mm10_v2_chr14_+_45351473_45351473	0.388567	GCAGCAU	ENSMUST00000111835.2|Styx|ENSMUSG00000053205.8|serine/threonine/tyrosine interaction protein
mm10_v2_chr5_+_30711564_30711586	0.368843	GCAGCAU	ENSMUST00000114729.1|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5
mm10_v2_chr9_-_61946768_61946799	0.331121	GCAGCAU	ENSMUST00000034815.7|Kif23|ENSMUSG00000032254.9|kinesin family member 23
mm10_v2_chr3_-_73056943_73056943	0.31957	GCAGCAU	ENSMUST00000059407.7|Slitrk3|ENSMUSG00000048304.7|SLIT and NTRK-like family, member 3
mm10_v2_chr2_-_110950923_110950923	0.257549	GCAGCAU	ENSMUST00000099623.3|Ano3|ENSMUSG00000074968.5|anoctamin 3
mm10_v2_chr19_+_41482632_41482688	0.248836	GCAGCAU	ENSMUST00000067795.5|Lcor|ENSMUSG00000025019.9|ligand dependent nuclear receptor corepressor
mm10_v2_chr18_-_43687695_43687773	0.224714	GCAGCAU	ENSMUST00000082254.6|Jakmip2|ENSMUSG00000024502.9|janus kinase and microtubule interacting protein 2
mm10_v2_chr4_+_101419277_101419332	0.206539	GCAGCAU	ENSMUST00000102780.1|Ak4|ENSMUSG00000028527.12|adenylate kinase 4 	ENSMUST00000106946.1|Ak4|ENSMUSG00000028527.12|adenylate kinase 4 	ENSMUST00000106945.1|Ak4|ENSMUSG00000028527.12|adenylate kinase 4
mm10_v2_chr11_+_98907801_98907824	0.202751	GCAGCAU	ENSMUST00000092706.6|Cdc6|ENSMUSG00000017499.9|cell division cycle 6
mm10_v2_chr15_+_102073773_102073903	0.178907	GCAGCAU	ENSMUST00000169681.1|Eif4b|ENSMUSG00000058655.8|eukaryotic translation initiation factor 4B
mm10_v2_chr1_-_9700209_9700329	0.158648	GCAGCAU	ENSMUST00000088658.4|Mybl1|ENSMUSG00000025912.10|myeloblastosis oncogene-like 1
mm10_v2_chr2_+_65620829_65620857	0.158322	GCAGCAU	ENSMUST00000028377.7|Scn2a1|ENSMUSG00000075318.6|sodium channel, voltage-gated, type II, alpha 1
mm10_v2_chr11_-_90390895_90390926	0.156292	GCAGCAU	ENSMUST00000004051.7|Hlf|ENSMUSG00000003949.10|hepatic leukemia factor
mm10_v2_chr9_+_72532214_72532271	0.154196	GCAGCAU	ENSMUST00000163401.2|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7 	ENSMUST00000093820.3|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7
mm10_v2_chr7_-_38107490_38107534	0.151769	GCAGCAU	ENSMUST00000108023.3|Ccne1|ENSMUSG00000002068.10|cyclin E1
mm10_v2_chr2_-_152951456_152951540	0.150416	GCAGCAU	ENSMUST00000123121.2|Dusp15|ENSMUSG00000042662.10|dual specificity phosphatase-like 15
mm10_v2_chr16_-_30388530_30388530	0.147633	GCAGCAU	ENSMUST00000100013.2|Atp13a3|ENSMUSG00000022533.7|ATPase type 13A3 	ENSMUST00000061350.6|Atp13a3|ENSMUSG00000022533.7|ATPase type 13A3
mm10_v2_chr13_+_49682100_49682169	0.144853	GCAGCAU	ENSMUST00000165316.1|Iars|ENSMUSG00000037851.7|isoleucine-tRNA synthetase 	ENSMUST00000047363.7|Iars|ENSMUSG00000037851.7|isoleucine-tRNA synthetase
mm10_v2_chr14_+_116925291_116925362	0.142196	GCAGCAU	ENSMUST00000078849.4|Gpc6|ENSMUSG00000058571.4|glypican 6
mm10_v2_chrX_-_142966709_142966734	0.141353	GCAGCAU	ENSMUST00000041317.2|Ammecr1|ENSMUSG00000042225.3|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
mm10_v2_chr1_+_171767123_171767138	0.141084	GCAGCAU	ENSMUST00000015460.4|Slamf1|ENSMUSG00000015316.10|signaling lymphocytic activation molecule family member 1
mm10_v2_chr3_+_51415986_51416044	0.139995	GCAGCAU	ENSMUST00000029303.7|Naa15|ENSMUSG00000063273.6|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm10_v2_chr3_+_129532386_129532440	0.139869	GCAGCAU	ENSMUST00000071402.2|Elovl6|ENSMUSG00000041220.6|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm10_v2_chr2_+_5951440_5951469	0.139016	GCAGCAU	ENSMUST00000060092.6|Upf2|ENSMUSG00000043241.8|UPF2 regulator of nonsense transcripts homolog (yeast)
mm10_v2_chr19_+_18670780_18670810	0.136681	GCAGCAU	ENSMUST00000025632.9|2410127L17Rik|ENSMUSG00000024726.9|RIKEN cDNA 2410127L17 gene
mm10_v2_chr18_+_22345089_22345089	0.135455	GCAGCAU	ENSMUST00000120223.1|Asxl3|ENSMUSG00000045215.10|additional sex combs like 3 (Drosophila) 	ENSMUST00000097655.3|Asxl3|ENSMUSG00000045215.10|additional sex combs like 3 (Drosophila)
mm10_v2_chr1_+_15712303_15712303	0.13016	GCAGCAU	ENSMUST00000170146.1|Kcnb2|ENSMUSG00000090498.1|potassium voltage gated channel, Shab-related subfamily, member 2
mm10_v2_chr17_+_27556613_27556635	0.128825	GCAGCAU	ENSMUST00000117600.1|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1 	ENSMUST00000114888.3|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1
mm10_v2_chr3_-_108415552_108415552	0.125987	GCAGCAU	ENSMUST00000090558.3|Celsr2|ENSMUSG00000068740.7|cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)
mm10_v2_chr10_-_118868903_118868903	0.122657	GCAGCAU	ENSMUST00000004281.8|Dyrk2|ENSMUSG00000028630.8|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
mm10_v2_chr2_-_125859139_125859221	0.120365	GCAGCAU	ENSMUST00000110463.1|Cops2|ENSMUSG00000027206.7|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana) 	ENSMUST00000028635.5|Cops2|ENSMUSG00000027206.7|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)
mm10_v2_chr5_-_96161990_96162097	0.120014	GCAGCAU	ENSMUST00000155901.1|Cnot6l|ENSMUSG00000034724.11|CCR4-NOT transcription complex, subunit 6-like
mm10_v2_chr9_+_95559817_95559960	0.119623	GCAGCAU	ENSMUST00000079597.5|Paqr9|ENSMUSG00000064225.5|progestin and adipoQ receptor family member IX
mm10_v2_chr10_-_53379816_53379858	0.116081	GCAGCAU	ENSMUST00000095691.5|Cep85l|ENSMUSG00000038594.8|centrosomal protein 85-like
mm10_v2_chr18_-_10030017_10030146	0.115857	GCAGCAU	ENSMUST00000116669.1|Usp14|ENSMUSG00000047879.10|ubiquitin specific peptidase 14 	ENSMUST00000092096.6|Usp14|ENSMUSG00000047879.10|ubiquitin specific peptidase 14
mm10_v2_chr18_+_23954668_23954704	0.114097	GCAGCAU	ENSMUST00000060762.4|Zfp397|ENSMUSG00000024276.6|zinc finger protein 397
mm10_v2_chr13_+_46418266_46418316	0.112483	GCAGCAU	ENSMUST00000037923.3|Rbm24|ENSMUSG00000038132.5|RNA binding motif protein 24
mm10_v2_chrX_+_159532674_159532748	0.112298	GCAGCAU	ENSMUST00000057180.6|A830080D01Rik|ENSMUSG00000044150.6|RIKEN cDNA A830080D01 gene
mm10_v2_chr2_-_65567465_65567495	0.107339	GCAGCAU	ENSMUST00000066432.5|Scn3a|ENSMUSG00000057182.8|sodium channel, voltage-gated, type III, alpha
mm10_v2_chr5_+_146384947_146384994	0.103335	GCAGCAU	ENSMUST00000110600.1|Wasf3|ENSMUSG00000029636.7|WAS protein family, member 3 	ENSMUST00000016143.7|Wasf3|ENSMUSG00000029636.7|WAS protein family, member 3
mm10_v2_chr10_+_128377086_128377155	0.103179	GCAGCAU	ENSMUST00000014642.3|Ankrd52|ENSMUSG00000014498.3|ankyrin repeat domain 52
mm10_v2_chr19_+_38395980_38396022	0.1006	GCAGCAU	ENSMUST00000054098.2|Slc35g1|ENSMUSG00000044026.2|solute carrier family 35, member G1
mm10_v2_chrX_-_157492280_157492340	0.0999593	GCAGCAU	ENSMUST00000112529.1|Sms|ENSMUSG00000071708.5|spermine synthase
mm10_v2_chr16_+_45224315_45224346	0.0981454	GCAGCAU	ENSMUST00000102802.3|Btla|ENSMUSG00000052013.8|B and T lymphocyte associated 	ENSMUST00000063654.4|Btla|ENSMUSG00000052013.8|B and T lymphocyte associated
mm10_v2_chr2_+_5845017_5845062	0.0966725	GCAGCAU	ENSMUST00000026927.3|Nudt5|ENSMUSG00000025817.6|nudix (nucleoside diphosphate linked moiety X)-type motif 5 	ENSMUST00000179748.1|Nudt5|ENSMUSG00000025817.6|nudix (nucleoside diphosphate linked moiety X)-type motif 5
mm10_v2_chr9_+_102506072_102506138	0.0957832	GCAGCAU	ENSMUST00000039390.4|Ky|ENSMUSG00000035606.7|kyphoscoliosis peptidase
mm10_v2_chr15_-_73184840_73184971	0.0935515	GCAGCAU	ENSMUST00000044113.10|Ago2|ENSMUSG00000036698.10|argonaute RISC catalytic subunit 2
mm10_v2_chr8_+_22476700_22476734	0.0922729	GCAGCAU	ENSMUST00000067786.7|Slc20a2|ENSMUSG00000037656.8|solute carrier family 20, member 2
mm10_v2_chr7_-_116237767_116237781	0.0894223	GCAGCAU	ENSMUST00000182834.1|Plekha7|ENSMUSG00000045659.11|pleckstrin homology domain containing, family A member 7
mm10_v2_chr11_-_87359011_87359081	0.0890409	GCAGCAU	ENSMUST00000055438.4|Ppm1e|ENSMUSG00000046442.4|protein phosphatase 1E (PP2C domain containing)
mm10_v2_chr17_-_81649607_81649607	0.0881193	GCAGCAU	ENSMUST00000163680.2|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1 	ENSMUST00000086538.3|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1 	ENSMUST00000163123.1|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1
mm10_v2_chr10_+_83543941_83544007	0.0874584	GCAGCAU	ENSMUST00000038388.5|A230046K03Rik|ENSMUSG00000034560.5|RIKEN cDNA A230046K03 gene
mm10_v2_chr1_+_156558844_156559049	0.0856721	GCAGCAU	ENSMUST00000166172.2|Abl2|ENSMUSG00000026596.7|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene) 	ENSMUST00000027888.6|Abl2|ENSMUSG00000026596.7|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)
mm10_v2_chr7_+_16130285_16130333	0.080536	GCAGCAU	ENSMUST00000168693.1|Slc8a2|ENSMUSG00000030376.7|solute carrier family 8 (sodium/calcium exchanger), member 2
mm10_v2_chr11_-_5381734_5381745	0.078041	GCAGCAU	ENSMUST00000172492.1|Znrf3|ENSMUSG00000041961.8|zinc and ring finger 3
mm10_v2_chr3_+_145987835_145987901	0.0779712	GCAGCAU	ENSMUST00000039517.6|Syde2|ENSMUSG00000036863.7|synapse defective 1, Rho GTPase, homolog 2 (C. elegans)
mm10_v2_chr14_+_56887795_56887795	0.0764799	GCAGCAU	ENSMUST00000022511.8|Zmym2|ENSMUSG00000021945.8|zinc finger, MYM-type 2
mm10_v2_chr14_-_45388772_45388836	0.0763254	GCAGCAU	ENSMUST00000046191.7|Gnpnat1|ENSMUSG00000037722.7|glucosamine-phosphate N-acetyltransferase 1
mm10_v2_chr14_-_31417666_31417678	0.0752744	GCAGCAU	ENSMUST00000100730.3|Sh3bp5|ENSMUSG00000021892.8|SH3-domain binding protein 5 (BTK-associated)
mm10_v2_chr5_+_3343893_3343945	0.0732372	GCAGCAU	ENSMUST00000165117.1|Cdk6|ENSMUSG00000040274.5|cyclin-dependent kinase 6
mm10_v2_chr15_-_58076183_58076245	0.0726608	GCAGCAU	ENSMUST00000177504.2|9130401M01Rik|ENSMUSG00000022362.7|RIKEN cDNA 9130401M01 gene 	ENSMUST00000176076.1|9130401M01Rik|ENSMUSG00000022362.7|RIKEN cDNA 9130401M01 gene 	ENSMUST00000177176.1|9130401M01Rik|ENSMUSG00000022362.7|RIKEN cDNA 9130401M01 gene 	ENSMUST00000177276.1|Zhx1|ENSMUSG00000022361.8|zinc fingers and homeoboxes 1 	ENSMUST00000175805.2|Zhx1|ENSMUSG00000022361.8|zinc fingers and homeoboxes 1
mm10_v2_chr4_+_13743424_13743478	0.0717844	GCAGCAU	ENSMUST00000006761.3|Runx1t1|ENSMUSG00000006586.9|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm10_v2_chr12_+_53248677_53248677	0.0715268	GCAGCAU	ENSMUST00000101432.2|Npas3|ENSMUSG00000021010.7|neuronal PAS domain protein 3
mm10_v2_chr18_+_68300351_68300422	0.070874	GCAGCAU	ENSMUST00000009679.4|Rnmt|ENSMUSG00000009535.7|RNA (guanine-7-) methyltransferase 	ENSMUST00000131075.1|Rnmt|ENSMUSG00000009535.7|RNA (guanine-7-) methyltransferase 	ENSMUST00000025427.7|Rnmt|ENSMUSG00000009535.7|RNA (guanine-7-) methyltransferase 	ENSMUST00000139111.1|Rnmt|ENSMUSG00000009535.7|RNA (guanine-7-) methyltransferase
mm10_v2_chr13_-_89742490_89742515	0.0706942	GCAGCAU	ENSMUST00000109546.2|Vcan|ENSMUSG00000021614.10|versican
mm10_v2_chrX_-_51018011_51018032	0.0694753	GCAGCAU	ENSMUST00000053593.7|Rap2c|ENSMUSG00000050029.7|RAP2C, member of RAS oncogene family
mm10_v2_chr5_+_105876532_105876585	0.069458	GCAGCAU	ENSMUST00000150440.1|Zfp326|ENSMUSG00000029290.6|zinc finger protein 326 	ENSMUST00000031227.4|Zfp326|ENSMUSG00000029290.6|zinc finger protein 326
mm10_v2_chr15_-_91049823_91049948	0.0692353	GCAGCAU	ENSMUST00000088614.5|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A 	ENSMUST00000100304.4|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A 	ENSMUST00000067205.8|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A 	ENSMUST00000109288.2|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A 	ENSMUST00000109287.2|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A
mm10_v2_chr9_-_52168111_52168111	0.0692103	GCAGCAU	ENSMUST00000165519.1|Zc3h12c|ENSMUSG00000035164.7|zinc finger CCCH type containing 12C
mm10_v2_chr1_+_160906372_160906460	0.0681449	GCAGCAU	ENSMUST00000161609.1|Rc3h1|ENSMUSG00000040423.4|RING CCCH (C3H) domains 1
mm10_v2_chr2_+_156196642_156196775	0.0677922	GCAGCAU	ENSMUST00000037401.8|Phf20|ENSMUSG00000038116.10|PHD finger protein 20
mm10_v2_chr3_+_22076644_22076681	0.0671784	GCAGCAU	ENSMUST00000063988.8|Tbl1xr1|ENSMUSG00000027630.8|transducin (beta)-like 1X-linked receptor 1
mm10_v2_chr11_-_120824098_120824178	0.0665975	GCAGCAU	ENSMUST00000055655.7|Fasn|ENSMUSG00000025153.8|fatty acid synthase
mm10_v2_chr2_-_114201416_114201469	0.0660092	GCAGCAU	ENSMUST00000050668.3|Zfp770|ENSMUSG00000040321.3|zinc finger protein 770
mm10_v2_chr18_+_10725530_10725564	0.0654769	GCAGCAU	ENSMUST00000052838.4|Mib1|ENSMUSG00000024294.7|mindbomb homolog 1 (Drosophila)
mm10_v2_chr11_-_75348261_75348324	0.0647025	GCAGCAU	ENSMUST00000000767.5|Rpa1|ENSMUSG00000000751.7|replication protein A1 	ENSMUST00000092907.5|Rpa1|ENSMUSG00000000751.7|replication protein A1
mm10_v2_chr15_-_79742518_79742562	0.0644046	GCAGCAU	ENSMUST00000089311.4|Sun2|ENSMUSG00000042524.7|Sad1 and UNC84 domain containing 2 	ENSMUST00000046259.7|Sun2|ENSMUSG00000042524.7|Sad1 and UNC84 domain containing 2
mm10_v2_chr4_+_128993224_128993290	0.0634746	GCAGCAU	ENSMUST00000030583.6|Ak2|ENSMUSG00000028792.8|adenylate kinase 2 	ENSMUST00000102604.4|Ak2|ENSMUSG00000028792.8|adenylate kinase 2
mm10_v2_chr5_-_3803081_3803119	0.0627681	GCAGCAU	ENSMUST00000043551.6|Ankib1|ENSMUSG00000040351.7|ankyrin repeat and IBR domain containing 1
mm10_v2_chr7_+_49246812_49246844	0.0622834	GCAGCAU	ENSMUST00000184945.1|Nav2|ENSMUSG00000052512.9|neuron navigator 2
mm10_v2_chr5_+_123142187_123142229	0.0622415	GCAGCAU	ENSMUST00000174836.1|Setd1b|ENSMUSG00000038384.10|SET domain containing 1B 	ENSMUST00000163030.2|Setd1b|ENSMUSG00000038384.10|SET domain containing 1B
mm10_v2_chr2_+_119897212_119897305	0.0601136	GCAGCAU	ENSMUST00000046717.6|Mga|ENSMUSG00000033943.9|MAX gene associated 	ENSMUST00000110774.1|Mga|ENSMUSG00000033943.9|MAX gene associated 	ENSMUST00000110773.2|Mga|ENSMUSG00000033943.9|MAX gene associated 	ENSMUST00000079934.5|Mga|ENSMUSG00000033943.9|MAX gene associated 	ENSMUST00000156510.1|Mga|ENSMUSG00000033943.9|MAX gene associated
mm10_v2_chr17_+_3114957_3114982	0.0578046	GCAGCAU	ENSMUST00000076734.6|Scaf8|ENSMUSG00000046201.8|SR-related CTD-associated factor 8
mm10_v2_chr12_-_98901478_98901492	0.0574423	GCAGCAU	ENSMUST00000065716.6|Eml5|ENSMUSG00000051166.9|echinoderm microtubule associated protein like 5
mm10_v2_chr4_-_133967893_133967951	0.0572305	GCAGCAU	ENSMUST00000100472.3|Hmgn2|ENSMUSG00000003038.9|high mobility group nucleosomal binding domain 2 	ENSMUST00000136327.1|Hmgn2|ENSMUSG00000003038.9|high mobility group nucleosomal binding domain 2
mm10_v2_chr19_-_14597983_14598016	0.0570663	GCAGCAU	ENSMUST00000052011.7|Tle4|ENSMUSG00000024642.10|transducin-like enhancer of split 4, homolog of Drosophila E(spl)
mm10_v2_chr13_-_98891036_98891063	0.0566698	GCAGCAU	ENSMUST00000109399.2|Tnpo1|ENSMUSG00000009470.10|transportin 1
mm10_v2_chr8_+_79028587_79028654	0.0560235	GCAGCAU	ENSMUST00000119254.1|Zfp827|ENSMUSG00000071064.7|zinc finger protein 827
mm10_v2_chr11_+_78512193_78512237	0.05556	GCAGCAU	ENSMUST00000001127.4|Poldip2|ENSMUSG00000001100.4|polymerase (DNA-directed), delta interacting protein 2
mm10_v2_chr12_+_12262139_12262157	0.0551464	GCAGCAU	ENSMUST00000069066.6|Fam49a|ENSMUSG00000020589.10|family with sequence similarity 49, member A 	ENSMUST00000069005.8|Fam49a|ENSMUSG00000020589.10|family with sequence similarity 49, member A
mm10_v2_chr5_+_138085083_138085147	0.0544453	GCAGCAU	ENSMUST00000019660.4|Zkscan1|ENSMUSG00000029729.6|zinc finger with KRAB and SCAN domains 1 	ENSMUST00000066617.5|Zkscan1|ENSMUSG00000029729.6|zinc finger with KRAB and SCAN domains 1 	ENSMUST00000110963.1|Zkscan1|ENSMUSG00000029729.6|zinc finger with KRAB and SCAN domains 1
mm10_v2_chr7_-_127021205_127021216	0.054257	GCAGCAU	ENSMUST00000159916.1|Prrt2|ENSMUSG00000045114.7|proline-rich transmembrane protein 2
mm10_v2_chr1_-_119837613_119837673	0.0541604	GCAGCAU	ENSMUST00000064091.5|Ptpn4|ENSMUSG00000026384.7|protein tyrosine phosphatase, non-receptor type 4
mm10_v2_chr17_+_86167777_86167795	0.0540314	GCAGCAU	ENSMUST00000097275.2|Prkce|ENSMUSG00000045038.8|protein kinase C, epsilon
mm10_v2_chr7_+_59228743_59228769	0.0537621	GCAGCAU	ENSMUST00000107537.1|Ube3a|ENSMUSG00000025326.8|ubiquitin protein ligase E3A
mm10_v2_chr5_-_32854185_32854256	0.0535812	GCAGCAU	ENSMUST00000130134.2|Prr14l|ENSMUSG00000054280.8|proline rich 14-like 	ENSMUST00000120129.2|Prr14l|ENSMUSG00000054280.8|proline rich 14-like
mm10_v2_chr6_-_51469869_51469894	0.0531158	GCAGCAU	ENSMUST00000114459.1|Hnrnpa2b1|ENSMUSG00000004980.10|heterogeneous nuclear ribonucleoprotein A2/B1 	ENSMUST00000069949.6|Hnrnpa2b1|ENSMUSG00000004980.10|heterogeneous nuclear ribonucleoprotein A2/B1
mm10_v2_chr2_+_129065934_129065994	0.0522308	GCAGCAU	ENSMUST00000035812.7|Ttl|ENSMUSG00000027394.7|tubulin tyrosine ligase
mm10_v2_chr6_+_56714891_56714951	0.0521495	GCAGCAU	ENSMUST00000031805.8|Avl9|ENSMUSG00000029787.8|AVL9 homolog (S. cerevisiase)
mm10_v2_chr14_-_26971232_26971232	0.0519313	GCAGCAU	ENSMUST00000036570.4|Appl1|ENSMUSG00000040760.4|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
mm10_v2_chr15_+_79141324_79141358	0.0514063	GCAGCAU	ENSMUST00000040077.6|Polr2f|ENSMUSG00000033020.6|polymerase (RNA) II (DNA directed) polypeptide F
mm10_v2_chr2_-_103797617_103797662	0.0507295	GCAGCAU	ENSMUST00000028607.6|Caprin1|ENSMUSG00000027184.8|cell cycle associated protein 1
mm10_v2_chr8_-_57653023_57653039	0.0502879	GCAGCAU	ENSMUST00000034021.5|Galnt7|ENSMUSG00000031608.7|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7
mm10_v2_chr16_+_42907563_42907684	0.0502574	GCAGCAU	ENSMUST00000151244.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000114694.2|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr6_-_39206782_39206831	0.0501865	GCAGCAU	ENSMUST00000002305.8|Jhdm1d|ENSMUSG00000042599.8|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
mm10_v2_chr10_+_7681197_7681225	0.0497217	GCAGCAU	ENSMUST00000165952.1|Lats1|ENSMUSG00000040021.6|large tumor suppressor
mm10_v2_chr11_-_88718223_88718294	0.0491558	GCAGCAU	ENSMUST00000107909.1|Msi2|ENSMUSG00000069769.7|musashi RNA-binding protein 2
mm10_v2_chr1_+_66468364_66468435	0.0482619	GCAGCAU	ENSMUST00000061620.9|Unc80|ENSMUSG00000055567.10|unc-80 homolog (C. elegans)
mm10_v2_chr3_+_94954075_94954226	0.0457072	GCAGCAU	ENSMUST00000107260.2|Rfx5|ENSMUSG00000005774.6|regulatory factor X, 5 (influences HLA class II expression) 	ENSMUST00000142311.1|Rfx5|ENSMUSG00000005774.6|regulatory factor X, 5 (influences HLA class II expression) 	ENSMUST00000137088.1|Rfx5|ENSMUSG00000005774.6|regulatory factor X, 5 (influences HLA class II expression) 	ENSMUST00000152869.1|Rfx5|ENSMUSG00000005774.6|regulatory factor X, 5 (influences HLA class II expression) 	ENSMUST00000107254.1|Rfx5|ENSMUSG00000005774.6|regulatory factor X, 5 (influences HLA class II expression) 	ENSMUST00000107253.1|Rfx5|ENSMUSG00000005774.6|regulatory factor X, 5 (influences HLA class II expression)
mm10_v2_chr7_-_105399991_105400054	0.0456217	GCAGCAU	ENSMUST00000118726.1|Fam160a2|ENSMUSG00000044465.12|family with sequence similarity 160, member A2 	ENSMUST00000074686.7|Fam160a2|ENSMUSG00000044465.12|family with sequence similarity 160, member A2 	ENSMUST00000122327.1|Fam160a2|ENSMUSG00000044465.12|family with sequence similarity 160, member A2 	ENSMUST00000179474.1|Fam160a2|ENSMUSG00000044465.12|family with sequence similarity 160, member A2 	ENSMUST00000048079.6|Fam160a2|ENSMUSG00000044465.12|family with sequence similarity 160, member A2
mm10_v2_chr2_-_42653598_42653598	0.0454909	GCAGCAU	ENSMUST00000052550.6|Lrp1b|ENSMUSG00000049252.11|low density lipoprotein-related protein 1B (deleted in tumors)
mm10_v2_chr2_+_130012336_130012350	0.0452612	GCAGCAU	ENSMUST00000110299.2|Tgm3|ENSMUSG00000027401.9|transglutaminase 3, E polypeptide
mm10_v2_chr3_+_9250602_9250602	0.0450935	GCAGCAU	ENSMUST00000155203.1|Zbtb10|ENSMUSG00000069114.8|zinc finger and BTB domain containing 10
mm10_v2_chr13_-_96132568_96132628	0.045025	GCAGCAU	ENSMUST00000161263.1|Sv2c|ENSMUSG00000051111.9|synaptic vesicle glycoprotein 2c
mm10_v2_chr16_-_92466081_92466187	0.0447406	GCAGCAU	ENSMUST00000060005.8|Rcan1|ENSMUSG00000022951.9|regulator of calcineurin 1
mm10_v2_chr10_-_127263346_127263368	0.0444476	GCAGCAU	ENSMUST00000099172.3|Kif5a|ENSMUSG00000074657.4|kinesin family member 5A
mm10_v2_chr11_-_76846968_76847045	0.0440388	GCAGCAU	ENSMUST00000021201.5|Cpd|ENSMUSG00000020841.5|carboxypeptidase D
mm10_v2_chr7_-_73541738_73541758	0.0432575	GCAGCAU	ENSMUST00000169922.2|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr14_+_48446340_48446429	0.0429585	GCAGCAU	ENSMUST00000111735.2|Tmem260|ENSMUSG00000036339.11|transmembrane protein 260
mm10_v2_chr16_-_16146771_16146851	0.0425871	GCAGCAU	ENSMUST00000040248.7|Spidr|ENSMUSG00000041974.9|scaffolding protein involved i DNA repair
mm10_v2_chr9_+_64385675_64385698	0.0423373	GCAGCAU	ENSMUST00000068967.4|Megf11|ENSMUSG00000036466.11|multiple EGF-like-domains 11
mm10_v2_chr19_+_5490475_5490487	0.0410964	GCAGCAU	ENSMUST00000116560.2|Cfl1|ENSMUSG00000056201.6|cofilin 1, non-muscle
mm10_v2_chr11_+_74770822_74770876	0.041016	GCAGCAU	ENSMUST00000141755.1|Mettl16|ENSMUSG00000010554.8|methyltransferase like 16 	ENSMUST00000010698.6|Mettl16|ENSMUSG00000010554.8|methyltransferase like 16
mm10_v2_chr12_-_118301429_118301458	0.0408638	GCAGCAU	ENSMUST00000026367.9|Sp4|ENSMUSG00000025323.9|trans-acting transcription factor 4
mm10_v2_chr2_+_112379204_112379253	0.0405035	GCAGCAU	ENSMUST00000028552.3|Katnbl1|ENSMUSG00000027132.3|katanin p80 subunit B like 1
mm10_v2_chr11_-_97187872_97187926	0.0403871	GCAGCAU	ENSMUST00000001479.4|Kpnb1|ENSMUSG00000001440.5|karyopherin (importin) beta 1
mm10_v2_chr10_-_22731336_22731447	0.0401467	GCAGCAU	ENSMUST00000127698.1|Tbpl1|ENSMUSG00000071359.7|TATA box binding protein-like 1
mm10_v2_chrX_+_112604274_112604274	0.0394008	GCAGCAU	ENSMUST00000071814.6|Zfp711|ENSMUSG00000025529.8|zinc finger protein 711
mm10_v2_chr14_+_34310727_34310778	0.0389307	GCAGCAU	ENSMUST00000022322.9|Glud1|ENSMUSG00000021794.9|glutamate dehydrogenase 1
mm10_v2_chr19_-_31765027_31765079	0.0383241	GCAGCAU	ENSMUST00000065067.6|Prkg1|ENSMUSG00000052920.8|protein kinase, cGMP-dependent, type I
mm10_v2_chr13_-_103764502_103764505	0.0382078	GCAGCAU	ENSMUST00000074616.5|Srek1|ENSMUSG00000032621.7|splicing regulatory glutamine/lysine-rich protein 1
mm10_v2_chr15_+_81744848_81744848	0.0370339	GCAGCAU	ENSMUST00000109554.1|Zc3h7b|ENSMUSG00000022390.10|zinc finger CCCH type containing 7B
mm10_v2_chr16_-_76373827_76373852	0.0363834	GCAGCAU	ENSMUST00000121927.1|Nrip1|ENSMUSG00000048490.7|nuclear receptor interacting protein 1
mm10_v2_chr2_-_33431324_33431324	0.0359807	GCAGCAU	ENSMUST00000113158.1|Zbtb34|ENSMUSG00000068966.4|zinc finger and BTB domain containing 34
mm10_v2_chr4_-_45084538_45084604	0.035771	GCAGCAU	ENSMUST00000052236.6|Fbxo10|ENSMUSG00000048232.6|F-box protein 10
mm10_v2_chr16_+_44173239_44173270	0.035098	GCAGCAU	ENSMUST00000119746.1|Gm608|ENSMUSG00000068284.8|predicted gene 608
mm10_v2_chr7_+_27862557_27862557	0.0350272	GCAGCAU	ENSMUST00000053722.8|Zfp607|ENSMUSG00000020420.7|zinc finger proten 607
mm10_v2_chr17_+_27655572_27655622	0.0346745	GCAGCAU	ENSMUST00000045896.3|Pacsin1|ENSMUSG00000040276.8|protein kinase C and casein kinase substrate in neurons 1
mm10_v2_chr16_+_35983307_35983395	0.0346183	GCAGCAU	ENSMUST00000004054.6|Kpna1|ENSMUSG00000022905.6|karyopherin (importin) alpha 1
mm10_v2_chr11_-_121388186_121388267	0.0345158	GCAGCAU	ENSMUST00000106107.2|Rab40b|ENSMUSG00000025170.7|Rab40b, member RAS oncogene family
mm10_v2_chr11_+_70017085_70017146	0.0344356	GCAGCAU	ENSMUST00000108589.2|Dlg4|ENSMUSG00000020886.10|discs, large homolog 4 (Drosophila)
mm10_v2_chr12_+_111166349_111166397	0.0340667	GCAGCAU	ENSMUST00000117269.1|Traf3|ENSMUSG00000021277.10|TNF receptor-associated factor 3
mm10_v2_chr1_-_135585314_135585364	0.0332626	GCAGCAU	ENSMUST00000040599.8|Nav1|ENSMUSG00000009418.9|neuron navigator 1 	ENSMUST00000067414.6|Nav1|ENSMUSG00000009418.9|neuron navigator 1
mm10_v2_chr11_+_79993062_79993122	0.0328423	GCAGCAU	ENSMUST00000017692.8|Suz12|ENSMUSG00000017548.9|suppressor of zeste 12 homolog (Drosophila) 	ENSMUST00000163272.1|Suz12|ENSMUSG00000017548.9|suppressor of zeste 12 homolog (Drosophila)
mm10_v2_chr18_+_53245618_53245662	0.0319661	GCAGCAU	ENSMUST00000165032.1|Snx24|ENSMUSG00000024535.9|sorting nexing 24
mm10_v2_chr3_+_94974728_94974753	0.0317465	GCAGCAU	ENSMUST00000072287.5|Pi4kb|ENSMUSG00000038861.8|phosphatidylinositol 4-kinase, catalytic, beta polypeptide
mm10_v2_chr10_-_45470201_45470260	0.0316795	GCAGCAU	ENSMUST00000079390.6|Lin28b|ENSMUSG00000063804.7|lin-28 homolog B (C. elegans)
mm10_v2_chr1_-_195092242_195092253	0.031571	GCAGCAU	ENSMUST00000162650.1|Cd46|ENSMUSG00000016493.7|CD46 antigen, complement regulatory protein 	ENSMUST00000160817.1|Cd46|ENSMUSG00000016493.7|CD46 antigen, complement regulatory protein 	ENSMUST00000162614.1|Cd46|ENSMUSG00000016493.7|CD46 antigen, complement regulatory protein 	ENSMUST00000016637.6|Cd46|ENSMUSG00000016493.7|CD46 antigen, complement regulatory protein
mm10_v2_chrX_-_136868537_136868755	0.0311149	GCAGCAU	ENSMUST00000058814.6|Rab9b|ENSMUSG00000043463.6|RAB9B, member RAS oncogene family
mm10_v2_chr2_+_49619277_49619343	0.0308059	GCAGCAU	ENSMUST00000028102.7|Kif5c|ENSMUSG00000026764.9|kinesin family member 5C
mm10_v2_chrX_-_41911877_41911912	0.0300885	GCAGCAU	ENSMUST00000047037.8|Thoc2|ENSMUSG00000037475.9|THO complex 2
mm10_v2_chr3_-_119783262_119783388	0.0295225	GCAGCAU	ENSMUST00000029780.7|Ptbp2|ENSMUSG00000028134.7|polypyrimidine tract binding protein 2
mm10_v2_chr4_-_151044564_151044691	0.0294944	GCAGCAU	ENSMUST00000103204.4|Per3|ENSMUSG00000028957.6|period circadian clock 3
mm10_v2_chr2_-_84650714_84650749	0.0294695	GCAGCAU	ENSMUST00000111697.2|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111670.2|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111696.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111678.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111690.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111695.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111677.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111698.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000099941.2|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111676.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111694.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111675.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111689.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111687.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111692.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111685.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111686.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111688.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111693.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111684.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1
mm10_v2_chr2_+_153741274_153741294	0.028974	GCAGCAU	ENSMUST00000028981.8|Mapre1|ENSMUSG00000027479.8|microtubule-associated protein, RP/EB family, member 1
mm10_v2_chr12_+_49382791_49382883	0.0288799	GCAGCAU	ENSMUST00000179669.1|Foxg1|ENSMUSG00000020950.9|forkhead box G1
mm10_v2_chr19_+_40831248_40831292	0.0284395	GCAGCAU	ENSMUST00000025983.6|Ccnj|ENSMUSG00000025010.7|cyclin J 	ENSMUST00000120057.1|Ccnj|ENSMUSG00000025010.7|cyclin J
mm10_v2_chr14_-_33447142_33447179	0.0283877	GCAGCAU	ENSMUST00000111944.3|Mapk8|ENSMUSG00000021936.7|mitogen-activated protein kinase 8 	ENSMUST00000022504.5|Mapk8|ENSMUSG00000021936.7|mitogen-activated protein kinase 8 	ENSMUST00000111945.2|Mapk8|ENSMUSG00000021936.7|mitogen-activated protein kinase 8
mm10_v2_chr2_+_69897220_69897247	0.0274192	GCAGCAU	ENSMUST00000055758.9|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3 	ENSMUST00000112251.2|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chr9_+_35421541_35421616	0.0272393	GCAGCAU	ENSMUST00000119129.2|Cdon|ENSMUSG00000038119.8|cell adhesion molecule-related/down-regulated by oncogenes
mm10_v2_chr17_-_75551838_75551946	0.0271849	GCAGCAU	ENSMUST00000112507.3|Fam98a|ENSMUSG00000002017.9|family with sequence similarity 98, member A
mm10_v2_chr1_+_172499948_172500047	0.0268916	GCAGCAU	ENSMUST00000111230.1|Tagln2|ENSMUSG00000026547.9|transgelin 2
mm10_v2_chr3_-_75556759_75556871	0.0264543	GCAGCAU	ENSMUST00000162138.1|Pdcd10|ENSMUSG00000027835.5|programmed cell death 10 	ENSMUST00000029424.5|Pdcd10|ENSMUSG00000027835.5|programmed cell death 10 	ENSMUST00000161137.1|Pdcd10|ENSMUSG00000027835.5|programmed cell death 10
mm10_v2_chr4_+_100095791_100095867	0.0254785	GCAGCAU	ENSMUST00000039630.5|Ror1|ENSMUSG00000035305.5|receptor tyrosine kinase-like orphan receptor 1
mm10_v2_chr3_-_9004686_9004750	0.0246779	GCAGCAU	ENSMUST00000120143.1|Tpd52|ENSMUSG00000027506.9|tumor protein D52
mm10_v2_chr11_-_104550460_104550560	0.0246774	GCAGCAU	ENSMUST00000106961.1|Cdc27|ENSMUSG00000020687.7|cell division cycle 27 	ENSMUST00000093923.2|Cdc27|ENSMUSG00000020687.7|cell division cycle 27
mm10_v2_chr1_-_134079114_134079120	0.0244738	GCAGCAU	ENSMUST00000020692.6|Btg2|ENSMUSG00000020423.6|B cell translocation gene 2, anti-proliferative
mm10_v2_chr1_-_74951651_74951678	0.0231145	GCAGCAU	ENSMUST00000164097.1|Ihh|ENSMUSG00000006538.9|Indian hedgehog
mm10_v2_chr1_+_105990384_105990498	0.0229518	GCAGCAU	ENSMUST00000119166.1|Zcchc2|ENSMUSG00000038866.9|zinc finger, CCHC domain containing 2
mm10_v2_chr5_+_16553488_16553550	0.0226479	GCAGCAU	ENSMUST00000030683.3|Hgf|ENSMUSG00000028864.3|hepatocyte growth factor
mm10_v2_chr4_+_148591482_148591546	0.0226202	GCAGCAU	ENSMUST00000006611.8|Srm|ENSMUSG00000006442.10|spermidine synthase
mm10_v2_chr15_+_80711292_80711340	0.0222136	GCAGCAU	ENSMUST00000067689.7|Tnrc6b|ENSMUSG00000047888.9|trinucleotide repeat containing 6b
mm10_v2_chr4_-_3938354_3938401	0.0218945	GCAGCAU	ENSMUST00000003369.3|Plag1|ENSMUSG00000003282.3|pleiomorphic adenoma gene 1
mm10_v2_chr2_+_3118335_3118392	0.021754	GCAGCAU	ENSMUST00000115099.2|Fam171a1|ENSMUSG00000050530.8|family with sequence similarity 171, member A1
mm10_v2_chr7_-_80402743_80402762	0.0216542	GCAGCAU	ENSMUST00000122232.1|Furin|ENSMUSG00000030530.9|furin (paired basic amino acid cleaving enzyme)
mm10_v2_chr10_+_69533761_69533776	0.0215086	GCAGCAU	ENSMUST00000182884.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr4_+_85205417_85205535	0.0210226	GCAGCAU	ENSMUST00000030212.8|Sh3gl2|ENSMUSG00000028488.9|SH3-domain GRB2-like 2 	ENSMUST00000107189.1|Sh3gl2|ENSMUSG00000028488.9|SH3-domain GRB2-like 2 	ENSMUST00000107184.1|Sh3gl2|ENSMUSG00000028488.9|SH3-domain GRB2-like 2
mm10_v2_chr6_-_39725448_39725478	0.020343	GCAGCAU	ENSMUST00000002487.8|Braf|ENSMUSG00000002413.9|Braf transforming gene
mm10_v2_chr4_-_58912678_58912776	0.0203295	GCAGCAU	ENSMUST00000144512.1|AI314180|ENSMUSG00000050812.12|expressed sequence AI314180 	ENSMUST00000102889.3|AI314180|ENSMUSG00000050812.12|expressed sequence AI314180 	ENSMUST00000055822.8|AI314180|ENSMUSG00000050812.12|expressed sequence AI314180
mm10_v2_chr3_+_146852359_146852438	0.0197682	GCAGCAU	ENSMUST00000038090.5|Ttll7|ENSMUSG00000036745.9|tubulin tyrosine ligase-like family, member 7 	ENSMUST00000170055.1|Ttll7|ENSMUSG00000036745.9|tubulin tyrosine ligase-like family, member 7
mm10_v2_chr15_-_94589870_94589889	0.0190436	GCAGCAU	ENSMUST00000023087.6|Twf1|ENSMUSG00000022451.6|twinfilin, actin-binding protein, homolog 1 (Drosophila) 	ENSMUST00000152590.1|Twf1|ENSMUSG00000022451.6|twinfilin, actin-binding protein, homolog 1 (Drosophila)
mm10_v2_chr10_+_67979569_67979575	0.0185204	GCAGCAU	ENSMUST00000118160.1|Rtkn2|ENSMUSG00000037846.12|rhotekin 2
mm10_v2_chr5_+_72914264_72914304	0.0183123	GCAGCAU	ENSMUST00000144843.1|Slain2|ENSMUSG00000036087.12|SLAIN motif family, member 2
mm10_v2_chr4_+_108619925_108619994	0.0182952	GCAGCAU	ENSMUST00000030320.6|Cc2d1b|ENSMUSG00000028582.8|coiled-coil and C2 domain containing 1B
mm10_v2_chr18_+_36281069_36281151	0.0182868	GCAGCAU	ENSMUST00000051301.3|Pura|ENSMUSG00000043991.3|purine rich element binding protein A
mm10_v2_chr5_-_123684289_123684379	0.0182382	GCAGCAU	ENSMUST00000111564.1|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1 	ENSMUST00000063905.5|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1
mm10_v2_chr2_-_37647199_37647285	0.0178138	GCAGCAU	ENSMUST00000028279.3|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr10_+_128092771_128092819	0.0177344	GCAGCAU	ENSMUST00000170054.2|Baz2a|ENSMUSG00000040054.9|bromodomain adjacent to zinc finger domain, 2A 	ENSMUST00000045621.8|Baz2a|ENSMUSG00000040054.9|bromodomain adjacent to zinc finger domain, 2A
mm10_v2_chr1_+_42697146_42697146	0.017719	GCAGCAU	ENSMUST00000054883.2|Pou3f3|ENSMUSG00000045515.2|POU domain, class 3, transcription factor 3
mm10_v2_chr7_+_92741603_92741715	0.0174672	GCAGCAU	ENSMUST00000032879.7|Rab30|ENSMUSG00000030643.7|RAB30, member RAS oncogene family
mm10_v2_chr9_-_70141484_70141578	0.0174028	GCAGCAU	ENSMUST00000034749.8|Fam81a|ENSMUSG00000032224.8|family with sequence similarity 81, member A
mm10_v2_chr11_+_17159263_17159357	0.0171878	GCAGCAU	ENSMUST00000102880.4|Ppp3r1|ENSMUSG00000033953.10|protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)
mm10_v2_chr18_+_53862087_53862143	0.017061	GCAGCAU	ENSMUST00000069597.6|Csnk1g3|ENSMUSG00000073563.2|casein kinase 1, gamma 3
mm10_v2_chr2_-_6884975_6884996	0.0170185	GCAGCAU	ENSMUST00000114924.3|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000170438.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000114934.4|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr9_-_110462436_110462480	0.0167359	GCAGCAU	ENSMUST00000111933.1|Klhl18|ENSMUSG00000054792.9|kelch-like 18
mm10_v2_chr11_+_107547925_107547968	0.0163929	GCAGCAU	ENSMUST00000100305.1|Helz|ENSMUSG00000020721.10|helicase with zinc finger domain 	ENSMUST00000075012.1|Helz|ENSMUSG00000020721.10|helicase with zinc finger domain 	ENSMUST00000106746.1|Helz|ENSMUSG00000020721.10|helicase with zinc finger domain
mm10_v2_chr4_+_124802543_124802678	0.0163288	GCAGCAU	ENSMUST00000138807.1|Mtf1|ENSMUSG00000028890.7|metal response element binding transcription factor 1 	ENSMUST00000030723.2|Mtf1|ENSMUSG00000028890.7|metal response element binding transcription factor 1 	ENSMUST00000175875.1|Mtf1|ENSMUSG00000028890.7|metal response element binding transcription factor 1
mm10_v2_chr4_+_97777606_97777632	0.0162532	GCAGCAU	ENSMUST00000075448.6|Nfia|ENSMUSG00000028565.12|nuclear factor I/A 	ENSMUST00000092532.6|Nfia|ENSMUSG00000028565.12|nuclear factor I/A
mm10_v2_chr4_-_141723401_141723436	0.0161754	GCAGCAU	ENSMUST00000102484.4|Ddi2|ENSMUSG00000078515.3|DNA-damage inducible protein 2 	ENSMUST00000177592.1|Rsc1a1|ENSMUSG00000040715.11|regulatory solute carrier protein, family 1, member 1
mm10_v2_chr12_-_102878406_102878449	0.0161097	GCAGCAU	ENSMUST00000045652.6|Btbd7|ENSMUSG00000041702.6|BTB (POZ) domain containing 7
mm10_v2_chr10_+_63243785_63243846	0.0157919	GCAGCAU	ENSMUST00000020258.8|Herc4|ENSMUSG00000020064.8|hect domain and RLD 4
mm10_v2_chr1_+_55131231_55131249	0.0153583	GCAGCAU	ENSMUST00000162364.1|Mob4|ENSMUSG00000025979.7|MOB family member 4, phocein 	ENSMUST00000159311.1|Mob4|ENSMUSG00000025979.7|MOB family member 4, phocein
mm10_v2_chr11_+_97362396_97362551	0.0150427	GCAGCAU	ENSMUST00000045540.3|Socs7|ENSMUSG00000038485.5|suppressor of cytokine signaling 7
mm10_v2_chr16_+_58408443_58408523	0.0150297	GCAGCAU	ENSMUST00000046663.7|Dcbld2|ENSMUSG00000035107.7|discoidin, CUB and LCCL domain containing 2
mm10_v2_chr8_+_93810832_93810843	0.0149897	GCAGCAU	ENSMUST00000034198.8|Gnao1|ENSMUSG00000031748.9|guanine nucleotide binding protein, alpha O 	ENSMUST00000125716.1|Gnao1|ENSMUSG00000031748.9|guanine nucleotide binding protein, alpha O
mm10_v2_chr19_-_19001099_19001119	0.0146655	GCAGCAU	ENSMUST00000040153.8|Rorb|ENSMUSG00000036192.9|RAR-related orphan receptor beta 	ENSMUST00000112828.1|Rorb|ENSMUSG00000036192.9|RAR-related orphan receptor beta
mm10_v2_chrX_-_73966329_73966376	0.0144545	GCAGCAU	ENSMUST00000114372.2|Hcfc1|ENSMUSG00000031386.8|host cell factor C1 	ENSMUST00000033761.6|Hcfc1|ENSMUSG00000031386.8|host cell factor C1
mm10_v2_chr13_-_101768154_101768217	0.0137778	GCAGCAU	ENSMUST00000055518.6|Pik3r1|ENSMUSG00000041417.9|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm10_v2_chr5_+_34761734_34761780	0.013362	GCAGCAU	ENSMUST00000080036.2|Htt|ENSMUSG00000029104.9|huntingtin
mm10_v2_chr1_+_64690443_64690467	0.013352	GCAGCAU	ENSMUST00000114077.1|Ccnyl1|ENSMUSG00000070871.4|cyclin Y-like 1
mm10_v2_chr1_-_25228814_25228834	0.0123061	GCAGCAU	ENSMUST00000126626.1|Bai3|ENSMUSG00000033569.11|brain-specific angiogenesis inhibitor 3
mm10_v2_chr17_-_24479034_24479083	0.0122035	GCAGCAU	ENSMUST00000179163.1|Mlst8|ENSMUSG00000024142.8|MTOR associated protein, LST8 homolog (S. cerevisiae) 	ENSMUST00000070888.6|Mlst8|ENSMUSG00000024142.8|MTOR associated protein, LST8 homolog (S. cerevisiae)
mm10_v2_chr2_-_160872552_160872622	0.0119443	GCAGCAU	ENSMUST00000103111.2|Zhx3|ENSMUSG00000035877.11|zinc fingers and homeoboxes 3
mm10_v2_chr12_-_104751900_104751952	0.0119101	GCAGCAU	ENSMUST00000041987.6|Dicer1|ENSMUSG00000041415.9|dicer 1, ribonuclease type III
mm10_v2_chr11_+_79591120_79591224	0.0118442	GCAGCAU	ENSMUST00000017783.6|Rab11fip4|ENSMUSG00000017639.7|RAB11 family interacting protein 4 (class II)
mm10_v2_chr1_+_16105774_16105870	0.0117038	GCAGCAU	ENSMUST00000027053.7|Rdh10|ENSMUSG00000025921.7|retinol dehydrogenase 10 (all-trans)
mm10_v2_chr16_+_32332238_32332266	0.0116006	GCAGCAU	ENSMUST00000115151.3|Ubxn7|ENSMUSG00000053774.8|UBX domain protein 7
mm10_v2_chr14_+_17660956_17660963	0.0112663	GCAGCAU	ENSMUST00000022303.7|Thrb|ENSMUSG00000021779.10|thyroid hormone receptor beta 	ENSMUST00000091471.4|Thrb|ENSMUSG00000021779.10|thyroid hormone receptor beta
mm10_v2_chr6_-_127769427_127769472	0.0112132	GCAGCAU	ENSMUST00000032500.8|Prmt8|ENSMUSG00000030350.8|protein arginine N-methyltransferase 8
mm10_v2_chrX_-_7188713_7188743	0.0111104	GCAGCAU	ENSMUST00000004428.7|Clcn5|ENSMUSG00000004317.8|chloride channel 5
mm10_v2_chr16_-_64786321_64786321	0.0107371	GCAGCAU	ENSMUST00000052588.4|Zfp654|ENSMUSG00000047141.4|zinc finger protein 654
mm10_v2_chrX_+_99975570_99975781	0.0104298	GCAGCAU	ENSMUST00000113779.1|Eda|ENSMUSG00000059327.3|ectodysplasin-A 	ENSMUST00000113776.1|Eda|ENSMUSG00000059327.3|ectodysplasin-A 	ENSMUST00000113775.1|Eda|ENSMUSG00000059327.3|ectodysplasin-A 	ENSMUST00000113780.1|Eda|ENSMUSG00000059327.3|ectodysplasin-A 	ENSMUST00000113778.1|Eda|ENSMUSG00000059327.3|ectodysplasin-A 	ENSMUST00000113781.1|Eda|ENSMUSG00000059327.3|ectodysplasin-A 	ENSMUST00000113783.1|Eda|ENSMUSG00000059327.3|ectodysplasin-A 	ENSMUST00000071453.2|Eda|ENSMUSG00000059327.3|ectodysplasin-A 	ENSMUST00000113777.1|Eda|ENSMUSG00000059327.3|ectodysplasin-A
mm10_v2_chr15_+_89253035_89253035	0.0104119	GCAGCAU	ENSMUST00000088788.3|Ppp6r2|ENSMUSG00000036561.7|protein phosphatase 6, regulatory subunit 2
mm10_v2_chr14_-_61439831_61439947	0.0102999	GCAGCAU	ENSMUST00000022496.7|Kpna3|ENSMUSG00000021929.8|karyopherin (importin) alpha 3
mm10_v2_chr9_-_99568849_99568911	0.00953346	GCAGCAU	ENSMUST00000035043.5|Armc8|ENSMUSG00000032468.5|armadillo repeat containing 8
mm10_v2_chr11_+_80477015_80477085	0.00922568	GCAGCAU	ENSMUST00000053413.10|Cdk5r1|ENSMUSG00000048895.12|cyclin-dependent kinase 5, regulatory subunit 1 (p35) 	ENSMUST00000147694.1|Cdk5r1|ENSMUSG00000048895.12|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
mm10_v2_chr12_+_4769278_4769338	0.00920266	GCAGCAU	ENSMUST00000020967.4|Pfn4|ENSMUSG00000020639.7|profilin family, member 4
mm10_v2_chr8_-_104443001_104443047	0.00913298	GCAGCAU	ENSMUST00000041769.6|Dync1li2|ENSMUSG00000035770.7|dynein, cytoplasmic 1 light intermediate chain 2
mm10_v2_chr3_+_88142328_88142483	0.00901367	GCAGCAU	ENSMUST00000001455.6|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D 	ENSMUST00000119251.1|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D
mm10_v2_chr4_+_59626189_59626253	0.0083645	GCAGCAU	ENSMUST00000070150.4|E130308A19Rik|ENSMUSG00000045071.7|RIKEN cDNA E130308A19 gene 	ENSMUST00000052420.6|E130308A19Rik|ENSMUSG00000045071.7|RIKEN cDNA E130308A19 gene
mm10_v2_chr13_+_118714678_118714701	0.00806328	GCAGCAU	ENSMUST00000022246.8|Fgf10|ENSMUSG00000021732.8|fibroblast growth factor 10
mm10_v2_chr11_-_20112876_20112925	0.00725488	GCAGCAU	ENSMUST00000000137.7|Actr2|ENSMUSG00000020152.7|ARP2 actin-related protein 2
mm10_v2_chr11_+_72689997_72690015	0.00725099	GCAGCAU	ENSMUST00000155998.1|Ankfy1|ENSMUSG00000020790.8|ankyrin repeat and FYVE domain containing 1
mm10_v2_chr17_+_6106880_6106907	0.00675759	GCAGCAU	ENSMUST00000149756.1|Tulp4|ENSMUSG00000034377.4|tubby like protein 4
mm10_v2_chr1_-_63114516_63114667	0.00667754	GCAGCAU	ENSMUST00000097718.2|Ino80d|ENSMUSG00000040865.9|INO80 complex subunit D
mm10_v2_chr13_-_45964964_45965001	0.00558404	GCAGCAU	ENSMUST00000180110.1|Atxn1|ENSMUSG00000046876.9|ataxin 1 	ENSMUST00000091628.3|Atxn1|ENSMUSG00000046876.9|ataxin 1 	ENSMUST00000167708.2|Atxn1|ENSMUSG00000046876.9|ataxin 1
mm10_v2_chr3_+_60501252_60501275	0.00530068	GCAGCAU	ENSMUST00000099087.2|Mbnl1|ENSMUSG00000027763.8|muscleblind-like 1 (Drosophila)
mm10_v2_chr19_+_28990476_28990497	0.005295	GCAGCAU	ENSMUST00000050148.3|Cdc37l1|ENSMUSG00000024780.6|cell division cycle 37-like 1
mm10_v2_chr7_+_82335732_82335732	0.00527219	GCAGCAU	ENSMUST00000173287.1|Adamtsl3|ENSMUSG00000070469.5|ADAMTS-like 3
mm10_v2_chr12_-_45074112_45074306	0.00519051	GCAGCAU	ENSMUST00000120531.1|Stxbp6|ENSMUSG00000046314.9|syntaxin binding protein 6 (amisyn) 	ENSMUST00000143376.1|Stxbp6|ENSMUSG00000046314.9|syntaxin binding protein 6 (amisyn)
mm10_v2_chrX_-_36989656_36989674	0.00510179	GCAGCAU	ENSMUST00000060474.7|Sept6|ENSMUSG00000050379.9|septin 6 	ENSMUST00000053456.4|Sept6|ENSMUSG00000050379.9|septin 6 	ENSMUST00000115239.3|Sept6|ENSMUSG00000050379.9|septin 6
mm10_v2_chr13_-_51567084_51567084	0.00499135	GCAGCAU	ENSMUST00000021898.5|Shc3|ENSMUSG00000021448.6|src homology 2 domain-containing transforming protein C3
mm10_v2_chr6_-_99266494_99266540	0.00489983	GCAGCAU	ENSMUST00000113326.2|Foxp1|ENSMUSG00000030067.11|forkhead box P1
mm10_v2_chr7_+_45434833_45434871	0.00459572	GCAGCAU	ENSMUST00000003964.8|Gys1|ENSMUSG00000003865.8|glycogen synthase 1, muscle
mm10_v2_chrX_+_75514299_75514316	0.00430947	GCAGCAU	ENSMUST00000114070.3|Vbp1|ENSMUSG00000031197.5|von Hippel-Lindau binding protein 1 	ENSMUST00000033540.5|Vbp1|ENSMUSG00000031197.5|von Hippel-Lindau binding protein 1
mm10_v2_chr11_+_75588064_75588151	0.00428879	GCAGCAU	ENSMUST00000143219.1|Pitpna|ENSMUSG00000017781.11|phosphatidylinositol transfer protein, alpha 	ENSMUST00000179521.1|Pitpna|ENSMUSG00000017781.11|phosphatidylinositol transfer protein, alpha 	ENSMUST00000179445.1|Pitpna|ENSMUSG00000017781.11|phosphatidylinositol transfer protein, alpha
mm10_v2_chr7_+_114415272_114415297	0.00420687	GCAGCAU	ENSMUST00000032909.8|Pde3b|ENSMUSG00000030671.8|phosphodiesterase 3B, cGMP-inhibited
mm10_v2_chr6_+_61180313_61180400	0.00415302	GCAGCAU	ENSMUST00000126214.1|Ccser1|ENSMUSG00000039578.10|coiled-coil serine rich 1
mm10_v2_chr13_+_34875488_34875515	0.00329445	GCAGCAU	ENSMUST00000077853.3|Prpf4b|ENSMUSG00000021413.8|PRP4 pre-mRNA processing factor 4 homolog B (yeast)
mm10_v2_chr2_-_161109017_161109027	0.00317553	GCAGCAU	ENSMUST00000039782.7|Chd6|ENSMUSG00000057133.8|chromodomain helicase DNA binding protein 6 	ENSMUST00000134178.1|Chd6|ENSMUSG00000057133.8|chromodomain helicase DNA binding protein 6
mm10_v2_chr10_+_80622677_80622780	0.00259489	GCAGCAU	ENSMUST00000079773.6|Csnk1g2|ENSMUSG00000003345.9|casein kinase 1, gamma 2
mm10_v2_chr14_+_14012491_14012693	0.00253016	GCAGCAU	ENSMUST00000022257.2|Atxn7|ENSMUSG00000021738.4|ataxin 7
mm10_v2_chr16_-_35363842_35363918	0.00247628	GCAGCAU	ENSMUST00000043521.4|Sec22a|ENSMUSG00000034473.7|SEC22 vesicle trafficking protein homolog A (S. cerevisiae)
mm10_v2_chr2_+_49451486_49451559	0.00234107	GCAGCAU	ENSMUST00000092123.4|Epc2|ENSMUSG00000069495.6|enhancer of polycomb homolog 2 (Drosophila)
mm10_v2_chr1_-_155742120_155742136	0.00220321	GCAGCAU	ENSMUST00000027740.7|Lhx4|ENSMUSG00000026468.8|LIM homeobox protein 4
mm10_v2_chr3_+_152210458_152210534	0.00209075	GCAGCAU	ENSMUST00000166984.1|Fubp1|ENSMUSG00000028034.9|far upstream element (FUSE) binding protein 1 	ENSMUST00000106121.1|Fubp1|ENSMUSG00000028034.9|far upstream element (FUSE) binding protein 1
mm10_v2_chr9_-_57467985_57468074	0.00202362	GCAGCAU	ENSMUST00000046587.6|Scamp5|ENSMUSG00000040722.6|secretory carrier membrane protein 5
mm10_v2_chr2_+_153291404_153291459	0.00198154	GCAGCAU	ENSMUST00000028977.6|Kif3b|ENSMUSG00000027475.9|kinesin family member 3B
mm10_v2_chr3_+_95434386_95434428	0.00147292	GCAGCAU	ENSMUST00000102749.4|Arnt|ENSMUSG00000015522.12|aryl hydrocarbon receptor nuclear translocator 	ENSMUST00000090804.5|Arnt|ENSMUSG00000015522.12|aryl hydrocarbon receptor nuclear translocator 	ENSMUST00000107161.1|Arnt|ENSMUSG00000015522.12|aryl hydrocarbon receptor nuclear translocator 	ENSMUST00000107160.1|Arnt|ENSMUSG00000015522.12|aryl hydrocarbon receptor nuclear translocator 	ENSMUST00000015666.10|Arnt|ENSMUSG00000015522.12|aryl hydrocarbon receptor nuclear translocator
mm10_v2_chr7_-_65371210_65371287	0.000576374	GCAGCAU	ENSMUST00000102592.3|Tjp1|ENSMUSG00000030516.8|tight junction protein 1
mm10_v2_chr9_-_51008936_51009080	0.000327519	GCAGCAU	ENSMUST00000176824.1|Sik2|ENSMUSG00000037112.10|salt inducible kinase 2 	ENSMUST00000176663.1|Sik2|ENSMUSG00000037112.10|salt inducible kinase 2 	ENSMUST00000041375.10|Sik2|ENSMUSG00000037112.10|salt inducible kinase 2
mm10_v2_chr11_-_6475992_6476102	0.0003232	GCAGCAU	ENSMUST00000179343.1|Purb|ENSMUSG00000094483.1|purine rich element binding protein B
mm10_v2_chr9_+_107935876_107935938	0.000167465	GCAGCAU	ENSMUST00000035700.8|Camkv|ENSMUSG00000032936.8|CaM kinase-like vesicle-associated
mm10_v2_chr11_+_73018986_73019047	0.000124031	GCAGCAU	ENSMUST00000092937.6|Camkk1|ENSMUSG00000020785.11|calcium/calmodulin-dependent protein kinase kinase 1, alpha
