mm10_v2_chr10_-_53647080_53647080	0.66751	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000169866.1|Fam184a|ENSMUSG00000019856.7|family with sequence similarity 184, member A
mm10_v2_chr2_-_116067391_116067444	0.594141	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000140185.1|2700033N17Rik|ENSMUSG00000086328.1|RIKEN cDNA 2700033N17 gene
mm10_v2_chr15_+_101473472_101473478	0.583024	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000088049.3|Krt86|ENSMUSG00000067614.4|keratin 86
mm10_v2_chr11_-_100762928_100762936	0.43659	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000107360.2|Hcrt|ENSMUSG00000045471.4|hypocretin 	ENSMUST00000055083.3|Hcrt|ENSMUSG00000045471.4|hypocretin
mm10_v2_chr10_+_39612934_39612934	0.420898	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000019987.6|Traf3ip2|ENSMUSG00000019842.6|TRAF3 interacting protein 2
mm10_v2_chr8_+_54954728_54954820	0.407672	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000033915.7|Gpm6a|ENSMUSG00000031517.7|glycoprotein m6a
mm10_v2_chr5_-_134747241_134747264	0.40453	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000015138.9|Eln|ENSMUSG00000029675.9|elastin
mm10_v2_chr3_-_49757257_49757316	0.404227	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000035931.7|Pcdh18|ENSMUSG00000037892.8|protocadherin 18
mm10_v2_chr16_-_42340595_42340651	0.305123	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000102817.4|Gap43|ENSMUSG00000047261.9|growth associated protein 43
mm10_v2_chr13_-_78196373_78196440	0.300117	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000125176.2|Nr2f1|ENSMUSG00000069171.7|nuclear receptor subfamily 2, group F, member 1
mm10_v2_chr6_+_15196949_15197102	0.29882	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000151301.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000131414.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000140557.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000115469.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr10_+_99263224_99263240	0.293004	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000020118.4|Dusp6|ENSMUSG00000019960.7|dual specificity phosphatase 6
mm10_v2_chr2_+_127909058_127909058	0.241664	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110344.1|Acoxl|ENSMUSG00000027380.4|acyl-Coenzyme A oxidase-like
mm10_v2_chr17_+_35533194_35533208	0.20615	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000025273.8|Psors1c2|ENSMUSG00000024409.8|psoriasis susceptibility 1 candidate 2 (human)
mm10_v2_chr6_-_116716888_116716923	0.200378	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000056623.6|Tmem72|ENSMUSG00000048108.7|transmembrane protein 72
mm10_v2_chr3_-_116253467_116253484	0.198869	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000090473.5|Gpr88|ENSMUSG00000068696.5|G-protein coupled receptor 88
mm10_v2_chr1_+_104768510_104768529	0.196382	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000062528.8|Cdh20|ENSMUSG00000050840.8|cadherin 20
mm10_v2_chr11_-_98053415_98053467	0.190278	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000017544.2|Stac2|ENSMUSG00000017400.4|SH3 and cysteine rich domain 2
mm10_v2_chr17_+_45734506_45734630	0.185402	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000180558.1|F630040K05Rik|ENSMUSG00000097727.1|RIKEN cDNA F630040K05 gene
mm10_v2_chr10_+_73821857_73821883	0.178108	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000177128.1|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000064562.7|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000129404.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000105426.3|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000131321.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000126920.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000147189.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000105424.3|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000092420.6|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000105429.3|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000131724.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000152655.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000151116.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000155701.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000152819.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000125517.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000124046.1|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000149977.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000146682.1|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000177107.1|Pcdh15|ENSMUSG00000052613.10|protocadherin 15
mm10_v2_chr6_+_125552948_125552980	0.177103	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000112254.1|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog 	ENSMUST00000112253.1|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog 	ENSMUST00000001995.7|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog
mm10_v2_chr18_+_23415400_23415454	0.17436	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000115832.2|Dtna|ENSMUSG00000024302.9|dystrobrevin alpha 	ENSMUST00000047954.7|Dtna|ENSMUSG00000024302.9|dystrobrevin alpha
mm10_v2_chr5_-_53707532_53707704	0.161662	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000031093.3|Cckar|ENSMUSG00000029193.4|cholecystokinin A receptor
mm10_v2_chr5_-_62766153_62766246	0.147397	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000076623.4|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr5_+_138187485_138187521	0.144644	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110934.2|Cnpy4|ENSMUSG00000036968.9|canopy 4 homolog (zebrafish)
mm10_v2_chr9_+_43310763_43310806	0.143614	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000034511.5|Trim29|ENSMUSG00000032013.5|tripartite motif-containing 29
mm10_v2_chr2_-_168767029_168767104	0.138928	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000075044.3|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila)
mm10_v2_chr3_+_66219909_66219927	0.135689	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000029421.5|Ptx3|ENSMUSG00000027832.5|pentraxin related gene
mm10_v2_chr19_+_26749726_26749877	0.132143	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000175842.1|Smarca2|ENSMUSG00000024921.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm10_v2_chr7_-_66427469_66427517	0.122052	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000015278.7|Aldh1a3|ENSMUSG00000015134.8|aldehyde dehydrogenase family 1, subfamily A3
mm10_v2_chr14_+_27000362_27000507	0.121748	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000035433.8|Hesx1|ENSMUSG00000040726.8|homeobox gene expressed in ES cells
mm10_v2_chr6_+_115931922_115931937	0.115249	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000032471.6|Rho|ENSMUSG00000030324.6|rhodopsin
mm10_v2_chr2_+_152754156_152754186	0.113571	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000010020.5|Cox4i2|ENSMUSG00000009876.7|cytochrome c oxidase subunit IV isoform 2
mm10_v2_chr18_-_37969742_37969782	0.111134	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000166148.1|Fchsd1|ENSMUSG00000038524.7|FCH and double SH3 domains 1 	ENSMUST00000163131.1|Fchsd1|ENSMUSG00000038524.7|FCH and double SH3 domains 1 	ENSMUST00000043437.7|Fchsd1|ENSMUSG00000038524.7|FCH and double SH3 domains 1
mm10_v2_chr3_+_90600203_90600219	0.103236	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000001047.7|S100a3|ENSMUSG00000001021.8|S100 calcium binding protein A3
mm10_v2_chr2_-_72813665_72813717	0.101917	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000136807.1|6430710C18Rik|ENSMUSG00000085427.1|RIKEN cDNA 6430710C18 gene 	ENSMUST00000148327.1|6430710C18Rik|ENSMUSG00000085427.1|RIKEN cDNA 6430710C18 gene
mm10_v2_chr2_+_116067213_116067250	0.101685	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000152412.1|G630016G05Rik|ENSMUSG00000086308.1|RIKEN cDNA G630016G05 gene
mm10_v2_chr5_-_123141067_123141094	0.10053	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000162697.1|AI480526|ENSMUSG00000090086.1|expressed sequence AI480526 	ENSMUST00000160321.1|AI480526|ENSMUSG00000090086.1|expressed sequence AI480526 	ENSMUST00000159637.1|AI480526|ENSMUSG00000090086.1|expressed sequence AI480526
mm10_v2_chr2_+_125136692_125136769	0.0996226	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000099452.2|Ctxn2|ENSMUSG00000074872.2|cortexin 2
mm10_v2_chr8_-_36953139_36953160	0.0972822	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000179501.1|Dlc1|ENSMUSG00000031523.10|deleted in liver cancer 1
mm10_v2_chr16_-_57754707_57754737	0.0965323	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000089332.4|Col8a1|ENSMUSG00000068196.4|collagen, type VIII, alpha 1
mm10_v2_chr3_-_55055038_55055055	0.09632	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000029368.2|Ccna1|ENSMUSG00000027793.2|cyclin A1
mm10_v2_chr18_+_77332394_77332394	0.0936377	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000148341.1|Loxhd1|ENSMUSG00000032818.9|lipoxygenase homology domains 1
mm10_v2_chr6_+_123262107_123262185	0.0925931	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000032240.2|Clec4d|ENSMUSG00000030144.2|C-type lectin domain family 4, member d
mm10_v2_chr5_+_34999111_34999184	0.0907427	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114283.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr4_+_19280850_19280907	0.088528	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000102999.1|Cngb3|ENSMUSG00000056494.7|cyclic nucleotide gated channel beta 3
mm10_v2_chr17_-_49564262_49564337	0.086798	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000057610.6|Daam2|ENSMUSG00000040260.7|dishevelled associated activator of morphogenesis 2
mm10_v2_chr9_-_61372187_61372211	0.083136	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000098658.2|Gm10655|ENSMUSG00000074256.2|predicted gene 10655
mm10_v2_chr17_+_69439326_69439326	0.0804191	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000169935.1|A330050F15Rik|ENSMUSG00000091636.1|RIKEN cDNA A330050F15 gene
mm10_v2_chr8_-_84662841_84662859	0.077794	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000060427.4|Ier2|ENSMUSG00000053560.4|immediate early response 2
mm10_v2_chr11_+_60537978_60538074	0.0752161	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000044250.3|Alkbh5|ENSMUSG00000042650.3|alkB, alkylation repair homolog 5 (E. coli)
mm10_v2_chr2_+_27165233_27165233	0.0737428	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000000910.6|Dbh|ENSMUSG00000000889.8|dopamine beta hydroxylase
mm10_v2_chr16_-_97170707_97170759	0.0709733	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000056102.7|Dscam|ENSMUSG00000050272.9|Down syndrome cell adhesion molecule
mm10_v2_chr9_-_103222063_103222149	0.0702289	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000170904.1|Trf|ENSMUSG00000032554.9|transferrin
mm10_v2_chr5_+_104202609_104202624	0.069044	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000066708.5|Dmp1|ENSMUSG00000029307.6|dentin matrix protein 1
mm10_v2_chr7_+_126950687_126950729	0.068989	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000106333.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2
mm10_v2_chr12_+_111814170_111814245	0.0682149	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000021714.7|Zfyve21|ENSMUSG00000021286.7|zinc finger, FYVE domain containing 21
mm10_v2_chr7_+_126950837_126950966	0.0669574	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000106332.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2
mm10_v2_chr5_+_34999070_34999086	0.0631358	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114280.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr7_+_28881656_28881718	0.060642	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000066880.4|Capn12|ENSMUSG00000054083.7|calpain 12
mm10_v2_chr16_+_45093611_45093622	0.0600594	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000099498.2|Ccdc80|ENSMUSG00000022665.8|coiled-coil domain containing 80
mm10_v2_chr14_-_108914237_108914257	0.0600587	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000100322.2|Slitrk1|ENSMUSG00000075478.2|SLIT and NTRK-like family, member 1
mm10_v2_chr10_-_25200110_25200178	0.0594976	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000100012.2|Akap7|ENSMUSG00000039166.9|A kinase (PRKA) anchor protein 7
mm10_v2_chr8_-_3625274_3625288	0.0570496	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000004749.6|Pcp2|ENSMUSG00000004630.12|Purkinje cell protein 2 (L7)
mm10_v2_chr9_+_119063429_119063467	0.0562097	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000141185.1|Vill|ENSMUSG00000038775.8|villin-like 	ENSMUST00000126251.1|Vill|ENSMUSG00000038775.8|villin-like 	ENSMUST00000136561.1|Vill|ENSMUSG00000038775.8|villin-like
mm10_v2_chr19_-_7966000_7966037	0.0558433	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000182102.1|Slc22a27|ENSMUSG00000067656.7|solute carrier family 22, member 27 	ENSMUST00000075619.4|Slc22a27|ENSMUSG00000067656.7|solute carrier family 22, member 27
mm10_v2_chr9_+_45370185_45370208	0.0558329	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000085939.6|Fxyd6|ENSMUSG00000066705.6|FXYD domain-containing ion transport regulator 6
mm10_v2_chr6_-_138421379_138421452	0.0535083	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000163065.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3
mm10_v2_chr8_-_120228221_120228297	0.0530414	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000183235.1|A330074K22Rik|ENSMUSG00000097960.1|RIKEN cDNA A330074K22 gene
mm10_v2_chr12_-_91849081_91849157	0.0524806	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000167466.1|Sel1l|ENSMUSG00000020964.8|sel-1 suppressor of lin-12-like (C. elegans) 	ENSMUST00000021347.5|Sel1l|ENSMUSG00000020964.8|sel-1 suppressor of lin-12-like (C. elegans) 	ENSMUST00000178462.1|Sel1l|ENSMUSG00000020964.8|sel-1 suppressor of lin-12-like (C. elegans)
mm10_v2_chr17_+_17402672_17402771	0.0513563	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000115576.2|Lix1|ENSMUSG00000047786.12|limb expression 1 homolog (chicken)
mm10_v2_chr7_+_43781054_43781078	0.0512651	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000014058.9|Klk10|ENSMUSG00000030693.9|kallikrein related-peptidase 10
mm10_v2_chr3_+_108092789_108092880	0.0509248	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000058669.8|Gnat2|ENSMUSG00000009108.9|guanine nucleotide binding protein, alpha transducing 2 	ENSMUST00000145101.1|Gnat2|ENSMUSG00000009108.9|guanine nucleotide binding protein, alpha transducing 2
mm10_v2_chr8_+_121116163_121116177	0.0508903	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000054691.6|Foxc2|ENSMUSG00000046714.6|forkhead box C2
mm10_v2_chr10_+_102159000_102159079	0.0495001	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000020039.6|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
mm10_v2_chr12_-_57546121_57546141	0.0479682	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000044380.6|Foxa1|ENSMUSG00000035451.6|forkhead box A1
mm10_v2_chr3_-_59220150_59220259	0.046626	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000170388.1|P2ry12|ENSMUSG00000036353.7|purinergic receptor P2Y, G-protein coupled 12
mm10_v2_chr19_-_5560570_5560582	0.046546	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000025861.1|Ovol1|ENSMUSG00000024922.1|OVO homolog-like 1 (Drosophila)
mm10_v2_chr7_-_45103747_45103822	0.0465274	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000003512.7|Fcgrt|ENSMUSG00000003420.7|Fc receptor, IgG, alpha chain transporter
mm10_v2_chr15_-_13173607_13173644	0.0460273	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000036439.4|Cdh6|ENSMUSG00000039385.4|cadherin 6
mm10_v2_chr3_-_94412883_94412890	0.0459581	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000181305.1|1700040D17Rik|ENSMUSG00000097515.1|RIKEN cDNA 1700040D17 gene
mm10_v2_chrX_-_95658416_95658509	0.0449468	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000044382.6|Zc4h2|ENSMUSG00000035062.7|zinc finger, C4H2 domain containing
mm10_v2_chr4_-_129558355_129558378	0.0447857	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000167288.1|Lck|ENSMUSG00000000409.8|lymphocyte protein tyrosine kinase 	ENSMUST00000134336.1|Lck|ENSMUSG00000000409.8|lymphocyte protein tyrosine kinase
mm10_v2_chr4_-_129558387_129558398	0.0440693	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000067240.4|Lck|ENSMUSG00000000409.8|lymphocyte protein tyrosine kinase
mm10_v2_chr13_-_23574196_23574229	0.0431331	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000105106.1|Hist1h2bf|ENSMUSG00000069268.4|histone cluster 1, H2bf
mm10_v2_chr6_+_63255971_63256036	0.0428383	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000159561.1|Grid2|ENSMUSG00000071424.3|glutamate receptor, ionotropic, delta 2 	ENSMUST00000095852.3|Grid2|ENSMUSG00000071424.3|glutamate receptor, ionotropic, delta 2
mm10_v2_chr13_-_18382041_18382041	0.0424146	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000139064.2|Pou6f2|ENSMUSG00000009734.11|POU domain, class 6, transcription factor 2 	ENSMUST00000175703.2|Pou6f2|ENSMUSG00000009734.11|POU domain, class 6, transcription factor 2
mm10_v2_chr13_+_55399648_55399700	0.0420323	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000057167.7|Slc34a1|ENSMUSG00000021490.10|solute carrier family 34 (sodium phosphate), member 1
mm10_v2_chr5_-_137684665_137684729	0.0412608	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000100544.4|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2 	ENSMUST00000031736.9|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2 	ENSMUST00000151839.1|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2
mm10_v2_chr11_+_102604370_102604435	0.0410436	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000057893.5|Fzd2|ENSMUSG00000050288.5|frizzled homolog 2 (Drosophila)
mm10_v2_chr2_+_78051155_78051181	0.0409766	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000145972.1|4930440I19Rik|ENSMUSG00000085431.1|RIKEN cDNA 4930440I19 gene
mm10_v2_chrX_+_160768179_160768183	0.0408847	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000112368.2|Rs1|ENSMUSG00000031293.7|retinoschisis (X-linked, juvenile) 1 (human)
mm10_v2_chr3_+_151437887_151437914	0.0402575	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000046977.7|Eltd1|ENSMUSG00000039167.7|EGF, latrophilin seven transmembrane domain containing 1
mm10_v2_chr3_+_55461758_55461961	0.0402045	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000070418.4|Dclk1|ENSMUSG00000027797.9|doublecortin-like kinase 1
mm10_v2_chr8_-_3625025_3625049	0.0401308	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000133459.1|Pcp2|ENSMUSG00000004630.12|Purkinje cell protein 2 (L7)
mm10_v2_chr8_-_3624989_3625014	0.0396348	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000142431.1|Pcp2|ENSMUSG00000004630.12|Purkinje cell protein 2 (L7)
mm10_v2_chr12_-_83487708_83487729	0.0391233	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000177959.1|Dpf3|ENSMUSG00000021221.9|D4, zinc and double PHD fingers, family 3 	ENSMUST00000178756.1|Dpf3|ENSMUSG00000021221.9|D4, zinc and double PHD fingers, family 3
mm10_v2_chr8_+_4238733_4238767	0.0384848	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110998.2|Map2k7|ENSMUSG00000002948.12|mitogen-activated protein kinase kinase 7 	ENSMUST00000062686.4|Map2k7|ENSMUSG00000002948.12|mitogen-activated protein kinase kinase 7
mm10_v2_chr6_+_29859374_29859381	0.0379473	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000115238.3|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2
mm10_v2_chrX_-_95658379_95658390	0.037861	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000119640.1|Zc4h2|ENSMUSG00000035062.7|zinc finger, C4H2 domain containing
mm10_v2_chr6_+_37870786_37870882	0.0375044	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000120428.1|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24 	ENSMUST00000031859.7|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24
mm10_v2_chrX_-_95658392_95658412	0.037499	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000120620.1|Zc4h2|ENSMUSG00000035062.7|zinc finger, C4H2 domain containing
mm10_v2_chr17_+_75005523_75005568	0.0366586	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000001927.5|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1
mm10_v2_chr18_+_37819543_37819570	0.0357846	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000055935.5|Pcdhga9|ENSMUSG00000023036.8|protocadherin gamma subfamily A, 9
mm10_v2_chr17_-_45733843_45733848	0.0350908	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000178179.1|1600014C23Rik|ENSMUSG00000094690.1|RIKEN cDNA 1600014C23 gene
mm10_v2_chr2_+_106693185_106693278	0.0343387	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000111063.1|Mpped2|ENSMUSG00000016386.9|metallophosphoesterase domain containing 2
mm10_v2_chr8_-_3625541_3625548	0.0341839	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000136105.1|Pcp2|ENSMUSG00000004630.12|Purkinje cell protein 2 (L7)
mm10_v2_chr4_+_5724304_5724357	0.0331016	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000108380.1|Fam110b|ENSMUSG00000049119.8|family with sequence similarity 110, member B
mm10_v2_chrX_-_75416533_75416555	0.0330948	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000033542.4|Mtcp1|ENSMUSG00000031200.10|mature T cell proliferation 1
mm10_v2_chr7_+_126950518_126950584	0.0329063	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000106335.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2 	ENSMUST00000146017.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2
mm10_v2_chr15_-_67113909_67113992	0.0324566	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000092640.5|St3gal1|ENSMUSG00000013846.9|ST3 beta-galactoside alpha-2,3-sialyltransferase 1
mm10_v2_chr4_-_58206596_58206616	0.0324406	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000042850.8|Svep1|ENSMUSG00000028369.9|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
mm10_v2_chr2_-_45117349_45117395	0.03233	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000176438.2|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr1_-_79440039_79440090	0.0319174	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000049972.4|Scg2|ENSMUSG00000050711.6|secretogranin II
mm10_v2_chr2_+_69219971_69220005	0.0318538	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000005364.5|G6pc2|ENSMUSG00000005232.5|glucose-6-phosphatase, catalytic, 2 	ENSMUST00000112317.2|G6pc2|ENSMUSG00000005232.5|glucose-6-phosphatase, catalytic, 2
mm10_v2_chr7_+_30763750_30763765	0.0318365	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000165887.1|Dmkn|ENSMUSG00000060962.6|dermokine 	ENSMUST00000085691.4|Dmkn|ENSMUSG00000060962.6|dermokine 	ENSMUST00000085688.4|Dmkn|ENSMUSG00000060962.6|dermokine 	ENSMUST00000054427.6|Dmkn|ENSMUSG00000060962.6|dermokine
mm10_v2_chr6_-_115592571_115592599	0.0317608	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000112957.1|2510049J12Rik|ENSMUSG00000068011.4|RIKEN cDNA 2510049J12 gene
mm10_v2_chr12_+_74297474_74297474	0.0315305	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000072100.3|Dbpht2|ENSMUSG00000029878.5|DNA binding protein with his-thr domain
mm10_v2_chr4_-_35845204_35845204	0.0312619	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000164772.1|Lingo2|ENSMUSG00000045083.8|leucine rich repeat and Ig domain containing 2 	ENSMUST00000065173.2|Lingo2|ENSMUSG00000045083.8|leucine rich repeat and Ig domain containing 2
mm10_v2_chr11_+_66911981_66912003	0.0310352	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000123434.2|Pirt|ENSMUSG00000048070.4|phosphoinositide-interacting regulator of transient receptor potential channels
mm10_v2_chr5_-_150518164_150518164	0.0309938	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000118769.1|Zar1l|ENSMUSG00000056586.8|zygote arrest 1-like
mm10_v2_chr5_-_122989260_122989306	0.0307195	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000118027.1|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr2_-_168767136_168767201	0.0300462	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000029061.5|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila) 	ENSMUST00000103074.1|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila)
mm10_v2_chr5_-_122989086_122989111	0.029135	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000046073.9|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr3_+_159839729_159839745	0.0279948	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000068952.5|Wls|ENSMUSG00000028173.6|wntless homolog (Drosophila)
mm10_v2_chr6_-_128275577_128275577	0.0279747	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000130454.1|Tead4|ENSMUSG00000030353.9|TEA domain family member 4
mm10_v2_chr10_+_102158858_102158889	0.0279257	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000138522.1|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative) 	ENSMUST00000163753.1|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative) 	ENSMUST00000138016.1|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
mm10_v2_chr17_+_12119274_12119348	0.0274225	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000024594.2|Agpat4|ENSMUSG00000023827.2|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)
mm10_v2_chr12_+_31438209_31438227	0.0267205	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000001254.5|Slc26a3|ENSMUSG00000001225.6|solute carrier family 26, member 3
mm10_v2_chr11_-_97700327_97700497	0.0264784	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000018681.7|Pcgf2|ENSMUSG00000018537.10|polycomb group ring finger 2
mm10_v2_chr12_-_111813834_111813858	0.0262273	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000021715.5|Xrcc3|ENSMUSG00000021287.6|X-ray repair complementing defective repair in Chinese hamster cells 3
mm10_v2_chr10_+_127420867_127420916	0.0257278	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000064793.6|R3hdm2|ENSMUSG00000025404.9|R3H domain containing 2
mm10_v2_chr1_-_152625212_152625220	0.0255326	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000027760.7|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1
mm10_v2_chr17_-_90088343_90088373	0.0254787	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000173917.1|Nrxn1|ENSMUSG00000024109.12|neurexin I
mm10_v2_chr9_+_118478182_118478212	0.0251423	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000111763.1|Eomes|ENSMUSG00000032446.8|eomesodermin homolog (Xenopus laevis)
mm10_v2_chr10_+_127898515_127898532	0.0238325	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000047134.7|Sdr9c7|ENSMUSG00000040127.7|4short chain dehydrogenase/reductase family 9C, member 7
mm10_v2_chr6_+_8948608_8948619	0.0237109	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000160300.1|Nxph1|ENSMUSG00000046178.3|neurexophilin 1
mm10_v2_chr10_+_59403644_59403669	0.0235847	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000009790.7|Pla2g12b|ENSMUSG00000009646.7|phospholipase A2, group XIIB
mm10_v2_chr6_+_124304646_124304671	0.023365	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000112541.2|Cd163|ENSMUSG00000008845.3|CD163 antigen 	ENSMUST00000032234.2|Cd163|ENSMUSG00000008845.3|CD163 antigen
mm10_v2_chr15_-_101763504_101763566	0.0231726	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000088018.3|Krt74|ENSMUSG00000067596.3|keratin 74
mm10_v2_chr9_+_61372359_61372383	0.0229393	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000178113.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000159386.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl)
mm10_v2_chr2_-_103283760_103283802	0.0217	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000111174.1|Ehf|ENSMUSG00000012350.9|ets homologous factor
mm10_v2_chr8_+_107031218_107031229	0.0211969	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000034388.9|Vps4a|ENSMUSG00000031913.9|vacuolar protein sorting 4a (yeast)
mm10_v2_chr5_-_122988533_122988705	0.0201082	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000086200.4|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B 	ENSMUST00000156474.1|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr4_+_150853919_150854050	0.0199443	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000073600.2|Errfi1|ENSMUSG00000028967.4|ERBB receptor feedback inhibitor 1
mm10_v2_chr1_+_132298606_132298631	0.0197855	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000046071.4|Klhdc8a|ENSMUSG00000042115.4|kelch domain containing 8A
mm10_v2_chr11_+_116843278_116843278	0.0197555	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000106370.3|Mettl23|ENSMUSG00000090266.4|methyltransferase like 23
mm10_v2_chr15_+_21111452_21111452	0.0197435	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000075132.6|Cdh12|ENSMUSG00000040452.8|cadherin 12
mm10_v2_chr14_-_79771305_79771318	0.0192015	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000039568.5|Pcdh8|ENSMUSG00000036422.5|protocadherin 8
mm10_v2_chrX_+_166344692_166344770	0.0191066	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000112223.1|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b 	ENSMUST00000112224.1|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b 	ENSMUST00000112229.2|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b 	ENSMUST00000112228.1|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b 	ENSMUST00000112227.2|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b 	ENSMUST00000112226.2|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b
mm10_v2_chr2_+_22622183_22622205	0.0188571	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000028123.3|Gad2|ENSMUSG00000026787.3|glutamic acid decarboxylase 2
mm10_v2_chr6_-_99266494_99266540	0.0186229	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000113326.2|Foxp1|ENSMUSG00000030067.11|forkhead box P1
mm10_v2_chr5_-_137531204_137531297	0.018318	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000150063.2|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2
mm10_v2_chr7_+_102210335_102210445	0.0180409	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000140631.1|Pgap2|ENSMUSG00000030990.11|post-GPI attachment to proteins 2 	ENSMUST00000120879.1|Pgap2|ENSMUSG00000030990.11|post-GPI attachment to proteins 2 	ENSMUST00000146996.1|Pgap2|ENSMUSG00000030990.11|post-GPI attachment to proteins 2
mm10_v2_chr4_+_19818722_19818743	0.0170058	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000035890.7|Slc7a13|ENSMUSG00000041052.8|solute carrier family 7, (cationic amino acid transporter, y+ system) member 13
mm10_v2_chr19_-_14598031_14598088	0.0167769	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000167776.2|Tle4|ENSMUSG00000024642.10|transducin-like enhancer of split 4, homolog of Drosophila E(spl)
mm10_v2_chr2_+_86007778_86007778	0.016751	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000062166.1|Olfr1032|ENSMUSG00000042796.1|olfactory receptor 1032
mm10_v2_chr18_+_9707639_9707661	0.0166962	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000040069.8|Colec12|ENSMUSG00000036103.8|collectin sub-family member 12
mm10_v2_chr1_-_172027251_172027268	0.0165652	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000138714.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr3_+_96268654_96268683	0.0161306	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000098843.2|Hist2h3b|ENSMUSG00000074403.2|histone cluster 2, H3b
mm10_v2_chr12_+_38783503_38783527	0.0159467	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000159334.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr3_-_72967854_72967869	0.015904	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000167334.1|Sis|ENSMUSG00000027790.8|sucrase isomaltase (alpha-glucosidase)
mm10_v2_chr12_+_72441933_72441970	0.0152211	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000161284.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr15_+_92597104_92597121	0.0148822	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000035399.8|Pdzrn4|ENSMUSG00000036218.9|PDZ domain containing RING finger 4
mm10_v2_chr10_+_88885992_88886010	0.0143838	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000020255.6|Slc5a8|ENSMUSG00000020062.6|solute carrier family 5 (iodide transporter), member 8
mm10_v2_chr8_+_4238815_4238886	0.0141923	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000003027.7|Map2k7|ENSMUSG00000002948.12|mitogen-activated protein kinase kinase 7 	ENSMUST00000110999.1|Map2k7|ENSMUSG00000002948.12|mitogen-activated protein kinase kinase 7
mm10_v2_chrX_-_139871637_139871677	0.0139234	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000033811.7|Morc4|ENSMUSG00000031434.9|microrchidia 4 	ENSMUST00000087401.5|Morc4|ENSMUSG00000031434.9|microrchidia 4
mm10_v2_chr13_+_23574381_23574449	0.0137212	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000090776.4|Hist1h2ad|ENSMUSG00000071478.4|histone cluster 1, H2ad
mm10_v2_chr4_+_97777780_97777834	0.0132593	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000107062.2|Nfia|ENSMUSG00000028565.12|nuclear factor I/A 	ENSMUST00000052018.5|Nfia|ENSMUSG00000028565.12|nuclear factor I/A 	ENSMUST00000107057.1|Nfia|ENSMUSG00000028565.12|nuclear factor I/A
mm10_v2_chr2_+_70474923_70474923	0.0130937	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000100043.2|Sp5|ENSMUSG00000075304.2|trans-acting transcription factor 5
mm10_v2_chr11_+_52098681_52098796	0.0126711	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000020608.2|Ppp2ca|ENSMUSG00000020349.4|protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform
mm10_v2_chr13_+_89540636_89540678	0.0125644	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000022108.7|Hapln1|ENSMUSG00000021613.8|hyaluronan and proteoglycan link protein 1
mm10_v2_chr8_-_87959560_87959595	0.012364	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000109655.2|Zfp423|ENSMUSG00000045333.9|zinc finger protein 423
mm10_v2_chr1_-_4360256_4360314	0.0122334	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000027032.4|Rp1|ENSMUSG00000025900.5|retinitis pigmentosa 1 (human)
mm10_v2_chr7_-_102116705_102116719	0.0119474	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000084830.1|Chrna10|ENSMUSG00000066279.2|cholinergic receptor, nicotinic, alpha polypeptide 10
mm10_v2_chr18_+_84851338_84851429	0.0119373	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000160180.1|Cyb5|ENSMUSG00000024646.7|cytochrome b-5
mm10_v2_chr3_+_61364507_61364633	0.0117094	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000049064.2|Rap2b|ENSMUSG00000036894.2|RAP2B, member of RAS oncogene family
mm10_v2_chr4_+_21848039_21848077	0.0116741	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000098238.2|Sfrs18|ENSMUSG00000028248.9|serine/arginine-rich splicing factor 18 	ENSMUST00000108229.1|Sfrs18|ENSMUSG00000028248.9|serine/arginine-rich splicing factor 18
mm10_v2_chr13_-_73678005_73678026	0.011542	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000022105.7|Slc6a18|ENSMUSG00000021612.8|solute carrier family 6 (neurotransmitter transporter), member 18 	ENSMUST00000109680.2|Slc6a18|ENSMUSG00000021612.8|solute carrier family 6 (neurotransmitter transporter), member 18 	ENSMUST00000109679.2|Slc6a18|ENSMUSG00000021612.8|solute carrier family 6 (neurotransmitter transporter), member 18
mm10_v2_chr16_-_95586585_95586595	0.0113092	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000077773.6|Erg|ENSMUSG00000040732.12|avian erythroblastosis virus E-26 (v-ets) oncogene related
mm10_v2_chr8_-_84846860_84846934	0.0111822	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000003912.6|Calr|ENSMUSG00000003814.8|calreticulin
mm10_v2_chrM_+_8600_8616	0.0110059	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000082409.1|mt-Co3|ENSMUSG00000064358.1|mitochondrially encoded cytochrome c oxidase III
mm10_v2_chr5_+_34999046_34999069	0.0108518	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114281.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr16_-_4880284_4880315	0.0108445	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000037843.6|Ubald1|ENSMUSG00000039568.6|UBA-like domain containing 1
mm10_v2_chr15_+_28203726_28203752	0.0104144	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000067048.6|Dnah5|ENSMUSG00000022262.7|dynein, axonemal, heavy chain 5
mm10_v2_chr2_+_74697663_74697680	0.0102974	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000059272.8|Hoxd9|ENSMUSG00000043342.8|homeobox D9
mm10_v2_chr2_-_6721890_6721928	0.0101954	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114927.2|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr18_-_56975333_56975376	0.00940969	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000139243.2|C330018D20Rik|ENSMUSG00000024592.9|RIKEN cDNA C330018D20 gene 	ENSMUST00000025488.8|C330018D20Rik|ENSMUSG00000024592.9|RIKEN cDNA C330018D20 gene
mm10_v2_chr2_+_109917639_109917656	0.00928859	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000046548.7|Lgr4|ENSMUSG00000050199.7|leucine-rich repeat-containing G protein-coupled receptor 4 	ENSMUST00000111037.2|Lgr4|ENSMUSG00000050199.7|leucine-rich repeat-containing G protein-coupled receptor 4
mm10_v2_chr6_-_30958990_30958990	0.00921907	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000101589.3|Klf14|ENSMUSG00000073209.3|Kruppel-like factor 14
mm10_v2_chr12_+_72441852_72441866	0.00918465	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000162159.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr10_+_127421124_127421203	0.00915622	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000170336.1|R3hdm2|ENSMUSG00000025404.9|R3H domain containing 2
mm10_v2_chr19_+_24673998_24674017	0.0090264	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000057243.4|Tmem252|ENSMUSG00000048572.4|transmembrane protein 252
mm10_v2_chr17_-_29007925_29007962	0.00894898	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000009138.5|Stk38|ENSMUSG00000024006.10|serine/threonine kinase 38 	ENSMUST00000119274.1|Stk38|ENSMUSG00000024006.10|serine/threonine kinase 38
mm10_v2_chr12_-_21417591_21417637	0.00879432	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000135088.1|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm10_v2_chr18_+_24603952_24603972	0.00840828	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000025120.6|Elp2|ENSMUSG00000024271.7|elongator acetyltransferase complex subunit 2
mm10_v2_chr13_+_42680565_42680623	0.0083511	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000128646.1|Phactr1|ENSMUSG00000054728.10|phosphatase and actin regulator 1
mm10_v2_chr7_+_64501949_64502048	0.00820391	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000138829.1|Apba2|ENSMUSG00000030519.8|amyloid beta (A4) precursor protein-binding, family A, member 2
mm10_v2_chr15_+_81744848_81744848	0.00814159	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000109554.1|Zc3h7b|ENSMUSG00000022390.10|zinc finger CCCH type containing 7B
mm10_v2_chr12_+_21417872_21417911	0.007517	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000180671.1|Gm4419|ENSMUSG00000097055.1|predicted gene 4419
mm10_v2_chr12_-_21417526_21417588	0.00665824	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000049531.9|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide 	ENSMUST00000155480.1|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm10_v2_chr18_-_24603791_24603843	0.00621767	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000070726.3|Slc39a6|ENSMUSG00000024270.5|solute carrier family 39 (metal ion transporter), member 6
mm10_v2_chr5_-_23616528_23616597	0.00616121	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000088392.4|Srpk2|ENSMUSG00000062604.7|serine/arginine-rich protein specific kinase 2
mm10_v2_chr17_-_31198958_31198976	0.00590802	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114549.2|Tmprss3|ENSMUSG00000024034.6|transmembrane protease, serine 3
mm10_v2_chr1_-_126738167_126738230	0.00584931	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000160693.1|Nckap5|ENSMUSG00000049690.9|NCK-associated protein 5
mm10_v2_chr7_-_5014645_5014697	0.00545289	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000165320.1|Fiz1|ENSMUSG00000061374.7|Flt3 interacting zinc finger protein 1
mm10_v2_chr17_+_45506825_45506857	0.00501354	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000024733.7|Aars2|ENSMUSG00000023938.7|alanyl-tRNA synthetase 2, mitochondrial (putative)
mm10_v2_chr7_-_99141068_99141149	0.00481723	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000037968.8|Uvrag|ENSMUSG00000035354.8|UV radiation resistance associated gene
mm10_v2_chr17_-_34305715_34305728	0.00459688	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000174074.1|Gm20513|ENSMUSG00000092415.1|predicted gene 20513
mm10_v2_chr4_+_154964117_154964147	0.00456241	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000030931.4|Pank4|ENSMUSG00000029056.7|pantothenate kinase 4 	ENSMUST00000070953.4|Pank4|ENSMUSG00000029056.7|pantothenate kinase 4
mm10_v2_chr1_-_150466165_150466236	0.00448888	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000162367.1|Prg4|ENSMUSG00000006014.10|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein) 	ENSMUST00000161611.1|Prg4|ENSMUSG00000006014.10|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein) 	ENSMUST00000161320.1|Prg4|ENSMUSG00000006014.10|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein) 	ENSMUST00000159035.1|Prg4|ENSMUSG00000006014.10|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)
mm10_v2_chr5_+_14025305_14025327	0.00422774	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000073957.6|Sema3e|ENSMUSG00000063531.6|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E
mm10_v2_chr8_-_62123106_62123123	0.00404468	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000034052.6|Anxa10|ENSMUSG00000031635.7|annexin A10 	ENSMUST00000034054.7|Anxa10|ENSMUSG00000031635.7|annexin A10
mm10_v2_chr13_+_80883403_80883422	0.00404076	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000099356.2|Arrdc3|ENSMUSG00000074794.3|arrestin domain containing 3
mm10_v2_chr16_+_13358375_13358439	0.00396361	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000149359.1|Mkl2|ENSMUSG00000009569.8|MKL/myocardin-like 2
mm10_v2_chr11_-_77188968_77188968	0.00389098	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000108400.1|Efcab5|ENSMUSG00000050944.8|EF-hand calcium binding domain 5
mm10_v2_chr18_-_24603464_24603530	0.00380966	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000154205.1|Slc39a6|ENSMUSG00000024270.5|solute carrier family 39 (metal ion transporter), member 6
mm10_v2_chr10_+_88146992_88147037	0.0037829	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000052355.7|Nup37|ENSMUSG00000035351.9|nucleoporin 37
mm10_v2_chr11_-_99244058_99244136	0.00378094	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000103132.3|Krt222|ENSMUSG00000035849.8|keratin 222 	ENSMUST00000038214.6|Krt222|ENSMUSG00000035849.8|keratin 222
mm10_v2_chr4_+_114821722_114821722	0.00345139	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000137570.1|Gm12830|ENSMUSG00000055198.3|predicted gene 12830
mm10_v2_chr7_+_64502090_64502155	0.00331079	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000137732.1|Apba2|ENSMUSG00000030519.8|amyloid beta (A4) precursor protein-binding, family A, member 2
mm10_v2_chr15_-_66812593_66812649	0.0032475	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000100572.3|Sla|ENSMUSG00000022372.8|src-like adaptor
mm10_v2_chr19_-_14597983_14598016	0.0025644	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000052011.7|Tle4|ENSMUSG00000024642.10|transducin-like enhancer of split 4, homolog of Drosophila E(spl)
mm10_v2_chr4_+_116720920_116721004	0.0024375	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000045542.6|Tesk2|ENSMUSG00000033985.11|testis-specific kinase 2 	ENSMUST00000106459.1|Tesk2|ENSMUSG00000033985.11|testis-specific kinase 2
mm10_v2_chr19_+_25672408_25672420	0.00216604	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000053068.5|Dmrt2|ENSMUSG00000048138.9|doublesex and mab-3 related transcription factor 2
mm10_v2_chr7_-_44986313_44986492	0.00182388	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000045325.6|Prmt1|ENSMUSG00000052429.11|protein arginine N-methyltransferase 1 	ENSMUST00000085387.4|Prmt1|ENSMUSG00000052429.11|protein arginine N-methyltransferase 1 	ENSMUST00000107840.1|Prmt1|ENSMUSG00000052429.11|protein arginine N-methyltransferase 1 	ENSMUST00000107843.3|Prmt1|ENSMUSG00000052429.11|protein arginine N-methyltransferase 1 	ENSMUST00000107842.3|Prmt1|ENSMUSG00000052429.11|protein arginine N-methyltransferase 1
mm10_v2_chr18_+_56432116_56432163	0.00155512	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000070166.5|Gramd3|ENSMUSG00000001700.9|GRAM domain containing 3
mm10_v2_chr3_-_146682410_146682522	0.00155394	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000124931.1|Samd13|ENSMUSG00000048652.6|sterile alpha motif domain containing 13 	ENSMUST00000147113.1|Samd13|ENSMUSG00000048652.6|sterile alpha motif domain containing 13
mm10_v2_chr8_-_45382198_45382291	0.0013924	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000093526.6|Fam149a|ENSMUSG00000070044.9|family with sequence similarity 149, member A
mm10_v2_chr2_-_77703252_77703272	0.00128459	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000171063.1|Zfp385b|ENSMUSG00000027016.11|zinc finger protein 385B
mm10_v2_chr1_-_172027269_172027313	0.00122269	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000027837.6|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila) 	ENSMUST00000111264.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr17_-_29888570_29888629	0.000919234	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000171691.1|Mdga1|ENSMUSG00000043557.9|MAM domain containing glycosylphosphatidylinositol anchor 1
mm10_v2_chr7_+_123123870_123123901	0.000710076	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000094053.5|Tnrc6a|ENSMUSG00000052707.7|trinucleotide repeat containing 6a
mm10_v2_chr12_+_109545390_109545443	0.000263416	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000146701.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3
mm10_v2_chr10_+_82859198_82859217	0.00025192	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000020484.6|Txnrd1|ENSMUSG00000020250.9|thioredoxin reductase 1
mm10_v2_chr7_+_25681158_25681158	0.000140283	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000108403.3|B9d2|ENSMUSG00000063439.6|B9 protein domain 2
mm10_v2_chr2_+_20737306_20737321	4.06177e-05	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114606.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4 	ENSMUST00000114608.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4
mm10_v2_chr2_-_28916668_28916668	1.05822e-05	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000113847.1|Barhl1|ENSMUSG00000026805.8|BarH-like 1 (Drosophila)
