mm10_v2_chr10_+_4611971_4612021	0.724955	GCUACAU	ENSMUST00000105590.1|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha) 	ENSMUST00000067086.7|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha)
mm10_v2_chr6_+_141249161_141249269	0.302312	GCUACAU	ENSMUST00000043259.7|Pde3a|ENSMUSG00000041741.8|phosphodiesterase 3A, cGMP inhibited
mm10_v2_chr9_+_72532214_72532271	0.237797	GCUACAU	ENSMUST00000163401.2|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7 	ENSMUST00000093820.3|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7
mm10_v2_chr3_+_88532314_88532396	0.211536	GCUACAU	ENSMUST00000172699.1|Mex3a|ENSMUSG00000074480.4|mex3 homolog A (C. elegans)
mm10_v2_chr12_+_86678685_86678796	0.186533	GCUACAU	ENSMUST00000021681.3|Vash1|ENSMUSG00000021256.5|vasohibin 1
mm10_v2_chr6_-_124888192_124888221	0.173042	GCUACAU	ENSMUST00000024044.6|Cd4|ENSMUSG00000023274.8|CD4 antigen
mm10_v2_chr5_+_121397936_121398004	0.154763	GCUACAU	ENSMUST00000042163.8|Naa25|ENSMUSG00000042719.11|N(alpha)-acetyltransferase 25, NatB auxiliary subunit
mm10_v2_chr13_+_46418266_46418316	0.1413	GCUACAU	ENSMUST00000037923.3|Rbm24|ENSMUSG00000038132.5|RNA binding motif protein 24
mm10_v2_chr15_-_103340085_103340100	0.132232	GCUACAU	ENSMUST00000168828.1|Zfp385a|ENSMUSG00000000552.9|zinc finger protein 385A
mm10_v2_chr6_+_14901344_14901364	0.129824	GCUACAU	ENSMUST00000115477.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr4_+_136172367_136172395	0.119168	GCUACAU	ENSMUST00000061721.5|E2f2|ENSMUSG00000018983.9|E2F transcription factor 2
mm10_v2_chr8_-_31918203_31918368	0.117189	GCUACAU	ENSMUST00000073884.4|Nrg1|ENSMUSG00000062991.6|neuregulin 1
mm10_v2_chr7_+_16309577_16309641	0.115112	GCUACAU	ENSMUST00000002152.6|Bbc3|ENSMUSG00000002083.6|BCL2 binding component 3
mm10_v2_chr14_+_45351473_45351473	0.107823	GCUACAU	ENSMUST00000111835.2|Styx|ENSMUSG00000053205.8|serine/threonine/tyrosine interaction protein
mm10_v2_chr11_+_32347800_32347865	0.0987951	GCUACAU	ENSMUST00000038753.5|Sh3pxd2b|ENSMUSG00000040711.7|SH3 and PX domains 2B
mm10_v2_chr17_+_88440711_88440741	0.0938781	GCUACAU	ENSMUST00000112238.2|Foxn2|ENSMUSG00000034998.12|forkhead box N2 	ENSMUST00000155640.1|Foxn2|ENSMUSG00000034998.12|forkhead box N2
mm10_v2_chrX_-_142966709_142966734	0.0918831	GCUACAU	ENSMUST00000041317.2|Ammecr1|ENSMUSG00000042225.3|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
mm10_v2_chr2_+_122028544_122028563	0.0911152	GCUACAU	ENSMUST00000028668.7|Eif3j1|ENSMUSG00000027236.8|eukaryotic translation initiation factor 3, subunit J1
mm10_v2_chr7_+_110018301_110018425	0.0865547	GCUACAU	ENSMUST00000084731.3|Ipo7|ENSMUSG00000066232.3|importin 7
mm10_v2_chr4_-_91372028_91372069	0.0821273	GCUACAU	ENSMUST00000107110.1|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000008633.8|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000107118.1|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chr14_-_67072465_67072476	0.0818653	GCUACAU	ENSMUST00000089230.5|Ppp2r2a|ENSMUSG00000022052.8|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform
mm10_v2_chr12_+_85473883_85473896	0.0814998	GCUACAU	ENSMUST00000021674.6|Fos|ENSMUSG00000021250.7|FBJ osteosarcoma oncogene
mm10_v2_chrX_+_151198078_151198140	0.0794414	GCUACAU	ENSMUST00000184730.1|Wnk3|ENSMUSG00000041245.7|WNK lysine deficient protein kinase 3 	ENSMUST00000184392.1|Wnk3|ENSMUSG00000041245.7|WNK lysine deficient protein kinase 3 	ENSMUST00000096285.4|Wnk3|ENSMUSG00000041245.7|WNK lysine deficient protein kinase 3
mm10_v2_chr9_-_72111827_72111895	0.0756776	GCUACAU	ENSMUST00000183404.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12 	ENSMUST00000184783.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr5_+_105876532_105876585	0.0738017	GCUACAU	ENSMUST00000150440.1|Zfp326|ENSMUSG00000029290.6|zinc finger protein 326 	ENSMUST00000031227.4|Zfp326|ENSMUSG00000029290.6|zinc finger protein 326
mm10_v2_chr10_+_128377086_128377155	0.0707278	GCUACAU	ENSMUST00000014642.3|Ankrd52|ENSMUSG00000014498.3|ankyrin repeat domain 52
mm10_v2_chr9_+_74953053_74953091	0.0701593	GCUACAU	ENSMUST00000170846.1|Fam214a|ENSMUSG00000034858.9|family with sequence similarity 214, member A
mm10_v2_chr15_-_50889691_50889714	0.069589	GCUACAU	ENSMUST00000165201.2|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human) 	ENSMUST00000184458.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr18_-_77565050_77565162	0.0691644	GCUACAU	ENSMUST00000182153.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000182146.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000026494.7|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000182024.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165
mm10_v2_chr4_-_129189512_129189594	0.0646918	GCUACAU	ENSMUST00000117965.1|S100pbp|ENSMUSG00000040928.9|S100P binding protein 	ENSMUST00000106061.2|S100pbp|ENSMUSG00000040928.9|S100P binding protein 	ENSMUST00000072431.6|S100pbp|ENSMUSG00000040928.9|S100P binding protein
mm10_v2_chr18_+_69345721_69345811	0.0610771	GCUACAU	ENSMUST00000078486.6|Tcf4|ENSMUSG00000053477.9|transcription factor 4 	ENSMUST00000114982.1|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chrX_+_68678541_68678554	0.0591639	GCUACAU	ENSMUST00000088546.5|Fmr1|ENSMUSG00000000838.11|fragile X mental retardation syndrome 1
mm10_v2_chr3_+_65528404_65528431	0.0582699	GCUACAU	ENSMUST00000047906.3|Tiparp|ENSMUSG00000034640.3|TCDD-inducible poly(ADP-ribose) polymerase
mm10_v2_chr10_-_59951753_59951775	0.0582471	GCUACAU	ENSMUST00000020308.3|Ddit4|ENSMUSG00000020108.3|DNA-damage-inducible transcript 4
mm10_v2_chr4_-_56990332_56990396	0.0552499	GCUACAU	ENSMUST00000053681.5|Frrs1l|ENSMUSG00000045589.7|ferric-chelate reductase 1 like
mm10_v2_chr9_+_14276301_14276347	0.0537496	GCUACAU	ENSMUST00000034507.7|Sesn3|ENSMUSG00000032009.7|sestrin 3
mm10_v2_chr12_-_108003594_108003613	0.0526221	GCUACAU	ENSMUST00000066060.4|Bcl11b|ENSMUSG00000048251.9|B cell leukemia/lymphoma 11B
mm10_v2_chr8_+_46739745_46739791	0.0515994	GCUACAU	ENSMUST00000034041.7|Irf2|ENSMUSG00000031627.7|interferon regulatory factor 2
mm10_v2_chr1_-_134079114_134079120	0.0515217	GCUACAU	ENSMUST00000020692.6|Btg2|ENSMUSG00000020423.6|B cell translocation gene 2, anti-proliferative
mm10_v2_chr2_+_75659253_75659318	0.0492828	GCUACAU	ENSMUST00000111964.1|Hnrnpa3|ENSMUSG00000059005.7|heterogeneous nuclear ribonucleoprotein A3 	ENSMUST00000111962.1|Hnrnpa3|ENSMUSG00000059005.7|heterogeneous nuclear ribonucleoprotein A3 	ENSMUST00000111961.1|Hnrnpa3|ENSMUSG00000059005.7|heterogeneous nuclear ribonucleoprotein A3 	ENSMUST00000164947.2|Hnrnpa3|ENSMUSG00000059005.7|heterogeneous nuclear ribonucleoprotein A3 	ENSMUST00000090792.4|Hnrnpa3|ENSMUSG00000059005.7|heterogeneous nuclear ribonucleoprotein A3
mm10_v2_chr7_+_66109474_66109515	0.048985	GCUACAU	ENSMUST00000036372.6|Chsy1|ENSMUSG00000032640.9|chondroitin sulfate synthase 1
mm10_v2_chr15_+_40655020_40655054	0.0481999	GCUACAU	ENSMUST00000053467.4|Zfpm2|ENSMUSG00000022306.8|zinc finger protein, multitype 2
mm10_v2_chr7_+_126272589_126272619	0.0467877	GCUACAU	ENSMUST00000056028.9|Sbk1|ENSMUSG00000042978.9|SH3-binding kinase 1
mm10_v2_chr17_+_24414640_24414691	0.0455386	GCUACAU	ENSMUST00000115371.1|Rnps1|ENSMUSG00000034681.10|ribonucleic acid binding protein S1 	ENSMUST00000088512.5|Rnps1|ENSMUSG00000034681.10|ribonucleic acid binding protein S1 	ENSMUST00000163717.1|Rnps1|ENSMUSG00000034681.10|ribonucleic acid binding protein S1
mm10_v2_chr12_+_29528382_29528468	0.0450893	GCUACAU	ENSMUST00000049784.9|Myt1l|ENSMUSG00000061911.8|myelin transcription factor 1-like
mm10_v2_chr14_+_56887795_56887795	0.0446068	GCUACAU	ENSMUST00000022511.8|Zmym2|ENSMUSG00000021945.8|zinc finger, MYM-type 2
mm10_v2_chr19_+_41482632_41482688	0.0430985	GCUACAU	ENSMUST00000067795.5|Lcor|ENSMUSG00000025019.9|ligand dependent nuclear receptor corepressor
mm10_v2_chr11_+_72607221_72607307	0.0430127	GCUACAU	ENSMUST00000021148.6|Ube2g1|ENSMUSG00000020794.7|ubiquitin-conjugating enzyme E2G 1 	ENSMUST00000138247.1|Ube2g1|ENSMUSG00000020794.7|ubiquitin-conjugating enzyme E2G 1
mm10_v2_chr1_-_180813591_180813632	0.0428438	GCUACAU	ENSMUST00000162118.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A 	ENSMUST00000159685.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A 	ENSMUST00000161308.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A
mm10_v2_chr13_-_54766553_54766595	0.0422489	GCUACAU	ENSMUST00000036825.7|Sncb|ENSMUSG00000034891.7|synuclein, beta
mm10_v2_chr15_-_79742518_79742562	0.0394576	GCUACAU	ENSMUST00000089311.4|Sun2|ENSMUSG00000042524.7|Sad1 and UNC84 domain containing 2 	ENSMUST00000046259.7|Sun2|ENSMUSG00000042524.7|Sad1 and UNC84 domain containing 2
mm10_v2_chr2_+_153741274_153741294	0.0392824	GCUACAU	ENSMUST00000028981.8|Mapre1|ENSMUSG00000027479.8|microtubule-associated protein, RP/EB family, member 1
mm10_v2_chr11_+_77686155_77686179	0.0378768	GCUACAU	ENSMUST00000100802.4|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2 	ENSMUST00000181023.1|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2
mm10_v2_chr18_-_77713978_77714010	0.0377561	GCUACAU	ENSMUST00000074653.4|8030462N17Rik|ENSMUSG00000047466.9|RIKEN cDNA 8030462N17 gene
mm10_v2_chr18_+_35598607_35598653	0.0364763	GCUACAU	ENSMUST00000041314.8|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2 	ENSMUST00000115737.1|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2 	ENSMUST00000115736.1|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2 	ENSMUST00000115735.1|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2
mm10_v2_chr4_-_41314877_41314889	0.0361544	GCUACAU	ENSMUST00000030145.8|Dcaf12|ENSMUSG00000028436.8|DDB1 and CUL4 associated factor 12
mm10_v2_chr3_-_119783262_119783388	0.0358805	GCUACAU	ENSMUST00000029780.7|Ptbp2|ENSMUSG00000028134.7|polypyrimidine tract binding protein 2
mm10_v2_chr2_-_25580099_25580099	0.0353275	GCUACAU	ENSMUST00000114217.1|Gm996|ENSMUSG00000029419.7|predicted gene 996
mm10_v2_chr12_+_4917376_4917438	0.033332	GCUACAU	ENSMUST00000045664.5|Atad2b|ENSMUSG00000052812.4|ATPase family, AAA domain containing 2B
mm10_v2_chr5_+_150259922_150259936	0.0323824	GCUACAU	ENSMUST00000087204.5|Fry|ENSMUSG00000056602.8|furry homolog (Drosophila)
mm10_v2_chr2_+_75832168_75832194	0.0320394	GCUACAU	ENSMUST00000047232.7|Agps|ENSMUSG00000042410.9|alkylglycerone phosphate synthase 	ENSMUST00000111952.2|Agps|ENSMUSG00000042410.9|alkylglycerone phosphate synthase
mm10_v2_chr4_-_9643638_9643717	0.0314149	GCUACAU	ENSMUST00000108333.1|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000108334.1|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000108335.1|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000152526.1|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000103004.3|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase
mm10_v2_chr7_-_132813799_132813905	0.0309546	GCUACAU	ENSMUST00000097998.2|Fam53b|ENSMUSG00000030956.9|family with sequence similarity 53, member B
mm10_v2_chr19_+_60755947_60755987	0.0307482	GCUACAU	ENSMUST00000088237.4|Nanos1|ENSMUSG00000072437.3|nanos homolog 1 (Drosophila)
mm10_v2_chr17_-_42876417_42876431	0.0294397	GCUACAU	ENSMUST00000024709.7|Cd2ap|ENSMUSG00000061665.6|CD2-associated protein
mm10_v2_chr7_+_120677579_120677630	0.0287239	GCUACAU	ENSMUST00000060175.6|BC030336|ENSMUSG00000046096.6|cDNA sequence BC030336
mm10_v2_chr8_-_80739497_80739497	0.0280213	GCUACAU	ENSMUST00000043359.8|Smarca5|ENSMUSG00000031715.8|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
mm10_v2_chr2_+_124610573_124610613	0.0279637	GCUACAU	ENSMUST00000103239.3|Sema6d|ENSMUSG00000027200.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D 	ENSMUST00000103240.2|Sema6d|ENSMUSG00000027200.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm10_v2_chr8_-_110805863_110805952	0.0265313	GCUACAU	ENSMUST00000150680.1|Il34|ENSMUSG00000031750.9|interleukin 34 	ENSMUST00000076846.4|Il34|ENSMUSG00000031750.9|interleukin 34
mm10_v2_chr9_-_103364970_103364996	0.0262085	GCUACAU	ENSMUST00000116517.2|Cdv3|ENSMUSG00000032803.8|carnitine deficiency-associated gene expressed in ventricle 3
mm10_v2_chr11_+_17159263_17159357	0.0260701	GCUACAU	ENSMUST00000102880.4|Ppp3r1|ENSMUSG00000033953.10|protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)
mm10_v2_chr4_+_33031371_33031524	0.0253273	GCUACAU	ENSMUST00000124992.1|Ube2j1|ENSMUSG00000028277.7|ubiquitin-conjugating enzyme E2J 1
mm10_v2_chr2_+_102658640_102658669	0.0252837	GCUACAU	ENSMUST00000080210.3|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm10_v2_chr14_+_54360826_54360851	0.0248151	GCUACAU	ENSMUST00000000985.5|Oxa1l|ENSMUSG00000000959.5|oxidase assembly 1-like
mm10_v2_chr13_-_111490111_111490139	0.0244884	GCUACAU	ENSMUST00000047627.7|Gpbp1|ENSMUSG00000032745.11|GC-rich promoter binding protein 1
mm10_v2_chr8_-_85555261_85555315	0.0242365	GCUACAU	ENSMUST00000034138.5|Dnaja2|ENSMUSG00000031701.5|DnaJ (Hsp40) homolog, subfamily A, member 2
mm10_v2_chr3_+_101377074_101377158	0.0236234	GCUACAU	ENSMUST00000043983.5|Igsf3|ENSMUSG00000042035.6|immunoglobulin superfamily, member 3
mm10_v2_chrX_-_108834303_108834381	0.0232485	GCUACAU	ENSMUST00000101283.3|Brwd3|ENSMUSG00000063663.5|bromodomain and WD repeat domain containing 3 	ENSMUST00000150434.1|Brwd3|ENSMUSG00000063663.5|bromodomain and WD repeat domain containing 3
mm10_v2_chr18_+_84088077_84088178	0.0221809	GCUACAU	ENSMUST00000060223.2|Zadh2|ENSMUSG00000049090.2|zinc binding alcohol dehydrogenase, domain containing 2
mm10_v2_chr2_-_5714490_5714538	0.022036	GCUACAU	ENSMUST00000044009.7|Camk1d|ENSMUSG00000039145.10|calcium/calmodulin-dependent protein kinase ID
mm10_v2_chr14_-_69284982_69285112	0.0211506	GCUACAU	ENSMUST00000183882.1|Slc25a37|ENSMUSG00000034248.7|solute carrier family 25, member 37 	ENSMUST00000037064.4|Slc25a37|ENSMUSG00000034248.7|solute carrier family 25, member 37
mm10_v2_chr13_-_48968004_48968029	0.0197155	GCUACAU	ENSMUST00000060805.6|Fam120a|ENSMUSG00000038014.7|family with sequence similarity 120, member A
mm10_v2_chr5_+_88886809_88886825	0.0195029	GCUACAU	ENSMUST00000148750.1|Slc4a4|ENSMUSG00000060961.8|solute carrier family 4 (anion exchanger), member 4
mm10_v2_chr4_+_115784799_115784837	0.0193499	GCUACAU	ENSMUST00000177280.1|Atpaf1|ENSMUSG00000028710.10|ATP synthase mitochondrial F1 complex assembly factor 1 	ENSMUST00000176047.1|Atpaf1|ENSMUSG00000028710.10|ATP synthase mitochondrial F1 complex assembly factor 1 	ENSMUST00000030478.6|Atpaf1|ENSMUSG00000028710.10|ATP synthase mitochondrial F1 complex assembly factor 1
mm10_v2_chr3_-_103791537_103791563	0.0189569	GCUACAU	ENSMUST00000118317.1|Hipk1|ENSMUSG00000008730.11|homeodomain interacting protein kinase 1
mm10_v2_chr7_-_38019505_38019552	0.0186908	GCUACAU	ENSMUST00000085513.4|Uri1|ENSMUSG00000030421.8|URI1, prefoldin-like chaperone
mm10_v2_chr10_-_37138863_37138937	0.0184554	GCUACAU	ENSMUST00000092584.5|Marcks|ENSMUSG00000069662.5|myristoylated alanine rich protein kinase C substrate
mm10_v2_chr2_+_33216051_33216084	0.0178035	GCUACAU	ENSMUST00000004208.5|Angptl2|ENSMUSG00000004105.6|angiopoietin-like 2
mm10_v2_chrX_-_88115632_88115675	0.0172462	GCUACAU	ENSMUST00000113966.1|Il1rapl1|ENSMUSG00000052372.4|interleukin 1 receptor accessory protein-like 1 	ENSMUST00000113964.1|Il1rapl1|ENSMUSG00000052372.4|interleukin 1 receptor accessory protein-like 1
mm10_v2_chr6_+_8209216_8209263	0.0172016	GCUACAU	ENSMUST00000040017.7|Mios|ENSMUSG00000042447.7|missing oocyte, meiosis regulator, homolog (Drosophila)
mm10_v2_chr4_-_58912678_58912776	0.0171952	GCUACAU	ENSMUST00000144512.1|AI314180|ENSMUSG00000050812.12|expressed sequence AI314180 	ENSMUST00000102889.3|AI314180|ENSMUSG00000050812.12|expressed sequence AI314180 	ENSMUST00000055822.8|AI314180|ENSMUSG00000050812.12|expressed sequence AI314180
mm10_v2_chr8_-_47352348_47352367	0.0169986	GCUACAU	ENSMUST00000110367.2|Stox2|ENSMUSG00000038143.8|storkhead box 2
mm10_v2_chr12_-_55821157_55821195	0.0167355	GCUACAU	ENSMUST00000110687.1|Ralgapa1|ENSMUSG00000021027.9|Ral GTPase activating protein, alpha subunit 1 	ENSMUST00000085385.5|Ralgapa1|ENSMUSG00000021027.9|Ral GTPase activating protein, alpha subunit 1
mm10_v2_chr8_-_104395765_104395858	0.0164326	GCUACAU	ENSMUST00000179802.1|Cmtm4|ENSMUSG00000096188.1|CKLF-like MARVEL transmembrane domain containing 4
mm10_v2_chr5_-_3803081_3803119	0.0163043	GCUACAU	ENSMUST00000043551.6|Ankib1|ENSMUSG00000040351.7|ankyrin repeat and IBR domain containing 1
mm10_v2_chr10_-_62880014_62880014	0.0161892	GCUACAU	ENSMUST00000050826.7|Tet1|ENSMUSG00000047146.9|tet methylcytosine dioxygenase 1
mm10_v2_chr10_-_117148474_117148510	0.0156708	GCUACAU	ENSMUST00000020381.3|Frs2|ENSMUSG00000020170.3|fibroblast growth factor receptor substrate 2
mm10_v2_chr13_+_119428888_119428960	0.0156032	GCUACAU	ENSMUST00000026520.7|Paip1|ENSMUSG00000025451.9|polyadenylate binding protein-interacting protein 1
mm10_v2_chr18_-_73703739_73703806	0.015009	GCUACAU	ENSMUST00000025393.7|Smad4|ENSMUSG00000024515.7|SMAD family member 4
mm10_v2_chr10_+_40349265_40349387	0.0148983	GCUACAU	ENSMUST00000044672.4|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19 	ENSMUST00000095743.2|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19
mm10_v2_chr8_+_11758329_11758375	0.0146804	GCUACAU	ENSMUST00000074856.6|Arhgef7|ENSMUSG00000031511.8|Rho guanine nucleotide exchange factor (GEF7) 	ENSMUST00000098938.2|Arhgef7|ENSMUSG00000031511.8|Rho guanine nucleotide exchange factor (GEF7)
mm10_v2_chr7_-_83884289_83884341	0.014108	GCUACAU	ENSMUST00000094216.3|Mesdc1|ENSMUSG00000070462.3|mesoderm development candidate 1
mm10_v2_chr16_-_8792302_8792326	0.0140846	GCUACAU	ENSMUST00000160405.1|Usp7|ENSMUSG00000022710.11|ubiquitin specific peptidase 7
mm10_v2_chr5_+_86804214_86804276	0.0137957	GCUACAU	ENSMUST00000119339.1|Ythdc1|ENSMUSG00000035851.8|YTH domain containing 1 	ENSMUST00000120498.1|Ythdc1|ENSMUSG00000035851.8|YTH domain containing 1
mm10_v2_chr13_-_45964964_45965001	0.0130073	GCUACAU	ENSMUST00000180110.1|Atxn1|ENSMUSG00000046876.9|ataxin 1 	ENSMUST00000091628.3|Atxn1|ENSMUSG00000046876.9|ataxin 1 	ENSMUST00000167708.2|Atxn1|ENSMUSG00000046876.9|ataxin 1
mm10_v2_chr11_-_74724670_74724702	0.0129488	GCUACAU	ENSMUST00000021091.8|Pafah1b1|ENSMUSG00000020745.9|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
mm10_v2_chr6_-_38876163_38876234	0.0124989	GCUACAU	ENSMUST00000161779.1|Hipk2|ENSMUSG00000061436.9|homeodomain interacting protein kinase 2
mm10_v2_chr4_-_133753611_133753666	0.0118	GCUACAU	ENSMUST00000145664.2|Arid1a|ENSMUSG00000007880.10|AT rich interactive domain 1A (SWI-like) 	ENSMUST00000105897.3|Arid1a|ENSMUSG00000007880.10|AT rich interactive domain 1A (SWI-like)
mm10_v2_chr8_+_92357787_92357801	0.0117436	GCUACAU	ENSMUST00000034184.10|Irx5|ENSMUSG00000031737.10|Iroquois related homeobox 5 (Drosophila)
mm10_v2_chr4_-_134245579_134245604	0.0116342	GCUACAU	ENSMUST00000030644.7|Zfp593|ENSMUSG00000028840.10|zinc finger protein 593
mm10_v2_chr10_-_82764088_82764144	0.0115064	GCUACAU	ENSMUST00000130911.1|Nfyb|ENSMUSG00000020248.12|nuclear transcription factor-Y beta
mm10_v2_chr17_-_47611449_47611544	0.0115058	GCUACAU	ENSMUST00000024783.8|Bysl|ENSMUSG00000023988.8|bystin-like
mm10_v2_chr6_-_99266494_99266540	0.0105828	GCUACAU	ENSMUST00000113326.2|Foxp1|ENSMUSG00000030067.11|forkhead box P1
mm10_v2_chr3_-_127409044_127409064	0.00957111	GCUACAU	ENSMUST00000182704.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr10_-_116581478_116581511	0.00953535	GCUACAU	ENSMUST00000105267.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000105265.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000167706.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000168036.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000169921.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000020374.5|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2
mm10_v2_chr17_-_44736648_44736674	0.00926138	GCUACAU	ENSMUST00000113572.2|Runx2|ENSMUSG00000039153.10|runt related transcription factor 2
mm10_v2_chr5_-_135934590_135934613	0.00920362	GCUACAU	ENSMUST00000055808.5|Ywhag|ENSMUSG00000051391.8|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm10_v2_chr19_+_36554661_36554688	0.00859074	GCUACAU	ENSMUST00000169036.2|Hectd2|ENSMUSG00000041180.7|HECT domain containing 2 	ENSMUST00000047247.5|Hectd2|ENSMUSG00000041180.7|HECT domain containing 2
mm10_v2_chr17_-_10319324_10319380	0.00813103	GCUACAU	ENSMUST00000097414.3|Qk|ENSMUSG00000062078.8|quaking 	ENSMUST00000042296.7|Qk|ENSMUSG00000062078.8|quaking
mm10_v2_chr7_-_73541738_73541758	0.00805416	GCUACAU	ENSMUST00000169922.2|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr5_-_20951769_20951824	0.00781125	GCUACAU	ENSMUST00000036489.5|Rsbn1l|ENSMUSG00000039968.5|round spermatid basic protein 1-like
mm10_v2_chr1_-_182341585_182341625	0.00666895	GCUACAU	ENSMUST00000051431.4|Fbxo28|ENSMUSG00000047539.4|F-box protein 28
mm10_v2_chr1_-_151428440_151428474	0.00649792	GCUACAU	ENSMUST00000064771.5|Swt1|ENSMUSG00000052748.8|SWT1 RNA endoribonuclease homolog (S. cerevisiae)
mm10_v2_chr19_+_25610533_25610553	0.00632021	GCUACAU	ENSMUST00000048935.4|Dmrt3|ENSMUSG00000042372.4|doublesex and mab-3 related transcription factor 3
mm10_v2_chr1_-_64121456_64121491	0.00630586	GCUACAU	ENSMUST00000142009.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous) 	ENSMUST00000114086.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous)
mm10_v2_chr5_-_138155694_138155744	0.00563081	GCUACAU	ENSMUST00000132318.1|Zfp113|ENSMUSG00000037007.11|zinc finger protein 113 	ENSMUST00000049393.8|Zfp113|ENSMUSG00000037007.11|zinc finger protein 113
mm10_v2_chr5_-_25498702_25498745	0.00511115	GCUACAU	ENSMUST00000173073.1|Kmt2c|ENSMUSG00000038056.9|lysine (K)-specific methyltransferase 2C 	ENSMUST00000045291.7|Kmt2c|ENSMUSG00000038056.9|lysine (K)-specific methyltransferase 2C
mm10_v2_chr6_-_39725448_39725478	0.00490149	GCUACAU	ENSMUST00000002487.8|Braf|ENSMUSG00000002413.9|Braf transforming gene
mm10_v2_chr11_+_97663366_97663414	0.00479961	GCUACAU	ENSMUST00000044730.5|Mllt6|ENSMUSG00000038437.5|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6
mm10_v2_chr11_+_97362396_97362551	0.00451602	GCUACAU	ENSMUST00000045540.3|Socs7|ENSMUSG00000038485.5|suppressor of cytokine signaling 7
mm10_v2_chr19_-_53390559_53390581	0.00413545	GCUACAU	ENSMUST00000025997.5|Smndc1|ENSMUSG00000025024.6|survival motor neuron domain containing 1
mm10_v2_chr3_+_94837533_94837567	0.00388454	GCUACAU	ENSMUST00000107270.2|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain
mm10_v2_chr7_-_144470714_144470770	0.00356324	GCUACAU	ENSMUST00000033407.6|Cttn|ENSMUSG00000031078.9|cortactin
mm10_v2_chr1_+_167689108_167689239	0.00345632	GCUACAU	ENSMUST00000111377.1|Lmx1a|ENSMUSG00000026686.8|LIM homeobox transcription factor 1 alpha
mm10_v2_chr4_+_108619925_108619994	0.00264935	GCUACAU	ENSMUST00000030320.6|Cc2d1b|ENSMUSG00000028582.8|coiled-coil and C2 domain containing 1B
mm10_v2_chr7_+_97579868_97579901	0.00185423	GCUACAU	ENSMUST00000042399.7|Rsf1|ENSMUSG00000035623.8|remodeling and spacing factor 1 	ENSMUST00000107153.1|Rsf1|ENSMUSG00000035623.8|remodeling and spacing factor 1
mm10_v2_chr18_+_36281069_36281151	0.00139574	GCUACAU	ENSMUST00000051301.3|Pura|ENSMUSG00000043991.3|purine rich element binding protein A
mm10_v2_chr13_-_8871696_8871749	0.00137903	GCUACAU	ENSMUST00000054251.6|Wdr37|ENSMUSG00000021147.10|WD repeat domain 37 	ENSMUST00000176813.1|Wdr37|ENSMUSG00000021147.10|WD repeat domain 37
mm10_v2_chr11_-_46166397_46166508	0.000945631	GCUACAU	ENSMUST00000020679.2|Nipal4|ENSMUSG00000020411.2|NIPA-like domain containing 4
mm10_v2_chr14_+_26638074_26638151	0.000872082	GCUACAU	ENSMUST00000022429.2|Arf4|ENSMUSG00000021877.5|ADP-ribosylation factor 4
mm10_v2_chr10_+_56377300_56377338	0.000469104	GCUACAU	ENSMUST00000068581.7|Gja1|ENSMUSG00000050953.9|gap junction protein, alpha 1
mm10_v2_chr2_-_60125651_60125775	0.000308451	GCUACAU	ENSMUST00000112550.1|Baz2b|ENSMUSG00000026987.10|bromodomain adjacent to zinc finger domain, 2B
mm10_v2_chr9_+_101074727_101074727	7.85517e-05	GCUACAU	ENSMUST00000085177.3|Msl2|ENSMUSG00000066415.3|male-specific lethal 2 homolog (Drosophila)
mm10_v2_chr13_+_45389734_45389750	7.30259e-07	GCUACAU	ENSMUST00000038275.9|Mylip|ENSMUSG00000038175.9|myosin regulatory light chain interacting protein
