4|Slc38a9|ENSMUSG00000047789.4|solute carrier family 38, member 9
mm10_v2_chr12_-_85339346_85339391	0.00681488	GAGAUGA	ENSMUST00000040992.7|Nek9|ENSMUSG00000034290.9|NIMA (never in mitosis gene a)-related expressed kinase 9
mm10_v2_chr4_-_35845204_35845204	0.00650803	GAGAUGA	ENSMUST00000164772.1|Lingo2|ENSMUSG00000045083.8|leucine rich repeat and Ig domain containing 2 	ENSMUST00000065173.2|Lingo2|ENSMUSG00000045083.8|leucine rich repeat and Ig domain containing 2
mm10_v2_chr11_-_47379405_47379522	0.00622353	GAGAUGA	ENSMUST00000077221.5|Sgcd|ENSMUSG00000020354.9|sarcoglycan, delta (dystrophin-associated glycoprotein)
mm10_v2_chr7_+_16309577_16309641	0.00604808	GAGAUGA	ENSMUST00000002152.6|Bbc3|ENSMUSG00000002083.6|BCL2 binding component 3
mm10_v2_chr7_-_126884678_126884728	0.00592132	GAGAUGA	ENSMUST00000071268.4|Taok2|ENSMUSG00000059981.5|TAO kinase 2 	ENSMUST00000117394.1|Taok2|ENSMUSG00000059981.5|TAO kinase 2
mm10_v2_chr18_+_44380479_44380554	0.00553769	GAGAUGA	ENSMUST00000025350.8|Dcp2|ENSMUSG00000024472.8|DCP2 decapping enzyme homolog (S. cerevisiae)
mm10_v2_chr12_+_4769278_4769338	0.0053329	GAGAUGA	ENSMUST00000020967.4|Pfn4|ENSMUSG00000020639.7|profilin family, member 4
mm10_v2_chr11_+_105589970_105590028	0.00489997	GAGAUGA	ENSMUST00000168598.1|Tanc2|ENSMUSG00000053580.9|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 	ENSMUST00000100330.3|Tanc2|ENSMUSG00000053580.9|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm10_v2_chr6_-_143947092_143947111	0.00488584	GAGAUGA	ENSMUST00000144289.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5 	ENSMUST00000111748.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr12_+_3807017_3807063	0.00486376	GAGAUGA	ENSMUST00000020991.8|Dnmt3a|ENSMUSG00000020661.9|DNA methyltransferase 3A 	ENSMUST00000172509.1|Dnmt3a|ENSMUSG00000020661.9|DNA methyltransferase 3A
mm10_v2_chr2_+_83644435_83644490	0.00474624	GAGAUGA	ENSMUST00000081591.6|Zc3h15|ENSMUSG00000027091.8|zinc finger CCCH-type containing 15
mm10_v2_chr6_-_71440623_71440645	0.00462998	GAGAUGA	ENSMUST00000002292.8|Rmnd5a|ENSMUSG00000002222.8|required for meiotic nuclear division 5 homolog A (S. cerevisiae)
mm10_v2_chr8_-_124949165_124949372	0.00458102	GAGAUGA	ENSMUST00000034469.5|Egln1|ENSMUSG00000031987.5|EGL nine homolog 1 (C. elegans)
mm10_v2_chr7_+_27862557_27862557	0.00391347	GAGAUGA	ENSMUST00000053722.8|Zfp607|ENSMUSG00000020420.7|zinc finger proten 607
mm10_v2_chr7_-_109986445_109986480	0.00391265	GAGAUGA	ENSMUST00000094097.5|Tmem41b|ENSMUSG00000047554.7|transmembrane protein 41B
mm10_v2_chr9_-_20815048_20815069	0.00385495	GAGAUGA	ENSMUST00000004201.7|Col5a3|ENSMUSG00000004098.7|collagen, type V, alpha 3
mm10_v2_chr6_-_101377897_101378016	0.00382048	GAGAUGA	ENSMUST00000075994.6|Pdzrn3|ENSMUSG00000035357.10|PDZ domain containing RING finger 3
mm10_v2_chr15_-_103239812_103239888	0.0036119	GAGAUGA	ENSMUST00000118152.1|Cbx5|ENSMUSG00000009575.8|chromobox 5
mm10_v2_chr3_+_30792876_30792876	0.00333531	GAGAUGA	ENSMUST00000029256.7|Sec62|ENSMUSG00000027706.7|SEC62 homolog (S. cerevisiae)
mm10_v2_chr15_+_37233036_37233073	0.00320648	GAGAUGA	ENSMUST00000161405.1|Grhl2|ENSMUSG00000022286.9|grainyhead-like 2 (Drosophila) 	ENSMUST00000022895.8|Grhl2|ENSMUSG00000022286.9|grainyhead-like 2 (Drosophila) 	ENSMUST00000161532.1|Grhl2|ENSMUSG00000022286.9|grainyhead-like 2 (Drosophila)
mm10_v2_chr9_+_45838572_45838592	0.00318755	GAGAUGA	ENSMUST00000078111.4|Bace1|ENSMUSG00000032086.6|beta-site APP cleaving enzyme 1 	ENSMUST00000034591.4|Bace1|ENSMUSG00000032086.6|beta-site APP cleaving enzyme 1
mm10_v2_chr1_+_180726019_180726106	0.00307055	GAGAUGA	ENSMUST00000027780.4|Acbd3|ENSMUSG00000026499.4|acyl-Coenzyme A binding domain containing 3
mm10_v2_chr2_+_113441064_113441079	0.00270239	GAGAUGA	ENSMUST00000081349.6|Fmn1|ENSMUSG00000044042.12|formin 1
mm10_v2_chr7_+_97579868_97579901	0.00265183	GAGAUGA	ENSMUST00000042399.7|Rsf1|ENSMUSG00000035623.8|remodeling and spacing factor 1 	ENSMUST00000107153.1|Rsf1|ENSMUSG00000035623.8|remodeling and spacing factor 1
mm10_v2_chr2_-_132247623_132247654	0.00244229	GAGAUGA	ENSMUST00000110164.1|Tmem230|ENSMUSG00000027341.4|transmembrane protein 230
mm10_v2_chr17_-_10319324_10319380	0.002344	GAGAUGA	ENSMUST00000097414.3|Qk|ENSMUSG00000062078.8|quaking 	ENSMUST00000042296.7|Qk|ENSMUSG00000062078.8|quaking
mm10_v2_chr15_-_100495239_100495267	0.00228866	GAGAUGA	ENSMUST00000061457.5|Csrnp2|ENSMUSG00000044636.5|cysteine-serine-rich nuclear protein 2
mm10_v2_chr6_+_100704709_100704742	0.00190571	GAGAUGA	ENSMUST00000032157.7|Gxylt2|ENSMUSG00000030074.8|glucoside xylosyltransferase 2
mm10_v2_chr5_+_103425181_103425197	0.0018427	GAGAUGA	ENSMUST00000048957.9|Ptpn13|ENSMUSG00000034573.10|protein tyrosine phosphatase, non-receptor type 13
mm10_v2_chr14_+_65358661_65358691	0.00174455	GAGAUGA	ENSMUST00000066994.6|Zfp395|ENSMUSG00000034522.9|zinc finger protein 395
mm10_v2_chr15_-_103255433_103255445	0.0017244	GAGAUGA	ENSMUST00000075192.6|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2
mm10_v2_chr7_-_116038734_116038750	0.00169904	GAGAUGA	ENSMUST00000166877.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chrX_+_73342614_73342629	0.00151183	GAGAUGA	ENSMUST00000114499.1|Zfp275|ENSMUSG00000031365.7|zinc finger protein 275 	ENSMUST00000033731.3|Zfp275|ENSMUSG00000031365.7|zinc finger protein 275
mm10_v2_chr10_-_43174521_43174569	0.00145996	GAGAUGA	ENSMUST00000040275.7|Sobp|ENSMUSG00000038248.7|sine oculis-binding protein homolog (Drosophila)
mm10_v2_chr4_+_132274369_132274383	0.00130426	GAGAUGA	ENSMUST00000030731.4|Taf12|ENSMUSG00000028899.5|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chrX_-_144688180_144688180	0.00128781	GAGAUGA	ENSMUST00000040184.3|Trpc5|ENSMUSG00000041710.4|transient receptor potential cation channel, subfamily C, member 5
mm10_v2_chr15_-_58324161_58324178	0.00124825	GAGAUGA	ENSMUST00000022985.1|Klhl38|ENSMUSG00000022357.2|kelch-like 38
mm10_v2_chr11_-_95309557_95309602	0.00104469	GAGAUGA	ENSMUST00000092766.5|Kat7|ENSMUSG00000038909.10|K(lysine) acetyltransferase 7 	ENSMUST00000072621.5|Kat7|ENSMUSG00000038909.10|K(lysine) acetyltransferase 7
mm10_v2_chr5_-_123749371_123749391	0.000912756	GAGAUGA	ENSMUST00000182955.1|Rsrc2|ENSMUSG00000029422.8|arginine/serine-rich coiled-coil 2 	ENSMUST00000182489.1|Rsrc2|ENSMUSG00000029422.8|arginine/serine-rich coiled-coil 2 	ENSMUST00000050827.7|Rsrc2|ENSMUSG00000029422.8|arginine/serine-rich coiled-coil 2
mm10_v2_chr5_+_67260565_67260692	0.000777763	GAGAUGA	ENSMUST00000037918.5|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33 	ENSMUST00000162543.1|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33
mm10_v2_chr16_-_46496955_46496986	0.000772276	GAGAUGA	ENSMUST00000023335.6|Pvrl3|ENSMUSG00000022656.9|poliovirus receptor-related 3 	ENSMUST00000023334.8|Pvrl3|ENSMUSG00000022656.9|poliovirus receptor-related 3
mm10_v2_chr16_-_44139196_44139305	0.000768211	GAGAUGA	ENSMUST00000063661.6|Atp6v1a|ENSMUSG00000052459.7|ATPase, H+ transporting, lysosomal V1 subunit A 	ENSMUST00000114666.2|Atp6v1a|ENSMUSG00000052459.7|ATPase, H+ transporting, lysosomal V1 subunit A
mm10_v2_chr9_-_35558522_35558548	0.000758325	GAGAUGA	ENSMUST00000034612.5|Ddx25|ENSMUSG00000032101.5|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25
mm10_v2_chr18_-_20896078_20896078	0.000476795	GAGAUGA	ENSMUST00000025177.6|Trappc8|ENSMUSG00000033382.7|trafficking protein particle complex 8 	ENSMUST00000097658.1|Trappc8|ENSMUSG00000033382.7|trafficking protein particle complex 8
mm10_v2_chr11_+_30771726_30771792	0.00045441	GAGAUGA	ENSMUST00000041231.7|Psme4|ENSMUSG00000040850.11|proteasome (prosome, macropain) activator subunit 4
mm10_v2_chr2_-_155930018_155930066	0.000316073	GAGAUGA	ENSMUST00000152766.1|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1 	ENSMUST00000139232.1|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1 	ENSMUST00000109632.1|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1 	ENSMUST00000006036.6|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1 	ENSMUST00000142655.1|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1 	ENSMUST00000159238.1|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1
mm10_v2_chr1_-_63114516_63114667	2.51346e-05	GAGAUGA	ENSMUST00000097718.2|Ino80d|ENSMUSG00000040865.9|INO80 complex subunit D
mm10_v2_chr18_+_73573044_73573044	1.45819e-05	GAGAUGA	ENSMUST00000091852.4|Mex3c|ENSMUSG00000037253.8|mex3 homolog C (C. elegans)
