mm10_v2_chr6_+_49822710_49822727	0.305076	Hoxa9_Hoxb9	ENSMUST00000031843.6|Npy|ENSMUSG00000029819.6|neuropeptide Y
mm10_v2_chr1_+_107511489_107511502	0.302525	Hoxa9_Hoxb9	ENSMUST00000064916.2|Serpinb2|ENSMUSG00000062345.4|serine (or cysteine) peptidase inhibitor, clade B, member 2
mm10_v2_chr1_+_107511416_107511431	0.295712	Hoxa9_Hoxb9	ENSMUST00000009356.4|Serpinb2|ENSMUSG00000062345.4|serine (or cysteine) peptidase inhibitor, clade B, member 2
mm10_v2_chr3_+_138313279_138313293	0.253254	Hoxa9_Hoxb9	ENSMUST00000013455.6|Adh6a|ENSMUSG00000053054.7|alcohol dehydrogenase 6A (class V) 	ENSMUST00000106247.1|Adh6a|ENSMUSG00000053054.7|alcohol dehydrogenase 6A (class V)
mm10_v2_chr4_-_49549523_49549546	0.237679	Hoxa9_Hoxb9	ENSMUST00000029987.9|Aldob|ENSMUSG00000028307.9|aldolase B, fructose-bisphosphate
mm10_v2_chr1_+_88211956_88211985	0.210123	Hoxa9_Hoxb9	ENSMUST00000073049.6|Ugt1a1|ENSMUSG00000089960.1|UDP glucuronosyltransferase 1 family, polypeptide A1
mm10_v2_chr7_-_101870683_101870707	0.204638	Hoxa9_Hoxb9	ENSMUST00000106986.2|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult) 	ENSMUST00000106985.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult)
mm10_v2_chr7_-_101870778_101870788	0.174711	Hoxa9_Hoxb9	ENSMUST00000001882.4|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult) 	ENSMUST00000126204.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult) 	ENSMUST00000155311.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult) 	ENSMUST00000106983.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult) 	ENSMUST00000123630.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult)
mm10_v2_chr2_+_125136692_125136769	0.169426	Hoxa9_Hoxb9	ENSMUST00000099452.2|Ctxn2|ENSMUSG00000074872.2|cortexin 2
mm10_v2_chr17_-_36190121_36190287	0.167798	Hoxa9_Hoxb9	ENSMUST00000097329.3|H2-T3|ENSMUSG00000054128.10|histocompatibility 2, T region locus 3 	ENSMUST00000025312.6|H2-T3|ENSMUSG00000054128.10|histocompatibility 2, T region locus 3 	ENSMUST00000102675.3|H2-T3|ENSMUSG00000054128.10|histocompatibility 2, T region locus 3
mm10_v2_chr7_-_101864093_101864156	0.167513	Hoxa9_Hoxb9	ENSMUST00000106981.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult)
mm10_v2_chr3_+_98280427_98280444	0.129064	Hoxa9_Hoxb9	ENSMUST00000090746.2|Hmgcs2|ENSMUSG00000027875.6|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2 	ENSMUST00000120541.1|Hmgcs2|ENSMUSG00000027875.6|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2
mm10_v2_chr7_-_101870711_101870756	0.128665	Hoxa9_Hoxb9	ENSMUST00000151706.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult)
mm10_v2_chr7_+_43690418_43690418	0.116667	Hoxa9_Hoxb9	ENSMUST00000056329.6|Klk14|ENSMUSG00000044737.6|kallikrein related-peptidase 14
mm10_v2_chr15_-_79062866_79062941	0.112284	Hoxa9_Hoxb9	ENSMUST00000151889.1|Ankrd54|ENSMUSG00000033055.4|ankyrin repeat domain 54 	ENSMUST00000040676.4|Ankrd54|ENSMUSG00000033055.4|ankyrin repeat domain 54
mm10_v2_chr2_-_80447625_80447625	0.111975	Hoxa9_Hoxb9	ENSMUST00000028389.3|Frzb|ENSMUSG00000027004.3|frizzled-related protein
mm10_v2_chr3_-_113574242_113574272	0.1118	Hoxa9_Hoxb9	ENSMUST00000142505.2|Amy1|ENSMUSG00000074264.6|amylase 1, salivary
mm10_v2_chr11_-_109298066_109298079	0.103081	Hoxa9_Hoxb9	ENSMUST00000106706.1|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr6_+_30610984_30611026	0.102206	Hoxa9_Hoxb9	ENSMUST00000062758.4|Cpa5|ENSMUSG00000029788.7|carboxypeptidase A5
mm10_v2_chr6_-_24168083_24168097	0.0916288	Hoxa9_Hoxb9	ENSMUST00000031713.8|Slc13a1|ENSMUSG00000029700.11|solute carrier family 13 (sodium/sulfate symporters), member 1
mm10_v2_chr6_+_30611029_30611051	0.0890718	Hoxa9_Hoxb9	ENSMUST00000115138.1|Cpa5|ENSMUSG00000029788.7|carboxypeptidase A5
mm10_v2_chr17_-_91092715_91092822	0.0871408	Hoxa9_Hoxb9	ENSMUST00000160800.2|Nrxn1|ENSMUSG00000024109.12|neurexin I 	ENSMUST00000159778.1|Nrxn1|ENSMUSG00000024109.12|neurexin I 	ENSMUST00000160844.3|Nrxn1|ENSMUSG00000024109.12|neurexin I
mm10_v2_chr18_+_37655891_37655915	0.0840027	Hoxa9_Hoxb9	ENSMUST00000097608.2|3222401L13Rik|ENSMUSG00000073590.2|RIKEN cDNA 3222401L13 gene
mm10_v2_chr5_+_145204523_145204668	0.0801551	Hoxa9_Hoxb9	ENSMUST00000085671.3|Zkscan5|ENSMUSG00000055991.9|zinc finger with KRAB and SCAN domains 5 	ENSMUST00000031601.7|Zkscan5|ENSMUSG00000055991.9|zinc finger with KRAB and SCAN domains 5
mm10_v2_chr11_-_109298090_109298118	0.0791882	Hoxa9_Hoxb9	ENSMUST00000106704.2|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr2_+_28205648_28205672	0.0782411	Hoxa9_Hoxb9	ENSMUST00000102879.3|Olfm1|ENSMUSG00000026833.12|olfactomedin 1 	ENSMUST00000028177.4|Olfm1|ENSMUSG00000026833.12|olfactomedin 1
mm10_v2_chr11_-_79504078_79504089	0.0769419	Hoxa9_Hoxb9	ENSMUST00000164465.2|Omg|ENSMUSG00000049612.10|oligodendrocyte myelin glycoprotein
mm10_v2_chr2_+_58755177_58755195	0.0767562	Hoxa9_Hoxb9	ENSMUST00000102755.3|Upp2|ENSMUSG00000026839.10|uridine phosphorylase 2
mm10_v2_chr3_+_138065052_138065078	0.0762027	Hoxa9_Hoxb9	ENSMUST00000163080.2|1110002E22Rik|ENSMUSG00000090066.2|RIKEN cDNA 1110002E22 gene
mm10_v2_chr14_-_47189406_47189419	0.0735629	Hoxa9_Hoxb9	ENSMUST00000089959.6|Gch1|ENSMUSG00000037580.9|GTP cyclohydrolase 1
mm10_v2_chr12_+_112620030_112620056	0.0728372	Hoxa9_Hoxb9	ENSMUST00000180015.1|Adssl1|ENSMUSG00000011148.7|adenylosuccinate synthetase like 1 	ENSMUST00000021726.6|Adssl1|ENSMUSG00000011148.7|adenylosuccinate synthetase like 1
mm10_v2_chr16_+_92612755_92612814	0.0710688	Hoxa9_Hoxb9	ENSMUST00000180989.1|Gm26626|ENSMUSG00000097139.1|predicted gene, 26626
mm10_v2_chr2_+_152105722_152105739	0.0708358	Hoxa9_Hoxb9	ENSMUST00000099225.2|Srxn1|ENSMUSG00000032802.7|sulfiredoxin 1 homolog (S. cerevisiae)
mm10_v2_chr16_-_52454074_52454074	0.0693136	Hoxa9_Hoxb9	ENSMUST00000023312.7|Alcam|ENSMUSG00000022636.7|activated leukocyte cell adhesion molecule
mm10_v2_chr17_-_34862473_34862535	0.0684595	Hoxa9_Hoxb9	ENSMUST00000025229.4|Cfb|ENSMUSG00000090231.4|complement factor B 	ENSMUST00000176203.2|Cfb|ENSMUSG00000090231.4|complement factor B 	ENSMUST00000128767.1|Cfb|ENSMUSG00000090231.4|complement factor B
mm10_v2_chr6_-_139501907_139501918	0.0643292	Hoxa9_Hoxb9	ENSMUST00000170650.1|Rergl|ENSMUSG00000092164.1|RERG/RAS-like
mm10_v2_chrX_+_159840463_159840481	0.0637958	Hoxa9_Hoxb9	ENSMUST00000112451.1|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1 	ENSMUST00000112453.2|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1
mm10_v2_chr5_-_139814231_139814283	0.0611963	Hoxa9_Hoxb9	ENSMUST00000044002.4|Tmem184a|ENSMUSG00000036687.7|transmembrane protein 184a
mm10_v2_chr9_+_75311395_75311395	0.0608323	Hoxa9_Hoxb9	ENSMUST00000076889.6|Gnb5|ENSMUSG00000032192.8|guanine nucleotide binding protein (G protein), beta 5
mm10_v2_chr7_-_45870928_45870986	0.0589113	Hoxa9_Hoxb9	ENSMUST00000146672.1|Grin2d|ENSMUSG00000002771.10|glutamate receptor, ionotropic, NMDA2D (epsilon 4)
mm10_v2_chr9_+_43310763_43310806	0.0584927	Hoxa9_Hoxb9	ENSMUST00000034511.5|Trim29|ENSMUSG00000032013.5|tripartite motif-containing 29
mm10_v2_chr19_-_50678642_50678702	0.0548538	Hoxa9_Hoxb9	ENSMUST00000072685.6|Sorcs1|ENSMUSG00000043531.9|VPS10 domain receptor protein SORCS 1 	ENSMUST00000164039.2|Sorcs1|ENSMUSG00000043531.9|VPS10 domain receptor protein SORCS 1
mm10_v2_chr10_+_17796256_17796339	0.0547762	Hoxa9_Hoxb9	ENSMUST00000037964.6|Txlnb|ENSMUSG00000039891.6|taxilin beta
mm10_v2_chr9_-_101198999_101199080	0.0536178	Hoxa9_Hoxb9	ENSMUST00000066773.7|Ppp2r3a|ENSMUSG00000043154.9|protein phosphatase 2, regulatory subunit B'', alpha
mm10_v2_chr3_+_118562129_118562156	0.0520805	Hoxa9_Hoxb9	ENSMUST00000039177.7|Dpyd|ENSMUSG00000033308.10|dihydropyrimidine dehydrogenase
mm10_v2_chr7_+_110768169_110768206	0.0515472	Hoxa9_Hoxb9	ENSMUST00000170374.1|Ampd3|ENSMUSG00000005686.10|adenosine monophosphate deaminase 3
mm10_v2_chr1_-_75232093_75232093	0.0514132	Hoxa9_Hoxb9	ENSMUST00000180101.1|A630095N17Rik|ENSMUSG00000096094.1|RIKEN cDNA A630095N17 gene
mm10_v2_chr1_+_194619815_194619833	0.0497733	Hoxa9_Hoxb9	ENSMUST00000027952.5|Plxna2|ENSMUSG00000026640.6|plexin A2
mm10_v2_chr19_-_7341792_7341829	0.0485578	Hoxa9_Hoxb9	ENSMUST00000164205.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2 	ENSMUST00000165286.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2 	ENSMUST00000168324.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2 	ENSMUST00000032557.8|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2
mm10_v2_chr15_+_81936753_81936839	0.0479947	Hoxa9_Hoxb9	ENSMUST00000038757.7|Csdc2|ENSMUSG00000042109.7|cold shock domain containing C2, RNA binding
mm10_v2_chr13_-_91388079_91388090	0.0476783	Hoxa9_Hoxb9	ENSMUST00000181054.1|A830009L08Rik|ENSMUSG00000097182.1|RIKEN cDNA A830009L08 gene
mm10_v2_chr13_-_23914998_23915011	0.0471838	Hoxa9_Hoxb9	ENSMUST00000021769.8|Slc17a4|ENSMUSG00000021336.10|solute carrier family 17 (sodium phosphate), member 4 	ENSMUST00000110407.2|Slc17a4|ENSMUSG00000021336.10|solute carrier family 17 (sodium phosphate), member 4
mm10_v2_chr8_+_4134733_4134733	0.0454037	Hoxa9_Hoxb9	ENSMUST00000130372.1|Cd209g|ENSMUSG00000079168.3|CD209g antigen
mm10_v2_chr5_+_137787769_137787807	0.0441596	Hoxa9_Hoxb9	ENSMUST00000035852.7|Zcwpw1|ENSMUSG00000037108.7|zinc finger, CW type with PWWP domain 1
mm10_v2_chr11_-_99244058_99244136	0.0438827	Hoxa9_Hoxb9	ENSMUST00000103132.3|Krt222|ENSMUSG00000035849.8|keratin 222 	ENSMUST00000038214.6|Krt222|ENSMUSG00000035849.8|keratin 222
mm10_v2_chr19_-_57197435_57197460	0.0422685	Hoxa9_Hoxb9	ENSMUST00000111550.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr4_+_145585166_145585211	0.0422098	Hoxa9_Hoxb9	ENSMUST00000105739.1|Gm13212|ENSMUSG00000078502.4|predicted gene 13212 	ENSMUST00000119718.1|Gm13212|ENSMUSG00000078502.4|predicted gene 13212
mm10_v2_chr9_+_45055166_45055195	0.0398608	Hoxa9_Hoxb9	ENSMUST00000114664.1|Mpzl3|ENSMUSG00000070305.4|myelin protein zero-like 3 	ENSMUST00000093856.3|Mpzl3|ENSMUSG00000070305.4|myelin protein zero-like 3
mm10_v2_chr17_-_34862122_34862238	0.0392313	Hoxa9_Hoxb9	ENSMUST00000154526.1|Cfb|ENSMUSG00000090231.4|complement factor B
mm10_v2_chr4_+_144893127_144893151	0.0392027	Hoxa9_Hoxb9	ENSMUST00000142808.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr14_+_20674311_20674371	0.0389071	Hoxa9_Hoxb9	ENSMUST00000048657.8|Sec24c|ENSMUSG00000039367.9|Sec24 related gene family, member C (S. cerevisiae)
mm10_v2_chr7_+_30231884_30231948	0.03844	Hoxa9_Hoxb9	ENSMUST00000019882.9|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I
mm10_v2_chr2_-_181599128_181599235	0.0369692	Hoxa9_Hoxb9	ENSMUST00000060173.8|Samd10|ENSMUSG00000038605.11|sterile alpha motif domain containing 10
mm10_v2_chr7_-_45062393_45062436	0.0363007	Hoxa9_Hoxb9	ENSMUST00000129101.1|Prrg2|ENSMUSG00000007837.4|proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
mm10_v2_chr7_+_56050135_56050217	0.0359978	Hoxa9_Hoxb9	ENSMUST00000076226.6|Herc2|ENSMUSG00000030451.9|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2
mm10_v2_chr17_-_15826521_15826590	0.0341415	Hoxa9_Hoxb9	ENSMUST00000170578.1|Rgmb|ENSMUSG00000048027.7|RGM domain family, member B
mm10_v2_chr1_-_153844130_153844158	0.0341027	Hoxa9_Hoxb9	ENSMUST00000124558.3|Rgsl1|ENSMUSG00000042641.12|regulator of G-protein signaling like 1
mm10_v2_chr2_-_58052832_58052870	0.0336723	Hoxa9_Hoxb9	ENSMUST00000090940.5|Ermn|ENSMUSG00000026830.9|ermin, ERM-like protein
mm10_v2_chr17_-_6621267_6621267	0.0313558	Hoxa9_Hoxb9	ENSMUST00000115772.3|Tmem181c-ps|ENSMUSG00000093880.1|transmembrane protein 181C, pseudogene
mm10_v2_chr7_-_127449109_127449166	0.0308113	Hoxa9_Hoxb9	ENSMUST00000053392.4|Zfp689|ENSMUSG00000048921.5|zinc finger protein 689
mm10_v2_chr19_-_57197556_57197631	0.0303083	Hoxa9_Hoxb9	ENSMUST00000099294.2|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr1_+_109993982_109993982	0.0293276	Hoxa9_Hoxb9	ENSMUST00000027542.6|Cdh7|ENSMUSG00000026312.11|cadherin 7, type 2
mm10_v2_chr15_+_81936911_81936982	0.0292707	Hoxa9_Hoxb9	ENSMUST00000135663.1|Csdc2|ENSMUSG00000042109.7|cold shock domain containing C2, RNA binding
mm10_v2_chr2_+_22622183_22622205	0.028219	Hoxa9_Hoxb9	ENSMUST00000028123.3|Gad2|ENSMUSG00000026787.3|glutamic acid decarboxylase 2
mm10_v2_chr10_-_116896879_116896956	0.0275779	Hoxa9_Hoxb9	ENSMUST00000048229.7|Myrfl|ENSMUSG00000034057.7|myelin regulatory factor-like
mm10_v2_chr15_+_85510812_85510812	0.027335	Hoxa9_Hoxb9	ENSMUST00000079690.2|Gm4825|ENSMUSG00000063548.2|predicted pseudogene 4825
mm10_v2_chr14_-_33978751_33978791	0.0269811	Hoxa9_Hoxb9	ENSMUST00000166737.1|Zfp488|ENSMUSG00000044519.8|zinc finger protein 488
mm10_v2_chr1_-_24005608_24005656	0.0267785	Hoxa9_Hoxb9	ENSMUST00000027338.3|1110058L19Rik|ENSMUSG00000026154.4|RIKEN cDNA 1110058L19 gene
mm10_v2_chr7_+_44896077_44896106	0.0264817	Hoxa9_Hoxb9	ENSMUST00000071207.7|Fuz|ENSMUSG00000011658.8|fuzzy homolog (Drosophila) 	ENSMUST00000166849.1|Fuz|ENSMUSG00000011658.8|fuzzy homolog (Drosophila) 	ENSMUST00000168712.1|Fuz|ENSMUSG00000011658.8|fuzzy homolog (Drosophila) 	ENSMUST00000168389.1|Fuz|ENSMUSG00000011658.8|fuzzy homolog (Drosophila)
mm10_v2_chr18_-_31317043_31317133	0.0264326	Hoxa9_Hoxb9	ENSMUST00000139924.1|Rit2|ENSMUSG00000057455.6|Ras-like without CAAX 2 	ENSMUST00000153060.1|Rit2|ENSMUSG00000057455.6|Ras-like without CAAX 2
mm10_v2_chr2_+_58754910_58754942	0.0264061	Hoxa9_Hoxb9	ENSMUST00000059102.6|Upp2|ENSMUSG00000026839.10|uridine phosphorylase 2
mm10_v2_chr1_+_59256906_59256907	0.0264029	Hoxa9_Hoxb9	ENSMUST00000160662.1|Cdk15|ENSMUSG00000026023.10|cyclin-dependent kinase 15 	ENSMUST00000114248.2|Cdk15|ENSMUSG00000026023.10|cyclin-dependent kinase 15
mm10_v2_chr7_+_45062429_45062505	0.024694	Hoxa9_Hoxb9	ENSMUST00000107830.1|Nosip|ENSMUSG00000003421.6|nitric oxide synthase interacting protein 	ENSMUST00000003513.3|Nosip|ENSMUSG00000003421.6|nitric oxide synthase interacting protein 	ENSMUST00000107829.1|Nosip|ENSMUSG00000003421.6|nitric oxide synthase interacting protein 	ENSMUST00000150609.1|Nosip|ENSMUSG00000003421.6|nitric oxide synthase interacting protein
mm10_v2_chrX_+_139563316_139563339	0.0231594	Hoxa9_Hoxb9	ENSMUST00000113027.1|Rnf128|ENSMUSG00000031438.5|ring finger protein 128
mm10_v2_chr2_+_180967291_180967303	0.0230005	Hoxa9_Hoxb9	ENSMUST00000108859.1|Arfgap1|ENSMUSG00000027575.13|ADP-ribosylation factor GTPase activating protein 1
mm10_v2_chr3_+_132634725_132634725	0.02264	Hoxa9_Hoxb9	ENSMUST00000163241.1|Gm5549|ENSMUSG00000091721.1|predicted gene 5549
mm10_v2_chr9_-_107770945_107771007	0.0218006	Hoxa9_Hoxb9	ENSMUST00000183248.1|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5 	ENSMUST00000182022.1|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5 	ENSMUST00000035199.6|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5 	ENSMUST00000182659.1|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5
mm10_v2_chr17_-_29007925_29007962	0.0215149	Hoxa9_Hoxb9	ENSMUST00000009138.5|Stk38|ENSMUSG00000024006.10|serine/threonine kinase 38 	ENSMUST00000119274.1|Stk38|ENSMUSG00000024006.10|serine/threonine kinase 38
mm10_v2_chr3_+_90062781_90062836	0.0214355	Hoxa9_Hoxb9	ENSMUST00000029551.2|1700094D03Rik|ENSMUSG00000078667.2|RIKEN cDNA 1700094D03 gene
mm10_v2_chr1_+_153891646_153891740	0.0187996	Hoxa9_Hoxb9	ENSMUST00000050660.4|Teddm1|ENSMUSG00000047053.4|transmembrane epididymal protein 1
mm10_v2_chr7_-_30232186_30232272	0.0186283	Hoxa9_Hoxb9	ENSMUST00000006254.5|Tbcb|ENSMUSG00000006095.6|tubulin folding cofactor B
mm10_v2_chr8_-_4105764_4105835	0.0177904	Hoxa9_Hoxb9	ENSMUST00000138439.1|Cd209f|ENSMUSG00000051906.8|CD209f antigen 	ENSMUST00000145007.1|Cd209f|ENSMUSG00000051906.8|CD209f antigen
mm10_v2_chr5_+_34999070_34999086	0.0174292	Hoxa9_Hoxb9	ENSMUST00000114280.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr4_+_44012638_44012660	0.0171545	Hoxa9_Hoxb9	ENSMUST00000107847.3|Clta|ENSMUSG00000028478.12|clathrin, light polypeptide (Lca) 	ENSMUST00000170241.1|Clta|ENSMUSG00000028478.12|clathrin, light polypeptide (Lca)
mm10_v2_chr3_+_138415484_138415510	0.0170246	Hoxa9_Hoxb9	ENSMUST00000161312.1|Adh4|ENSMUSG00000037797.8|alcohol dehydrogenase 4 (class II), pi polypeptide 	ENSMUST00000013458.8|Adh4|ENSMUSG00000037797.8|alcohol dehydrogenase 4 (class II), pi polypeptide
mm10_v2_chr16_-_17531019_17531136	0.0163965	Hoxa9_Hoxb9	ENSMUST00000142666.1|Thap7|ENSMUSG00000022760.9|THAP domain containing 7 	ENSMUST00000100125.3|Thap7|ENSMUSG00000022760.9|THAP domain containing 7
mm10_v2_chr5_+_31452427_31452452	0.0153521	Hoxa9_Hoxb9	ENSMUST00000076264.4|Zfp512|ENSMUSG00000062761.4|zinc finger protein 512
mm10_v2_chrX_-_72918284_72918396	0.0153206	Hoxa9_Hoxb9	ENSMUST00000152200.1|Cetn2|ENSMUSG00000031347.6|centrin 2
mm10_v2_chr5_+_34999111_34999184	0.0139969	Hoxa9_Hoxb9	ENSMUST00000114283.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr4_+_44012661_44012694	0.0139932	Hoxa9_Hoxb9	ENSMUST00000107849.3|Clta|ENSMUSG00000028478.12|clathrin, light polypeptide (Lca) 	ENSMUST00000107851.3|Clta|ENSMUSG00000028478.12|clathrin, light polypeptide (Lca) 	ENSMUST00000107845.3|Clta|ENSMUSG00000028478.12|clathrin, light polypeptide (Lca)
mm10_v2_chr17_-_36889533_36889675	0.013817	Hoxa9_Hoxb9	ENSMUST00000172711.1|Trim40|ENSMUSG00000073399.3|tripartite motif-containing 40
mm10_v2_chr7_-_130772652_130772652	0.0131419	Hoxa9_Hoxb9	ENSMUST00000057134.4|Etos1|ENSMUSG00000050189.4|ectopic ossification 1
mm10_v2_chr18_+_37400845_37400886	0.0118368	Hoxa9_Hoxb9	ENSMUST00000057228.1|Pcdhb9|ENSMUSG00000051242.1|protocadherin beta 9
mm10_v2_chr7_+_28277706_28277770	0.0108763	Hoxa9_Hoxb9	ENSMUST00000094651.2|Eid2b|ENSMUSG00000070705.2|EP300 interacting inhibitor of differentiation 2B
mm10_v2_chr17_+_33638056_33638110	0.0105934	Hoxa9_Hoxb9	ENSMUST00000052079.7|Pram1|ENSMUSG00000032739.10|PML-RAR alpha-regulated adaptor molecule 1
mm10_v2_chr11_+_67078293_67078307	0.00966954	Hoxa9_Hoxb9	ENSMUST00000108689.1|Myh3|ENSMUSG00000020908.8|myosin, heavy polypeptide 3, skeletal muscle, embryonic 	ENSMUST00000165221.1|Myh3|ENSMUSG00000020908.8|myosin, heavy polypeptide 3, skeletal muscle, embryonic 	ENSMUST00000007301.7|Myh3|ENSMUSG00000020908.8|myosin, heavy polypeptide 3, skeletal muscle, embryonic
mm10_v2_chr5_-_26089291_26089291	0.00944661	Hoxa9_Hoxb9	ENSMUST00000094946.4|Gm10471|ENSMUSG00000073116.4|predicted gene 10471
mm10_v2_chr11_+_59542686_59542726	0.00913244	Hoxa9_Hoxb9	ENSMUST00000101148.2|Nlrp3|ENSMUSG00000032691.8|NLR family, pyrin domain containing 3
mm10_v2_chr18_+_20310738_20310811	0.00853132	Hoxa9_Hoxb9	ENSMUST00000077146.3|Dsg1a|ENSMUSG00000069441.3|desmoglein 1 alpha
mm10_v2_chr8_+_112570043_112570060	0.00844623	Hoxa9_Hoxb9	ENSMUST00000034225.6|Cntnap4|ENSMUSG00000031772.11|contactin associated protein-like 4 	ENSMUST00000118171.1|Cntnap4|ENSMUSG00000031772.11|contactin associated protein-like 4
mm10_v2_chr11_-_115933464_115933498	0.00841407	Hoxa9_Hoxb9	ENSMUST00000021097.3|Recql5|ENSMUSG00000020752.5|RecQ protein-like 5
mm10_v2_chr1_+_89454769_89454885	0.00716605	Hoxa9_Hoxb9	ENSMUST00000027521.8|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 	ENSMUST00000074945.5|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm10_v2_chr7_-_135528645_135528661	0.00676793	Hoxa9_Hoxb9	ENSMUST00000053716.7|Clrn3|ENSMUSG00000050866.7|clarin 3
mm10_v2_chr7_+_103550368_103550368	0.00605617	Hoxa9_Hoxb9	ENSMUST00000106888.1|Olfr613|ENSMUSG00000078624.2|olfactory receptor 613
mm10_v2_chr18_+_20247340_20247340	0.00566757	Hoxa9_Hoxb9	ENSMUST00000054128.6|Dsg1c|ENSMUSG00000034774.6|desmoglein 1 gamma
mm10_v2_chrX_-_53209724_53209800	0.00505475	Hoxa9_Hoxb9	ENSMUST00000174390.1|Plac1|ENSMUSG00000061082.5|placental specific protein 1
mm10_v2_chr17_-_38131190_38131190	0.00465287	Hoxa9_Hoxb9	ENSMUST00000087128.1|Olfr132|ENSMUSG00000067186.1|olfactory receptor 132
mm10_v2_chr3_+_83026147_83026162	0.00464725	Hoxa9_Hoxb9	ENSMUST00000166581.1|Fga|ENSMUSG00000028001.10|fibrinogen alpha chain 	ENSMUST00000029630.9|Fga|ENSMUSG00000028001.10|fibrinogen alpha chain
mm10_v2_chr12_-_100159601_100159672	0.0044544	Hoxa9_Hoxb9	ENSMUST00000021596.7|Nrde2|ENSMUSG00000021179.7|nrde-2 necessary for RNA interference, domain containing
mm10_v2_chr13_+_16014457_16014475	0.00443269	Hoxa9_Hoxb9	ENSMUST00000164993.1|Inhba|ENSMUSG00000041324.7|inhibin beta-A
mm10_v2_chr10_+_3872667_3872788	0.00433275	Hoxa9_Hoxb9	ENSMUST00000136671.1|Plekhg1|ENSMUSG00000040624.11|pleckstrin homology domain containing, family G (with RhoGef domain) member 1 	ENSMUST00000042438.6|Plekhg1|ENSMUSG00000040624.11|pleckstrin homology domain containing, family G (with RhoGef domain) member 1
mm10_v2_chr18_+_20376723_20376740	0.00400438	Hoxa9_Hoxb9	ENSMUST00000076737.6|Dsg1b|ENSMUSG00000061928.6|desmoglein 1 beta
mm10_v2_chr4_+_115737738_115737752	0.00361011	Hoxa9_Hoxb9	ENSMUST00000106525.2|Efcab14|ENSMUSG00000034210.7|EF-hand calcium binding domain 14
mm10_v2_chr2_+_32395896_32395896	0.0030117	Hoxa9_Hoxb9	ENSMUST00000028162.3|Ptges2|ENSMUSG00000026820.3|prostaglandin E synthase 2
mm10_v2_chr1_+_13668739_13668772	0.00296661	Hoxa9_Hoxb9	ENSMUST00000088542.3|Xkr9|ENSMUSG00000067813.3|X Kell blood group precursor related family member 9 homolog
mm10_v2_chr9_-_60687459_60687672	0.00293669	Hoxa9_Hoxb9	ENSMUST00000114032.1|Lrrc49|ENSMUSG00000047766.9|leucine rich repeat containing 49 	ENSMUST00000166168.1|Lrrc49|ENSMUSG00000047766.9|leucine rich repeat containing 49 	ENSMUST00000132366.1|Lrrc49|ENSMUSG00000047766.9|leucine rich repeat containing 49
mm10_v2_chrX_-_101085352_101085372	0.00280486	Hoxa9_Hoxb9	ENSMUST00000101362.1|Slc7a3|ENSMUSG00000031297.8|solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 	ENSMUST00000073927.4|Slc7a3|ENSMUSG00000031297.8|solute carrier family 7 (cationic amino acid transporter, y+ system), member 3
mm10_v2_chr11_-_78386558_78386598	0.00274297	Hoxa9_Hoxb9	ENSMUST00000108294.1|Foxn1|ENSMUSG00000002057.4|forkhead box N1
mm10_v2_chr8_+_120488416_120488490	0.00230689	Hoxa9_Hoxb9	ENSMUST00000034279.9|Gse1|ENSMUSG00000031822.12|genetic suppressor element 1
mm10_v2_chr4_+_133130505_133130590	0.00208034	Hoxa9_Hoxb9	ENSMUST00000084241.5|Wasf2|ENSMUSG00000028868.7|WAS protein family, member 2 	ENSMUST00000138831.1|Wasf2|ENSMUSG00000028868.7|WAS protein family, member 2
mm10_v2_chr17_+_35861343_35861486	0.00206978	Hoxa9_Hoxb9	ENSMUST00000172931.1|Nrm|ENSMUSG00000059791.8|nurim (nuclear envelope membrane protein)
mm10_v2_chr2_+_84988194_84988215	0.00161432	Hoxa9_Hoxb9	ENSMUST00000028466.5|Prg3|ENSMUSG00000027072.7|proteoglycan 3
mm10_v2_chr3_-_102782708_102782715	0.0014779	Hoxa9_Hoxb9	ENSMUST00000029450.3|Tshb|ENSMUSG00000027857.4|thyroid stimulating hormone, beta subunit 	ENSMUST00000172026.1|Tshb|ENSMUSG00000027857.4|thyroid stimulating hormone, beta subunit 	ENSMUST00000170856.1|Tshb|ENSMUSG00000027857.4|thyroid stimulating hormone, beta subunit
mm10_v2_chr11_+_115403734_115403777	0.00115922	Hoxa9_Hoxb9	ENSMUST00000153983.1|Ict1|ENSMUSG00000018858.9|immature colon carcinoma transcript 1 	ENSMUST00000106539.3|Ict1|ENSMUSG00000018858.9|immature colon carcinoma transcript 1 	ENSMUST00000103036.4|Ict1|ENSMUSG00000018858.9|immature colon carcinoma transcript 1
mm10_v2_chr3_-_106406090_106406182	0.00105442	Hoxa9_Hoxb9	ENSMUST00000029510.7|BC051070|ENSMUSG00000027902.7|cDNA sequence BC051070
mm10_v2_chr16_+_48816856_48816976	0.000539142	Hoxa9_Hoxb9	ENSMUST00000023328.6|Retnlb|ENSMUSG00000022650.6|resistin like beta
