mm10_v2_chr9_-_45204083_45204106	3.42987	Nanog	ENSMUST00000034599.8|Tmprss4|ENSMUSG00000032091.8|transmembrane protease, serine 4
mm10_v2_chr3_+_105870898_105870912	3.38129	Nanog	ENSMUST00000010279.5|Adora3|ENSMUSG00000074344.2|adenosine A3 receptor
mm10_v2_chr1_-_158814469_158814469	2.37805	Nanog	ENSMUST00000161589.2|Pappa2|ENSMUSG00000073530.5|pappalysin 2
mm10_v2_chr17_+_21691860_21691860	2.15828	Nanog	ENSMUST00000072133.4|Gm10226|ENSMUSG00000067929.3|predicted gene 10226
mm10_v2_chr15_+_9436028_9436083	1.97533	Nanog	ENSMUST00000042360.3|Capsl|ENSMUSG00000039676.3|calcyphosine-like
mm10_v2_chr11_-_109298121_109298142	1.78242	Nanog	ENSMUST00000020920.3|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr11_-_109298066_109298079	1.59451	Nanog	ENSMUST00000106706.1|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr12_+_24651346_24651409	1.52994	Nanog	ENSMUST00000020982.5|Klf11|ENSMUSG00000020653.5|Kruppel-like factor 11
mm10_v2_chr11_-_109298090_109298118	1.36576	Nanog	ENSMUST00000106704.2|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr4_-_49549523_49549546	1.29591	Nanog	ENSMUST00000029987.9|Aldob|ENSMUSG00000028307.9|aldolase B, fructose-bisphosphate
mm10_v2_chr4_-_42661893_42661893	1.24895	Nanog	ENSMUST00000108006.3|Il11ra2|ENSMUSG00000078735.3|interleukin 11 receptor, alpha chain 2
mm10_v2_chr8_-_90908415_90908415	1.21074	Nanog	ENSMUST00000098517.1|Gm6658|ENSMUSG00000074171.1|predicted gene 6658
mm10_v2_chr6_+_80018877_80018945	1.15055	Nanog	ENSMUST00000147663.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000128718.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000126005.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000133918.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4
mm10_v2_chrX_+_8271133_8271179	1.10641	Nanog	ENSMUST00000127103.1|Slc38a5|ENSMUSG00000031170.8|solute carrier family 38, member 5 	ENSMUST00000115591.1|Slc38a5|ENSMUSG00000031170.8|solute carrier family 38, member 5
mm10_v2_chr12_-_69790660_69790735	1.0866	Nanog	ENSMUST00000021377.4|Cdkl1|ENSMUSG00000020990.4|cyclin-dependent kinase-like 1 (CDC2-related kinase)
mm10_v2_chr6_+_80019008_80019048	1.04723	Nanog	ENSMUST00000126399.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000136421.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4
mm10_v2_chrX_-_135009185_135009225	1.04329	Nanog	ENSMUST00000113185.2|Zmat1|ENSMUSG00000052676.10|zinc finger, matrin type 1 	ENSMUST00000064659.5|Zmat1|ENSMUSG00000052676.10|zinc finger, matrin type 1
mm10_v2_chr8_-_89044162_89044195	1.0399	Nanog	ENSMUST00000034090.6|Sall1|ENSMUSG00000031665.6|sal-like 1 (Drosophila)
mm10_v2_chrX_+_8271381_8271453	1.02923	Nanog	ENSMUST00000033512.4|Slc38a5|ENSMUSG00000031170.8|solute carrier family 38, member 5
mm10_v2_chr6_+_41392356_41392380	1.00367	Nanog	ENSMUST00000049079.7|Gm5771|ENSMUSG00000058119.5|predicted gene 5771
mm10_v2_chr13_-_92131494_92131680	0.977267	Nanog	ENSMUST00000099326.3|Rasgrf2|ENSMUSG00000021708.10|RAS protein-specific guanine nucleotide-releasing factor 2 	ENSMUST00000146492.1|Rasgrf2|ENSMUSG00000021708.10|RAS protein-specific guanine nucleotide-releasing factor 2
mm10_v2_chr10_-_127121125_127121160	0.966493	Nanog	ENSMUST00000164259.1|Os9|ENSMUSG00000040462.6|amplified in osteosarcoma 	ENSMUST00000080975.4|Os9|ENSMUSG00000040462.6|amplified in osteosarcoma
mm10_v2_chr11_+_115154139_115154194	0.948437	Nanog	ENSMUST00000021076.5|Rab37|ENSMUSG00000020732.7|RAB37, member of RAS oncogene family
mm10_v2_chr7_-_25754701_25754750	0.938169	Nanog	ENSMUST00000108401.1|Hnrnpul1|ENSMUSG00000040725.7|heterogeneous nuclear ribonucleoprotein U-like 1 	ENSMUST00000043765.7|Hnrnpul1|ENSMUSG00000040725.7|heterogeneous nuclear ribonucleoprotein U-like 1
mm10_v2_chr11_-_58529984_58529984	0.920998	Nanog	ENSMUST00000062869.2|Olfr330|ENSMUSG00000050818.3|olfactory receptor 330
mm10_v2_chr5_+_135168283_135168373	0.919021	Nanog	ENSMUST00000031692.5|Bcl7b|ENSMUSG00000029681.6|B cell CLL/lymphoma 7B
mm10_v2_chr7_-_142679533_142679726	0.916133	Nanog	ENSMUST00000162317.1|Ins2|ENSMUSG00000000215.4|insulin II 	ENSMUST00000125933.1|Ins2|ENSMUSG00000000215.4|insulin II 	ENSMUST00000105931.1|Ins2|ENSMUSG00000000215.4|insulin II 	ENSMUST00000105930.1|Ins2|ENSMUSG00000000215.4|insulin II 	ENSMUST00000105933.1|Ins2|ENSMUSG00000000215.4|insulin II 	ENSMUST00000105932.1|Ins2|ENSMUSG00000000215.4|insulin II 	ENSMUST00000000220.2|Ins2|ENSMUSG00000000215.4|insulin II
mm10_v2_chr3_-_54915867_54915887	0.91091	Nanog	ENSMUST00000070342.3|Sertm1|ENSMUSG00000056306.5|serine rich and transmembrane domain containing 1
mm10_v2_chr10_+_121641588_121641588	0.910772	Nanog	ENSMUST00000142501.1|D930020B18Rik|ENSMUSG00000047642.8|RIKEN cDNA D930020B18 gene
mm10_v2_chr9_+_21835506_21835516	0.900989	Nanog	ENSMUST00000058777.6|Gm6484|ENSMUSG00000047822.7|predicted gene 6484
mm10_v2_chr3_+_105870858_105870895	0.877867	Nanog	ENSMUST00000164730.1|Adora3|ENSMUSG00000000562.4|adenosine A3 receptor
mm10_v2_chr6_+_41458923_41458936	0.875374	Nanog	ENSMUST00000031910.7|Prss1|ENSMUSG00000062751.5|protease, serine, 1 (trypsin 1)
mm10_v2_chr10_+_34483400_34483445	0.875326	Nanog	ENSMUST00000019913.7|Frk|ENSMUSG00000019779.8|fyn-related kinase 	ENSMUST00000170771.1|Frk|ENSMUSG00000019779.8|fyn-related kinase
mm10_v2_chr18_-_21652362_21652373	0.86192	Nanog	ENSMUST00000049105.4|Klhl14|ENSMUSG00000042514.5|kelch-like 14
mm10_v2_chr6_-_124779686_124779742	0.856119	Nanog	ENSMUST00000147669.1|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000128697.1|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000032218.3|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000112475.2|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23
mm10_v2_chr18_-_35215008_35215033	0.853121	Nanog	ENSMUST00000091636.3|Lrrtm2|ENSMUSG00000071862.2|leucine rich repeat transmembrane neuronal 2
mm10_v2_chr5_+_135168382_135168442	0.852243	Nanog	ENSMUST00000111187.3|Bcl7b|ENSMUSG00000029681.6|B cell CLL/lymphoma 7B 	ENSMUST00000111188.1|Bcl7b|ENSMUSG00000029681.6|B cell CLL/lymphoma 7B
mm10_v2_chr4_-_63154130_63154173	0.825091	Nanog	ENSMUST00000030041.4|Ambp|ENSMUSG00000028356.4|alpha 1 microglobulin/bikunin
mm10_v2_chrX_+_8271642_8271790	0.824412	Nanog	ENSMUST00000115590.1|Slc38a5|ENSMUSG00000031170.8|solute carrier family 38, member 5
mm10_v2_chr9_+_21955747_21955769	0.821835	Nanog	ENSMUST00000053583.5|Swsap1|ENSMUSG00000051238.5|SWIM type zinc finger 7 associated protein 1
mm10_v2_chr19_-_36736653_36736670	0.814079	Nanog	ENSMUST00000087321.2|Ppp1r3c|ENSMUSG00000067279.2|protein phosphatase 1, regulatory (inhibitor) subunit 3C
mm10_v2_chrX_+_49470450_49470548	0.81276	Nanog	ENSMUST00000114904.3|Arhgap36|ENSMUSG00000036198.6|Rho GTPase activating protein 36
mm10_v2_chr14_+_65970610_65970621	0.793858	Nanog	ENSMUST00000127387.1|Clu|ENSMUSG00000022037.8|clusterin
mm10_v2_chr4_+_115088708_115088769	0.774458	Nanog	ENSMUST00000171877.1|Pdzk1ip1|ENSMUSG00000028716.9|PDZK1 interacting protein 1 	ENSMUST00000177647.1|Pdzk1ip1|ENSMUSG00000028716.9|PDZK1 interacting protein 1 	ENSMUST00000106548.2|Pdzk1ip1|ENSMUSG00000028716.9|PDZK1 interacting protein 1 	ENSMUST00000030488.2|Pdzk1ip1|ENSMUSG00000028716.9|PDZK1 interacting protein 1
mm10_v2_chr6_-_136922169_136922198	0.769095	Nanog	ENSMUST00000032343.6|Erp27|ENSMUSG00000030219.7|endoplasmic reticulum protein 27
mm10_v2_chr10_+_121641794_121641872	0.748631	Nanog	ENSMUST00000120642.1|D930020B18Rik|ENSMUSG00000047642.8|RIKEN cDNA D930020B18 gene 	ENSMUST00000132744.1|D930020B18Rik|ENSMUSG00000047642.8|RIKEN cDNA D930020B18 gene
mm10_v2_chr3_-_37312418_37312465	0.747536	Nanog	ENSMUST00000075537.6|Cetn4|ENSMUSG00000045031.12|centrin 4 	ENSMUST00000071400.6|Cetn4|ENSMUSG00000045031.12|centrin 4 	ENSMUST00000102955.4|Cetn4|ENSMUSG00000045031.12|centrin 4 	ENSMUST00000140956.1|Cetn4|ENSMUSG00000045031.12|centrin 4
mm10_v2_chr4_-_43046196_43046220	0.74543	Nanog	ENSMUST00000036462.5|Fam214b|ENSMUSG00000036002.6|family with sequence similarity 214, member B
mm10_v2_chr13_+_12565868_12565883	0.741693	Nanog	ENSMUST00000071973.6|Ero1lb|ENSMUSG00000057069.6|ERO1-like beta (S. cerevisiae)
mm10_v2_chr10_-_109010955_109010983	0.708028	Nanog	ENSMUST00000105276.1|Syt1|ENSMUSG00000035864.8|synaptotagmin I 	ENSMUST00000064054.7|Syt1|ENSMUSG00000035864.8|synaptotagmin I
mm10_v2_chr5_-_137684665_137684729	0.699676	Nanog	ENSMUST00000100544.4|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2 	ENSMUST00000031736.9|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2 	ENSMUST00000151839.1|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2
mm10_v2_chr12_-_20900867_20900867	0.694597	Nanog	ENSMUST00000079237.5|Zfp125|ENSMUSG00000069755.4|zinc finger protein 125
mm10_v2_chr4_-_58553553_58553898	0.675063	Nanog	ENSMUST00000107575.2|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1 	ENSMUST00000107574.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1 	ENSMUST00000147354.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1
mm10_v2_chr15_+_39745926_39745937	0.673154	Nanog	ENSMUST00000022913.4|Dcstamp|ENSMUSG00000022303.8|dentrocyte expressed seven transmembrane protein
mm10_v2_chr12_+_108334341_108334406	0.670145	Nanog	ENSMUST00000021684.4|Cyp46a1|ENSMUSG00000021259.4|cytochrome P450, family 46, subfamily a, polypeptide 1
mm10_v2_chr3_+_89421619_89421642	0.666713	Nanog	ENSMUST00000094378.3|Shc1|ENSMUSG00000042626.7|src homology 2 domain-containing transforming protein C1 	ENSMUST00000137793.1|Shc1|ENSMUSG00000042626.7|src homology 2 domain-containing transforming protein C1
mm10_v2_chrX_+_49470555_49470579	0.662072	Nanog	ENSMUST00000042444.6|Arhgap36|ENSMUSG00000036198.6|Rho GTPase activating protein 36
mm10_v2_chr17_+_23660477_23660525	0.657135	Nanog	ENSMUST00000062967.8|Ccdc64b|ENSMUSG00000043782.8|coiled-coil domain containing 64B
mm10_v2_chr17_-_57247632_57247694	0.641441	Nanog	ENSMUST00000005975.6|Gpr108|ENSMUSG00000005823.8|G protein-coupled receptor 108
mm10_v2_chr8_+_84415348_84415392	0.640175	Nanog	ENSMUST00000121390.1|Cacna1a|ENSMUSG00000034656.10|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit 	ENSMUST00000122053.1|Cacna1a|ENSMUSG00000034656.10|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
mm10_v2_chr11_+_69088490_69088553	0.636502	Nanog	ENSMUST00000021273.6|Vamp2|ENSMUSG00000020894.10|vesicle-associated membrane protein 2 	ENSMUST00000117780.1|Vamp2|ENSMUSG00000020894.10|vesicle-associated membrane protein 2
mm10_v2_chr12_+_109549157_109549301	0.630761	Nanog	ENSMUST00000128458.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3 	ENSMUST00000150851.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3
mm10_v2_chr14_+_65970804_65970903	0.620216	Nanog	ENSMUST00000138191.1|Clu|ENSMUSG00000022037.8|clusterin
mm10_v2_chr2_-_181581996_181582008	0.613654	Nanog	ENSMUST00000057816.8|Uckl1|ENSMUSG00000089917.1|uridine-cytidine kinase 1-like 1
mm10_v2_chrX_-_153037549_153037581	0.613011	Nanog	ENSMUST00000051484.3|Mageh1|ENSMUSG00000047238.3|melanoma antigen, family H, 1
mm10_v2_chr11_+_66911981_66912003	0.605434	Nanog	ENSMUST00000123434.2|Pirt|ENSMUSG00000048070.4|phosphoinositide-interacting regulator of transient receptor potential channels
mm10_v2_chr4_-_46650102_46650209	0.601965	Nanog	ENSMUST00000084621.5|Tbc1d2|ENSMUSG00000039813.8|TBC1 domain family, member 2 	ENSMUST00000107750.1|Tbc1d2|ENSMUSG00000039813.8|TBC1 domain family, member 2
mm10_v2_chr14_+_65971049_65971074	0.601283	Nanog	ENSMUST00000128539.1|Clu|ENSMUSG00000022037.8|clusterin
mm10_v2_chr1_-_182282218_182282239	0.594197	Nanog	ENSMUST00000133052.1|Degs1|ENSMUSG00000038633.5|degenerative spermatocyte homolog 1 (Drosophila)
mm10_v2_chr6_+_8259288_8259312	0.586072	Nanog	ENSMUST00000159335.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039
mm10_v2_chr2_-_116067391_116067444	0.575868	Nanog	ENSMUST00000140185.1|2700033N17Rik|ENSMUSG00000086328.1|RIKEN cDNA 2700033N17 gene
mm10_v2_chr12_+_69790288_69790288	0.573328	Nanog	ENSMUST00000021378.3|4930512B01Rik|ENSMUSG00000020992.3|RIKEN cDNA 4930512B01 gene
mm10_v2_chr1_-_87101590_87101617	0.57114	Nanog	ENSMUST00000113270.2|Alpi|ENSMUSG00000079440.2|alkaline phosphatase, intestinal
mm10_v2_chr2_-_140066661_140066805	0.56498	Nanog	ENSMUST00000046656.2|Tasp1|ENSMUSG00000039033.5|taspase, threonine aspartase 1 	ENSMUST00000099304.3|Tasp1|ENSMUSG00000039033.5|taspase, threonine aspartase 1 	ENSMUST00000110079.2|Tasp1|ENSMUSG00000039033.5|taspase, threonine aspartase 1
mm10_v2_chr1_+_174501796_174501843	0.558056	Nanog	ENSMUST00000030039.7|Fmn2|ENSMUSG00000028354.8|formin 2
mm10_v2_chr10_+_127898515_127898532	0.557507	Nanog	ENSMUST00000047134.7|Sdr9c7|ENSMUSG00000040127.7|4short chain dehydrogenase/reductase family 9C, member 7
mm10_v2_chr4_+_12906838_12906881	0.545119	Nanog	ENSMUST00000143186.1|Triqk|ENSMUSG00000055963.6|triple QxxK/R motif containing 	ENSMUST00000183345.1|Triqk|ENSMUSG00000055963.6|triple QxxK/R motif containing
mm10_v2_chr5_-_103977360_103977403	0.53443	Nanog	ENSMUST00000048118.8|Hsd17b13|ENSMUSG00000034528.9|hydroxysteroid (17-beta) dehydrogenase 13
mm10_v2_chr10_+_75037066_75037100	0.533723	Nanog	ENSMUST00000147802.1|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family 	ENSMUST00000020391.5|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family
mm10_v2_chr11_+_46404720_46404730	0.521149	Nanog	ENSMUST00000063166.5|Fam71b|ENSMUSG00000020401.6|family with sequence similarity 71, member B
mm10_v2_chr1_+_74362108_74362156	0.51936	Nanog	ENSMUST00000097697.1|Gm216|ENSMUSG00000073650.2|predicted gene 216
mm10_v2_chr6_+_125145235_125145251	0.516515	Nanog	ENSMUST00000119527.1|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1 	ENSMUST00000088276.6|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1 	ENSMUST00000051171.7|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1 	ENSMUST00000117675.1|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1
mm10_v2_chr15_+_99392882_99392903	0.508628	Nanog	ENSMUST00000023749.8|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr17_+_35552128_35552182	0.507068	Nanog	ENSMUST00000044804.7|Cdsn|ENSMUSG00000039518.7|corneodesmosin
mm10_v2_chr6_+_125552948_125552980	0.50296	Nanog	ENSMUST00000112254.1|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog 	ENSMUST00000112253.1|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog 	ENSMUST00000001995.7|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog
mm10_v2_chr16_+_20696175_20696211	0.499579	Nanog	ENSMUST00000128273.1|Fam131a|ENSMUSG00000050821.7|family with sequence similarity 131, member A
mm10_v2_chr12_+_109747903_109748051	0.497964	Nanog	ENSMUST00000183084.1|Mirg|ENSMUSG00000097391.2|miRNA containing gene 	ENSMUST00000182300.1|Mirg|ENSMUSG00000097391.2|miRNA containing gene
mm10_v2_chr17_+_7170101_7170132	0.497446	Nanog	ENSMUST00000024575.6|Rps6ka2|ENSMUSG00000023809.9|ribosomal protein S6 kinase, polypeptide 2
mm10_v2_chr15_+_80255184_80255263	0.494512	Nanog	ENSMUST00000109605.3|Atf4|ENSMUSG00000042406.7|activating transcription factor 4
mm10_v2_chr14_+_73237891_73238007	0.493308	Nanog	ENSMUST00000044405.6|Lpar6|ENSMUSG00000033446.6|lysophosphatidic acid receptor 6
mm10_v2_chr17_+_25736040_25736040	0.491281	Nanog	ENSMUST00000047098.5|Mslnl|ENSMUSG00000041062.6|mesothelin-like
mm10_v2_chr18_+_37518341_37518359	0.48199	Nanog	ENSMUST00000097609.1|Pcdhb22|ENSMUSG00000073591.3|protocadherin beta 22
mm10_v2_chr6_-_116716888_116716923	0.479172	Nanog	ENSMUST00000056623.6|Tmem72|ENSMUSG00000048108.7|transmembrane protein 72
mm10_v2_chr6_+_41354105_41354185	0.471465	Nanog	ENSMUST00000072103.5|Try10|ENSMUSG00000071521.3|trypsin 10
mm10_v2_chr15_+_99392948_99393022	0.463583	Nanog	ENSMUST00000161250.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6 	ENSMUST00000160635.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6 	ENSMUST00000161778.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr6_+_41302265_41302279	0.463362	Nanog	ENSMUST00000031913.4|Try4|ENSMUSG00000054106.7|trypsin 4
mm10_v2_chr19_-_56822161_56822220	0.456865	Nanog	ENSMUST00000118592.1|A630007B06Rik|ENSMUSG00000035173.8|RIKEN cDNA A630007B06 gene
mm10_v2_chr2_+_173153048_173153080	0.452404	Nanog	ENSMUST00000029017.5|Pck1|ENSMUSG00000027513.5|phosphoenolpyruvate carboxykinase 1, cytosolic
mm10_v2_chr3_-_88552859_88553024	0.451887	Nanog	ENSMUST00000119002.1|Lamtor2|ENSMUSG00000028062.9|late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 	ENSMUST00000029698.8|Lamtor2|ENSMUSG00000028062.9|late endosomal/lysosomal adaptor, MAPK and MTOR activator 2
mm10_v2_chr4_+_43058939_43058969	0.447388	Nanog	ENSMUST00000079978.6|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans)
mm10_v2_chr3_-_146499721_146499803	0.446584	Nanog	ENSMUST00000029839.4|Spata1|ENSMUSG00000028188.7|spermatogenesis associated 1
mm10_v2_chr15_+_99393219_99393248	0.439387	Nanog	ENSMUST00000159209.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr2_+_164948219_164948245	0.43722	Nanog	ENSMUST00000017881.2|Mmp9|ENSMUSG00000017737.2|matrix metallopeptidase 9
mm10_v2_chr2_-_167062981_167063048	0.435932	Nanog	ENSMUST00000048988.7|Znfx1|ENSMUSG00000039501.8|zinc finger, NFX1-type containing 1
mm10_v2_chr7_+_128246953_128246993	0.431696	Nanog	ENSMUST00000167965.1|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1
mm10_v2_chr5_+_19907502_19907551	0.427911	Nanog	ENSMUST00000101558.3|Magi2|ENSMUSG00000040003.11|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm10_v2_chr10_+_39612934_39612934	0.42704	Nanog	ENSMUST00000019987.6|Traf3ip2|ENSMUSG00000019842.6|TRAF3 interacting protein 2
mm10_v2_chr4_-_149454971_149454986	0.418375	Nanog	ENSMUST00000030848.2|Rbp7|ENSMUSG00000028996.3|retinol binding protein 7, cellular
mm10_v2_chrX_+_159840463_159840481	0.417379	Nanog	ENSMUST00000112451.1|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1 	ENSMUST00000112453.2|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1
mm10_v2_chr15_+_34453285_34453312	0.415363	Nanog	ENSMUST00000060894.7|BC030476|ENSMUSG00000044726.7|cDNA sequence BC030476
mm10_v2_chr11_-_59839745_59839763	0.413157	Nanog	ENSMUST00000141415.1|Cops3|ENSMUSG00000019373.5|COP9 (constitutive photomorphogenic) homolog, subunit 3 (Arabidopsis thaliana)
mm10_v2_chr15_+_76246747_76246807	0.412388	Nanog	ENSMUST00000023225.6|Grina|ENSMUSG00000022564.6|glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)
mm10_v2_chr14_-_78536762_78536851	0.411545	Nanog	ENSMUST00000123853.1|Akap11|ENSMUSG00000022016.9|A kinase (PRKA) anchor protein 11
mm10_v2_chr12_-_72408934_72409054	0.408582	Nanog	ENSMUST00000078505.7|Rtn1|ENSMUSG00000021087.11|reticulon 1
mm10_v2_chr6_+_8259379_8259460	0.405982	Nanog	ENSMUST00000162034.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039 	ENSMUST00000160705.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039 	ENSMUST00000159433.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039
mm10_v2_chr3_+_105904377_105904423	0.40534	Nanog	ENSMUST00000000574.1|Adora3|ENSMUSG00000000562.4|adenosine A3 receptor
mm10_v2_chr11_-_70646972_70647058	0.39415	Nanog	ENSMUST00000014750.8|Slc25a11|ENSMUSG00000014606.8|solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11
mm10_v2_chr12_+_35047180_35047230	0.392936	Nanog	ENSMUST00000048519.9|Snx13|ENSMUSG00000020590.9|sorting nexin 13 	ENSMUST00000163677.1|Snx13|ENSMUSG00000020590.9|sorting nexin 13
mm10_v2_chr7_-_133702515_133702616	0.384347	Nanog	ENSMUST00000153698.1|Uros|ENSMUSG00000030979.6|uroporphyrinogen III synthase
mm10_v2_chr17_+_8849974_8850001	0.383149	Nanog	ENSMUST00000115720.1|Pde10a|ENSMUSG00000023868.9|phosphodiesterase 10A
mm10_v2_chr11_-_101171302_101171353	0.382041	Nanog	ENSMUST00000164474.1|Plekhh3|ENSMUSG00000035172.9|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3 	ENSMUST00000043397.7|Plekhh3|ENSMUSG00000035172.9|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3
mm10_v2_chr17_-_59013264_59013372	0.378181	Nanog	ENSMUST00000174122.1|Nudt12|ENSMUSG00000024228.6|nudix (nucleoside diphosphate linked moiety X)-type motif 12 	ENSMUST00000025065.5|Nudt12|ENSMUSG00000024228.6|nudix (nucleoside diphosphate linked moiety X)-type motif 12
mm10_v2_chr4_+_43059028_43059080	0.377725	Nanog	ENSMUST00000163653.1|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans) 	ENSMUST00000107952.2|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans) 	ENSMUST00000107953.2|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans)
mm10_v2_chr9_+_54538984_54538993	0.374312	Nanog	ENSMUST00000060242.5|Sh2d7|ENSMUSG00000046460.8|SH2 domain containing 7 	ENSMUST00000118413.1|Sh2d7|ENSMUSG00000046460.8|SH2 domain containing 7
mm10_v2_chr12_-_83921899_83921934	0.374031	Nanog	ENSMUST00000117217.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila)
mm10_v2_chr15_-_97247287_97247315	0.373606	Nanog	ENSMUST00000053106.5|Amigo2|ENSMUSG00000048218.5|adhesion molecule with Ig like domain 2
mm10_v2_chr10_+_59403644_59403669	0.373089	Nanog	ENSMUST00000009790.7|Pla2g12b|ENSMUSG00000009646.7|phospholipase A2, group XIIB
mm10_v2_chr6_-_124829398_124829484	0.371428	Nanog	ENSMUST00000142058.1|Usp5|ENSMUSG00000038429.4|ubiquitin specific peptidase 5 (isopeptidase T) 	ENSMUST00000122110.1|Usp5|ENSMUSG00000038429.4|ubiquitin specific peptidase 5 (isopeptidase T) 	ENSMUST00000047510.3|Usp5|ENSMUSG00000038429.4|ubiquitin specific peptidase 5 (isopeptidase T)
mm10_v2_chr10_+_26772477_26772515	0.369212	Nanog	ENSMUST00000039557.7|Arhgap18|ENSMUSG00000039031.9|Rho GTPase activating protein 18
mm10_v2_chr4_+_136310991_136311054	0.368985	Nanog	ENSMUST00000084219.5|Hnrnpr|ENSMUSG00000066037.8|heterogeneous nuclear ribonucleoprotein R
mm10_v2_chr7_+_107209439_107209451	0.364497	Nanog	ENSMUST00000098135.1|Rbmxl2|ENSMUSG00000073894.1|RNA binding motif protein, X-linked-like 2
mm10_v2_chr1_+_88055377_88055449	0.363308	Nanog	ENSMUST00000138182.1|Ugt1a10|ENSMUSG00000090165.2|UDP glycosyltransferase 1 family, polypeptide A10 	ENSMUST00000113142.3|Ugt1a10|ENSMUSG00000090165.2|UDP glycosyltransferase 1 family, polypeptide A10
mm10_v2_chr5_-_103977404_103977415	0.359054	Nanog	ENSMUST00000112803.2|Hsd17b13|ENSMUSG00000034528.9|hydroxysteroid (17-beta) dehydrogenase 13
mm10_v2_chr8_+_47824459_47824482	0.35852	Nanog	ENSMUST00000038693.6|Cldn22|ENSMUSG00000038064.6|claudin 22
mm10_v2_chr19_+_25672408_25672420	0.358094	Nanog	ENSMUST00000053068.5|Dmrt2|ENSMUSG00000048138.9|doublesex and mab-3 related transcription factor 2
mm10_v2_chr11_-_99244058_99244136	0.351896	Nanog	ENSMUST00000103132.3|Krt222|ENSMUSG00000035849.8|keratin 222 	ENSMUST00000038214.6|Krt222|ENSMUSG00000035849.8|keratin 222
mm10_v2_chr7_+_128246812_128246948	0.339597	Nanog	ENSMUST00000164710.1|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1 	ENSMUST00000070656.5|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1
mm10_v2_chr4_+_126024506_126024550	0.338292	Nanog	ENSMUST00000106162.1|Csf3r|ENSMUSG00000028859.8|colony stimulating factor 3 receptor (granulocyte)
mm10_v2_chr7_-_90475971_90476003	0.338161	Nanog	ENSMUST00000032843.7|Tmem126b|ENSMUSG00000030614.7|transmembrane protein 126B
mm10_v2_chr18_+_37300799_37300835	0.336133	Nanog	ENSMUST00000051754.1|Pcdhb3|ENSMUSG00000045498.1|protocadherin beta 3
mm10_v2_chr7_-_6730412_6730431	0.329584	Nanog	ENSMUST00000051209.4|Peg3|ENSMUSG00000002265.9|paternally expressed 3
mm10_v2_chr7_+_19411086_19411101	0.328482	Nanog	ENSMUST00000003643.1|Ckm|ENSMUSG00000030399.1|creatine kinase, muscle
mm10_v2_chr1_-_9298499_9298573	0.324421	Nanog	ENSMUST00000132064.1|Sntg1|ENSMUSG00000025909.10|syntrophin, gamma 1
mm10_v2_chr5_-_103977326_103977356	0.318943	Nanog	ENSMUST00000120320.1|Hsd17b13|ENSMUSG00000034528.9|hydroxysteroid (17-beta) dehydrogenase 13
mm10_v2_chr9_-_15301555_15301607	0.318331	Nanog	ENSMUST00000034414.8|4931406C07Rik|ENSMUSG00000031938.8|RIKEN cDNA 4931406C07 gene
mm10_v2_chr17_+_46681038_46681184	0.315604	Nanog	ENSMUST00000002845.6|Mea1|ENSMUSG00000002768.7|male enhanced antigen 1
mm10_v2_chr5_-_134456702_134456785	0.315195	Nanog	ENSMUST00000073161.5|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000171794.2|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000111245.2|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000100654.3|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000167084.2|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000100652.3|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000100650.3|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000074114.5|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1
mm10_v2_chr6_+_8259327_8259350	0.314462	Nanog	ENSMUST00000159378.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039
mm10_v2_chr9_-_106891401_106891438	0.313513	Nanog	ENSMUST00000069036.7|Manf|ENSMUSG00000032575.10|mesencephalic astrocyte-derived neurotrophic factor
mm10_v2_chr16_-_3872378_3872411	0.305744	Nanog	ENSMUST00000090522.4|Zfp597|ENSMUSG00000039789.7|zinc finger protein 597
mm10_v2_chr6_+_71282280_71282280	0.302379	Nanog	ENSMUST00000080949.7|Krcc1|ENSMUSG00000053012.11|lysine-rich coiled-coil 1
mm10_v2_chr18_-_78206408_78206440	0.301213	Nanog	ENSMUST00000163367.1|Slc14a2|ENSMUSG00000024552.9|solute carrier family 14 (urea transporter), member 2
mm10_v2_chrX_+_7822289_7822289	0.299585	Nanog	ENSMUST00000009875.4|Kcnd1|ENSMUSG00000009731.4|potassium voltage-gated channel, Shal-related family, member 1
mm10_v2_chr2_-_84715160_84715218	0.296123	Nanog	ENSMUST00000035840.5|Zdhhc5|ENSMUSG00000034075.10|zinc finger, DHHC domain containing 5
mm10_v2_chr2_-_173276144_173276189	0.295823	Nanog	ENSMUST00000139306.1|Pmepa1|ENSMUSG00000038400.9|prostate transmembrane protein, androgen induced 1
mm10_v2_chr14_-_12345847_12345872	0.295151	Nanog	ENSMUST00000022262.4|Fezf2|ENSMUSG00000021743.5|Fez family zinc finger 2
mm10_v2_chr8_-_120589304_120589304	0.294452	Nanog	ENSMUST00000034278.5|Gins2|ENSMUSG00000031821.5|GINS complex subunit 2 (Psf2 homolog)
mm10_v2_chr2_+_20737306_20737321	0.292187	Nanog	ENSMUST00000114606.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4 	ENSMUST00000114608.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4
mm10_v2_chr8_+_78509319_78509399	0.28516	Nanog	ENSMUST00000034111.8|Slc10a7|ENSMUSG00000031684.10|solute carrier family 10 (sodium/bile acid cotransporter family), member 7
mm10_v2_chr10_-_25200110_25200178	0.284204	Nanog	ENSMUST00000100012.2|Akap7|ENSMUSG00000039166.9|A kinase (PRKA) anchor protein 7
mm10_v2_chr5_+_57718021_57718104	0.283677	Nanog	ENSMUST00000094783.3|Pcdh7|ENSMUSG00000029108.8|protocadherin 7 	ENSMUST00000068110.7|Pcdh7|ENSMUSG00000029108.8|protocadherin 7
mm10_v2_chr16_-_18622403_18622403	0.282625	Nanog	ENSMUST00000167388.1|Gp1bb|ENSMUSG00000050761.3|glycoprotein Ib, beta polypeptide
mm10_v2_chr11_+_95712673_95712673	0.282193	Nanog	ENSMUST00000107717.1|Zfp652|ENSMUSG00000075595.3|zinc finger protein 652
mm10_v2_chr11_+_58757604_58757604	0.281941	Nanog	ENSMUST00000073005.2|Olfr316|ENSMUSG00000061835.2|olfactory receptor 316
mm10_v2_chr4_+_136310936_136310947	0.281457	Nanog	ENSMUST00000131671.1|Hnrnpr|ENSMUSG00000066037.8|heterogeneous nuclear ribonucleoprotein R
mm10_v2_chr4_-_126968124_126968154	0.281155	Nanog	ENSMUST00000106108.2|Zmym4|ENSMUSG00000042446.10|zinc finger, MYM-type 4
mm10_v2_chr3_-_144819494_144819494	0.280996	Nanog	ENSMUST00000029929.7|Clca2|ENSMUSG00000028262.9|chloride channel calcium activated 2
mm10_v2_chr6_+_29853746_29853790	0.277809	Nanog	ENSMUST00000064872.6|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2 	ENSMUST00000152581.1|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2 	ENSMUST00000176265.1|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2 	ENSMUST00000154079.1|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2
mm10_v2_chr6_-_29179584_29179584	0.277188	Nanog	ENSMUST00000159200.1|Prrt4|ENSMUSG00000079654.3|proline-rich transmembrane protein 4
mm10_v2_chr12_-_83921809_83921898	0.273951	Nanog	ENSMUST00000135962.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000155112.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000136848.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000126943.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila)
mm10_v2_chr6_-_120531289_120531328	0.273221	Nanog	ENSMUST00000075303.6|Cecr5|ENSMUSG00000058979.6|cat eye syndrome chromosome region, candidate 5
mm10_v2_chr9_+_58554799_58554799	0.272894	Nanog	ENSMUST00000098676.2|Gm10657|ENSMUSG00000074273.2|predicted gene 10657
mm10_v2_chr7_+_110627650_110627669	0.271939	Nanog	ENSMUST00000033054.8|Adm|ENSMUSG00000030790.8|adrenomedullin
mm10_v2_chr14_+_61607455_61607482	0.266214	Nanog	ENSMUST00000051184.8|Kcnrg|ENSMUSG00000046168.8|potassium channel regulator
mm10_v2_chr7_+_128688480_128688500	0.2646	Nanog	ENSMUST00000118605.1|Inpp5f|ENSMUSG00000042105.12|inositol polyphosphate-5-phosphatase F
mm10_v2_chr4_-_11386757_11386783	0.263671	Nanog	ENSMUST00000108313.1|Esrp1|ENSMUSG00000040728.9|epithelial splicing regulatory protein 1 	ENSMUST00000108311.2|Esrp1|ENSMUSG00000040728.9|epithelial splicing regulatory protein 1
mm10_v2_chr3_+_89136133_89136183	0.262371	Nanog	ENSMUST00000047111.6|Pklr|ENSMUSG00000041237.6|pyruvate kinase liver and red blood cell
mm10_v2_chr11_+_102885160_102885174	0.260947	Nanog	ENSMUST00000100369.3|Fam187a|ENSMUSG00000075510.3|family with sequence similarity 187, member A
mm10_v2_chr16_+_18811772_18811832	0.260822	Nanog	ENSMUST00000168822.1|Ufd1l|ENSMUSG00000005262.6|ubiquitin fusion degradation 1 like 	ENSMUST00000115578.3|Ufd1l|ENSMUSG00000005262.6|ubiquitin fusion degradation 1 like
mm10_v2_chr17_+_20945311_20945355	0.259829	Nanog	ENSMUST00000007708.7|Ppp2r1a|ENSMUSG00000007564.8|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform
mm10_v2_chr5_-_139484475_139484549	0.256295	Nanog	ENSMUST00000110851.1|Zfand2a|ENSMUSG00000053581.7|zinc finger, AN1-type domain 2A 	ENSMUST00000079996.6|Zfand2a|ENSMUSG00000053581.7|zinc finger, AN1-type domain 2A
mm10_v2_chr7_+_64287665_64287676	0.253239	Nanog	ENSMUST00000032736.4|Mtmr10|ENSMUSG00000030522.8|myotubularin related protein 10
mm10_v2_chr12_+_72441933_72441970	0.252597	Nanog	ENSMUST00000161284.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr18_+_84851338_84851429	0.251997	Nanog	ENSMUST00000160180.1|Cyb5|ENSMUSG00000024646.7|cytochrome b-5
mm10_v2_chr13_-_9765137_9765321	0.251249	Nanog	ENSMUST00000062658.8|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000130151.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000110636.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000152725.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr1_+_88055467_88055481	0.249155	Nanog	ENSMUST00000173325.1|Ugt1a10|ENSMUSG00000090165.2|UDP glycosyltransferase 1 family, polypeptide A10
mm10_v2_chr3_-_152193803_152193831	0.247547	Nanog	ENSMUST00000050073.6|Dnajb4|ENSMUSG00000028035.7|DnaJ (Hsp40) homolog, subfamily B, member 4
mm10_v2_chr3_+_94362444_94362444	0.244236	Nanog	ENSMUST00000169433.1|C2cd4d|ENSMUSG00000091648.1|C2 calcium-dependent domain containing 4D
mm10_v2_chr4_+_133553370_133553393	0.242926	Nanog	ENSMUST00000042706.2|Nr0b2|ENSMUSG00000037583.2|nuclear receptor subfamily 0, group B, member 2
mm10_v2_chr8_+_25720054_25720099	0.242504	Nanog	ENSMUST00000068916.8|Ppapdc1b|ENSMUSG00000031570.10|phosphatidic acid phosphatase type 2 domain containing 1B 	ENSMUST00000139836.1|Ppapdc1b|ENSMUSG00000031570.10|phosphatidic acid phosphatase type 2 domain containing 1B
mm10_v2_chr19_-_7966000_7966037	0.239532	Nanog	ENSMUST00000182102.1|Slc22a27|ENSMUSG00000067656.7|solute carrier family 22, member 27 	ENSMUST00000075619.4|Slc22a27|ENSMUSG00000067656.7|solute carrier family 22, member 27
mm10_v2_chr12_+_111814170_111814245	0.238027	Nanog	ENSMUST00000021714.7|Zfyve21|ENSMUSG00000021286.7|zinc finger, FYVE domain containing 21
mm10_v2_chr12_+_72441852_72441866	0.236046	Nanog	ENSMUST00000162159.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr16_+_3872368_3872385	0.233659	Nanog	ENSMUST00000151988.1|Naa60|ENSMUSG00000005982.7|N(alpha)-acetyltransferase 60, NatF catalytic subunit
mm10_v2_chr4_+_86575668_86575689	0.230796	Nanog	ENSMUST00000091064.6|Rraga|ENSMUSG00000070934.5|Ras-related GTP binding A
mm10_v2_chr10_-_128960965_128960988	0.229888	Nanog	ENSMUST00000026398.3|Mettl7b|ENSMUSG00000025347.3|methyltransferase like 7B
mm10_v2_chr7_-_89633124_89633124	0.227994	Nanog	ENSMUST00000172178.1|A230065N10Rik|ENSMUSG00000092071.1|RIKEN cDNA A230065N10 gene
mm10_v2_chr9_+_44379490_44379513	0.227399	Nanog	ENSMUST00000066601.6|Hyou1|ENSMUSG00000032115.7|hypoxia up-regulated 1
mm10_v2_chr19_+_39060998_39061015	0.226946	Nanog	ENSMUST00000087236.4|Cyp2c65|ENSMUSG00000067231.4|cytochrome P450, family 2, subfamily c, polypeptide 65
mm10_v2_chr7_+_104329471_104329471	0.224534	Nanog	ENSMUST00000180136.1|Trim34b|ENSMUSG00000090215.2|tripartite motif-containing 34B 	ENSMUST00000178316.1|Trim34b|ENSMUSG00000090215.2|tripartite motif-containing 34B
mm10_v2_chr11_+_49609263_49609263	0.224219	Nanog	ENSMUST00000020617.2|Flt4|ENSMUSG00000020357.3|FMS-like tyrosine kinase 4
mm10_v2_chr9_+_55541148_55541209	0.223701	Nanog	ENSMUST00000034869.4|Isl2|ENSMUSG00000032318.6|insulin related protein 2 (islet 2)
mm10_v2_chrX_-_56822308_56822346	0.223641	Nanog	ENSMUST00000135542.1|Mtap7d3|ENSMUSG00000067878.7|MAP7 domain containing 3 	ENSMUST00000114766.1|Mtap7d3|ENSMUSG00000067878.7|MAP7 domain containing 3
mm10_v2_chr17_-_15826521_15826590	0.221965	Nanog	ENSMUST00000170578.1|Rgmb|ENSMUSG00000048027.7|RGM domain family, member B
mm10_v2_chr18_+_77185815_77185879	0.219155	Nanog	ENSMUST00000079618.4|St8sia5|ENSMUSG00000025425.11|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
mm10_v2_chr8_-_83594405_83594432	0.217219	Nanog	ENSMUST00000163837.1|Tecr|ENSMUSG00000031708.9|trans-2,3-enoyl-CoA reductase
mm10_v2_chr17_+_35379608_35379637	0.213862	Nanog	ENSMUST00000081435.4|H2-Q4|ENSMUSG00000035929.11|histocompatibility 2, Q region locus 4
mm10_v2_chr7_+_25267669_25267723	0.213688	Nanog	ENSMUST00000169266.1|Cic|ENSMUSG00000005442.7|capicua homolog (Drosophila)
mm10_v2_chr6_+_38551786_38551851	0.210942	Nanog	ENSMUST00000161227.1|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae)
mm10_v2_chr18_+_82554463_82554583	0.207504	Nanog	ENSMUST00000062446.7|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000102812.4|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000075372.5|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000080658.4|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000152071.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000114674.3|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000142850.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000133193.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000123251.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000153478.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000132369.1|Mbp|ENSMUSG00000041607.10|myelin basic protein
mm10_v2_chr2_-_31810580_31810580	0.206114	Nanog	ENSMUST00000057407.2|Qrfp|ENSMUSG00000043102.2|pyroglutamylated RFamide peptide
mm10_v2_chr10_-_115362191_115362262	0.20433	Nanog	ENSMUST00000092170.5|Tmem19|ENSMUSG00000069520.5|transmembrane protein 19
mm10_v2_chr18_-_67245818_67245842	0.202173	Nanog	ENSMUST00000073054.3|Mppe1|ENSMUSG00000062526.3|metallophosphoesterase 1
mm10_v2_chrY_-_1245685_1245752	0.200599	Nanog	ENSMUST00000143286.1|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome 	ENSMUST00000137048.1|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome 	ENSMUST00000069309.7|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome 	ENSMUST00000139365.1|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome
mm10_v2_chr5_-_100373484_100373527	0.198921	Nanog	ENSMUST00000182433.1|Sec31a|ENSMUSG00000035325.10|Sec31 homolog A (S. cerevisiae)
mm10_v2_chr10_-_116896879_116896956	0.196405	Nanog	ENSMUST00000048229.7|Myrfl|ENSMUSG00000034057.7|myelin regulatory factor-like
mm10_v2_chr9_+_104063678_104063710	0.195738	Nanog	ENSMUST00000047799.5|Acad11|ENSMUSG00000090150.2|acyl-Coenzyme A dehydrogenase family, member 11
mm10_v2_chr19_+_46356880_46356942	0.195142	Nanog	ENSMUST00000086969.6|Tmem180|ENSMUSG00000025227.8|transmembrane protein 180 	ENSMUST00000128455.1|Tmem180|ENSMUSG00000025227.8|transmembrane protein 180
mm10_v2_chr10_-_62422427_62422491	0.193538	Nanog	ENSMUST00000020277.8|Hkdc1|ENSMUSG00000020080.8|hexokinase domain containing 1
mm10_v2_chr17_+_37225091_37225091	0.193238	Nanog	ENSMUST00000078209.3|Olfr96|ENSMUSG00000064121.3|olfactory receptor 96
mm10_v2_chr19_-_8218832_8218899	0.189591	Nanog	ENSMUST00000113298.2|Slc22a29|ENSMUSG00000075044.5|solute carrier family 22. member 29
mm10_v2_chr16_+_44765732_44765751	0.189377	Nanog	ENSMUST00000057488.8|Cd200r1|ENSMUSG00000022667.11|CD200 receptor 1
mm10_v2_chr9_-_58159201_58159239	0.187088	Nanog	ENSMUST00000041477.7|Islr|ENSMUSG00000037206.8|immunoglobulin superfamily containing leucine-rich repeat
mm10_v2_chr10_+_42502197_42502290	0.185339	Nanog	ENSMUST00000105499.1|Snx3|ENSMUSG00000019804.6|sorting nexin 3
mm10_v2_chr8_-_83594440_83594491	0.18501	Nanog	ENSMUST00000019382.9|Tecr|ENSMUSG00000031708.9|trans-2,3-enoyl-CoA reductase 	ENSMUST00000165740.1|Tecr|ENSMUSG00000031708.9|trans-2,3-enoyl-CoA reductase
mm10_v2_chr3_-_57301919_57301956	0.184711	Nanog	ENSMUST00000029376.8|Tm4sf1|ENSMUSG00000027800.8|transmembrane 4 superfamily member 1
mm10_v2_chr1_+_131962941_131962969	0.182566	Nanog	ENSMUST00000177943.1|Slc45a3|ENSMUSG00000026435.9|solute carrier family 45, member 3
mm10_v2_chr10_+_81183000_81183048	0.181476	Nanog	ENSMUST00000178422.1|Dapk3|ENSMUSG00000034974.6|death-associated protein kinase 3
mm10_v2_chr19_+_60889749_60889749	0.181075	Nanog	ENSMUST00000003313.8|Grk5|ENSMUSG00000003228.8|G protein-coupled receptor kinase 5
mm10_v2_chr4_+_136310952_136310984	0.179355	Nanog	ENSMUST00000105850.1|Hnrnpr|ENSMUSG00000066037.8|heterogeneous nuclear ribonucleoprotein R 	ENSMUST00000148843.3|Hnrnpr|ENSMUSG00000066037.8|heterogeneous nuclear ribonucleoprotein R
mm10_v2_chr1_+_153891646_153891740	0.178162	Nanog	ENSMUST00000050660.4|Teddm1|ENSMUSG00000047053.4|transmembrane epididymal protein 1
mm10_v2_chr17_-_51826562_51826601	0.176491	Nanog	ENSMUST00000024720.4|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000129667.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000156051.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000169480.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000148559.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1
mm10_v2_chrX_-_20962005_20962025	0.174781	Nanog	ENSMUST00000123836.1|Uxt|ENSMUSG00000001134.3|ubiquitously expressed transcript
mm10_v2_chr19_-_7206234_7206316	0.17315	Nanog	ENSMUST00000123594.1|Otub1|ENSMUSG00000024767.5|OTU domain, ubiquitin aldehyde binding 1 	ENSMUST00000025679.4|Otub1|ENSMUSG00000024767.5|OTU domain, ubiquitin aldehyde binding 1
mm10_v2_chr1_+_153899937_153899953	0.17272	Nanog	ENSMUST00000086199.5|Glul|ENSMUSG00000026473.9|glutamate-ammonia ligase (glutamine synthetase)
mm10_v2_chr15_-_13173607_13173644	0.171203	Nanog	ENSMUST00000036439.4|Cdh6|ENSMUSG00000039385.4|cadherin 6
mm10_v2_chr11_-_58552237_58552237	0.169693	Nanog	ENSMUST00000073933.1|Olfr328|ENSMUSG00000057654.4|olfactory receptor 328
mm10_v2_chr7_+_100706623_100706668	0.169623	Nanog	ENSMUST00000107042.1|Fam168a|ENSMUSG00000029461.9|family with sequence similarity 168, member A
mm10_v2_chr13_+_104178797_104178872	0.169404	Nanog	ENSMUST00000022225.5|Trim23|ENSMUSG00000021712.8|tripartite motif-containing 23 	ENSMUST00000069187.5|Trim23|ENSMUSG00000021712.8|tripartite motif-containing 23
mm10_v2_chr7_+_28693032_28693144	0.168304	Nanog	ENSMUST00000151227.1|Fbxo27|ENSMUSG00000037463.8|F-box protein 27 	ENSMUST00000108281.1|Fbxo27|ENSMUSG00000037463.8|F-box protein 27
mm10_v2_chr1_-_153900198_153900210	0.166723	Nanog	ENSMUST00000123490.1|5830403L16Rik|ENSMUSG00000045968.6|RIKEN cDNA 5830403L16 gene
mm10_v2_chr19_-_46395722_46395756	0.166249	Nanog	ENSMUST00000040270.4|Actr1a|ENSMUSG00000025228.4|ARP1 actin-related protein 1A, centractin alpha
mm10_v2_chr9_+_44379536_44379624	0.165828	Nanog	ENSMUST00000161318.1|Hyou1|ENSMUSG00000032115.7|hypoxia up-regulated 1 	ENSMUST00000160902.1|Hyou1|ENSMUSG00000032115.7|hypoxia up-regulated 1
mm10_v2_chrX_+_139563316_139563339	0.164913	Nanog	ENSMUST00000113027.1|Rnf128|ENSMUSG00000031438.5|ring finger protein 128
mm10_v2_chr1_-_172082757_172082795	0.16464	Nanog	ENSMUST00000003550.4|Ncstn|ENSMUSG00000003458.6|nicastrin
mm10_v2_chr4_+_107968332_107968424	0.161459	Nanog	ENSMUST00000106713.3|Slc1a7|ENSMUSG00000008932.9|solute carrier family 1 (glutamate transporter), member 7
mm10_v2_chr1_-_36445248_36445271	0.160407	Nanog	ENSMUST00000125304.1|Lman2l|ENSMUSG00000001143.7|lectin, mannose-binding 2-like 	ENSMUST00000115011.1|Lman2l|ENSMUSG00000001143.7|lectin, mannose-binding 2-like
mm10_v2_chr17_-_32800938_32800938	0.159526	Nanog	ENSMUST00000080905.6|Zfp811|ENSMUSG00000055202.7|zinc finger protein 811
mm10_v2_chr11_-_120549695_120549728	0.15648	Nanog	ENSMUST00000034913.4|Fam195b|ENSMUSG00000061111.8|family with sequence similarity 195, member B
mm10_v2_chr7_+_49246131_49246202	0.155561	Nanog	ENSMUST00000064395.6|Nav2|ENSMUSG00000052512.9|neuron navigator 2
mm10_v2_chr4_-_11386394_11386539	0.152914	Nanog	ENSMUST00000155519.1|Esrp1|ENSMUSG00000040728.9|epithelial splicing regulatory protein 1
mm10_v2_chr12_-_111813834_111813858	0.15173	Nanog	ENSMUST00000021715.5|Xrcc3|ENSMUSG00000021287.6|X-ray repair complementing defective repair in Chinese hamster cells 3
mm10_v2_chr1_+_89454769_89454885	0.147616	Nanog	ENSMUST00000027521.8|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 	ENSMUST00000074945.5|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm10_v2_chr17_-_47834682_47834691	0.146434	Nanog	ENSMUST00000066368.6|Mdfi|ENSMUSG00000032717.8|MyoD family inhibitor
mm10_v2_chr2_+_130576170_130576176	0.1445	Nanog	ENSMUST00000028764.5|Oxt|ENSMUSG00000027301.7|oxytocin
mm10_v2_chr3_+_114030532_114030571	0.144068	Nanog	ENSMUST00000123619.1|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1 	ENSMUST00000092155.5|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1
mm10_v2_chr6_+_30610984_30611026	0.143271	Nanog	ENSMUST00000062758.4|Cpa5|ENSMUSG00000029788.7|carboxypeptidase A5
mm10_v2_chr6_+_30611029_30611051	0.143101	Nanog	ENSMUST00000115138.1|Cpa5|ENSMUSG00000029788.7|carboxypeptidase A5
mm10_v2_chr1_-_75133866_75133890	0.142179	Nanog	ENSMUST00000027405.4|Slc23a3|ENSMUSG00000026205.7|solute carrier family 23 (nucleobase transporters), member 3
mm10_v2_chrX_-_164250368_164250382	0.141303	Nanog	ENSMUST00000112263.1|Bmx|ENSMUSG00000031377.5|BMX non-receptor tyrosine kinase
mm10_v2_chr9_+_108490676_108490692	0.139403	Nanog	ENSMUST00000178075.1|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19 	ENSMUST00000085044.7|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19 	ENSMUST00000166103.2|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19 	ENSMUST00000006854.7|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19
mm10_v2_chr2_+_155236529_155236599	0.134209	Nanog	ENSMUST00000109682.2|Dynlrb1|ENSMUSG00000047459.8|dynein light chain roadblock-type 1
mm10_v2_chr11_-_58502554_58502572	0.132534	Nanog	ENSMUST00000170501.2|Olfr331|ENSMUSG00000058807.4|olfactory receptor 331 	ENSMUST00000081743.2|Olfr331|ENSMUSG00000058807.4|olfactory receptor 331
mm10_v2_chr15_+_89089073_89089111	0.130585	Nanog	ENSMUST00000082439.4|Selo|ENSMUSG00000035757.10|selenoprotein O
mm10_v2_chr17_-_43543639_43543639	0.130027	Nanog	ENSMUST00000178772.1|Ankrd66|ENSMUSG00000096140.1|ankyrin repeat domain 66
mm10_v2_chr9_-_7184440_7184518	0.127724	Nanog	ENSMUST00000140466.1|Dync2h1|ENSMUSG00000047193.9|dynein cytoplasmic 2 heavy chain 1
mm10_v2_chr3_-_94176616_94176616	0.125854	Nanog	ENSMUST00000167916.1|Gm10696|ENSMUSG00000074424.3|predicted gene 10696
mm10_v2_chr3_-_88254706_88254722	0.124812	Nanog	ENSMUST00000171887.1|Rhbg|ENSMUSG00000001417.4|Rhesus blood group-associated B glycoprotein
mm10_v2_chr8_+_8661794_8661806	0.122516	Nanog	ENSMUST00000048606.1|4921522P10Rik|ENSMUSG00000040467.1|RIKEN cDNA 4921522P10 gene
mm10_v2_chr16_+_13671980_13672032	0.122067	Nanog	ENSMUST00000069281.7|Bfar|ENSMUSG00000022684.8|bifunctional apoptosis regulator
mm10_v2_chr4_-_129261394_129261406	0.121631	Nanog	ENSMUST00000145261.1|C77080|ENSMUSG00000050390.6|expressed sequence C77080
mm10_v2_chr9_+_110849507_110849538	0.120098	Nanog	ENSMUST00000119427.2|Prss46|ENSMUSG00000049719.8|protease, serine, 46
mm10_v2_chr5_+_19907774_19907861	0.116679	Nanog	ENSMUST00000115267.2|Magi2|ENSMUSG00000040003.11|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm10_v2_chr16_-_32877723_32877766	0.116151	Nanog	ENSMUST00000119810.1|1700021K19Rik|ENSMUSG00000035629.11|RIKEN cDNA 1700021K19 gene
mm10_v2_chr1_+_172082796_172082855	0.116138	Nanog	ENSMUST00000027833.5|Copa|ENSMUSG00000026553.11|coatomer protein complex subunit alpha
mm10_v2_chr8_+_110721462_110721486	0.112911	Nanog	ENSMUST00000052457.8|Mtss1l|ENSMUSG00000033763.8|metastasis suppressor 1-like
mm10_v2_chr8_-_25201349_25201459	0.109171	Nanog	ENSMUST00000084512.4|Tacc1|ENSMUSG00000065954.4|transforming, acidic coiled-coil containing protein 1 	ENSMUST00000084030.4|Tacc1|ENSMUSG00000065954.4|transforming, acidic coiled-coil containing protein 1
mm10_v2_chr2_+_3513035_3513074	0.108064	Nanog	ENSMUST00000036350.2|Cdnf|ENSMUSG00000039496.2|cerebral dopamine neurotrophic factor
mm10_v2_chr2_+_62664279_62664300	0.107673	Nanog	ENSMUST00000028257.2|Gca|ENSMUSG00000026893.4|grancalcin
mm10_v2_chr5_-_103629279_103629403	0.107149	Nanog	ENSMUST00000031263.1|Slc10a6|ENSMUSG00000029321.1|solute carrier family 10 (sodium/bile acid cotransporter family), member 6
mm10_v2_chr12_-_52028063_52028063	0.10628	Nanog	ENSMUST00000040161.4|Gpr33|ENSMUSG00000035148.4|G protein-coupled receptor 33
mm10_v2_chr4_+_154964117_154964147	0.105328	Nanog	ENSMUST00000030931.4|Pank4|ENSMUSG00000029056.7|pantothenate kinase 4 	ENSMUST00000070953.4|Pank4|ENSMUSG00000029056.7|pantothenate kinase 4
mm10_v2_chr4_+_116708467_116708509	0.104844	Nanog	ENSMUST00000030452.6|Ccdc163|ENSMUSG00000028689.8|coiled-coil domain containing 163
mm10_v2_chr5_-_28467093_28467109	0.104592	Nanog	ENSMUST00000002708.3|Shh|ENSMUSG00000002633.3|sonic hedgehog
mm10_v2_chr16_+_13671858_13671918	0.104582	Nanog	ENSMUST00000023365.6|Bfar|ENSMUSG00000022684.8|bifunctional apoptosis regulator
mm10_v2_chr7_-_6011010_6011010	0.103926	Nanog	ENSMUST00000086338.1|Vmn1r65|ENSMUSG00000066850.1|vomeronasal 1 receptor 65
mm10_v2_chr6_-_146502099_146502133	0.102961	Nanog	ENSMUST00000053273.8|Itpr2|ENSMUSG00000030287.9|inositol 1,4,5-triphosphate receptor 2
mm10_v2_chr18_+_24205303_24205348	0.102954	Nanog	ENSMUST00000000430.7|Galnt1|ENSMUSG00000000420.9|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
mm10_v2_chr6_-_140041409_140041466	0.102304	Nanog	ENSMUST00000032356.6|Plcz1|ENSMUSG00000030230.9|phospholipase C, zeta 1
mm10_v2_chr15_+_98092569_98092603	0.102224	Nanog	ENSMUST00000163507.1|Pfkm|ENSMUSG00000033065.7|phosphofructokinase, muscle
mm10_v2_chr9_-_71168657_71168683	0.10137	Nanog	ENSMUST00000113570.1|Aqp9|ENSMUSG00000032204.7|aquaporin 9
mm10_v2_chr7_-_126584578_126584627	0.101252	Nanog	ENSMUST00000150311.1|Cln3|ENSMUSG00000030720.10|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)
mm10_v2_chr1_+_153874335_153874354	0.0972112	Nanog	ENSMUST00000055314.3|Gm5531|ENSMUSG00000043282.3|predicted gene 5531
mm10_v2_chr5_-_135744206_135744271	0.0950551	Nanog	ENSMUST00000153399.1|Tmem120a|ENSMUSG00000039886.2|transmembrane protein 120A 	ENSMUST00000043378.2|Tmem120a|ENSMUSG00000039886.2|transmembrane protein 120A
mm10_v2_chr2_+_103424056_103424076	0.0944762	Nanog	ENSMUST00000028609.7|Elf5|ENSMUSG00000027186.8|E74-like factor 5
mm10_v2_chr14_+_27000362_27000507	0.0933019	Nanog	ENSMUST00000035433.8|Hesx1|ENSMUSG00000040726.8|homeobox gene expressed in ES cells
mm10_v2_chr11_-_98053415_98053467	0.0930045	Nanog	ENSMUST00000017544.2|Stac2|ENSMUSG00000017400.4|SH3 and cysteine rich domain 2
mm10_v2_chr13_-_9764943_9764994	0.0923634	Nanog	ENSMUST00000110634.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr17_-_25833361_25833402	0.0921104	Nanog	ENSMUST00000044911.8|Stub1|ENSMUSG00000039615.8|STIP1 homology and U-Box containing protein 1
mm10_v2_chr4_-_49597425_49597493	0.0907856	Nanog	ENSMUST00000150664.1|Tmem246|ENSMUSG00000039611.2|transmembrane protein 246
mm10_v2_chr17_-_25919506_25919740	0.0905819	Nanog	ENSMUST00000164982.1|Rab40c|ENSMUSG00000025730.8|Rab40c, member RAS oncogene family 	ENSMUST00000179998.1|Rab40c|ENSMUSG00000025730.8|Rab40c, member RAS oncogene family 	ENSMUST00000167626.1|Rab40c|ENSMUSG00000025730.8|Rab40c, member RAS oncogene family 	ENSMUST00000164738.1|Rab40c|ENSMUSG00000025730.8|Rab40c, member RAS oncogene family 	ENSMUST00000026826.7|Rab40c|ENSMUSG00000025730.8|Rab40c, member RAS oncogene family 	ENSMUST00000167018.1|Rab40c|ENSMUSG00000025730.8|Rab40c, member RAS oncogene family
mm10_v2_chr12_-_113330518_113330523	0.0894187	Nanog	ENSMUST00000103420.1|Ighg1|ENSMUSG00000076614.2|immunoglobulin heavy constant gamma 1 (G1m marker)
mm10_v2_chr7_-_3629874_3629929	0.0875304	Nanog	ENSMUST00000155592.1|Tfpt|ENSMUSG00000006335.10|TCF3 (E2A) fusion partner 	ENSMUST00000108641.3|Tfpt|ENSMUSG00000006335.10|TCF3 (E2A) fusion partner
mm10_v2_chr3_+_130617448_130617583	0.0851285	Nanog	ENSMUST00000166187.1|Etnppl|ENSMUSG00000019232.8|ethanolamine phosphate phospholyase 	ENSMUST00000072271.6|Etnppl|ENSMUSG00000019232.8|ethanolamine phosphate phospholyase
mm10_v2_chr7_+_103550368_103550368	0.0849663	Nanog	ENSMUST00000106888.1|Olfr613|ENSMUSG00000078624.2|olfactory receptor 613
mm10_v2_chr2_+_160731684_160731760	0.0847168	Nanog	ENSMUST00000174885.1|Plcg1|ENSMUSG00000016933.11|phospholipase C, gamma 1 	ENSMUST00000109462.1|Plcg1|ENSMUSG00000016933.11|phospholipase C, gamma 1
mm10_v2_chr12_-_4038905_4038957	0.0822246	Nanog	ENSMUST00000111178.1|Efr3b|ENSMUSG00000020658.9|EFR3 homolog B (S. cerevisiae)
mm10_v2_chr2_+_26581050_26581061	0.0808908	Nanog	ENSMUST00000166920.2|Egfl7|ENSMUSG00000026921.12|EGF-like domain 7
mm10_v2_chr10_-_99126321_99126321	0.0805564	Nanog	ENSMUST00000060761.5|Phxr2|ENSMUSG00000055108.5|per-hexamer repeat gene 2
mm10_v2_chr19_+_8802486_8802530	0.0770957	Nanog	ENSMUST00000172175.1|Zbtb3|ENSMUSG00000071661.6|zinc finger and BTB domain containing 3
mm10_v2_chr2_+_155236602_155236617	0.0768772	Nanog	ENSMUST00000150602.1|Dynlrb1|ENSMUSG00000047459.8|dynein light chain roadblock-type 1
mm10_v2_chr4_+_109415631_109415648	0.0763746	Nanog	ENSMUST00000106618.1|Ttc39a|ENSMUSG00000028555.9|tetratricopeptide repeat domain 39A
mm10_v2_chr4_+_43506966_43507034	0.0756212	Nanog	ENSMUST00000030183.3|Car9|ENSMUSG00000028463.8|carbonic anhydrase 9
mm10_v2_chr7_-_98656530_98656600	0.0739262	Nanog	ENSMUST00000038359.4|2210018M11Rik|ENSMUSG00000035401.8|RIKEN cDNA 2210018M11 gene
mm10_v2_chr3_-_49757257_49757316	0.0729755	Nanog	ENSMUST00000035931.7|Pcdh18|ENSMUSG00000037892.8|protocadherin 18
mm10_v2_chr11_+_75468040_75468096	0.0728276	Nanog	ENSMUST00000043598.7|Tlcd2|ENSMUSG00000038217.7|TLC domain containing 2 	ENSMUST00000108435.1|Tlcd2|ENSMUSG00000038217.7|TLC domain containing 2
mm10_v2_chr13_+_111686303_111686351	0.0725359	Nanog	ENSMUST00000047412.4|Mier3|ENSMUSG00000032727.7|mesoderm induction early response 1, family member 3 	ENSMUST00000109271.2|Mier3|ENSMUSG00000032727.7|mesoderm induction early response 1, family member 3
mm10_v2_chr3_+_65666223_65666259	0.0701043	Nanog	ENSMUST00000099075.2|Lekr1|ENSMUSG00000074579.7|leucine, glutamate and lysine rich 1 	ENSMUST00000107848.1|Lekr1|ENSMUSG00000074579.7|leucine, glutamate and lysine rich 1 	ENSMUST00000161794.1|Lekr1|ENSMUSG00000074579.7|leucine, glutamate and lysine rich 1
mm10_v2_chr2_-_37703845_37703885	0.0692307	Nanog	ENSMUST00000155237.1|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr3_+_121291725_121291817	0.0639922	Nanog	ENSMUST00000039442.7|Alg14|ENSMUSG00000039887.7|asparagine-linked glycosylation 14
mm10_v2_chr15_+_44457522_44457553	0.0629232	Nanog	ENSMUST00000166957.1|Pkhd1l1|ENSMUSG00000038725.5|polycystic kidney and hepatic disease 1-like 1 	ENSMUST00000038336.5|Pkhd1l1|ENSMUSG00000038725.5|polycystic kidney and hepatic disease 1-like 1
mm10_v2_chr2_+_115581667_115581743	0.0603498	Nanog	ENSMUST00000166472.1|BC052040|ENSMUSG00000040282.7|cDNA sequence BC052040 	ENSMUST00000110918.2|BC052040|ENSMUSG00000040282.7|cDNA sequence BC052040
mm10_v2_chr1_+_50927511_50927543	0.0577083	Nanog	ENSMUST00000081851.3|Tmeff2|ENSMUSG00000026109.8|transmembrane protein with EGF-like and two follistatin-like domains 2
mm10_v2_chr13_-_51567084_51567084	0.0573982	Nanog	ENSMUST00000021898.5|Shc3|ENSMUSG00000021448.6|src homology 2 domain-containing transforming protein C3
mm10_v2_chr10_-_9901079_9901250	0.0546158	Nanog	ENSMUST00000141722.1|Stxbp5|ENSMUSG00000019790.10|syntaxin binding protein 5 (tomosyn)
mm10_v2_chr11_+_70970181_70970213	0.0502194	Nanog	ENSMUST00000018593.3|Rpain|ENSMUSG00000018449.6|RPA interacting protein
mm10_v2_chr1_+_135584773_135584773	0.048991	Nanog	ENSMUST00000067468.4|Gm4793|ENSMUSG00000054412.4|predicted gene 4793
mm10_v2_chr18_+_13006990_13006990	0.0486727	Nanog	ENSMUST00000041676.2|Hrh4|ENSMUSG00000037346.4|histamine receptor H4
mm10_v2_chr2_+_162943474_162943516	0.0483787	Nanog	ENSMUST00000035751.5|L3mbtl1|ENSMUSG00000035576.7|l(3)mbt-like (Drosophila) 	ENSMUST00000156954.1|L3mbtl1|ENSMUSG00000035576.7|l(3)mbt-like (Drosophila)
mm10_v2_chr2_+_57997884_57997884	0.0480038	Nanog	ENSMUST00000112616.1|Galnt5|ENSMUSG00000026828.5|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 	ENSMUST00000166729.1|Galnt5|ENSMUSG00000026828.5|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5
mm10_v2_chrX_+_13661354_13661366	0.0465402	Nanog	ENSMUST00000053659.1|Gpr82|ENSMUSG00000047678.1|G protein-coupled receptor 82
mm10_v2_chr14_+_79515618_79515694	0.0463299	Nanog	ENSMUST00000110835.1|Elf1|ENSMUSG00000036461.9|E74-like factor 1
mm10_v2_chr11_-_101095367_101095439	0.045134	Nanog	ENSMUST00000019447.8|Psmc3ip|ENSMUSG00000019303.8|proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein
mm10_v2_chr2_-_148045891_148045948	0.0421254	Nanog	ENSMUST00000109964.1|Foxa2|ENSMUSG00000037025.5|forkhead box A2
mm10_v2_chrX_-_18461371_18461402	0.0392632	Nanog	ENSMUST00000044188.4|4930578C19Rik|ENSMUSG00000037358.6|RIKEN cDNA 4930578C19 gene
mm10_v2_chr1_-_152625212_152625220	0.0375556	Nanog	ENSMUST00000027760.7|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1
mm10_v2_chr3_-_102782708_102782715	0.0374594	Nanog	ENSMUST00000029450.3|Tshb|ENSMUSG00000027857.4|thyroid stimulating hormone, beta subunit 	ENSMUST00000172026.1|Tshb|ENSMUSG00000027857.4|thyroid stimulating hormone, beta subunit 	ENSMUST00000170856.1|Tshb|ENSMUSG00000027857.4|thyroid stimulating hormone, beta subunit
mm10_v2_chr2_+_29060239_29060287	0.0361949	Nanog	ENSMUST00000100237.3|Ttf1|ENSMUSG00000026803.11|transcription termination factor, RNA polymerase I
mm10_v2_chr10_+_130322845_130322856	0.0345266	Nanog	ENSMUST00000042586.8|Tespa1|ENSMUSG00000034833.9|thymocyte expressed, positive selection associated 1
mm10_v2_chr3_-_123672321_123672400	0.0326385	Nanog	ENSMUST00000172537.1|Ndst3|ENSMUSG00000027977.9|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 	ENSMUST00000029602.6|Ndst3|ENSMUSG00000027977.9|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
mm10_v2_chr15_-_101892916_101892921	0.0326075	Nanog	ENSMUST00000100179.1|Krt76|ENSMUSG00000075402.1|keratin 76
mm10_v2_chr11_-_116077606_116077750	0.0302131	Nanog	ENSMUST00000106450.1|Unc13d|ENSMUSG00000057948.6|unc-13 homolog D (C. elegans)
mm10_v2_chr2_+_127909058_127909058	0.0294621	Nanog	ENSMUST00000110344.1|Acoxl|ENSMUSG00000027380.4|acyl-Coenzyme A oxidase-like
mm10_v2_chr10_+_40349265_40349387	0.0288567	Nanog	ENSMUST00000044672.4|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19 	ENSMUST00000095743.2|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19
mm10_v2_chr16_+_11405648_11405713	0.026018	Nanog	ENSMUST00000096273.2|Snx29|ENSMUSG00000071669.8|sorting nexin 29
mm10_v2_chr19_+_7557452_7557465	0.0257842	Nanog	ENSMUST00000025925.4|Pla2g16|ENSMUSG00000060675.7|phospholipase A2, group XVI 	ENSMUST00000136465.1|Pla2g16|ENSMUSG00000060675.7|phospholipase A2, group XVI
mm10_v2_chr6_+_29348069_29348123	0.0247473	Nanog	ENSMUST00000173216.1|Calu|ENSMUSG00000029767.10|calumenin 	ENSMUST00000031779.10|Calu|ENSMUSG00000029767.10|calumenin 	ENSMUST00000090481.7|Calu|ENSMUSG00000029767.10|calumenin
mm10_v2_chr10_-_117224480_117224507	0.0224144	Nanog	ENSMUST00000020382.6|Yeats4|ENSMUSG00000020171.7|YEATS domain containing 4
mm10_v2_chr11_-_107337556_107337637	0.0203809	Nanog	ENSMUST00000040380.6|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr15_+_21111452_21111452	0.0202636	Nanog	ENSMUST00000075132.6|Cdh12|ENSMUSG00000040452.8|cadherin 12
mm10_v2_chr7_-_141655319_141655395	0.0201464	Nanog	ENSMUST00000062451.7|Muc6|ENSMUSG00000048191.9|mucin 6, gastric
mm10_v2_chr10_+_63457505_63457539	0.0199203	Nanog	ENSMUST00000105440.1|Ctnna3|ENSMUSG00000060843.5|catenin (cadherin associated protein), alpha 3
mm10_v2_chr13_+_24943144_24943164	0.0197368	Nanog	ENSMUST00000021773.5|Gpld1|ENSMUSG00000021340.6|glycosylphosphatidylinositol specific phospholipase D1
mm10_v2_chr18_+_77332394_77332394	0.0181171	Nanog	ENSMUST00000148341.1|Loxhd1|ENSMUSG00000032818.9|lipoxygenase homology domains 1
mm10_v2_chr13_-_21716143_21716189	0.014827	Nanog	ENSMUST00000091756.1|Hist1h2bl|ENSMUSG00000094338.1|histone cluster 1, H2bl
mm10_v2_chr11_+_62248977_62249011	0.0141237	Nanog	ENSMUST00000018644.2|Adora2b|ENSMUSG00000018500.2|adenosine A2b receptor
mm10_v2_chr10_-_127351753_127351772	0.0137704	Nanog	ENSMUST00000059718.4|Inhbe|ENSMUSG00000047492.4|inhibin beta E
mm10_v2_chr18_+_57142782_57142796	0.0137082	Nanog	ENSMUST00000139892.1|Megf10|ENSMUSG00000024593.9|multiple EGF-like-domains 10
mm10_v2_chr10_+_88885992_88886010	0.0133008	Nanog	ENSMUST00000020255.6|Slc5a8|ENSMUSG00000020062.6|solute carrier family 5 (iodide transporter), member 8
mm10_v2_chr19_-_32196393_32196428	0.0130991	Nanog	ENSMUST00000151822.1|Sgms1|ENSMUSG00000040451.11|sphingomyelin synthase 1
mm10_v2_chr4_+_94739276_94739300	0.0110736	Nanog	ENSMUST00000073939.6|Tek|ENSMUSG00000006386.9|endothelial-specific receptor tyrosine kinase 	ENSMUST00000102798.1|Tek|ENSMUSG00000006386.9|endothelial-specific receptor tyrosine kinase
mm10_v2_chr3_+_130617645_130617693	0.0109101	Nanog	ENSMUST00000163620.1|Etnppl|ENSMUSG00000019232.8|ethanolamine phosphate phospholyase
mm10_v2_chr11_+_86484647_86484716	0.00953446	Nanog	ENSMUST00000020827.6|Rnft1|ENSMUSG00000020521.7|ring finger protein, transmembrane 1
mm10_v2_chr2_-_167833642_167833648	0.00910319	Nanog	ENSMUST00000143649.1|1200007C13Rik|ENSMUSG00000087684.1|RIKEN cDNA 1200007C13 gene
mm10_v2_chr2_+_156144203_156144245	0.00862201	Nanog	ENSMUST00000109597.3|Romo1|ENSMUSG00000067847.7|reactive oxygen species modulator 1 	ENSMUST00000109598.3|Romo1|ENSMUSG00000067847.7|reactive oxygen species modulator 1 	ENSMUST00000119950.1|Romo1|ENSMUSG00000067847.7|reactive oxygen species modulator 1
mm10_v2_chr11_+_43151599_43151599	0.00765078	Nanog	ENSMUST00000077659.5|Atp10b|ENSMUSG00000055415.7|ATPase, class V, type 10B
mm10_v2_chr7_-_139582790_139582808	0.0062284	Nanog	ENSMUST00000106095.2|Nkx6-2|ENSMUSG00000041309.11|NK6 homeobox 2
mm10_v2_chr11_+_75531690_75531743	0.00177355	Nanog	ENSMUST00000149727.1|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2 	ENSMUST00000042561.7|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2 	ENSMUST00000108433.1|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2 	ENSMUST00000143035.1|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2
mm10_v2_chr9_-_51102062_51102085	0.00167192	Nanog	ENSMUST00000170947.1|4833427G06Rik|ENSMUSG00000032057.8|RIKEN cDNA 4833427G06 gene
mm10_v2_chr19_-_46962301_46962351	0.00100406	Nanog	ENSMUST00000168536.1|Nt5c2|ENSMUSG00000025041.10|5'-nucleotidase, cytosolic II
mm10_v2_chr2_-_38714491_38714542	0.000810721	Nanog	ENSMUST00000028084.4|Nr5a1|ENSMUSG00000026751.8|nuclear receptor subfamily 5, group A, member 1
