mm10_v2_chr14_-_55560340_55560406	0.714936	Gli1	ENSMUST00000066106.3|A730061H03Rik|ENSMUSG00000053588.3|RIKEN cDNA A730061H03 gene
mm10_v2_chr2_+_70562007_70562042	0.67786	Gli1	ENSMUST00000094934.4|Gad1|ENSMUSG00000070880.4|glutamate decarboxylase 1
mm10_v2_chr2_-_152830615_152830680	0.525399	Gli1	ENSMUST00000146380.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1 	ENSMUST00000134902.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1 	ENSMUST00000134357.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1 	ENSMUST00000109820.3|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1
mm10_v2_chr2_-_152831112_152831326	0.49934	Gli1	ENSMUST00000128172.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1
mm10_v2_chr6_+_107529717_107529780	0.431254	Gli1	ENSMUST00000049285.8|Lrrn1|ENSMUSG00000034648.8|leucine rich repeat protein 1, neuronal
mm10_v2_chr1_+_195017399_195017431	0.428689	Gli1	ENSMUST00000181273.1|A330023F24Rik|ENSMUSG00000096929.1|RIKEN cDNA A330023F24 gene
mm10_v2_chr7_-_100656953_100657103	0.414143	Gli1	ENSMUST00000107046.1|Plekhb1|ENSMUSG00000030701.10|pleckstrin homology domain containing, family B (evectins) member 1 	ENSMUST00000107045.1|Plekhb1|ENSMUSG00000030701.10|pleckstrin homology domain containing, family B (evectins) member 1 	ENSMUST00000139708.1|Plekhb1|ENSMUSG00000030701.10|pleckstrin homology domain containing, family B (evectins) member 1
mm10_v2_chr8_+_76902277_76902476	0.410288	Gli1	ENSMUST00000109912.1|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2 	ENSMUST00000128862.1|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2 	ENSMUST00000109911.1|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2
mm10_v2_chr7_-_118443549_118443571	0.395677	Gli1	ENSMUST00000081574.4|Syt17|ENSMUSG00000058420.5|synaptotagmin XVII
mm10_v2_chr14_+_55560480_55560533	0.380241	Gli1	ENSMUST00000121622.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11 	ENSMUST00000143431.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11 	ENSMUST00000150481.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11
mm10_v2_chr3_+_92288566_92288566	0.361518	Gli1	ENSMUST00000090872.4|Sprr2a3|ENSMUSG00000074445.2|small proline-rich protein 2A3
mm10_v2_chrX_-_7574120_7574312	0.360538	Gli1	ENSMUST00000045924.7|Ppp1r3f|ENSMUSG00000039556.10|protein phosphatase 1, regulatory (inhibitor) subunit 3F 	ENSMUST00000115742.2|Ppp1r3f|ENSMUSG00000039556.10|protein phosphatase 1, regulatory (inhibitor) subunit 3F 	ENSMUST00000150787.1|Ppp1r3f|ENSMUSG00000039556.10|protein phosphatase 1, regulatory (inhibitor) subunit 3F
mm10_v2_chr5_+_30588078_30588171	0.354249	Gli1	ENSMUST00000066295.2|Kcnk3|ENSMUSG00000049265.6|potassium channel, subfamily K, member 3
mm10_v2_chr14_+_55561060_55561071	0.341177	Gli1	ENSMUST00000117701.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11
mm10_v2_chr7_-_19770509_19770547	0.339307	Gli1	ENSMUST00000003061.7|Bcam|ENSMUSG00000002980.8|basal cell adhesion molecule
mm10_v2_chr8_-_72212837_72212837	0.318872	Gli1	ENSMUST00000098630.3|Cib3|ENSMUSG00000074240.3|calcium and integrin binding family member 3
mm10_v2_chr14_+_55560904_55560974	0.312934	Gli1	ENSMUST00000072530.4|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11 	ENSMUST00000128490.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11
mm10_v2_chr8_+_54954728_54954820	0.31263	Gli1	ENSMUST00000033915.7|Gpm6a|ENSMUSG00000031517.7|glycoprotein m6a
mm10_v2_chr11_+_80300866_80300912	0.307165	Gli1	ENSMUST00000017836.7|Rhbdl3|ENSMUSG00000017692.8|rhomboid, veinlet-like 3 (Drosophila)
mm10_v2_chr17_+_37045980_37046080	0.30406	Gli1	ENSMUST00000174456.1|Gabbr1|ENSMUSG00000024462.11|gamma-aminobutyric acid (GABA) B receptor, 1
mm10_v2_chr4_-_58553184_58553261	0.288659	Gli1	ENSMUST00000145361.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1
mm10_v2_chr7_-_44227421_44227421	0.285156	Gli1	ENSMUST00000072123.4|Gm10109|ENSMUSG00000062073.5|predicted gene 10109
mm10_v2_chrX_+_103321398_103321398	0.265344	Gli1	ENSMUST00000033689.2|Cdx4|ENSMUSG00000031326.2|caudal type homeobox 4
mm10_v2_chrX_+_119927196_119927225	0.251147	Gli1	ENSMUST00000040961.2|Pabpc5|ENSMUSG00000034732.4|poly(A) binding protein, cytoplasmic 5 	ENSMUST00000113366.1|Pabpc5|ENSMUSG00000034732.4|poly(A) binding protein, cytoplasmic 5
mm10_v2_chr9_-_108305941_108305958	0.249114	Gli1	ENSMUST00000044725.7|Tcta|ENSMUSG00000039461.7|T cell leukemia translocation altered gene
mm10_v2_chr6_+_125349699_125349775	0.238293	Gli1	ENSMUST00000032491.8|Tnfrsf1a|ENSMUSG00000030341.11|tumor necrosis factor receptor superfamily, member 1a
mm10_v2_chr8_-_120177420_120177435	0.224398	Gli1	ENSMUST00000135567.2|Fam92b|ENSMUSG00000042269.9|family with sequence similarity 92, member B
mm10_v2_chr2_+_119351222_119351233	0.22428	Gli1	ENSMUST00000028780.3|Chac1|ENSMUSG00000027313.3|ChaC, cation transport regulator 1
mm10_v2_chr4_-_58553311_58553357	0.223151	Gli1	ENSMUST00000107571.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1 	ENSMUST00000055018.4|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1
mm10_v2_chr6_+_30738044_30738059	0.220587	Gli1	ENSMUST00000128398.1|Mest|ENSMUSG00000051855.9|mesoderm specific transcript 	ENSMUST00000163949.2|Mest|ENSMUSG00000051855.9|mesoderm specific transcript 	ENSMUST00000124665.1|Mest|ENSMUSG00000051855.9|mesoderm specific transcript
mm10_v2_chrX_+_101299143_101299201	0.21587	Gli1	ENSMUST00000118111.1|Nlgn3|ENSMUSG00000031302.10|neuroligin 3 	ENSMUST00000130555.1|Nlgn3|ENSMUSG00000031302.10|neuroligin 3 	ENSMUST00000151528.1|Nlgn3|ENSMUSG00000031302.10|neuroligin 3
mm10_v2_chr4_-_58553553_58553898	0.215205	Gli1	ENSMUST00000107575.2|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1 	ENSMUST00000107574.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1 	ENSMUST00000147354.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1
mm10_v2_chr15_-_100584075_100584075	0.213784	Gli1	ENSMUST00000184908.1|POU6F1|ENSMUSG00000098598.1|POU domain, class 6, transcription factor 1 (Pou6f1), mRNA
mm10_v2_chr11_+_93098404_93098437	0.212392	Gli1	ENSMUST00000107859.1|Car10|ENSMUSG00000056158.8|carbonic anhydrase 10 	ENSMUST00000042943.6|Car10|ENSMUSG00000056158.8|carbonic anhydrase 10 	ENSMUST00000107861.1|Car10|ENSMUSG00000056158.8|carbonic anhydrase 10 	ENSMUST00000107858.2|Car10|ENSMUSG00000056158.8|carbonic anhydrase 10
mm10_v2_chr17_-_24209377_24209416	0.211028	Gli1	ENSMUST00000024931.4|Ntn3|ENSMUSG00000079662.1|netrin 3
mm10_v2_chr6_-_52012476_52012551	0.208276	Gli1	ENSMUST00000078214.5|Skap2|ENSMUSG00000059182.5|src family associated phosphoprotein 2
mm10_v2_chr3_-_89402650_89402793	0.203678	Gli1	ENSMUST00000168325.1|Lenep|ENSMUSG00000078173.2|lens epithelial protein 	ENSMUST00000057431.5|Lenep|ENSMUSG00000078173.2|lens epithelial protein
mm10_v2_chr17_+_37045963_37045975	0.202331	Gli1	ENSMUST00000025338.9|Gabbr1|ENSMUSG00000024462.11|gamma-aminobutyric acid (GABA) B receptor, 1
mm10_v2_chr8_-_64733534_64733554	0.200804	Gli1	ENSMUST00000141021.1|Sc4mol|ENSMUSG00000031604.4|sterol-C4-methyl oxidase-like
mm10_v2_chr18_+_37477768_37477835	0.191387	Gli1	ENSMUST00000051442.5|Pcdhb16|ENSMUSG00000047910.5|protocadherin beta 16
mm10_v2_chr3_+_90603767_90603771	0.189043	Gli1	ENSMUST00000001046.5|S100a4|ENSMUSG00000001020.7|S100 calcium binding protein A4 	ENSMUST00000107330.1|S100a4|ENSMUSG00000001020.7|S100 calcium binding protein A4
mm10_v2_chr18_-_70141568_70141622	0.181253	Gli1	ENSMUST00000121693.1|Rab27b|ENSMUSG00000024511.9|RAB27b, member RAS oncogene family
mm10_v2_chr11_-_94704499_94704499	0.178683	Gli1	ENSMUST00000069852.1|Gm11541|ENSMUSG00000056008.1|predicted gene 11541
mm10_v2_chr19_-_6084679_6084693	0.161831	Gli1	ENSMUST00000161548.1|Zfpl1|ENSMUSG00000024792.2|zinc finger like protein 1
mm10_v2_chr2_+_23069210_23069327	0.15925	Gli1	ENSMUST00000155602.1|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5
mm10_v2_chrX_-_59567348_59567472	0.149239	Gli1	ENSMUST00000124402.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr2_+_20737306_20737321	0.142921	Gli1	ENSMUST00000114606.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4 	ENSMUST00000114608.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4
mm10_v2_chr18_+_37355271_37355271	0.141379	Gli1	ENSMUST00000051163.1|Pcdhb8|ENSMUSG00000045876.3|protocadherin beta 8
mm10_v2_chrX_+_101299207_101299218	0.138388	Gli1	ENSMUST00000065858.2|Nlgn3|ENSMUSG00000031302.10|neuroligin 3
mm10_v2_chr15_-_95528228_95528266	0.136499	Gli1	ENSMUST00000075275.2|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr2_-_59948155_59948216	0.135915	Gli1	ENSMUST00000153136.1|Baz2b|ENSMUSG00000026987.10|bromodomain adjacent to zinc finger domain, 2B
mm10_v2_chr11_-_96824008_96824159	0.135763	Gli1	ENSMUST00000142065.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1 	ENSMUST00000167110.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1 	ENSMUST00000169828.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1 	ENSMUST00000126949.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1
mm10_v2_chr2_-_92434027_92434053	0.134901	Gli1	ENSMUST00000111278.1|Cry2|ENSMUSG00000068742.5|cryptochrome 2 (photolyase-like) 	ENSMUST00000090559.5|Cry2|ENSMUSG00000068742.5|cryptochrome 2 (photolyase-like)
mm10_v2_chr11_+_101176041_101176041	0.134056	Gli1	ENSMUST00000103109.3|Cntnap1|ENSMUSG00000017167.6|contactin associated protein-like 1
mm10_v2_chr6_+_37870786_37870882	0.133756	Gli1	ENSMUST00000120428.1|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24 	ENSMUST00000031859.7|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24
mm10_v2_chr9_+_86695542_86695542	0.132033	Gli1	ENSMUST00000150367.2|A330041J22Rik|ENSMUSG00000087466.2|RIKEN cDNA A330041J22 gene
mm10_v2_chr15_+_99392948_99393022	0.129484	Gli1	ENSMUST00000161250.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6 	ENSMUST00000160635.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6 	ENSMUST00000161778.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chrX_+_159303266_159303281	0.123236	Gli1	ENSMUST00000112491.1|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3
mm10_v2_chr15_+_99392882_99392903	0.123221	Gli1	ENSMUST00000023749.8|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr8_-_41016295_41016321	0.123058	Gli1	ENSMUST00000131965.1|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1
mm10_v2_chr5_-_122900267_122900377	0.122933	Gli1	ENSMUST00000031435.7|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chrX_+_94234594_94234604	0.121974	Gli1	ENSMUST00000153900.1|Klhl15|ENSMUSG00000043929.10|kelch-like 15
mm10_v2_chr2_-_104493690_104493753	0.121099	Gli1	ENSMUST00000111124.1|Hipk3|ENSMUSG00000027177.8|homeodomain interacting protein kinase 3
mm10_v2_chr13_+_54575008_54575017	0.119757	Gli1	ENSMUST00000026988.4|Arl10|ENSMUSG00000025870.4|ADP-ribosylation factor-like 10
mm10_v2_chr8_+_45658273_45658298	0.118684	Gli1	ENSMUST00000153798.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr2_+_23069057_23069089	0.11866	Gli1	ENSMUST00000114526.1|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5 	ENSMUST00000114529.2|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5
mm10_v2_chr14_-_54409469_54409477	0.115084	Gli1	ENSMUST00000000984.4|Slc7a7|ENSMUSG00000000958.5|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7
mm10_v2_chr12_+_44328882_44328954	0.113463	Gli1	ENSMUST00000020939.8|Nrcam|ENSMUSG00000020598.9|neuron-glia-CAM-related cell adhesion molecule 	ENSMUST00000110748.2|Nrcam|ENSMUSG00000020598.9|neuron-glia-CAM-related cell adhesion molecule
mm10_v2_chr11_-_83462961_83463071	0.112432	Gli1	ENSMUST00000021020.6|Mmp28|ENSMUSG00000020682.11|matrix metallopeptidase 28 (epilysin) 	ENSMUST00000119346.1|Mmp28|ENSMUSG00000020682.11|matrix metallopeptidase 28 (epilysin) 	ENSMUST00000103209.3|Mmp28|ENSMUSG00000020682.11|matrix metallopeptidase 28 (epilysin) 	ENSMUST00000108137.2|Mmp28|ENSMUSG00000020682.11|matrix metallopeptidase 28 (epilysin)
mm10_v2_chr11_+_97840780_97840780	0.112011	Gli1	ENSMUST00000054783.4|B230217C12Rik|ENSMUSG00000089676.3|RIKEN cDNA B230217C12 gene
mm10_v2_chr11_-_58733223_58733223	0.111088	Gli1	ENSMUST00000075607.2|Olfr317|ENSMUSG00000060030.2|olfactory receptor 317
mm10_v2_chr5_-_122989260_122989306	0.110375	Gli1	ENSMUST00000118027.1|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr2_-_29253001_29253013	0.109792	Gli1	ENSMUST00000071201.4|Ntng2|ENSMUSG00000035513.13|netrin G2
mm10_v2_chr16_-_91011093_91011113	0.107806	Gli1	ENSMUST00000170853.1|Synj1|ENSMUSG00000022973.11|synaptojanin 1 	ENSMUST00000118390.2|Synj1|ENSMUSG00000022973.11|synaptojanin 1
mm10_v2_chr5_-_122989086_122989111	0.107352	Gli1	ENSMUST00000046073.9|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr6_+_17463826_17463829	0.106136	Gli1	ENSMUST00000140070.1|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr2_+_164879358_164879398	0.105	Gli1	ENSMUST00000041643.3|Pcif1|ENSMUSG00000039849.5|PDX1 C-terminal inhibiting factor 1
mm10_v2_chr11_+_62847111_62847132	0.104868	Gli1	ENSMUST00000150989.1|Fbxw10|ENSMUSG00000090173.2|F-box and WD-40 domain protein 10 	ENSMUST00000176577.1|Fbxw10|ENSMUSG00000090173.2|F-box and WD-40 domain protein 10
mm10_v2_chr14_+_19751257_19751292	0.10426	Gli1	ENSMUST00000022340.3|Nid2|ENSMUSG00000021806.3|nidogen 2
mm10_v2_chr9_+_108306205_108306267	0.102918	Gli1	ENSMUST00000007959.8|Rhoa|ENSMUSG00000007815.8|ras homolog gene family, member A
mm10_v2_chr4_+_123233556_123233556	0.102837	Gli1	ENSMUST00000040821.4|Heyl|ENSMUSG00000032744.4|hairy/enhancer-of-split related with YRPW motif-like
mm10_v2_chr9_+_118506226_118506318	0.100754	Gli1	ENSMUST00000084820.4|Golga4|ENSMUSG00000038708.9|golgi autoantigen, golgin subfamily a, 4
mm10_v2_chr17_+_34187545_34187571	0.0996031	Gli1	ENSMUST00000170086.1|Tap1|ENSMUSG00000037321.11|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
mm10_v2_chr7_-_139978709_139978747	0.0990256	Gli1	ENSMUST00000121412.1|6430531B16Rik|ENSMUSG00000073795.4|RIKEN cDNA 6430531B16 gene
mm10_v2_chr2_+_129800451_129800526	0.0987488	Gli1	ENSMUST00000165413.2|Stk35|ENSMUSG00000037885.12|serine/threonine kinase 35 	ENSMUST00000166282.2|Stk35|ENSMUSG00000037885.12|serine/threonine kinase 35
mm10_v2_chr9_+_104063678_104063710	0.0985507	Gli1	ENSMUST00000047799.5|Acad11|ENSMUSG00000090150.2|acyl-Coenzyme A dehydrogenase family, member 11
mm10_v2_chr17_+_56326045_56326097	0.0975718	Gli1	ENSMUST00000139679.1|Kdm4b|ENSMUSG00000024201.6|lysine (K)-specific demethylase 4B 	ENSMUST00000025036.4|Kdm4b|ENSMUSG00000024201.6|lysine (K)-specific demethylase 4B 	ENSMUST00000086835.5|Kdm4b|ENSMUSG00000024201.6|lysine (K)-specific demethylase 4B
mm10_v2_chr4_+_40948401_40948412	0.0968045	Gli1	ENSMUST00000030128.5|Chmp5|ENSMUSG00000028419.5|charged multivesicular body protein 5
mm10_v2_chr8_+_45658731_45658804	0.0940831	Gli1	ENSMUST00000143820.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000132139.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr7_-_6331235_6331290	0.0938721	Gli1	ENSMUST00000127658.1|Zfp583|ENSMUSG00000030443.10|zinc finger protein 583 	ENSMUST00000062765.7|Zfp583|ENSMUSG00000030443.10|zinc finger protein 583
mm10_v2_chr11_+_115420059_115420128	0.0932839	Gli1	ENSMUST00000103035.3|Kctd2|ENSMUSG00000016940.12|potassium channel tetramerisation domain containing 2
mm10_v2_chr7_-_142372342_142372441	0.0929675	Gli1	ENSMUST00000059223.8|Ifitm10|ENSMUSG00000045777.8|interferon induced transmembrane protein 10
mm10_v2_chr4_+_133011506_133011546	0.0923225	Gli1	ENSMUST00000105915.1|Ahdc1|ENSMUSG00000037692.8|AT hook, DNA binding motif, containing 1 	ENSMUST00000105916.1|Ahdc1|ENSMUSG00000037692.8|AT hook, DNA binding motif, containing 1
mm10_v2_chr2_+_106693185_106693278	0.0908673	Gli1	ENSMUST00000111063.1|Mpped2|ENSMUSG00000016386.9|metallophosphoesterase domain containing 2
mm10_v2_chr2_+_181520533_181520563	0.0907659	Gli1	ENSMUST00000108797.1|Dnajc5|ENSMUSG00000000826.10|DnaJ (Hsp40) homolog, subfamily C, member 5
mm10_v2_chr1_+_191906743_191906767	0.0906209	Gli1	ENSMUST00000044954.6|Slc30a1|ENSMUSG00000037434.7|solute carrier family 30 (zinc transporter), member 1
mm10_v2_chr4_+_12140263_12140317	0.0893561	Gli1	ENSMUST00000050069.2|Rbm12b1|ENSMUSG00000046667.8|RNA binding motif protein 12 B1 	ENSMUST00000069128.7|Rbm12b1|ENSMUSG00000046667.8|RNA binding motif protein 12 B1
mm10_v2_chr17_-_57031468_57031538	0.0868375	Gli1	ENSMUST00000007814.8|Khsrp|ENSMUSG00000007670.9|KH-type splicing regulatory protein
mm10_v2_chr4_+_12089373_12089441	0.0857574	Gli1	ENSMUST00000095143.2|Rbm12b2|ENSMUSG00000052137.5|RNA binding motif protein 12 B2 	ENSMUST00000063839.5|Rbm12b2|ENSMUSG00000052137.5|RNA binding motif protein 12 B2
mm10_v2_chr11_+_78245743_78245821	0.0853936	Gli1	ENSMUST00000002133.8|Sdf2|ENSMUSG00000002064.10|stromal cell derived factor 2
mm10_v2_chr4_-_43454600_43454635	0.0838168	Gli1	ENSMUST00000098105.3|Cd72|ENSMUSG00000028459.5|CD72 antigen 	ENSMUST00000098104.3|Cd72|ENSMUSG00000028459.5|CD72 antigen 	ENSMUST00000030179.4|Cd72|ENSMUSG00000028459.5|CD72 antigen
mm10_v2_chr9_+_50752758_50752894	0.0836644	Gli1	ENSMUST00000034562.7|Cryab|ENSMUSG00000032060.9|crystallin, alpha B
mm10_v2_chr11_+_62847062_62847087	0.0811031	Gli1	ENSMUST00000036085.4|Fbxw10|ENSMUSG00000090173.2|F-box and WD-40 domain protein 10
mm10_v2_chr2_+_181520485_181520531	0.080729	Gli1	ENSMUST00000072334.5|Dnajc5|ENSMUSG00000000826.10|DnaJ (Hsp40) homolog, subfamily C, member 5
mm10_v2_chr3_+_116007457_116007540	0.0782301	Gli1	ENSMUST00000029575.5|Extl2|ENSMUSG00000027963.8|exostoses (multiple)-like 2 	ENSMUST00000106501.1|Extl2|ENSMUSG00000027963.8|exostoses (multiple)-like 2
mm10_v2_chr2_+_32646586_32646602	0.078012	Gli1	ENSMUST00000009705.7|Eng|ENSMUSG00000026814.10|endoglin 	ENSMUST00000167841.1|Eng|ENSMUSG00000026814.10|endoglin
mm10_v2_chr6_-_41636389_41636409	0.0774281	Gli1	ENSMUST00000031902.5|Trpv6|ENSMUSG00000029868.8|transient receptor potential cation channel, subfamily V, member 6
mm10_v2_chr13_-_53377355_53377373	0.0767204	Gli1	ENSMUST00000021920.6|Sptlc1|ENSMUSG00000021468.7|serine palmitoyltransferase, long chain base subunit 1
mm10_v2_chr17_+_34187789_34187828	0.0759534	Gli1	ENSMUST00000041633.8|Tap1|ENSMUSG00000037321.11|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
mm10_v2_chr10_-_64090265_64090297	0.0753702	Gli1	ENSMUST00000105439.1|Lrrtm3|ENSMUSG00000042846.8|leucine rich repeat transmembrane neuronal 3
mm10_v2_chr11_+_4135167_4135222	0.0749363	Gli1	ENSMUST00000003677.4|Rnf215|ENSMUSG00000003581.8|ring finger protein 215 	ENSMUST00000145705.1|Rnf215|ENSMUSG00000003581.8|ring finger protein 215
mm10_v2_chr19_-_3575708_3575756	0.0727007	Gli1	ENSMUST00000113997.2|Ppp6r3|ENSMUSG00000024908.8|protein phosphatase 6, regulatory subunit 3 	ENSMUST00000025846.8|Ppp6r3|ENSMUSG00000024908.8|protein phosphatase 6, regulatory subunit 3 	ENSMUST00000172362.1|Ppp6r3|ENSMUSG00000024908.8|protein phosphatase 6, regulatory subunit 3
mm10_v2_chr3_-_116007399_116007411	0.0701428	Gli1	ENSMUST00000067485.3|Slc30a7|ENSMUSG00000054414.3|solute carrier family 30 (zinc transporter), member 7
mm10_v2_chr11_-_61494173_61494296	0.0698277	Gli1	ENSMUST00000101085.2|Mapk7|ENSMUSG00000001034.11|mitogen-activated protein kinase 7 	ENSMUST00000079080.6|Mapk7|ENSMUSG00000001034.11|mitogen-activated protein kinase 7 	ENSMUST00000108714.1|Mapk7|ENSMUSG00000001034.11|mitogen-activated protein kinase 7
mm10_v2_chr13_+_44729535_44729697	0.0674795	Gli1	ENSMUST00000174068.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chr11_+_115420138_115420182	0.0653289	Gli1	ENSMUST00000106533.1|Kctd2|ENSMUSG00000016940.12|potassium channel tetramerisation domain containing 2 	ENSMUST00000123345.1|Kctd2|ENSMUSG00000016940.12|potassium channel tetramerisation domain containing 2
mm10_v2_chr4_-_43454563_43454576	0.0613571	Gli1	ENSMUST00000107926.1|Cd72|ENSMUSG00000028459.5|CD72 antigen
mm10_v2_chr1_-_153900198_153900210	0.0585107	Gli1	ENSMUST00000123490.1|5830403L16Rik|ENSMUSG00000045968.6|RIKEN cDNA 5830403L16 gene
mm10_v2_chr8_+_45658666_45658728	0.0579054	Gli1	ENSMUST00000134675.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000139869.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000126067.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr16_-_91011029_91011069	0.0574708	Gli1	ENSMUST00000130813.1|Synj1|ENSMUSG00000022973.11|synaptojanin 1
mm10_v2_chr8_-_25038875_25038962	0.057273	Gli1	ENSMUST00000084031.4|Htra4|ENSMUSG00000037406.6|HtrA serine peptidase 4
mm10_v2_chr7_+_80186835_80186904	0.0572568	Gli1	ENSMUST00000107383.1|Sema4b|ENSMUSG00000030539.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 	ENSMUST00000032754.7|Sema4b|ENSMUSG00000030539.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm10_v2_chr17_+_86963279_86963303	0.0568511	Gli1	ENSMUST00000139344.1|Rhoq|ENSMUSG00000024143.8|ras homolog gene family, member Q
mm10_v2_chr1_-_133801031_133801041	0.0565648	Gli1	ENSMUST00000143567.1|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4
mm10_v2_chrX_-_59568068_59568094	0.0560722	Gli1	ENSMUST00000119833.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13 	ENSMUST00000131319.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr8_-_41016749_41016769	0.0558639	Gli1	ENSMUST00000117735.1|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1
mm10_v2_chr18_-_10610124_10610144	0.0555338	Gli1	ENSMUST00000097670.3|Esco1|ENSMUSG00000024293.9|establishment of cohesion 1 homolog 1 (S. cerevisiae)
mm10_v2_chr2_+_32535315_32535359	0.0546869	Gli1	ENSMUST00000133512.1|Fam102a|ENSMUSG00000039157.6|family with sequence similarity 102, member A 	ENSMUST00000048375.5|Fam102a|ENSMUSG00000039157.6|family with sequence similarity 102, member A
mm10_v2_chr4_-_43454582_43454587	0.0544508	Gli1	ENSMUST00000107925.1|Cd72|ENSMUSG00000028459.5|CD72 antigen
mm10_v2_chr4_-_155863362_155863362	0.0536215	Gli1	ENSMUST00000030949.3|Tas1r3|ENSMUSG00000029072.3|taste receptor, type 1, member 3
mm10_v2_chr18_-_10610048_10610116	0.0525005	Gli1	ENSMUST00000115864.1|Esco1|ENSMUSG00000024293.9|establishment of cohesion 1 homolog 1 (S. cerevisiae)
mm10_v2_chr6_-_113531575_113531667	0.0522447	Gli1	ENSMUST00000032425.5|Emc3|ENSMUSG00000030286.5|ER membrane protein complex subunit 3
mm10_v2_chr8_-_41041828_41041866	0.0520519	Gli1	ENSMUST00000051379.7|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1
mm10_v2_chr1_-_64121456_64121491	0.0518613	Gli1	ENSMUST00000142009.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous) 	ENSMUST00000114086.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous)
mm10_v2_chr11_+_35769462_35769484	0.0515895	Gli1	ENSMUST00000018990.7|Pank3|ENSMUSG00000018846.8|pantothenate kinase 3
mm10_v2_chr4_+_74251928_74251990	0.0498274	Gli1	ENSMUST00000030102.5|Kdm4c|ENSMUSG00000028397.7|lysine (K)-specific demethylase 4C
mm10_v2_chr2_-_46442681_46442713	0.0476071	Gli1	ENSMUST00000123911.1|Gm13470|ENSMUSG00000086644.1|predicted gene 13470
mm10_v2_chr13_-_9764943_9764994	0.0468481	Gli1	ENSMUST00000110634.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr10_+_93488766_93488774	0.0463516	Gli1	ENSMUST00000129421.1|Hal|ENSMUSG00000020017.8|histidine ammonia lyase
mm10_v2_chr18_-_10610346_10610363	0.0440666	Gli1	ENSMUST00000025142.5|Esco1|ENSMUSG00000024293.9|establishment of cohesion 1 homolog 1 (S. cerevisiae)
mm10_v2_chr16_-_90284412_90284498	0.0439883	Gli1	ENSMUST00000039280.7|Scaf4|ENSMUSG00000022983.9|SR-related CTD-associated factor 4
mm10_v2_chr8_-_120177440_120177478	0.0437204	Gli1	ENSMUST00000048786.6|Fam92b|ENSMUSG00000042269.9|family with sequence similarity 92, member B
mm10_v2_chr1_-_125912160_125912214	0.0436217	Gli1	ENSMUST00000159417.1|Lypd1|ENSMUSG00000026344.3|Ly6/Plaur domain containing 1
mm10_v2_chr7_+_5020561_5020602	0.0435688	Gli1	ENSMUST00000085427.3|Zfp865|ENSMUSG00000074405.5|zinc finger protein 865
mm10_v2_chr13_-_58385190_58385242	0.0396808	Gli1	ENSMUST00000022032.5|2210016F16Rik|ENSMUSG00000021550.5|RIKEN cDNA 2210016F16 gene
mm10_v2_chr11_+_85311232_85311286	0.0396056	Gli1	ENSMUST00000020835.9|Ppm1d|ENSMUSG00000020525.11|protein phosphatase 1D magnesium-dependent, delta isoform
mm10_v2_chr4_-_147848358_147848425	0.0386047	Gli1	ENSMUST00000105718.1|Zfp933|ENSMUSG00000059423.7|zinc finger protein 933 	ENSMUST00000135798.1|Zfp933|ENSMUSG00000059423.7|zinc finger protein 933
mm10_v2_chr11_+_115462464_115462506	0.0358834	Gli1	ENSMUST00000106532.3|Slc16a5|ENSMUSG00000045775.9|solute carrier family 16 (monocarboxylic acid transporters), member 5 	ENSMUST00000092445.5|Slc16a5|ENSMUSG00000045775.9|solute carrier family 16 (monocarboxylic acid transporters), member 5 	ENSMUST00000153466.1|Slc16a5|ENSMUSG00000045775.9|solute carrier family 16 (monocarboxylic acid transporters), member 5
mm10_v2_chr15_-_100669512_100669529	0.0356757	Gli1	ENSMUST00000182574.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2 	ENSMUST00000182775.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2
mm10_v2_chr6_+_17463927_17464071	0.0356591	Gli1	ENSMUST00000115442.1|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr7_+_73391160_73391296	0.0348446	Gli1	ENSMUST00000128471.1|Rgma|ENSMUSG00000070509.9|RGM domain family, member A
mm10_v2_chr4_+_118428078_118428194	0.0343274	Gli1	ENSMUST00000006557.6|Elovl1|ENSMUSG00000006390.9|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1 	ENSMUST00000167636.1|Elovl1|ENSMUSG00000006390.9|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1 	ENSMUST00000102673.4|Elovl1|ENSMUSG00000006390.9|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1
mm10_v2_chr2_-_151973840_151973966	0.0338657	Gli1	ENSMUST00000109865.1|Fam110a|ENSMUSG00000027459.10|family with sequence similarity 110, member A 	ENSMUST00000109864.1|Fam110a|ENSMUSG00000027459.10|family with sequence similarity 110, member A
mm10_v2_chr11_+_72999069_72999103	0.0314441	Gli1	ENSMUST00000021141.7|P2rx1|ENSMUSG00000020787.8|purinergic receptor P2X, ligand-gated ion channel, 1
mm10_v2_chr11_+_73240310_73240310	0.0296408	Gli1	ENSMUST00000138853.1|Trpv1|ENSMUSG00000005952.9|transient receptor potential cation channel, subfamily V, member 1
mm10_v2_chr13_+_54575020_54575093	0.0293458	Gli1	ENSMUST00000156024.1|Arl10|ENSMUSG00000025870.4|ADP-ribosylation factor-like 10
mm10_v2_chr2_+_174330006_174330126	0.0286517	Gli1	ENSMUST00000109085.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus 	ENSMUST00000109087.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus 	ENSMUST00000109084.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm10_v2_chr1_-_192834719_192834719	0.0285681	Gli1	ENSMUST00000057543.2|A730013G03Rik|ENSMUSG00000047384.2|RIKEN cDNA A730013G03 gene
mm10_v2_chr6_+_17463749_17463809	0.0285358	Gli1	ENSMUST00000115443.1|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr11_+_70000578_70000624	0.0265994	Gli1	ENSMUST00000019362.8|Dvl2|ENSMUSG00000020888.10|dishevelled 2, dsh homolog (Drosophila)
mm10_v2_chr19_-_5085483_5085531	0.0260741	Gli1	ENSMUST00000140389.1|Tmem151a|ENSMUSG00000061451.7|transmembrane protein 151A 	ENSMUST00000151413.1|Tmem151a|ENSMUSG00000061451.7|transmembrane protein 151A 	ENSMUST00000077066.7|Tmem151a|ENSMUSG00000061451.7|transmembrane protein 151A
mm10_v2_chr6_-_40544977_40544977	0.0260209	Gli1	ENSMUST00000089490.2|Olfr461|ENSMUSG00000068259.2|olfactory receptor 461
mm10_v2_chr12_+_84316830_84316865	0.0260157	Gli1	ENSMUST00000045931.10|Zfp410|ENSMUSG00000042472.10|zinc finger protein 410
mm10_v2_chr8_-_105966038_105966120	0.0248684	Gli1	ENSMUST00000116429.2|Slc12a4|ENSMUSG00000017765.10|solute carrier family 12, member 4 	ENSMUST00000034370.9|Slc12a4|ENSMUSG00000017765.10|solute carrier family 12, member 4
mm10_v2_chrX_+_155262443_155262481	0.0248602	Gli1	ENSMUST00000026324.9|Acot9|ENSMUSG00000025287.9|acyl-CoA thioesterase 9
mm10_v2_chr4_+_114821722_114821722	0.0248583	Gli1	ENSMUST00000137570.1|Gm12830|ENSMUSG00000055198.3|predicted gene 12830
mm10_v2_chr2_+_120629113_120629224	0.0245349	Gli1	ENSMUST00000150912.1|Stard9|ENSMUSG00000033705.10|START domain containing 9 	ENSMUST00000180041.1|Stard9|ENSMUSG00000033705.10|START domain containing 9
mm10_v2_chr4_+_144892813_144892835	0.0243764	Gli1	ENSMUST00000105744.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3 	ENSMUST00000171001.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr11_-_42000284_42000356	0.0236216	Gli1	ENSMUST00000109292.2|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 	ENSMUST00000109290.1|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm10_v2_chr1_+_153900572_153900606	0.0231882	Gli1	ENSMUST00000139476.1|Glul|ENSMUSG00000026473.9|glutamate-ammonia ligase (glutamine synthetase)
mm10_v2_chr5_-_32746317_32746411	0.021914	Gli1	ENSMUST00000135248.1|Pisd|ENSMUSG00000023452.12|phosphatidylserine decarboxylase
mm10_v2_chr10_+_69534208_69534222	0.0207946	Gli1	ENSMUST00000182439.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092434.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092432.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092431.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000054167.8|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000047061.6|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr1_+_152954966_152955101	0.0207067	Gli1	ENSMUST00000043313.8|Nmnat2|ENSMUSG00000042751.8|nicotinamide nucleotide adenylyltransferase 2
mm10_v2_chr2_-_148045891_148045948	0.0199576	Gli1	ENSMUST00000109964.1|Foxa2|ENSMUSG00000037025.5|forkhead box A2
mm10_v2_chr1_-_75232093_75232093	0.019948	Gli1	ENSMUST00000180101.1|A630095N17Rik|ENSMUSG00000096094.1|RIKEN cDNA A630095N17 gene
mm10_v2_chr11_-_69544556_69544556	0.0196615	Gli1	ENSMUST00000035539.5|Dnah2|ENSMUSG00000005237.7|dynein, axonemal, heavy chain 2
mm10_v2_chr11_-_100354040_100354143	0.0194415	Gli1	ENSMUST00000173630.1|Hap1|ENSMUSG00000006930.9|huntingtin-associated protein 1
mm10_v2_chr5_-_123721007_123721062	0.0192183	Gli1	ENSMUST00000031376.7|Zcchc8|ENSMUSG00000029427.7|zinc finger, CCHC domain containing 8
mm10_v2_chr11_+_60479915_60479915	0.0184551	Gli1	ENSMUST00000126522.1|Myo15|ENSMUSG00000042678.10|myosin XV
mm10_v2_chr10_+_69533803_69533848	0.0167682	Gli1	ENSMUST00000182155.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000183169.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000183148.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr14_+_60378242_60378292	0.0161879	Gli1	ENSMUST00000022561.6|Amer2|ENSMUSG00000021986.7|APC membrane recruitment 2
mm10_v2_chr10_+_79777261_79777280	0.0158123	Gli1	ENSMUST00000020575.4|Fstl3|ENSMUSG00000020325.10|follistatin-like 3
mm10_v2_chr19_+_55316313_55316367	0.0152696	Gli1	ENSMUST00000095950.2|Vti1a|ENSMUSG00000024983.9|vesicle transport through interaction with t-SNAREs 1A
mm10_v2_chr2_-_104494400_104494463	0.0146403	Gli1	ENSMUST00000028600.7|Hipk3|ENSMUSG00000027177.8|homeodomain interacting protein kinase 3
mm10_v2_chr2_+_105127200_105127222	0.0144814	Gli1	ENSMUST00000139585.1|Wt1|ENSMUSG00000016458.7|Wilms tumor 1 homolog
mm10_v2_chr10_-_99126321_99126321	0.0138706	Gli1	ENSMUST00000060761.5|Phxr2|ENSMUSG00000055108.5|per-hexamer repeat gene 2
mm10_v2_chr17_+_25727726_25727797	0.0130512	Gli1	ENSMUST00000047273.1|Rpusd1|ENSMUSG00000041199.2|RNA pseudouridylate synthase domain containing 1
mm10_v2_chr12_-_103338314_103338399	0.0112854	Gli1	ENSMUST00000149431.1|Asb2|ENSMUSG00000021200.8|ankyrin repeat and SOCS box-containing 2
mm10_v2_chr2_-_121456693_121456781	0.0103071	Gli1	ENSMUST00000110613.2|Serinc4|ENSMUSG00000046110.9|serine incorporator 4 	ENSMUST00000056312.3|Serinc4|ENSMUSG00000046110.9|serine incorporator 4
mm10_v2_chr11_+_77763246_77763339	0.00985362	Gli1	ENSMUST00000108375.2|Myo18a|ENSMUSG00000000631.13|myosin XVIIIA
mm10_v2_chr16_-_56024628_56024668	0.00966686	Gli1	ENSMUST00000119981.1|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein 	ENSMUST00000096021.3|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein
mm10_v2_chr9_-_82975475_82975493	0.0090222	Gli1	ENSMUST00000034787.5|Phip|ENSMUSG00000032253.7|pleckstrin homology domain interacting protein
mm10_v2_chr15_-_78544345_78544345	0.00691469	Gli1	ENSMUST00000053239.2|Sstr3|ENSMUSG00000044933.2|somatostatin receptor 3
mm10_v2_chr11_-_42000532_42000592	0.00638197	Gli1	ENSMUST00000070735.3|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm10_v2_chr6_-_28830345_28830345	0.00477642	Gli1	ENSMUST00000171353.1|Lrrc4|ENSMUSG00000049939.5|leucine rich repeat containing 4
mm10_v2_chr11_+_100415722_100415766	0.000572513	Gli1	ENSMUST00000107400.2|Fkbp10|ENSMUSG00000001555.4|FK506 binding protein 10
