mm10_v2_chr2_-_20943413_20943424	0.561282	Hoxd1	ENSMUST00000140230.1|Arhgap21|ENSMUSG00000036591.9|Rho GTPase activating protein 21
mm10_v2_chr3_-_15426427_15426427	0.486584	Hoxd1	ENSMUST00000099201.3|Sirpb1a|ENSMUSG00000095788.1|signal-regulatory protein beta 1A
mm10_v2_chr17_-_48432723_48432741	0.458189	Hoxd1	ENSMUST00000046549.3|Apobec2|ENSMUSG00000040694.3|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2
mm10_v2_chr19_+_23723279_23723279	0.401696	Hoxd1	ENSMUST00000067077.1|Gm9938|ENSMUSG00000054178.1|predicted gene 9938
mm10_v2_chr6_-_124779686_124779742	0.395927	Hoxd1	ENSMUST00000147669.1|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000128697.1|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000032218.3|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000112475.2|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23
mm10_v2_chr2_+_69897255_69897303	0.371308	Hoxd1	ENSMUST00000131553.1|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chr17_-_45659312_45659335	0.296277	Hoxd1	ENSMUST00000120717.1|Capn11|ENSMUSG00000058626.10|calpain 11
mm10_v2_chr11_-_117826092_117826092	0.293609	Hoxd1	ENSMUST00000026661.3|Tk1|ENSMUSG00000025574.7|thymidine kinase 1
mm10_v2_chr1_+_139454747_139454825	0.281216	Hoxd1	ENSMUST00000053364.8|Aspm|ENSMUSG00000033952.8|asp (abnormal spindle)-like, microcephaly associated (Drosophila) 	ENSMUST00000097554.3|Aspm|ENSMUSG00000033952.8|asp (abnormal spindle)-like, microcephaly associated (Drosophila)
mm10_v2_chr13_+_21717626_21717631	0.27437	Hoxd1	ENSMUST00000091754.2|Hist1h3h|ENSMUSG00000069312.2|histone cluster 1, H3h
mm10_v2_chr10_+_103367748_103367836	0.262544	Hoxd1	ENSMUST00000074204.4|Slc6a15|ENSMUSG00000019894.7|solute carrier family 6 (neurotransmitter transporter), member 15 	ENSMUST00000179636.1|Slc6a15|ENSMUSG00000019894.7|solute carrier family 6 (neurotransmitter transporter), member 15
mm10_v2_chrX_+_9885622_9885622	0.246208	Hoxd1	ENSMUST00000067529.2|Sytl5|ENSMUSG00000054453.5|synaptotagmin-like 5 	ENSMUST00000086165.3|Sytl5|ENSMUSG00000054453.5|synaptotagmin-like 5
mm10_v2_chr12_-_55014329_55014353	0.227275	Hoxd1	ENSMUST00000172875.1|Baz1a|ENSMUSG00000035021.7|bromodomain adjacent to zinc finger domain 1A
mm10_v2_chr5_-_90640464_90640539	0.227208	Hoxd1	ENSMUST00000031317.6|Rassf6|ENSMUSG00000029370.7|Ras association (RalGDS/AF-6) domain family member 6
mm10_v2_chr15_-_8710409_8710498	0.214064	Hoxd1	ENSMUST00000157065.1|Slc1a3|ENSMUSG00000005360.8|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm10_v2_chr15_+_82256023_82256130	0.212681	Hoxd1	ENSMUST00000143238.1|1500009C09Rik|ENSMUSG00000068099.4|RIKEN cDNA 1500009C09 gene
mm10_v2_chr19_-_41933276_41933319	0.206359	Hoxd1	ENSMUST00000075280.4|Exosc1|ENSMUSG00000034321.7|exosome component 1 	ENSMUST00000112123.2|Exosc1|ENSMUSG00000034321.7|exosome component 1
mm10_v2_chr9_-_107872403_107872422	0.205961	Hoxd1	ENSMUST00000183035.1|Rbm6|ENSMUSG00000032582.8|RNA binding motif protein 6
mm10_v2_chr9_+_53771499_53771535	0.191844	Hoxd1	ENSMUST00000048670.8|Slc35f2|ENSMUSG00000042195.8|solute carrier family 35, member F2
mm10_v2_chr7_+_101896817_101896961	0.167622	Hoxd1	ENSMUST00000143835.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15
mm10_v2_chr2_+_119047116_119047121	0.160781	Hoxd1	ENSMUST00000152380.1|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5 	ENSMUST00000099542.2|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5
mm10_v2_chr2_+_119047129_119047159	0.154326	Hoxd1	ENSMUST00000153300.1|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5 	ENSMUST00000028799.5|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5
mm10_v2_chr2_-_156392829_156392993	0.151713	Hoxd1	ENSMUST00000088578.2|2900097C17Rik|ENSMUSG00000067833.2|RIKEN cDNA 2900097C17 gene
mm10_v2_chr14_+_62292475_62292589	0.151124	Hoxd1	ENSMUST00000166879.1|Rnaseh2b|ENSMUSG00000021932.7|ribonuclease H2, subunit B
mm10_v2_chr4_-_147702553_147702553	0.147766	Hoxd1	ENSMUST00000117638.1|Zfp534|ENSMUSG00000062518.7|zinc finger protein 534
mm10_v2_chr10_-_128626464_128626520	0.146703	Hoxd1	ENSMUST00000026420.5|Rps26|ENSMUSG00000025362.5|ribosomal protein S26
mm10_v2_chr15_-_34356421_34356421	0.14596	Hoxd1	ENSMUST00000179647.1|9430069I07Rik|ENSMUSG00000094447.1|RIKEN cDNA 9430069I07 gene
mm10_v2_chr19_-_37330613_37330613	0.145357	Hoxd1	ENSMUST00000131070.1|Ide|ENSMUSG00000056999.8|insulin degrading enzyme
mm10_v2_chr4_+_146097312_146097345	0.142904	Hoxd1	ENSMUST00000105730.1|Gm13051|ENSMUSG00000066009.8|predicted gene 13051 	ENSMUST00000091878.5|Gm13051|ENSMUSG00000066009.8|predicted gene 13051
mm10_v2_chr4_+_146502027_146502027	0.142752	Hoxd1	ENSMUST00000105735.2|Gm13247|ENSMUSG00000056300.8|predicted gene 13247
mm10_v2_chr16_+_11406618_11406675	0.140898	Hoxd1	ENSMUST00000122168.1|Snx29|ENSMUSG00000071669.8|sorting nexin 29
mm10_v2_chrX_-_143933089_143933142	0.139966	Hoxd1	ENSMUST00000087313.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr12_-_24493656_24493656	0.139172	Hoxd1	ENSMUST00000073088.2|Gm16372|ENSMUSG00000057160.2|predicted pseudogene 16372
mm10_v2_chr1_+_65186727_65186750	0.12808	Hoxd1	ENSMUST00000097707.4|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing 	ENSMUST00000081154.7|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing
mm10_v2_chr15_-_101370125_101370169	0.121155	Hoxd1	ENSMUST00000077196.4|Krt80|ENSMUSG00000037185.8|keratin 80
mm10_v2_chr13_-_102905740_102905814	0.120668	Hoxd1	ENSMUST00000167462.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr1_-_158356258_158356313	0.120427	Hoxd1	ENSMUST00000004133.8|Brinp2|ENSMUSG00000004031.8|bone morphogenic protein/retinoic acid inducible neural-specific 2
mm10_v2_chr4_+_146514920_146514920	0.117132	Hoxd1	ENSMUST00000140089.1|Gm13247|ENSMUSG00000056300.8|predicted gene 13247 	ENSMUST00000179175.1|Gm13247|ENSMUSG00000056300.8|predicted gene 13247
mm10_v2_chr11_-_87108656_87108719	0.115957	Hoxd1	ENSMUST00000051395.8|Prr11|ENSMUSG00000020493.8|proline rich 11
mm10_v2_chr2_-_164638789_164638810	0.114862	Hoxd1	ENSMUST00000109336.1|Wfdc16|ENSMUSG00000070530.5|WAP four-disulfide core domain 16
mm10_v2_chr19_+_8802486_8802530	0.11424	Hoxd1	ENSMUST00000172175.1|Zbtb3|ENSMUSG00000071661.6|zinc finger and BTB domain containing 3
mm10_v2_chr4_+_130360132_130360208	0.112075	Hoxd1	ENSMUST00000105994.3|Snrnp40|ENSMUSG00000074088.6|small nuclear ribonucleoprotein 40 (U5)
mm10_v2_chr11_-_121388186_121388267	0.111267	Hoxd1	ENSMUST00000106107.2|Rab40b|ENSMUSG00000025170.7|Rab40b, member RAS oncogene family
mm10_v2_chr15_-_8710734_8710764	0.109372	Hoxd1	ENSMUST00000005493.7|Slc1a3|ENSMUSG00000005360.8|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm10_v2_chr2_-_17460610_17460635	0.103592	Hoxd1	ENSMUST00000145492.1|Nebl|ENSMUSG00000053702.10|nebulette
mm10_v2_chr2_-_172370506_172370540	0.103111	Hoxd1	ENSMUST00000109139.1|Aurka|ENSMUSG00000027496.9|aurora kinase A 	ENSMUST00000028997.7|Aurka|ENSMUSG00000027496.9|aurora kinase A 	ENSMUST00000109140.3|Aurka|ENSMUSG00000027496.9|aurora kinase A
mm10_v2_chr14_+_48446128_48446276	0.10217	Hoxd1	ENSMUST00000124720.1|Tmem260|ENSMUSG00000036339.11|transmembrane protein 260
mm10_v2_chr18_-_61707583_61707658	0.101684	Hoxd1	ENSMUST00000025472.1|Pcyox1l|ENSMUSG00000024579.2|prenylcysteine oxidase 1 like
mm10_v2_chr4_+_145585166_145585211	0.101263	Hoxd1	ENSMUST00000105739.1|Gm13212|ENSMUSG00000078502.4|predicted gene 13212 	ENSMUST00000119718.1|Gm13212|ENSMUSG00000078502.4|predicted gene 13212
mm10_v2_chr4_+_145514884_145514884	0.100625	Hoxd1	ENSMUST00000105741.1|Gm13225|ENSMUSG00000078503.3|predicted gene 13225
mm10_v2_chr8_+_46010596_46010635	0.0972185	Hoxd1	ENSMUST00000110381.2|Lrp2bp|ENSMUSG00000031637.7|Lrp2 binding protein
mm10_v2_chr9_-_55919605_55919605	0.0958576	Hoxd1	ENSMUST00000037408.8|Scaper|ENSMUSG00000034007.9|S phase cyclin A-associated protein in the ER
mm10_v2_chr4_+_145510759_145510791	0.0940923	Hoxd1	ENSMUST00000105742.1|Gm13225|ENSMUSG00000078503.3|predicted gene 13225 	ENSMUST00000136309.1|Gm13225|ENSMUSG00000078503.3|predicted gene 13225
mm10_v2_chr15_-_9529868_9529881	0.0924786	Hoxd1	ENSMUST00000003981.4|Il7r|ENSMUSG00000003882.4|interleukin 7 receptor
mm10_v2_chr19_-_32196393_32196428	0.0917785	Hoxd1	ENSMUST00000151822.1|Sgms1|ENSMUSG00000040451.11|sphingomyelin synthase 1
mm10_v2_chr13_-_102906046_102906111	0.0909853	Hoxd1	ENSMUST00000171791.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr7_+_101896340_101896431	0.0885393	Hoxd1	ENSMUST00000035395.7|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15 	ENSMUST00000106973.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15 	ENSMUST00000144207.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15
mm10_v2_chr17_+_88440711_88440741	0.0883742	Hoxd1	ENSMUST00000112238.2|Foxn2|ENSMUSG00000034998.12|forkhead box N2 	ENSMUST00000155640.1|Foxn2|ENSMUSG00000034998.12|forkhead box N2
mm10_v2_chr1_-_24612700_24612700	0.0866799	Hoxd1	ENSMUST00000088336.1|Gm10222|ENSMUSG00000067736.1|predicted gene 10222
mm10_v2_chr18_-_60273267_60273267	0.0855387	Hoxd1	ENSMUST00000090260.4|Gm4841|ENSMUSG00000068606.5|predicted gene 4841
mm10_v2_chrM_+_9870_9885	0.0852679	Hoxd1	ENSMUST00000084013.1|mt-Nd4l|ENSMUSG00000065947.3|mitochondrially encoded NADH dehydrogenase 4L
mm10_v2_chr4_+_95557494_95557544	0.0819358	Hoxd1	ENSMUST00000079223.4|Fggy|ENSMUSG00000028573.12|FGGY carbohydrate kinase domain containing 	ENSMUST00000177394.1|Fggy|ENSMUSG00000028573.12|FGGY carbohydrate kinase domain containing
mm10_v2_chr2_+_65620829_65620857	0.0808686	Hoxd1	ENSMUST00000028377.7|Scn2a1|ENSMUSG00000075318.6|sodium channel, voltage-gated, type II, alpha 1
mm10_v2_chr10_+_116018213_116018421	0.079566	Hoxd1	ENSMUST00000063470.4|Ptprr|ENSMUSG00000020151.10|protein tyrosine phosphatase, receptor type, R
mm10_v2_chr4_+_103143052_103143071	0.0787524	Hoxd1	ENSMUST00000106855.1|Mier1|ENSMUSG00000028522.10|mesoderm induction early response 1 homolog (Xenopus laevis
mm10_v2_chr4_+_140700487_140700541	0.0772855	Hoxd1	ENSMUST00000071169.2|Rcc2|ENSMUSG00000040945.7|regulator of chromosome condensation 2
mm10_v2_chrX_+_160768013_160768122	0.0771803	Hoxd1	ENSMUST00000033650.7|Rs1|ENSMUSG00000031293.7|retinoschisis (X-linked, juvenile) 1 (human)
mm10_v2_chr2_+_37516618_37516634	0.076376	Hoxd1	ENSMUST00000065441.6|Gpr21|ENSMUSG00000053164.6|G protein-coupled receptor 21
mm10_v2_chr12_+_52699297_52699411	0.0753255	Hoxd1	ENSMUST00000095737.3|Akap6|ENSMUSG00000061603.7|A kinase (PRKA) anchor protein 6
mm10_v2_chr10_+_128337761_128337832	0.0739628	Hoxd1	ENSMUST00000005826.7|Cs|ENSMUSG00000005683.7|citrate synthase
mm10_v2_chr2_-_69712461_69712606	0.0739153	Hoxd1	ENSMUST00000102706.3|Fastkd1|ENSMUSG00000027086.10|FAST kinase domains 1 	ENSMUST00000073152.6|Fastkd1|ENSMUSG00000027086.10|FAST kinase domains 1
mm10_v2_chr2_+_69897220_69897247	0.0731036	Hoxd1	ENSMUST00000055758.9|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3 	ENSMUST00000112251.2|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chr9_-_20959785_20959888	0.0723164	Hoxd1	ENSMUST00000177754.1|Dnmt1|ENSMUSG00000004099.9|DNA methyltransferase (cytosine-5) 1
mm10_v2_chr11_+_58171648_58171688	0.0705759	Hoxd1	ENSMUST00000020820.1|Mrpl22|ENSMUSG00000020514.2|mitochondrial ribosomal protein L22
mm10_v2_chr16_-_38800193_38800209	0.0705676	Hoxd1	ENSMUST00000057767.4|Upk1b|ENSMUSG00000049436.4|uroplakin 1B
mm10_v2_chr2_-_164613600_164613630	0.0705597	Hoxd1	ENSMUST00000094351.4|Wfdc8|ENSMUSG00000070533.5|WAP four-disulfide core domain 8 	ENSMUST00000109338.1|Wfdc8|ENSMUSG00000070533.5|WAP four-disulfide core domain 8
mm10_v2_chr3_-_15848419_15848528	0.0679229	Hoxd1	ENSMUST00000108354.1|Sirpb1c|ENSMUSG00000074677.5|signal-regulatory protein beta 1C 	ENSMUST00000108349.1|Sirpb1c|ENSMUSG00000074677.5|signal-regulatory protein beta 1C 	ENSMUST00000108352.2|Sirpb1c|ENSMUSG00000074677.5|signal-regulatory protein beta 1C 	ENSMUST00000108350.1|Sirpb1c|ENSMUSG00000074677.5|signal-regulatory protein beta 1C 	ENSMUST00000050623.4|Sirpb1c|ENSMUSG00000074677.5|signal-regulatory protein beta 1C
mm10_v2_chr7_-_140154712_140154877	0.0675689	Hoxd1	ENSMUST00000059241.7|Sprn|ENSMUSG00000045733.7|shadow of prion protein
mm10_v2_chr9_-_86880647_86880659	0.0668055	Hoxd1	ENSMUST00000167014.1|Snap91|ENSMUSG00000033419.9|synaptosomal-associated protein 91
mm10_v2_chrX_+_16619698_16619758	0.0659775	Hoxd1	ENSMUST00000026013.5|Maoa|ENSMUSG00000025037.6|monoamine oxidase A
mm10_v2_chr3_-_16006332_16006361	0.0650295	Hoxd1	ENSMUST00000108347.2|Gm5150|ENSMUSG00000078780.2|predicted gene 5150
mm10_v2_chr4_-_14621494_14621506	0.0644771	Hoxd1	ENSMUST00000149633.1|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr3_-_15575065_15575065	0.0639726	Hoxd1	ENSMUST00000091319.4|Sirpb1b|ENSMUSG00000095028.1|signal-regulatory protein beta 1B
mm10_v2_chr12_-_80643799_80643857	0.063486	Hoxd1	ENSMUST00000166931.1|Erh|ENSMUSG00000021131.7|enhancer of rudimentary homolog (Drosophila)
mm10_v2_chr14_+_47298260_47298342	0.0632491	Hoxd1	ENSMUST00000166743.1|Mapk1ip1l|ENSMUSG00000021840.10|mitogen-activated protein kinase 1 interacting protein 1-like
mm10_v2_chr7_+_79273201_79273270	0.062435	Hoxd1	ENSMUST00000037315.6|Abhd2|ENSMUSG00000039202.6|abhydrolase domain containing 2
mm10_v2_chr9_-_111271568_111271608	0.0608265	Hoxd1	ENSMUST00000035079.3|Mlh1|ENSMUSG00000032498.3|mutL homolog 1 (E. coli)
mm10_v2_chrX_+_106015699_106015759	0.0569754	Hoxd1	ENSMUST00000033582.4|Cox7b|ENSMUSG00000031231.4|cytochrome c oxidase subunit VIIb
mm10_v2_chr11_-_30649510_30649587	0.0563898	Hoxd1	ENSMUST00000074613.3|Acyp2|ENSMUSG00000060923.5|acylphosphatase 2, muscle type
mm10_v2_chrX_-_143933204_143933311	0.0528621	Hoxd1	ENSMUST00000112851.1|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000112856.2|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000033642.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr5_-_138170992_138171033	0.0519248	Hoxd1	ENSMUST00000139983.1|Mcm7|ENSMUSG00000029730.10|minichromosome maintenance deficient 7 (S. cerevisiae)
mm10_v2_chr11_-_45955183_45955193	0.0513416	Hoxd1	ENSMUST00000109254.1|Thg1l|ENSMUSG00000011254.10|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm10_v2_chr14_+_32321987_32322042	0.050953	Hoxd1	ENSMUST00000022480.7|Ogdhl|ENSMUSG00000021913.7|oxoglutarate dehydrogenase-like
mm10_v2_chrX_-_160138375_160138435	0.0505146	Hoxd1	ENSMUST00000033662.8|Pdha1|ENSMUSG00000031299.10|pyruvate dehydrogenase E1 alpha 1
mm10_v2_chr10_+_94575257_94575295	0.0486024	Hoxd1	ENSMUST00000121471.1|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3
mm10_v2_chr14_-_52104015_52104028	0.0485565	Hoxd1	ENSMUST00000111610.4|Hnrnpc|ENSMUSG00000060373.8|heterogeneous nuclear ribonucleoprotein C 	ENSMUST00000164655.1|Hnrnpc|ENSMUSG00000060373.8|heterogeneous nuclear ribonucleoprotein C
mm10_v2_chr2_+_150190393_150190393	0.0481762	Hoxd1	ENSMUST00000109929.2|Gm14139|ENSMUSG00000079009.2|predicted gene 14139
mm10_v2_chr17_-_32822200_32822200	0.0480692	Hoxd1	ENSMUST00000179695.1|Zfp799|ENSMUSG00000095253.1|zinc finger protein 799
mm10_v2_chr16_+_18836573_18836583	0.0475294	Hoxd1	ENSMUST00000055413.6|2510002D24Rik|ENSMUSG00000071632.4|RIKEN cDNA 2510002D24 gene
mm10_v2_chrX_+_107255878_107256064	0.0466827	Hoxd1	ENSMUST00000101294.2|Gpr174|ENSMUSG00000073008.5|G protein-coupled receptor 174 	ENSMUST00000118820.1|Gpr174|ENSMUSG00000073008.5|G protein-coupled receptor 174 	ENSMUST00000120971.1|Gpr174|ENSMUSG00000073008.5|G protein-coupled receptor 174
mm10_v2_chr2_+_121956651_121956664	0.0452624	Hoxd1	ENSMUST00000110574.1|Ctdspl2|ENSMUSG00000033411.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm10_v2_chr11_-_45955465_45955494	0.0443033	Hoxd1	ENSMUST00000011398.6|Thg1l|ENSMUSG00000011254.10|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm10_v2_chr15_-_37459327_37459380	0.0432594	Hoxd1	ENSMUST00000119730.1|Ncald|ENSMUSG00000051359.8|neurocalcin delta 	ENSMUST00000120746.1|Ncald|ENSMUSG00000051359.8|neurocalcin delta
mm10_v2_chrX_-_160906998_160907052	0.0429278	Hoxd1	ENSMUST00000069417.5|Gja6|ENSMUSG00000055691.5|gap junction protein, alpha 6
mm10_v2_chr1_+_157506728_157506776	0.041619	Hoxd1	ENSMUST00000086130.2|Sec16b|ENSMUSG00000026589.8|SEC16 homolog B (S. cerevisiae)
mm10_v2_chr12_+_112760652_112760659	0.04144	Hoxd1	ENSMUST00000063888.3|Pld4|ENSMUSG00000052160.6|phospholipase D family, member 4
mm10_v2_chr11_-_4095344_4095445	0.0407381	Hoxd1	ENSMUST00000004868.5|Mtfp1|ENSMUSG00000004748.5|mitochondrial fission process 1
mm10_v2_chr16_-_45724600_45724619	0.0406962	Hoxd1	ENSMUST00000096057.4|Tagln3|ENSMUSG00000022658.10|transgelin 3
mm10_v2_chr15_+_25773985_25774042	0.038506	Hoxd1	ENSMUST00000125667.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr5_-_62766153_62766246	0.0383777	Hoxd1	ENSMUST00000076623.4|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr1_+_157506777_157506811	0.038289	Hoxd1	ENSMUST00000027881.8|Sec16b|ENSMUSG00000026589.8|SEC16 homolog B (S. cerevisiae)
mm10_v2_chr8_-_85380964_85380984	0.038037	Hoxd1	ENSMUST00000122452.1|Mylk3|ENSMUSG00000031698.8|myosin light chain kinase 3
mm10_v2_chr9_-_85749308_85749356	0.0379384	Hoxd1	ENSMUST00000039213.8|Ibtk|ENSMUSG00000035941.9|inhibitor of Bruton agammaglobulinemia tyrosine kinase
mm10_v2_chr17_-_32886083_32886083	0.0375694	Hoxd1	ENSMUST00000178401.1|Zfp870|ENSMUSG00000095325.1|zinc finger protein 870
mm10_v2_chr1_-_33814516_33814576	0.0367075	Hoxd1	ENSMUST00000044455.5|Zfp451|ENSMUSG00000042197.7|zinc finger protein 451 	ENSMUST00000115167.1|Zfp451|ENSMUSG00000042197.7|zinc finger protein 451
mm10_v2_chrX_-_99470672_99470748	0.0354556	Hoxd1	ENSMUST00000113797.3|Pja1|ENSMUSG00000034403.10|praja1, RING-H2 motif containing 	ENSMUST00000113790.1|Pja1|ENSMUSG00000034403.10|praja1, RING-H2 motif containing 	ENSMUST00000036354.6|Pja1|ENSMUSG00000034403.10|praja1, RING-H2 motif containing 	ENSMUST00000167246.1|Pja1|ENSMUSG00000034403.10|praja1, RING-H2 motif containing
mm10_v2_chr2_-_32387760_32387797	0.0353868	Hoxd1	ENSMUST00000050785.8|Lcn2|ENSMUSG00000026822.9|lipocalin 2
mm10_v2_chr4_-_14621805_14621819	0.0352106	Hoxd1	ENSMUST00000042221.7|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr14_-_70429072_70429096	0.0343876	Hoxd1	ENSMUST00000048129.4|Piwil2|ENSMUSG00000033644.4|piwi-like RNA-mediated gene silencing 2
mm10_v2_chr13_-_67332525_67332553	0.0343788	Hoxd1	ENSMUST00000168892.1|Zfp595|ENSMUSG00000057842.7|zinc finger protein 595 	ENSMUST00000109735.2|Zfp595|ENSMUSG00000057842.7|zinc finger protein 595
mm10_v2_chr1_+_107535508_107535508	0.0336852	Hoxd1	ENSMUST00000182198.1|Serpinb10|ENSMUSG00000098034.1|serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10
mm10_v2_chr16_-_19883873_19883915	0.03246	Hoxd1	ENSMUST00000100083.3|A930003A15Rik|ENSMUSG00000075330.3|RIKEN cDNA A930003A15 gene
mm10_v2_chr14_+_69347587_69347587	0.0318717	Hoxd1	ENSMUST00000064831.5|Entpd4|ENSMUSG00000095463.2|ectonucleoside triphosphate diphosphohydrolase 4
mm10_v2_chr9_+_105395348_105395411	0.0309186	Hoxd1	ENSMUST00000035181.3|Aste1|ENSMUSG00000032567.8|asteroid homolog 1 (Drosophila)
mm10_v2_chr13_+_42866247_42866301	0.0308223	Hoxd1	ENSMUST00000131942.1|Phactr1|ENSMUSG00000054728.10|phosphatase and actin regulator 1
mm10_v2_chr5_-_77115145_77115156	0.0307942	Hoxd1	ENSMUST00000081964.5|Hopx|ENSMUSG00000059325.8|HOP homeobox
mm10_v2_chr1_-_185329331_185329401	0.0305216	Hoxd1	ENSMUST00000027921.4|Iars2|ENSMUSG00000026618.5|isoleucine-tRNA synthetase 2, mitochondrial 	ENSMUST00000110975.1|Iars2|ENSMUSG00000026618.5|isoleucine-tRNA synthetase 2, mitochondrial 	ENSMUST00000110974.3|Iars2|ENSMUSG00000026618.5|isoleucine-tRNA synthetase 2, mitochondrial
mm10_v2_chr2_+_3424123_3424207	0.0304716	Hoxd1	ENSMUST00000061852.5|Dclre1c|ENSMUSG00000026648.12|DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) 	ENSMUST00000100463.3|Dclre1c|ENSMUSG00000026648.12|DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) 	ENSMUST00000102988.3|Dclre1c|ENSMUSG00000026648.12|DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) 	ENSMUST00000115066.1|Dclre1c|ENSMUSG00000026648.12|DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae)
mm10_v2_chr10_-_117148474_117148510	0.02981	Hoxd1	ENSMUST00000020381.3|Frs2|ENSMUSG00000020170.3|fibroblast growth factor receptor substrate 2
mm10_v2_chr7_+_130774069_130774185	0.0297172	Hoxd1	ENSMUST00000048453.5|Btbd16|ENSMUSG00000040298.5|BTB (POZ) domain containing 16
mm10_v2_chr1_+_40439627_40439649	0.029577	Hoxd1	ENSMUST00000097772.3|Il1rl1|ENSMUSG00000026069.9|interleukin 1 receptor-like 1
mm10_v2_chr16_-_16600533_16600576	0.0295088	Hoxd1	ENSMUST00000159542.1|Fgd4|ENSMUSG00000022788.10|FYVE, RhoGEF and PH domain containing 4
mm10_v2_chrX_+_101429555_101429708	0.0285323	Hoxd1	ENSMUST00000033673.6|Nono|ENSMUSG00000031311.11|non-POU-domain-containing, octamer binding protein
mm10_v2_chr7_+_127511976_127512075	0.0283528	Hoxd1	ENSMUST00000098025.4|Srcap|ENSMUSG00000053877.6|Snf2-related CREBBP activator protein
mm10_v2_chr2_-_168767136_168767201	0.0280322	Hoxd1	ENSMUST00000029061.5|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila) 	ENSMUST00000103074.1|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila)
mm10_v2_chr10_+_116966274_116966295	0.0280062	Hoxd1	ENSMUST00000033651.3|D630029K05Rik|ENSMUSG00000031294.3|RIKEN cDNA D630029K05 gene
mm10_v2_chr10_-_86011833_86011896	0.0277143	Hoxd1	ENSMUST00000105304.1|Bpifc|ENSMUSG00000050108.6|BPI fold containing family C 	ENSMUST00000061699.5|Bpifc|ENSMUSG00000050108.6|BPI fold containing family C
mm10_v2_chr18_+_37355271_37355271	0.0270511	Hoxd1	ENSMUST00000051163.1|Pcdhb8|ENSMUSG00000045876.3|protocadherin beta 8
mm10_v2_chr6_-_130129898_130129898	0.0269518	Hoxd1	ENSMUST00000014476.5|Klra8|ENSMUSG00000089727.2|killer cell lectin-like receptor, subfamily A, member 8
mm10_v2_chr3_+_94837702_94837723	0.0263603	Hoxd1	ENSMUST00000107266.1|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain 	ENSMUST00000042402.5|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain 	ENSMUST00000107269.1|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain
mm10_v2_chr4_+_147492417_147492417	0.0256944	Hoxd1	ENSMUST00000105721.2|Gm13152|ENSMUSG00000078496.3|predicted gene 13152
mm10_v2_chr7_-_6730412_6730431	0.0253695	Hoxd1	ENSMUST00000051209.4|Peg3|ENSMUSG00000002265.9|paternally expressed 3
mm10_v2_chr8_-_122915987_122915987	0.0253565	Hoxd1	ENSMUST00000098333.4|Ankrd11|ENSMUSG00000035569.10|ankyrin repeat domain 11
mm10_v2_chr2_+_116067213_116067250	0.0250857	Hoxd1	ENSMUST00000152412.1|G630016G05Rik|ENSMUSG00000086308.1|RIKEN cDNA G630016G05 gene
mm10_v2_chr2_+_121956411_121956480	0.0241764	Hoxd1	ENSMUST00000110578.1|Ctdspl2|ENSMUSG00000033411.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm10_v2_chr5_+_107497762_107497802	0.0229482	Hoxd1	ENSMUST00000152474.1|A830010M20Rik|ENSMUSG00000044060.11|RIKEN cDNA A830010M20 gene 	ENSMUST00000060553.7|A830010M20Rik|ENSMUSG00000044060.11|RIKEN cDNA A830010M20 gene
mm10_v2_chr18_-_24603464_24603530	0.0227249	Hoxd1	ENSMUST00000154205.1|Slc39a6|ENSMUSG00000024270.5|solute carrier family 39 (metal ion transporter), member 6
mm10_v2_chr19_-_56389877_56390043	0.0225179	Hoxd1	ENSMUST00000166203.1|Nrap|ENSMUSG00000049134.9|nebulin-related anchoring protein 	ENSMUST00000167239.1|Nrap|ENSMUSG00000049134.9|nebulin-related anchoring protein 	ENSMUST00000040711.8|Nrap|ENSMUSG00000049134.9|nebulin-related anchoring protein 	ENSMUST00000095947.4|Nrap|ENSMUSG00000049134.9|nebulin-related anchoring protein 	ENSMUST00000073536.6|Nrap|ENSMUSG00000049134.9|nebulin-related anchoring protein
mm10_v2_chr2_+_164613519_164613529	0.0220829	Hoxd1	ENSMUST00000094346.2|Wfdc6b|ENSMUSG00000070531.4|WAP four-disulfide core domain 6B
mm10_v2_chr6_-_57535422_57535447	0.0217897	Hoxd1	ENSMUST00000042766.3|Ppm1k|ENSMUSG00000037826.3|protein phosphatase 1K (PP2C domain containing)
mm10_v2_chr12_+_72441852_72441866	0.0206799	Hoxd1	ENSMUST00000162159.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr16_+_34690548_34690616	0.0201186	Hoxd1	ENSMUST00000023532.6|Ccdc14|ENSMUSG00000022833.6|coiled-coil domain containing 14
mm10_v2_chr11_-_6267718_6267772	0.0175588	Hoxd1	ENSMUST00000004507.4|Ddx56|ENSMUSG00000004393.4|DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 	ENSMUST00000151446.1|Ddx56|ENSMUSG00000004393.4|DEAD (Asp-Glu-Ala-Asp) box polypeptide 56
mm10_v2_chrX_-_75578188_75578247	0.0173075	Hoxd1	ENSMUST00000033545.5|Rab39b|ENSMUSG00000031202.5|RAB39B, member RAS oncogene family
mm10_v2_chr11_-_99230998_99231019	0.0171854	Hoxd1	ENSMUST00000103133.3|Smarce1|ENSMUSG00000037935.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
mm10_v2_chr19_-_6067785_6067865	0.0162296	Hoxd1	ENSMUST00000162575.1|Tm7sf2|ENSMUSG00000024799.8|transmembrane 7 superfamily member 2 	ENSMUST00000159084.1|Tm7sf2|ENSMUSG00000024799.8|transmembrane 7 superfamily member 2 	ENSMUST00000161718.1|Tm7sf2|ENSMUSG00000024799.8|transmembrane 7 superfamily member 2 	ENSMUST00000162810.1|Tm7sf2|ENSMUSG00000024799.8|transmembrane 7 superfamily member 2 	ENSMUST00000025713.5|Tm7sf2|ENSMUSG00000024799.8|transmembrane 7 superfamily member 2 	ENSMUST00000113543.2|Tm7sf2|ENSMUSG00000024799.8|transmembrane 7 superfamily member 2 	ENSMUST00000161528.1|Tm7sf2|ENSMUSG00000024799.8|transmembrane 7 superfamily member 2
mm10_v2_chr15_-_101892916_101892921	0.0156562	Hoxd1	ENSMUST00000100179.1|Krt76|ENSMUSG00000075402.1|keratin 76
mm10_v2_chr13_-_56895737_56895793	0.01515	Hoxd1	ENSMUST00000022023.6|Trpc7|ENSMUSG00000021541.7|transient receptor potential cation channel, subfamily C, member 7 	ENSMUST00000109871.1|Trpc7|ENSMUSG00000021541.7|transient receptor potential cation channel, subfamily C, member 7
mm10_v2_chr1_-_37916485_37916499	0.0140813	Hoxd1	ENSMUST00000078307.5|Lyg2|ENSMUSG00000061584.5|lysozyme G-like 2
mm10_v2_chr2_-_168767029_168767104	0.0138883	Hoxd1	ENSMUST00000075044.3|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila)
mm10_v2_chr4_-_130359915_130359966	0.0130558	Hoxd1	ENSMUST00000134159.2|Zcchc17|ENSMUSG00000028772.13|zinc finger, CCHC domain containing 17
mm10_v2_chr16_+_52031549_52031570	0.0127387	Hoxd1	ENSMUST00000114471.1|Cblb|ENSMUSG00000022637.10|Casitas B-lineage lymphoma b
mm10_v2_chr14_+_25980039_25980039	0.0111339	Hoxd1	ENSMUST00000173155.1|Duxbl1|ENSMUSG00000048502.8|double homeobox B-like 1
mm10_v2_chr6_-_128275577_128275577	0.0107565	Hoxd1	ENSMUST00000130454.1|Tead4|ENSMUSG00000030353.9|TEA domain family member 4
mm10_v2_chr18_+_24603952_24603972	0.0102254	Hoxd1	ENSMUST00000025120.6|Elp2|ENSMUSG00000024271.7|elongator acetyltransferase complex subunit 2
mm10_v2_chr9_+_66797039_66797039	0.00972834	Hoxd1	ENSMUST00000098612.2|Gm10647|ENSMUSG00000074232.2|predicted gene 10647
mm10_v2_chr15_-_25149072_25149159	0.00941592	Hoxd1	ENSMUST00000056401.4|9230109A22Rik|ENSMUSG00000051237.6|RIKEN cDNA 9230109A22 gene
mm10_v2_chr13_+_24802020_24802020	0.00923612	Hoxd1	ENSMUST00000155575.1|BC005537|ENSMUSG00000019132.4|cDNA sequence BC005537
mm10_v2_chr5_-_63968867_63968905	0.00843273	Hoxd1	ENSMUST00000154169.1|Rell1|ENSMUSG00000047881.8|RELT-like 1
mm10_v2_chr8_+_113635787_113635842	0.00825588	Hoxd1	ENSMUST00000035777.8|Mon1b|ENSMUSG00000078908.3|MON1 homolog b (yeast)
mm10_v2_chr11_+_87109221_87109239	0.00811818	Hoxd1	ENSMUST00000020794.5|Ska2|ENSMUSG00000020492.5|spindle and kinetochore associated complex subunit 2
mm10_v2_chr14_+_26119811_26119811	0.00801872	Hoxd1	ENSMUST00000173617.1|Duxbl2|ENSMUSG00000072675.6|doubl homeobox B-like 2
mm10_v2_chrM_+_7759_7927	0.00625919	Hoxd1	ENSMUST00000082407.1|mt-Atp8|ENSMUSG00000064356.3|mitochondrially encoded ATP synthase 8 	ENSMUST00000082408.1|mt-Atp6|ENSMUSG00000064357.1|mitochondrially encoded ATP synthase 6
mm10_v2_chr10_-_110000219_110000219	0.0044916	Hoxd1	ENSMUST00000032719.7|Nav3|ENSMUSG00000020181.9|neuron navigator 3
mm10_v2_chrM_+_8600_8616	0.00434793	Hoxd1	ENSMUST00000082409.1|mt-Co3|ENSMUSG00000064358.1|mitochondrially encoded cytochrome c oxidase III
mm10_v2_chr18_+_12741324_12741355	0.00350088	Hoxd1	ENSMUST00000115857.2|Cabyr|ENSMUSG00000024430.7|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 	ENSMUST00000121018.1|Cabyr|ENSMUSG00000024430.7|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 	ENSMUST00000119108.1|Cabyr|ENSMUSG00000024430.7|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)
mm10_v2_chr7_+_100159241_100159315	0.00320172	Hoxd1	ENSMUST00000032967.3|Lipt2|ENSMUSG00000030725.3|lipoyl(octanoyl) transferase 2 (putative)
mm10_v2_chr15_+_38661904_38661981	0.0030355	Hoxd1	ENSMUST00000022904.6|Atp6v1c1|ENSMUSG00000022295.7|ATPase, H+ transporting, lysosomal V1 subunit C1
mm10_v2_chr2_+_69822370_69822511	0.00299216	Hoxd1	ENSMUST00000053087.3|Klhl23|ENSMUSG00000042155.3|kelch-like 23
mm10_v2_chr2_+_109917639_109917656	0.001225	Hoxd1	ENSMUST00000046548.7|Lgr4|ENSMUSG00000050199.7|leucine-rich repeat-containing G protein-coupled receptor 4 	ENSMUST00000111037.2|Lgr4|ENSMUSG00000050199.7|leucine-rich repeat-containing G protein-coupled receptor 4
mm10_v2_chr11_-_107337556_107337637	0.000419197	Hoxd1	ENSMUST00000040380.6|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
