mm10_v2_chr19_+_38930909_38930920	0.529444	GGAAGAC	ENSMUST00000025965.5|Hells|ENSMUSG00000025001.5|helicase, lymphoid specific
mm10_v2_chrX_-_7671341_7671397	0.256062	GGAAGAC	ENSMUST00000033486.5|Plp2|ENSMUSG00000031146.6|proteolipid protein 2
mm10_v2_chr1_+_187997821_187997834	0.212654	GGAAGAC	ENSMUST00000027906.6|Esrrg|ENSMUSG00000026610.7|estrogen-related receptor gamma
mm10_v2_chr12_+_59013379_59013398	0.203739	GGAAGAC	ENSMUST00000021379.7|Gemin2|ENSMUSG00000060121.9|gem (nuclear organelle) associated protein 2
mm10_v2_chr12_-_26415256_26415303	0.198895	GGAAGAC	ENSMUST00000020971.6|Rnf144a|ENSMUSG00000020642.6|ring finger protein 144A 	ENSMUST00000062149.4|Rnf144a|ENSMUSG00000020642.6|ring finger protein 144A
mm10_v2_chr3_+_138526174_138526191	0.197871	GGAAGAC	ENSMUST00000029803.7|Eif4e|ENSMUSG00000028156.8|eukaryotic translation initiation factor 4E
mm10_v2_chr6_+_85431970_85432010	0.191711	GGAAGAC	ENSMUST00000045693.7|Smyd5|ENSMUSG00000033706.7|SET and MYND domain containing 5
mm10_v2_chr1_+_180568913_180568960	0.185755	GGAAGAC	ENSMUST00000027777.6|Parp1|ENSMUSG00000026496.6|poly (ADP-ribose) polymerase family, member 1
mm10_v2_chr9_+_72532214_72532271	0.172005	GGAAGAC	ENSMUST00000163401.2|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7 	ENSMUST00000093820.3|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7
mm10_v2_chr11_-_75796048_75796081	0.169123	GGAAGAC	ENSMUST00000021209.7|Doc2b|ENSMUSG00000020848.7|double C2, beta
mm10_v2_chr13_+_91461050_91461125	0.168868	GGAAGAC	ENSMUST00000004094.8|Ssbp2|ENSMUSG00000003992.8|single-stranded DNA binding protein 2 	ENSMUST00000042122.8|Ssbp2|ENSMUSG00000003992.8|single-stranded DNA binding protein 2
mm10_v2_chr7_+_3332918_3332955	0.166206	GGAAGAC	ENSMUST00000092891.4|Cacng7|ENSMUSG00000069806.4|calcium channel, voltage-dependent, gamma subunit 7
mm10_v2_chr19_-_37330613_37330613	0.146313	GGAAGAC	ENSMUST00000131070.1|Ide|ENSMUSG00000056999.8|insulin degrading enzyme
mm10_v2_chr6_-_60829826_60829855	0.143189	GGAAGAC	ENSMUST00000163779.1|Snca|ENSMUSG00000025889.7|synuclein, alpha
mm10_v2_chr18_+_59175333_59175406	0.141943	GGAAGAC	ENSMUST00000080721.4|Chsy3|ENSMUSG00000058152.7|chondroitin sulfate synthase 3
mm10_v2_chr10_-_84533884_84533896	0.130795	GGAAGAC	ENSMUST00000053871.3|Ckap4|ENSMUSG00000046841.4|cytoskeleton-associated protein 4
mm10_v2_chr15_+_41789495_41789527	0.130052	GGAAGAC	ENSMUST00000090095.5|Oxr1|ENSMUSG00000022307.9|oxidation resistance 1 	ENSMUST00000022918.7|Oxr1|ENSMUSG00000022307.9|oxidation resistance 1
mm10_v2_chr15_+_93398344_93398464	0.126394	GGAAGAC	ENSMUST00000109256.3|Pphln1|ENSMUSG00000036167.9|periphilin 1 	ENSMUST00000068457.7|Pphln1|ENSMUSG00000036167.9|periphilin 1 	ENSMUST00000049122.8|Pphln1|ENSMUSG00000036167.9|periphilin 1 	ENSMUST00000165935.1|Pphln1|ENSMUSG00000036167.9|periphilin 1
mm10_v2_chr18_+_69345721_69345811	0.125329	GGAAGAC	ENSMUST00000078486.6|Tcf4|ENSMUSG00000053477.9|transcription factor 4 	ENSMUST00000114982.1|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr2_-_156887056_156887084	0.117057	GGAAGAC	ENSMUST00000029164.2|Sla2|ENSMUSG00000027636.5|Src-like-adaptor 2
mm10_v2_chr7_+_18925863_18925899	0.110345	GGAAGAC	ENSMUST00000172835.1|Nova2|ENSMUSG00000030411.9|neuro-oncological ventral antigen 2 	ENSMUST00000032571.8|Nova2|ENSMUSG00000030411.9|neuro-oncological ventral antigen 2
mm10_v2_chr10_+_76531593_76531635	0.110119	GGAAGAC	ENSMUST00000048678.6|Lss|ENSMUSG00000033105.6|lanosterol synthase
mm10_v2_chr11_-_118909487_118909575	0.109105	GGAAGAC	ENSMUST00000117731.1|Rbfox3|ENSMUSG00000025576.11|RNA binding protein, fox-1 homolog (C. elegans) 3 	ENSMUST00000106278.2|Rbfox3|ENSMUSG00000025576.11|RNA binding protein, fox-1 homolog (C. elegans) 3 	ENSMUST00000120061.1|Rbfox3|ENSMUSG00000025576.11|RNA binding protein, fox-1 homolog (C. elegans) 3 	ENSMUST00000017576.4|Rbfox3|ENSMUSG00000025576.11|RNA binding protein, fox-1 homolog (C. elegans) 3
mm10_v2_chr16_-_5132458_5132483	0.108267	GGAAGAC	ENSMUST00000035672.3|Ppl|ENSMUSG00000039457.3|periplakin
mm10_v2_chr8_-_22398588_22398621	0.106918	GGAAGAC	ENSMUST00000033871.6|Slc25a15|ENSMUSG00000031482.8|solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15
mm10_v2_chr11_+_22990519_22990654	0.106896	GGAAGAC	ENSMUST00000173867.1|Cct4|ENSMUSG00000007739.4|chaperonin containing Tcp1, subunit 4 (delta) 	ENSMUST00000020562.4|Cct4|ENSMUSG00000007739.4|chaperonin containing Tcp1, subunit 4 (delta)
mm10_v2_chr1_-_143776973_143777068	0.10256	GGAAGAC	ENSMUST00000159879.1|Trove2|ENSMUSG00000018199.8|TROVE domain family, member 2
mm10_v2_chr7_+_110018301_110018425	0.098494	GGAAGAC	ENSMUST00000084731.3|Ipo7|ENSMUSG00000066232.3|importin 7
mm10_v2_chrX_+_73673150_73673242	0.097888	GGAAGAC	ENSMUST00000033752.7|Slc6a8|ENSMUSG00000019558.8|solute carrier family 6 (neurotransmitter transporter, creatine), member 8 	ENSMUST00000114467.2|Slc6a8|ENSMUSG00000019558.8|solute carrier family 6 (neurotransmitter transporter, creatine), member 8
mm10_v2_chr9_-_72111827_72111895	0.0976248	GGAAGAC	ENSMUST00000183404.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12 	ENSMUST00000184783.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr11_-_102185202_102185238	0.0971741	GGAAGAC	ENSMUST00000107156.2|Lsm12|ENSMUSG00000020922.5|LSM12 homolog (S. cerevisiae)
mm10_v2_chr14_-_98169542_98169595	0.0957775	GGAAGAC	ENSMUST00000069334.7|Dach1|ENSMUSG00000055639.10|dachshund 1 (Drosophila) 	ENSMUST00000071533.6|Dach1|ENSMUSG00000055639.10|dachshund 1 (Drosophila)
mm10_v2_chr18_+_11052487_11052510	0.0950756	GGAAGAC	ENSMUST00000047762.7|Gata6|ENSMUSG00000005836.8|GATA binding protein 6
mm10_v2_chr11_+_52360824_52360935	0.0935899	GGAAGAC	ENSMUST00000102758.1|Vdac1|ENSMUSG00000020402.5|voltage-dependent anion channel 1
mm10_v2_chr2_+_156863110_156863170	0.0885291	GGAAGAC	ENSMUST00000029165.3|1110008F13Rik|ENSMUSG00000027637.3|RIKEN cDNA 1110008F13 gene
mm10_v2_chr7_-_43489967_43490075	0.0879901	GGAAGAC	ENSMUST00000107974.1|Iglon5|ENSMUSG00000013367.4|IgLON family member 5
mm10_v2_chr17_-_74294834_74294883	0.0859907	GGAAGAC	ENSMUST00000078459.6|Memo1|ENSMUSG00000058704.7|mediator of cell motility 1
mm10_v2_chr2_-_155514796_155514860	0.0781839	GGAAGAC	ENSMUST00000029131.4|Ggt7|ENSMUSG00000027603.9|gamma-glutamyltransferase 7
mm10_v2_chr2_-_126876209_126876267	0.0772272	GGAAGAC	ENSMUST00000103224.3|Trpm7|ENSMUSG00000027365.8|transient receptor potential cation channel, subfamily M, member 7
mm10_v2_chr16_+_32608920_32608964	0.0762383	GGAAGAC	ENSMUST00000023486.8|Tfrc|ENSMUSG00000022797.9|transferrin receptor
mm10_v2_chr2_-_60963192_60963251	0.0760032	GGAAGAC	ENSMUST00000028347.6|Rbms1|ENSMUSG00000026970.10|RNA binding motif, single stranded interacting protein 1
mm10_v2_chr16_-_11254268_11254303	0.0753154	GGAAGAC	ENSMUST00000167571.1|Gspt1|ENSMUSG00000062203.8|G1 to S phase transition 1
mm10_v2_chr5_+_146384947_146384994	0.0727279	GGAAGAC	ENSMUST00000110600.1|Wasf3|ENSMUSG00000029636.7|WAS protein family, member 3 	ENSMUST00000016143.7|Wasf3|ENSMUSG00000029636.7|WAS protein family, member 3
mm10_v2_chr11_+_52232009_52232041	0.0711252	GGAAGAC	ENSMUST00000037324.5|Skp1a|ENSMUSG00000036309.8|S-phase kinase-associated protein 1A 	ENSMUST00000166537.1|Skp1a|ENSMUSG00000036309.8|S-phase kinase-associated protein 1A
mm10_v2_chr6_+_8209216_8209263	0.070146	GGAAGAC	ENSMUST00000040017.7|Mios|ENSMUSG00000042447.7|missing oocyte, meiosis regulator, homolog (Drosophila)
mm10_v2_chr16_+_7069825_7069846	0.0695854	GGAAGAC	ENSMUST00000056416.7|Rbfox1|ENSMUSG00000008658.9|RNA binding protein, fox-1 homolog (C. elegans) 1
mm10_v2_chr1_+_131910458_131910539	0.0694577	GGAAGAC	ENSMUST00000062264.6|Nucks1|ENSMUSG00000026434.6|nuclear casein kinase and cyclin-dependent kinase substrate 1
mm10_v2_chr17_+_27655572_27655622	0.0691907	GGAAGAC	ENSMUST00000045896.3|Pacsin1|ENSMUSG00000040276.8|protein kinase C and casein kinase substrate in neurons 1
mm10_v2_chr8_-_47352348_47352367	0.0690965	GGAAGAC	ENSMUST00000110367.2|Stox2|ENSMUSG00000038143.8|storkhead box 2
mm10_v2_chr7_-_28312027_28312072	0.0685757	GGAAGAC	ENSMUST00000081946.4|Timm50|ENSMUSG00000003438.11|translocase of inner mitochondrial membrane 50
mm10_v2_chr4_+_106561027_106561038	0.0682724	GGAAGAC	ENSMUST00000047973.3|Dhcr24|ENSMUSG00000034926.3|24-dehydrocholesterol reductase
mm10_v2_chr2_+_131186942_131186971	0.0676807	GGAAGAC	ENSMUST00000028804.8|Cdc25b|ENSMUSG00000027330.10|cell division cycle 25B 	ENSMUST00000079857.8|Cdc25b|ENSMUSG00000027330.10|cell division cycle 25B
mm10_v2_chr4_-_15149051_15149131	0.0676532	GGAAGAC	ENSMUST00000041606.7|Necab1|ENSMUSG00000040536.9|N-terminal EF-hand calcium binding protein 1
mm10_v2_chr5_+_124439891_124439991	0.0674293	GGAAGAC	ENSMUST00000059580.4|Setd8|ENSMUSG00000049327.11|SET domain containing (lysine methyltransferase) 8
mm10_v2_chr10_-_62486772_62486805	0.0647655	GGAAGAC	ENSMUST00000105447.3|Vps26a|ENSMUSG00000020078.9|vacuolar protein sorting 26 homolog A (yeast)
mm10_v2_chr10_+_94147982_94148023	0.0637779	GGAAGAC	ENSMUST00000105290.2|Nr2c1|ENSMUSG00000005897.8|nuclear receptor subfamily 2, group C, member 1
mm10_v2_chr12_+_76370266_76370266	0.0637533	GGAAGAC	ENSMUST00000042779.3|Zbtb1|ENSMUSG00000033454.6|zinc finger and BTB domain containing 1
mm10_v2_chr5_-_31295862_31295942	0.063699	GGAAGAC	ENSMUST00000041266.7|Fndc4|ENSMUSG00000038552.8|fibronectin type III domain containing 4 	ENSMUST00000172435.1|Fndc4|ENSMUSG00000038552.8|fibronectin type III domain containing 4
mm10_v2_chr3_-_116614587_116614587	0.0635844	GGAAGAC	ENSMUST00000041524.4|Trmt13|ENSMUSG00000033439.6|tRNA methyltransferase 13
mm10_v2_chr2_+_124610573_124610613	0.062326	GGAAGAC	ENSMUST00000103239.3|Sema6d|ENSMUSG00000027200.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D 	ENSMUST00000103240.2|Sema6d|ENSMUSG00000027200.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm10_v2_chr18_+_34777008_34777075	0.0599705	GGAAGAC	ENSMUST00000043775.7|Kdm3b|ENSMUSG00000038773.10|KDM3B lysine (K)-specific demethylase 3B
mm10_v2_chr8_+_13869641_13869740	0.059212	GGAAGAC	ENSMUST00000051870.7|Champ1|ENSMUSG00000047710.7|chromosome alignment maintaining phosphoprotein 1 	ENSMUST00000128557.1|Champ1|ENSMUSG00000047710.7|chromosome alignment maintaining phosphoprotein 1
mm10_v2_chr11_+_72607221_72607307	0.0581449	GGAAGAC	ENSMUST00000021148.6|Ube2g1|ENSMUSG00000020794.7|ubiquitin-conjugating enzyme E2G 1 	ENSMUST00000138247.1|Ube2g1|ENSMUSG00000020794.7|ubiquitin-conjugating enzyme E2G 1
mm10_v2_chr15_-_97055942_97055964	0.0575046	GGAAGAC	ENSMUST00000023101.3|Slc38a4|ENSMUSG00000022464.7|solute carrier family 38, member 4
mm10_v2_chr1_-_181842334_181842401	0.0552368	GGAAGAC	ENSMUST00000005003.6|Lbr|ENSMUSG00000004880.6|lamin B receptor
mm10_v2_chr9_-_65827544_65827576	0.0533326	GGAAGAC	ENSMUST00000159109.1|Zfp609|ENSMUSG00000040524.9|zinc finger protein 609
mm10_v2_chr11_-_102697710_102697782	0.0506766	GGAAGAC	ENSMUST00000164506.2|Ccdc43|ENSMUSG00000020925.10|coiled-coil domain containing 43 	ENSMUST00000092569.6|Ccdc43|ENSMUSG00000020925.10|coiled-coil domain containing 43
mm10_v2_chr12_-_51691883_51691925	0.050005	GGAAGAC	ENSMUST00000013130.8|Strn3|ENSMUSG00000020954.9|striatin, calmodulin binding protein 3 	ENSMUST00000169503.1|Strn3|ENSMUSG00000020954.9|striatin, calmodulin binding protein 3
mm10_v2_chr11_-_22982090_22982382	0.0497516	GGAAGAC	ENSMUST00000160826.1|RP23-242C19.7|ENSMUSG00000098650.1|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 (B3gnt2), transcript variant 2, mRNA 	ENSMUST00000093270.5|Commd1|ENSMUSG00000051355.12|COMM domain containing 1 	ENSMUST00000071068.8|Commd1|ENSMUSG00000051355.12|COMM domain containing 1 	ENSMUST00000159081.1|Commd1|ENSMUSG00000051355.12|COMM domain containing 1
mm10_v2_chr4_+_48045144_48045160	0.0496782	GGAAGAC	ENSMUST00000030025.3|Nr4a3|ENSMUSG00000028341.3|nuclear receptor subfamily 4, group A, member 3
mm10_v2_chr3_+_34020075_34020082	0.0467833	GGAAGAC	ENSMUST00000001620.8|Fxr1|ENSMUSG00000027680.9|fragile X mental retardation gene 1, autosomal homolog 	ENSMUST00000167354.1|Fxr1|ENSMUSG00000027680.9|fragile X mental retardation gene 1, autosomal homolog
mm10_v2_chr16_+_20651652_20651712	0.0464462	GGAAGAC	ENSMUST00000007212.8|Psmd2|ENSMUSG00000006998.9|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2
mm10_v2_chr11_-_86544754_86544805	0.0454811	GGAAGAC	ENSMUST00000138810.1|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1 	ENSMUST00000058286.2|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1 	ENSMUST00000154617.1|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1
mm10_v2_chr6_-_115675871_115675964	0.0445093	GGAAGAC	ENSMUST00000112949.1|Raf1|ENSMUSG00000000441.11|v-raf-leukemia viral oncogene 1
mm10_v2_chr3_-_104961695_104961728	0.0430053	GGAAGAC	ENSMUST00000029429.4|Wnt2b|ENSMUSG00000027840.4|wingless related MMTV integration site 2b
mm10_v2_chr16_+_92058270_92058328	0.0425467	GGAAGAC	ENSMUST00000047429.8|Mrps6|ENSMUSG00000039680.9|mitochondrial ribosomal protein S6 	ENSMUST00000113975.2|Slc5a3|ENSMUSG00000089774.2|solute carrier family 5 (inositol transporters), member 3
mm10_v2_chr15_-_96699698_96699717	0.0421297	GGAAGAC	ENSMUST00000023099.6|Slc38a2|ENSMUSG00000022462.6|solute carrier family 38, member 2
mm10_v2_chr11_+_101316200_101316275	0.0417591	GGAAGAC	ENSMUST00000142640.1|Psme3|ENSMUSG00000078652.3|proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki) 	ENSMUST00000019470.7|Psme3|ENSMUSG00000078652.3|proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)
mm10_v2_chr6_+_86078070_86078089	0.0405987	GGAAGAC	ENSMUST00000032069.5|Add2|ENSMUSG00000030000.8|adducin 2 (beta)
mm10_v2_chr14_-_100149764_100149764	0.0405862	GGAAGAC	ENSMUST00000097079.4|Klf12|ENSMUSG00000072294.4|Kruppel-like factor 12
mm10_v2_chr10_-_80671976_80671976	0.0387585	GGAAGAC	ENSMUST00000003433.6|Mknk2|ENSMUSG00000020190.9|MAP kinase-interacting serine/threonine kinase 2
mm10_v2_chr12_-_85824506_85824555	0.0385705	GGAAGAC	ENSMUST00000021676.5|0610007P14Rik|ENSMUSG00000021252.5|RIKEN cDNA 0610007P14 gene 	ENSMUST00000142331.1|0610007P14Rik|ENSMUSG00000021252.5|RIKEN cDNA 0610007P14 gene
mm10_v2_chr9_-_62980874_62980902	0.0385539	GGAAGAC	ENSMUST00000098651.4|Pias1|ENSMUSG00000032405.9|protein inhibitor of activated STAT 1
mm10_v2_chr2_+_75832168_75832194	0.038514	GGAAGAC	ENSMUST00000047232.7|Agps|ENSMUSG00000042410.9|alkylglycerone phosphate synthase 	ENSMUST00000111952.2|Agps|ENSMUSG00000042410.9|alkylglycerone phosphate synthase
mm10_v2_chr3_+_121426495_121426541	0.0382245	GGAAGAC	ENSMUST00000029773.8|Cnn3|ENSMUSG00000053931.7|calponin 3, acidic
mm10_v2_chr2_-_167188787_167188815	0.0381154	GGAAGAC	ENSMUST00000059826.8|Kcnb1|ENSMUSG00000050556.8|potassium voltage gated channel, Shab-related subfamily, member 1
mm10_v2_chr5_-_20951769_20951824	0.0377802	GGAAGAC	ENSMUST00000036489.5|Rsbn1l|ENSMUSG00000039968.5|round spermatid basic protein 1-like
mm10_v2_chr3_-_104864420_104864505	0.037034	GGAAGAC	ENSMUST00000094028.5|Capza1|ENSMUSG00000070372.7|capping protein (actin filament) muscle Z-line, alpha 1
mm10_v2_chr18_+_36793918_36793937	0.0369961	GGAAGAC	ENSMUST00000001419.8|Zmat2|ENSMUSG00000001383.8|zinc finger, matrin type 2
mm10_v2_chr1_-_152090308_152090332	0.0366531	GGAAGAC	ENSMUST00000044581.7|1700025G04Rik|ENSMUSG00000032666.10|RIKEN cDNA 1700025G04 gene
mm10_v2_chr3_+_88553716_88553806	0.036463	GGAAGAC	ENSMUST00000008748.6|Ubqln4|ENSMUSG00000008604.6|ubiquilin 4
mm10_v2_chr11_-_78751656_78751729	0.0361414	GGAAGAC	ENSMUST00000059468.4|Fam58b|ENSMUSG00000049489.4|family with sequence similarity 58, member B
mm10_v2_chr13_-_45964964_45965001	0.0356285	GGAAGAC	ENSMUST00000180110.1|Atxn1|ENSMUSG00000046876.9|ataxin 1 	ENSMUST00000091628.3|Atxn1|ENSMUSG00000046876.9|ataxin 1 	ENSMUST00000167708.2|Atxn1|ENSMUSG00000046876.9|ataxin 1
mm10_v2_chr2_-_34826071_34826087	0.0353553	GGAAGAC	ENSMUST00000113077.1|Fbxw2|ENSMUSG00000035949.9|F-box and WD-40 domain protein 2 	ENSMUST00000028220.3|Fbxw2|ENSMUSG00000035949.9|F-box and WD-40 domain protein 2
mm10_v2_chr5_+_143622440_143622459	0.0352873	GGAAGAC	ENSMUST00000116456.3|Cyth3|ENSMUSG00000018001.12|cytohesin 3
mm10_v2_chr3_-_144720315_144720336	0.0350291	GGAAGAC	ENSMUST00000163279.1|Sh3glb1|ENSMUSG00000037062.9|SH3-domain GRB2-like B1 (endophilin)
mm10_v2_chr9_+_45906513_45906569	0.0344329	GGAAGAC	ENSMUST00000039059.6|Pcsk7|ENSMUSG00000035382.8|proprotein convertase subtilisin/kexin type 7
mm10_v2_chr14_+_25694170_25694233	0.0343871	GGAAGAC	ENSMUST00000022419.6|Ppif|ENSMUSG00000021868.6|peptidylprolyl isomerase F (cyclophilin F)
mm10_v2_chr10_-_59951753_59951775	0.0340198	GGAAGAC	ENSMUST00000020308.3|Ddit4|ENSMUSG00000020108.3|DNA-damage-inducible transcript 4
mm10_v2_chr11_+_94629741_94629834	0.0337306	GGAAGAC	ENSMUST00000021239.6|Lrrc59|ENSMUSG00000020869.8|leucine rich repeat containing 59
mm10_v2_chr12_+_85473883_85473896	0.0335641	GGAAGAC	ENSMUST00000021674.6|Fos|ENSMUSG00000021250.7|FBJ osteosarcoma oncogene
mm10_v2_chr9_-_22052021_22052026	0.0333579	GGAAGAC	ENSMUST00000003501.7|Elavl3|ENSMUSG00000003410.7|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)
mm10_v2_chr3_+_146404631_146404738	0.0331666	GGAAGAC	ENSMUST00000106153.2|Ssx2ip|ENSMUSG00000036825.6|synovial sarcoma, X breakpoint 2 interacting protein 	ENSMUST00000039021.4|Ssx2ip|ENSMUSG00000036825.6|synovial sarcoma, X breakpoint 2 interacting protein 	ENSMUST00000106151.1|Ssx2ip|ENSMUSG00000036825.6|synovial sarcoma, X breakpoint 2 interacting protein 	ENSMUST00000149262.1|Ssx2ip|ENSMUSG00000036825.6|synovial sarcoma, X breakpoint 2 interacting protein
mm10_v2_chr11_+_58104229_58104366	0.0326538	GGAAGAC	ENSMUST00000108843.1|Cnot8|ENSMUSG00000020515.7|CCR4-NOT transcription complex, subunit 8 	ENSMUST00000134896.1|Cnot8|ENSMUSG00000020515.7|CCR4-NOT transcription complex, subunit 8
mm10_v2_chr18_+_34758890_34758906	0.0322363	GGAAGAC	ENSMUST00000049281.5|Fam53c|ENSMUSG00000034300.10|family with sequence similarity 53, member C
mm10_v2_chr16_+_64851991_64851996	0.0315821	GGAAGAC	ENSMUST00000067744.7|Cggbp1|ENSMUSG00000054604.7|CGG triplet repeat binding protein 1
mm10_v2_chr15_+_102406143_102406380	0.0301782	GGAAGAC	ENSMUST00000170884.1|Sp1|ENSMUSG00000001280.6|trans-acting transcription factor 1 	ENSMUST00000165924.1|Sp1|ENSMUSG00000001280.6|trans-acting transcription factor 1 	ENSMUST00000163709.1|Sp1|ENSMUSG00000001280.6|trans-acting transcription factor 1 	ENSMUST00000001326.6|Sp1|ENSMUSG00000001280.6|trans-acting transcription factor 1
mm10_v2_chr11_+_97362396_97362551	0.03013	GGAAGAC	ENSMUST00000045540.3|Socs7|ENSMUSG00000038485.5|suppressor of cytokine signaling 7
mm10_v2_chr13_+_15463837_15463980	0.0300205	GGAAGAC	ENSMUST00000110510.3|Gli3|ENSMUSG00000021318.9|GLI-Kruppel family member GLI3
mm10_v2_chr19_-_53390559_53390581	0.0295864	GGAAGAC	ENSMUST00000025997.5|Smndc1|ENSMUSG00000025024.6|survival motor neuron domain containing 1
mm10_v2_chr2_-_130638094_130638113	0.028898	GGAAGAC	ENSMUST00000089561.3|Lzts3|ENSMUSG00000037703.8|leucine zipper, putative tumor suppressor family member 3 	ENSMUST00000110260.1|Lzts3|ENSMUSG00000037703.8|leucine zipper, putative tumor suppressor family member 3
mm10_v2_chr7_+_16401187_16401233	0.0270961	GGAAGAC	ENSMUST00000098789.3|Zc3h4|ENSMUSG00000059273.7|zinc finger CCCH-type containing 4
mm10_v2_chr15_-_78718113_78718113	0.0257353	GGAAGAC	ENSMUST00000088592.4|Elfn2|ENSMUSG00000043460.6|leucine rich repeat and fibronectin type III, extracellular 2
mm10_v2_chr2_+_152226839_152226908	0.0252102	GGAAGAC	ENSMUST00000099224.3|Csnk2a1|ENSMUSG00000074698.4|casein kinase 2, alpha 1 polypeptide 	ENSMUST00000124791.1|Csnk2a1|ENSMUSG00000074698.4|casein kinase 2, alpha 1 polypeptide 	ENSMUST00000133119.1|Csnk2a1|ENSMUSG00000074698.4|casein kinase 2, alpha 1 polypeptide
mm10_v2_chr2_-_146511992_146512015	0.0249947	GGAAGAC	ENSMUST00000109986.2|Ralgapa2|ENSMUSG00000037110.13|Ral GTPase activating protein, alpha subunit 2 (catalytic)
mm10_v2_chr9_-_99140065_99140087	0.0242325	GGAAGAC	ENSMUST00000035037.7|Pik3cb|ENSMUSG00000032462.8|phosphatidylinositol 3-kinase, catalytic, beta polypeptide
mm10_v2_chr7_-_114117761_114117787	0.0216514	GGAAGAC	ENSMUST00000069449.5|Rras2|ENSMUSG00000055723.5|related RAS viral (r-ras) oncogene homolog 2
mm10_v2_chr3_+_68869563_68869589	0.0207579	GGAAGAC	ENSMUST00000054551.2|1110032F04Rik|ENSMUSG00000046999.2|RIKEN cDNA 1110032F04 gene
mm10_v2_chr4_+_49632046_49632110	0.0206364	GGAAGAC	ENSMUST00000156314.1|Rnf20|ENSMUSG00000028309.8|ring finger protein 20 	ENSMUST00000167496.1|Rnf20|ENSMUSG00000028309.8|ring finger protein 20 	ENSMUST00000029989.4|Rnf20|ENSMUSG00000028309.8|ring finger protein 20 	ENSMUST00000146547.1|Rnf20|ENSMUSG00000028309.8|ring finger protein 20
mm10_v2_chr1_+_58393119_58393147	0.0195487	GGAAGAC	ENSMUST00000050552.8|Bzw1|ENSMUSG00000051223.8|basic leucine zipper and W2 domains 1
mm10_v2_chr9_+_57708534_57708608	0.0190734	GGAAGAC	ENSMUST00000043990.7|Edc3|ENSMUSG00000038957.7|enhancer of mRNA decapping 3 homolog (S. cerevisiae) 	ENSMUST00000142807.1|Edc3|ENSMUSG00000038957.7|enhancer of mRNA decapping 3 homolog (S. cerevisiae)
mm10_v2_chr9_-_95511897_95511996	0.0190125	GGAAGAC	ENSMUST00000079659.5|U2surp|ENSMUSG00000032407.7|U2 snRNP-associated SURP domain containing 	ENSMUST00000078374.6|U2surp|ENSMUSG00000032407.7|U2 snRNP-associated SURP domain containing
mm10_v2_chr4_-_126468580_126468653	0.0179644	GGAAGAC	ENSMUST00000097888.3|Ago1|ENSMUSG00000041530.10|argonaute RISC catalytic subunit 1
mm10_v2_chr13_+_81783220_81783307	0.0179588	GGAAGAC	ENSMUST00000022009.8|Cetn3|ENSMUSG00000021537.8|centrin 3
mm10_v2_chr10_-_63927434_63927434	0.0176569	GGAAGAC	ENSMUST00000079279.3|Gm10118|ENSMUSG00000062561.3|predicted gene 10118
mm10_v2_chr4_-_120287349_120287349	0.0167141	GGAAGAC	ENSMUST00000102656.3|Foxo6|ENSMUSG00000052135.8|forkhead box O6
mm10_v2_chr10_+_126978690_126978749	0.0141935	GGAAGAC	ENSMUST00000105256.2|Ctdsp2|ENSMUSG00000078429.2|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
mm10_v2_chr7_-_63938862_63938933	0.0130504	GGAAGAC	ENSMUST00000063694.8|Klf13|ENSMUSG00000052040.9|Kruppel-like factor 13
mm10_v2_chr18_+_23954668_23954704	0.0126693	GGAAGAC	ENSMUST00000060762.4|Zfp397|ENSMUSG00000024276.6|zinc finger protein 397
mm10_v2_chr1_-_182341585_182341625	0.012194	GGAAGAC	ENSMUST00000051431.4|Fbxo28|ENSMUSG00000047539.4|F-box protein 28
mm10_v2_chr15_-_73423180_73423218	0.011772	GGAAGAC	ENSMUST00000110036.2|Ptk2|ENSMUSG00000022607.8|PTK2 protein tyrosine kinase 2 	ENSMUST00000170939.1|Ptk2|ENSMUSG00000022607.8|PTK2 protein tyrosine kinase 2
mm10_v2_chr8_-_71463600_71463680	0.0111512	GGAAGAC	ENSMUST00000008094.8|Abhd8|ENSMUSG00000007950.8|abhydrolase domain containing 8
mm10_v2_chr7_-_127345314_127345400	0.0108802	GGAAGAC	ENSMUST00000060783.5|Zfp768|ENSMUSG00000047371.6|zinc finger protein 768
mm10_v2_chr15_+_96287518_96287604	0.0104062	GGAAGAC	ENSMUST00000134985.2|Arid2|ENSMUSG00000033237.12|AT rich interactive domain 2 (ARID, RFX-like) 	ENSMUST00000096250.4|Arid2|ENSMUSG00000033237.12|AT rich interactive domain 2 (ARID, RFX-like)
mm10_v2_chr11_+_75679259_75679327	0.0101699	GGAAGAC	ENSMUST00000017920.7|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian) 	ENSMUST00000108426.1|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian) 	ENSMUST00000108425.1|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian) 	ENSMUST00000093115.3|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian)
mm10_v2_chr11_+_72689997_72690015	0.0099329	GGAAGAC	ENSMUST00000155998.1|Ankfy1|ENSMUSG00000020790.8|ankyrin repeat and FYVE domain containing 1
mm10_v2_chr16_+_42907563_42907684	0.00947189	GGAAGAC	ENSMUST00000151244.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000114694.2|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr1_-_34843050_34843065	0.00936298	GGAAGAC	ENSMUST00000170092.1|Fam168b|ENSMUSG00000037503.6|family with sequence similarity 168, member B 	ENSMUST00000167518.1|Fam168b|ENSMUSG00000037503.6|family with sequence similarity 168, member B 	ENSMUST00000047534.5|Fam168b|ENSMUSG00000037503.6|family with sequence similarity 168, member B
mm10_v2_chr17_-_30612613_30612663	0.00881305	GGAAGAC	ENSMUST00000167624.1|Glo1|ENSMUSG00000024026.6|glyoxalase 1 	ENSMUST00000024823.6|Glo1|ENSMUSG00000024026.6|glyoxalase 1
mm10_v2_chr1_-_64737735_64737756	0.00812324	GGAAGAC	ENSMUST00000063982.5|Fzd5|ENSMUSG00000045005.8|frizzled homolog 5 (Drosophila) 	ENSMUST00000116133.2|Fzd5|ENSMUSG00000045005.8|frizzled homolog 5 (Drosophila)
mm10_v2_chr13_-_105054895_105054930	0.00806	GGAAGAC	ENSMUST00000063551.5|Rgs7bp|ENSMUSG00000021719.8|regulator of G-protein signalling 7 binding protein
mm10_v2_chr4_-_82505749_82505802	0.00787735	GGAAGAC	ENSMUST00000107245.2|Nfib|ENSMUSG00000008575.11|nuclear factor I/B 	ENSMUST00000107246.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr15_-_48791933_48792063	0.00754851	GGAAGAC	ENSMUST00000160658.1|Csmd3|ENSMUSG00000022311.9|CUB and Sushi multiple domains 3 	ENSMUST00000100670.3|Csmd3|ENSMUSG00000022311.9|CUB and Sushi multiple domains 3 	ENSMUST00000162830.1|Csmd3|ENSMUSG00000022311.9|CUB and Sushi multiple domains 3
mm10_v2_chr2_-_167492826_167492891	0.00753665	GGAAGAC	ENSMUST00000109211.2|Spata2|ENSMUSG00000047030.9|spermatogenesis associated 2 	ENSMUST00000057627.9|Spata2|ENSMUSG00000047030.9|spermatogenesis associated 2
mm10_v2_chr15_-_98004695_98004708	0.00752798	GGAAGAC	ENSMUST00000023123.8|Col2a1|ENSMUSG00000022483.10|collagen, type II, alpha 1
mm10_v2_chr14_-_41013753_41013817	0.00716047	GGAAGAC	ENSMUST00000143143.1|Fam213a|ENSMUSG00000021792.9|family with sequence similarity 213, member A 	ENSMUST00000128236.1|Fam213a|ENSMUSG00000021792.9|family with sequence similarity 213, member A 	ENSMUST00000022317.8|Fam213a|ENSMUSG00000021792.9|family with sequence similarity 213, member A 	ENSMUST00000118466.1|Fam213a|ENSMUSG00000021792.9|family with sequence similarity 213, member A
mm10_v2_chr10_-_81427114_81427187	0.00701645	GGAAGAC	ENSMUST00000078185.7|Nfic|ENSMUSG00000055053.11|nuclear factor I/C 	ENSMUST00000020461.8|Nfic|ENSMUSG00000055053.11|nuclear factor I/C 	ENSMUST00000105321.3|Nfic|ENSMUSG00000055053.11|nuclear factor I/C
mm10_v2_chr11_-_6475992_6476102	0.00698174	GGAAGAC	ENSMUST00000179343.1|Purb|ENSMUSG00000094483.1|purine rich element binding protein B
mm10_v2_chr19_-_12796108_12796146	0.00695449	GGAAGAC	ENSMUST00000038627.8|Zfp91|ENSMUSG00000024695.9|zinc finger protein 91
mm10_v2_chr13_+_45507438_45507515	0.00686412	GGAAGAC	ENSMUST00000000260.6|Gmpr|ENSMUSG00000000253.6|guanosine monophosphate reductase
mm10_v2_chr1_+_36471590_36471620	0.00683903	GGAAGAC	ENSMUST00000153128.1|Cnnm4|ENSMUSG00000037408.9|cyclin M4
mm10_v2_chr6_-_119330668_119330694	0.00676479	GGAAGAC	ENSMUST00000112756.1|Lrtm2|ENSMUSG00000055003.8|leucine-rich repeats and transmembrane domains 2
mm10_v2_chr2_-_33468493_33468572	0.00651368	GGAAGAC	ENSMUST00000113156.1|Zbtb43|ENSMUSG00000026788.7|zinc finger and BTB domain containing 43 	ENSMUST00000028125.5|Zbtb43|ENSMUSG00000026788.7|zinc finger and BTB domain containing 43 	ENSMUST00000126442.1|Zbtb43|ENSMUSG00000026788.7|zinc finger and BTB domain containing 43
mm10_v2_chr7_+_100706702_100706731	0.00641643	GGAAGAC	ENSMUST00000049053.7|Fam168a|ENSMUSG00000029461.9|family with sequence similarity 168, member A
mm10_v2_chr7_-_143740316_143740368	0.00509805	GGAAGAC	ENSMUST00000119499.1|Osbpl5|ENSMUSG00000037606.11|oxysterol binding protein-like 5
mm10_v2_chr2_+_132846638_132846708	0.00453909	GGAAGAC	ENSMUST00000028835.6|Crls1|ENSMUSG00000027357.10|cardiolipin synthase 1 	ENSMUST00000110122.3|Crls1|ENSMUSG00000027357.10|cardiolipin synthase 1
mm10_v2_chr1_+_153652943_153653025	0.00397521	GGAAGAC	ENSMUST00000041776.5|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8
mm10_v2_chr15_+_99702278_99702312	0.00313347	GGAAGAC	ENSMUST00000023759.4|Smarcd1|ENSMUSG00000023018.4|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm10_v2_chr10_-_81025406_81025411	0.00306313	GGAAGAC	ENSMUST00000055125.4|Diras1|ENSMUSG00000043670.4|DIRAS family, GTP-binding RAS-like 1
mm10_v2_chr4_-_56947411_56947447	0.00278209	GGAAGAC	ENSMUST00000107609.3|Tmem245|ENSMUSG00000055296.8|transmembrane protein 245 	ENSMUST00000068792.6|Tmem245|ENSMUSG00000055296.8|transmembrane protein 245
mm10_v2_chr9_+_21616166_21616177	0.00219497	GGAAGAC	ENSMUST00000034707.8|Smarca4|ENSMUSG00000032187.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 	ENSMUST00000098948.3|Smarca4|ENSMUSG00000032187.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm10_v2_chr2_-_160872552_160872622	7.33396e-05	GGAAGAC	ENSMUST00000103111.2|Zhx3|ENSMUSG00000035877.11|zinc fingers and homeoboxes 3
