mm10_v2_chr10_+_4611971_4612021	2.92963	Nkx2-4	ENSMUST00000105590.1|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha) 	ENSMUST00000067086.7|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha)
mm10_v2_chr14_-_47418407_47418407	1.74274	Nkx2-4	ENSMUST00000043296.3|Dlgap5|ENSMUSG00000037544.7|discs, large (Drosophila) homolog-associated protein 5
mm10_v2_chr9_+_108560422_108560534	1.45633	Nkx2-4	ENSMUST00000081111.8|Impdh2|ENSMUSG00000062867.8|inosine 5'-phosphate dehydrogenase 2
mm10_v2_chr10_+_88091070_88091076	1.25939	Nkx2-4	ENSMUST00000048621.7|Pmch|ENSMUSG00000035383.7|pro-melanin-concentrating hormone
mm10_v2_chr6_+_134929089_134929103	1.07242	Nkx2-4	ENSMUST00000183867.1|RP23-45G16.5|ENSMUSG00000098318.1|RP23-45G16.5	ENSMUST00000184991.1|RP23-45G16.5|ENSMUSG00000098318.1|RP23-45G16.5	ENSMUST00000183905.1|RP23-45G16.5|ENSMUSG00000098318.1|RP23-45G16.5
mm10_v2_chr6_+_134929118_134929164	1.04195	Nkx2-4	ENSMUST00000185152.1|RP23-45G16.5|ENSMUSG00000098318.1|RP23-45G16.5	ENSMUST00000184504.1|RP23-45G16.5|ENSMUSG00000098318.1|RP23-45G16.5
mm10_v2_chr6_-_29165003_29165008	0.972712	Nkx2-4	ENSMUST00000007993.9|Rbm28|ENSMUSG00000029701.9|RNA binding motif protein 28
mm10_v2_chr13_+_3478226_3478303	0.887753	Nkx2-4	ENSMUST00000181708.1|2810429I04Rik|ENSMUSG00000097709.1|RIKEN cDNA 2810429I04 gene 	ENSMUST00000180836.1|2810429I04Rik|ENSMUSG00000097709.1|RIKEN cDNA 2810429I04 gene 	ENSMUST00000180567.1|2810429I04Rik|ENSMUSG00000097709.1|RIKEN cDNA 2810429I04 gene
mm10_v2_chr7_-_34812677_34812693	0.871891	Nkx2-4	ENSMUST00000078686.6|Chst8|ENSMUSG00000060402.6|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8
mm10_v2_chr13_+_108316395_108316422	0.856807	Nkx2-4	ENSMUST00000171178.1|Depdc1b|ENSMUSG00000021697.6|DEP domain containing 1B
mm10_v2_chr10_+_128232065_128232134	0.820737	Nkx2-4	ENSMUST00000055539.4|Timeless|ENSMUSG00000039994.9|timeless circadian clock 1 	ENSMUST00000105244.1|Timeless|ENSMUSG00000039994.9|timeless circadian clock 1 	ENSMUST00000105243.2|Timeless|ENSMUSG00000039994.9|timeless circadian clock 1 	ENSMUST00000125289.1|Timeless|ENSMUSG00000039994.9|timeless circadian clock 1 	ENSMUST00000105242.1|Timeless|ENSMUSG00000039994.9|timeless circadian clock 1
mm10_v2_chr10_+_20347788_20347859	0.718299	Nkx2-4	ENSMUST00000169712.1|Mtfr2|ENSMUSG00000019992.7|mitochondrial fission regulator 2
mm10_v2_chr8_+_66860215_66860287	0.688178	Nkx2-4	ENSMUST00000118009.1|Naf1|ENSMUSG00000014907.9|nuclear assembly factor 1 homolog (S. cerevisiae)
mm10_v2_chr6_+_21986887_21986917	0.664475	Nkx2-4	ENSMUST00000151315.1|Cped1|ENSMUSG00000062980.9|cadherin-like and PC-esterase domain containing 1
mm10_v2_chr2_+_30061754_30061859	0.639341	Nkx2-4	ENSMUST00000149578.1|Set|ENSMUSG00000054766.7|SET nuclear oncogene 	ENSMUST00000102866.3|Set|ENSMUSG00000054766.7|SET nuclear oncogene
mm10_v2_chr12_-_91746020_91746089	0.590563	Nkx2-4	ENSMUST00000166967.1|Ston2|ENSMUSG00000020961.8|stonin 2
mm10_v2_chrX_+_37265338_37265338	0.58656	Nkx2-4	ENSMUST00000115194.3|Rhox4a|ENSMUSG00000079639.3|reproductive homeobox 4A
mm10_v2_chrX_+_107089234_107089337	0.57225	Nkx2-4	ENSMUST00000118666.1|P2ry10|ENSMUSG00000050921.6|purinergic receptor P2Y, G-protein coupled 10 	ENSMUST00000053375.3|P2ry10|ENSMUSG00000050921.6|purinergic receptor P2Y, G-protein coupled 10
mm10_v2_chr6_+_21986438_21986596	0.519955	Nkx2-4	ENSMUST00000115382.1|Cped1|ENSMUSG00000062980.9|cadherin-like and PC-esterase domain containing 1
mm10_v2_chr17_-_40914350_40914350	0.487085	Nkx2-4	ENSMUST00000166343.1|Glyatl3|ENSMUSG00000091043.1|glycine-N-acyltransferase-like 3
mm10_v2_chrX_+_37390848_37390848	0.473866	Nkx2-4	ENSMUST00000179915.2|Gm21098|ENSMUSG00000094945.2|predicted gene, 21098
mm10_v2_chr2_+_140170641_140170701	0.465499	Nkx2-4	ENSMUST00000044825.4|Ndufaf5|ENSMUSG00000027384.6|NADH dehydrogenase (ubiquinone) complex I, assembly factor 5
mm10_v2_chr2_-_93046053_93046172	0.465198	Nkx2-4	ENSMUST00000111272.1|Prdm11|ENSMUSG00000075028.5|PR domain containing 11 	ENSMUST00000178666.1|Prdm11|ENSMUSG00000075028.5|PR domain containing 11 	ENSMUST00000147339.1|Prdm11|ENSMUSG00000075028.5|PR domain containing 11
mm10_v2_chr4_-_108848619_108848619	0.464632	Nkx2-4	ENSMUST00000164855.1|A730015C16Rik|ENSMUSG00000090551.1|RIKEN cDNA A730015C16 gene
mm10_v2_chr9_-_71896047_71896102	0.462887	Nkx2-4	ENSMUST00000184448.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr4_+_48663502_48663525	0.457396	Nkx2-4	ENSMUST00000030033.4|Murc|ENSMUSG00000028348.7|muscle-related coiled-coil protein
mm10_v2_chr7_-_80905060_80905081	0.448267	Nkx2-4	ENSMUST00000119428.1|Nmb|ENSMUSG00000025723.6|neuromedin B 	ENSMUST00000026817.4|Nmb|ENSMUSG00000025723.6|neuromedin B
mm10_v2_chrX_+_37557412_37557412	0.413203	Nkx2-4	ENSMUST00000089075.4|Rhox4e|ENSMUSG00000071770.4|reproductive homeobox 4E
mm10_v2_chr2_-_27507656_27507662	0.404263	Nkx2-4	ENSMUST00000154316.1|Brd3|ENSMUSG00000026918.10|bromodomain containing 3
mm10_v2_chr1_+_34439851_34439910	0.401003	Nkx2-4	ENSMUST00000027303.7|Imp4|ENSMUSG00000026127.7|IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)
mm10_v2_chr11_+_53720790_53720795	0.336404	Nkx2-4	ENSMUST00000048605.2|Il5|ENSMUSG00000036117.2|interleukin 5
mm10_v2_chr11_+_70026815_70026853	0.302536	Nkx2-4	ENSMUST00000135916.2|Dlg4|ENSMUSG00000020886.10|discs, large homolog 4 (Drosophila)
mm10_v2_chr2_-_34755229_34755252	0.272144	Nkx2-4	ENSMUST00000102800.1|Gapvd1|ENSMUSG00000026867.12|GTPase activating protein and VPS9 domains 1
mm10_v2_chr3_-_110250963_110251015	0.271343	Nkx2-4	ENSMUST00000106567.1|Prmt6|ENSMUSG00000049300.10|protein arginine N-methyltransferase 6
mm10_v2_chr3_+_76593550_76593550	0.254023	Nkx2-4	ENSMUST00000162471.1|Fstl5|ENSMUSG00000034098.8|follistatin-like 5
mm10_v2_chr1_-_118311132_118311221	0.240575	Nkx2-4	ENSMUST00000027623.7|Tsn|ENSMUSG00000026374.8|translin
mm10_v2_chr8_+_31091593_31091650	0.23565	Nkx2-4	ENSMUST00000161713.1|Dusp26|ENSMUSG00000039661.8|dual specificity phosphatase 26 (putative)
mm10_v2_chr11_+_87592897_87593006	0.22801	Nkx2-4	ENSMUST00000119628.1|Mtmr4|ENSMUSG00000018401.11|myotubularin related protein 4
mm10_v2_chr8_+_46490968_46490995	0.22121	Nkx2-4	ENSMUST00000110372.1|Acsl1|ENSMUSG00000018796.6|acyl-CoA synthetase long-chain family member 1 	ENSMUST00000130563.1|Acsl1|ENSMUSG00000018796.6|acyl-CoA synthetase long-chain family member 1
mm10_v2_chr5_+_89028035_89028096	0.217681	Nkx2-4	ENSMUST00000113216.2|Slc4a4|ENSMUSG00000060961.8|solute carrier family 4 (anion exchanger), member 4 	ENSMUST00000134303.1|Slc4a4|ENSMUSG00000060961.8|solute carrier family 4 (anion exchanger), member 4
mm10_v2_chr4_-_40279389_40279434	0.213142	Nkx2-4	ENSMUST00000108108.2|Ndufb6|ENSMUSG00000071014.4|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6 	ENSMUST00000095128.3|Ndufb6|ENSMUSG00000071014.4|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6
mm10_v2_chr12_+_38780817_38780854	0.208399	Nkx2-4	ENSMUST00000160856.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr16_+_32419696_32419753	0.166409	Nkx2-4	ENSMUST00000014220.8|Tctex1d2|ENSMUSG00000014075.9|Tctex1 domain containing 2 	ENSMUST00000080316.7|Tctex1d2|ENSMUSG00000014075.9|Tctex1 domain containing 2
mm10_v2_chr4_-_136892867_136893065	0.155664	Nkx2-4	ENSMUST00000046332.5|C1qc|ENSMUSG00000036896.5|complement component 1, q subcomponent, C chain
mm10_v2_chr3_-_59180085_59180085	0.149718	Nkx2-4	ENSMUST00000056898.4|Gpr87|ENSMUSG00000051431.6|G protein-coupled receptor 87
mm10_v2_chr6_+_142413441_142413441	0.133047	Nkx2-4	ENSMUST00000088263.4|B230216G23Rik|ENSMUSG00000071112.5|RIKEN cDNA B230216G23 gene
mm10_v2_chr9_-_14903932_14903949	0.128135	Nkx2-4	ENSMUST00000034409.7|Folr4|ENSMUSG00000031933.11|folate receptor 4 (delta) 	ENSMUST00000117620.1|Folr4|ENSMUSG00000031933.11|folate receptor 4 (delta)
mm10_v2_chr2_+_131950855_131950867	0.124493	Nkx2-4	ENSMUST00000110170.1|Prnd|ENSMUSG00000027338.10|prion protein dublet 	ENSMUST00000110172.2|Prnd|ENSMUSG00000027338.10|prion protein dublet 	ENSMUST00000110171.2|Prnd|ENSMUSG00000027338.10|prion protein dublet
mm10_v2_chr17_+_16972910_16972910	0.122995	Nkx2-4	ENSMUST00000071374.5|BC002059|ENSMUSG00000060149.5|cDNA sequence BC002059
mm10_v2_chr7_+_82867327_82867357	0.120341	Nkx2-4	ENSMUST00000082237.5|Mex3b|ENSMUSG00000057706.6|mex3 homolog B (C. elegans)
mm10_v2_chr19_-_5457397_5457494	0.117557	Nkx2-4	ENSMUST00000179549.1|Ccdc85b|ENSMUSG00000095098.1|coiled-coil domain containing 85B
mm10_v2_chr2_+_174643534_174643534	0.106042	Nkx2-4	ENSMUST00000059452.5|Zfp831|ENSMUSG00000050600.5|zinc finger protein 831
mm10_v2_chr11_+_101733011_101733041	0.0959512	Nkx2-4	ENSMUST00000129741.1|Dhx8|ENSMUSG00000034931.9|DEAH (Asp-Glu-Ala-His) box polypeptide 8
mm10_v2_chr8_+_88199194_88199224	0.0949782	Nkx2-4	ENSMUST00000119033.1|Papd5|ENSMUSG00000036779.6|PAP associated domain containing 5 	ENSMUST00000066748.3|Papd5|ENSMUSG00000036779.6|PAP associated domain containing 5 	ENSMUST00000118952.1|Papd5|ENSMUSG00000036779.6|PAP associated domain containing 5
mm10_v2_chr2_+_25180737_25180764	0.0944969	Nkx2-4	ENSMUST00000104999.2|Nrarp|ENSMUSG00000078202.2|Notch-regulated ankyrin repeat protein
mm10_v2_chr5_+_32136458_32136505	0.0944884	Nkx2-4	ENSMUST00000031017.9|Fosl2|ENSMUSG00000029135.9|fos-like antigen 2
mm10_v2_chr11_+_101732950_101732965	0.0912981	Nkx2-4	ENSMUST00000039152.7|Dhx8|ENSMUSG00000034931.9|DEAH (Asp-Glu-Ala-His) box polypeptide 8
mm10_v2_chr8_+_45628176_45628219	0.0873174	Nkx2-4	ENSMUST00000130850.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr13_+_108860072_108860166	0.0871865	Nkx2-4	ENSMUST00000177907.1|Pde4d|ENSMUSG00000021699.11|phosphodiesterase 4D, cAMP specific
mm10_v2_chr12_+_38781093_38781129	0.0860535	Nkx2-4	ENSMUST00000161513.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr3_+_121291725_121291817	0.0677171	Nkx2-4	ENSMUST00000039442.7|Alg14|ENSMUSG00000039887.7|asparagine-linked glycosylation 14
mm10_v2_chr1_+_16105774_16105870	0.0664122	Nkx2-4	ENSMUST00000027053.7|Rdh10|ENSMUSG00000025921.7|retinol dehydrogenase 10 (all-trans)
mm10_v2_chr5_+_89027959_89027967	0.0627373	Nkx2-4	ENSMUST00000130041.1|Slc4a4|ENSMUSG00000060961.8|solute carrier family 4 (anion exchanger), member 4
mm10_v2_chr2_-_85196697_85196708	0.0582552	Nkx2-4	ENSMUST00000099930.2|Lrrc55|ENSMUSG00000075224.2|leucine rich repeat containing 55 	ENSMUST00000111601.1|Lrrc55|ENSMUSG00000075224.2|leucine rich repeat containing 55
mm10_v2_chr5_-_137533170_137533204	0.0581789	Nkx2-4	ENSMUST00000168746.1|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2 	ENSMUST00000170293.1|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2
mm10_v2_chr14_+_55672235_55672298	0.054581	Nkx2-4	ENSMUST00000002397.5|Gmpr2|ENSMUSG00000002326.5|guanosine monophosphate reductase 2
mm10_v2_chr5_-_137533212_137533290	0.0480495	Nkx2-4	ENSMUST00000143495.1|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2 	ENSMUST00000111038.1|Epo|ENSMUSG00000029711.7|erythropoietin
mm10_v2_chrX_-_143933089_143933142	0.0472715	Nkx2-4	ENSMUST00000087313.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr5_+_94339749_94339749	0.0456657	Nkx2-4	ENSMUST00000097477.3|AA792892|ENSMUSG00000073497.3|expressed sequence AA792892
mm10_v2_chr1_+_85649988_85650004	0.0453604	Nkx2-4	ENSMUST00000155094.1|Sp100|ENSMUSG00000026222.10|nuclear antigen Sp100
mm10_v2_chr7_-_132813095_132813162	0.0427437	Nkx2-4	ENSMUST00000106165.1|Fam53b|ENSMUSG00000030956.9|family with sequence similarity 53, member B
mm10_v2_chr2_-_85035487_85035506	0.0385146	Nkx2-4	ENSMUST00000028465.7|P2rx3|ENSMUSG00000027071.8|purinergic receptor P2X, ligand-gated ion channel, 3
mm10_v2_chr13_+_47193942_47194010	0.0379565	Nkx2-4	ENSMUST00000110111.2|Rnf144b|ENSMUSG00000038068.8|ring finger protein 144B
mm10_v2_chrX_+_13661354_13661366	0.0375661	Nkx2-4	ENSMUST00000053659.1|Gpr82|ENSMUSG00000047678.1|G protein-coupled receptor 82
mm10_v2_chr8_+_77549393_77549444	0.0332918	Nkx2-4	ENSMUST00000056237.8|Prmt10|ENSMUSG00000037134.10|protein arginine methyltransferase 10 (putative) 	ENSMUST00000118622.1|Prmt10|ENSMUSG00000037134.10|protein arginine methyltransferase 10 (putative)
mm10_v2_chr5_-_137533297_137533311	0.0328805	Nkx2-4	ENSMUST00000111020.1|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2 	ENSMUST00000111023.1|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2
mm10_v2_chr6_-_122609964_122610087	0.028292	Nkx2-4	ENSMUST00000032211.4|Gdf3|ENSMUSG00000030117.4|growth differentiation factor 3
mm10_v2_chr19_-_8131982_8131982	0.0240559	Nkx2-4	ENSMUST00000065651.4|Slc22a28|ENSMUSG00000063590.3|solute carrier family 22, member 28
mm10_v2_chr5_-_64932761_64932761	0.0231365	Nkx2-4	ENSMUST00000059349.4|Tlr1|ENSMUSG00000044827.6|toll-like receptor 1
mm10_v2_chr14_-_55671873_55671918	0.0202164	Nkx2-4	ENSMUST00000163750.1|Nedd8|ENSMUSG00000010376.8|neural precursor cell expressed, developmentally down-regulated gene 8 	ENSMUST00000010520.8|Nedd8|ENSMUSG00000010376.8|neural precursor cell expressed, developmentally down-regulated gene 8
mm10_v2_chr9_+_122572493_122572511	0.0178141	Nkx2-4	ENSMUST00000181682.1|9530059O14Rik|ENSMUSG00000097736.1|RIKEN cDNA 9530059O14 gene 	ENSMUST00000181107.1|9530059O14Rik|ENSMUSG00000097736.1|RIKEN cDNA 9530059O14 gene 	ENSMUST00000181719.1|9530059O14Rik|ENSMUSG00000097736.1|RIKEN cDNA 9530059O14 gene
mm10_v2_chr5_+_34999111_34999184	0.0156579	Nkx2-4	ENSMUST00000114283.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr1_-_37536232_37536236	0.0137717	Nkx2-4	ENSMUST00000042161.8|Mgat4a|ENSMUSG00000026110.9|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm10_v2_chr6_+_123229843_123229863	0.0109331	Nkx2-4	ENSMUST00000112554.2|Clec4n|ENSMUSG00000023349.8|C-type lectin domain family 4, member n 	ENSMUST00000024118.4|Clec4n|ENSMUSG00000023349.8|C-type lectin domain family 4, member n 	ENSMUST00000117130.1|Clec4n|ENSMUSG00000023349.8|C-type lectin domain family 4, member n
mm10_v2_chr1_+_178798438_178798467	0.0107332	Nkx2-4	ENSMUST00000160789.1|Kif26b|ENSMUSG00000026494.6|kinesin family member 26B
mm10_v2_chr15_+_99670574_99670718	0.0100757	Nkx2-4	ENSMUST00000023758.7|Asic1|ENSMUSG00000023017.9|acid-sensing (proton-gated) ion channel 1
mm10_v2_chr14_+_48446128_48446276	0.00909644	Nkx2-4	ENSMUST00000124720.1|Tmem260|ENSMUSG00000036339.11|transmembrane protein 260
mm10_v2_chr2_+_61804453_61804538	0.0077544	Nkx2-4	ENSMUST00000048934.8|Tbr1|ENSMUSG00000035033.9|T-box brain gene 1
mm10_v2_chr6_+_94500313_94500353	0.00486896	Nkx2-4	ENSMUST00000061118.8|Slc25a26|ENSMUSG00000045100.9|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26
mm10_v2_chrX_-_140956675_140956728	0.00261357	Nkx2-4	ENSMUST00000033805.8|Psmd10|ENSMUSG00000031429.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 	ENSMUST00000112978.1|Psmd10|ENSMUSG00000031429.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10
mm10_v2_chr7_-_44670820_44670862	0.00210322	Nkx2-4	ENSMUST00000048102.7|Myh14|ENSMUSG00000030739.11|myosin, heavy polypeptide 14
mm10_v2_chr1_+_85650008_85650020	0.00167762	Nkx2-4	ENSMUST00000054279.8|Sp100|ENSMUSG00000026222.10|nuclear antigen Sp100 	ENSMUST00000147552.1|Sp100|ENSMUSG00000026222.10|nuclear antigen Sp100 	ENSMUST00000153574.1|Sp100|ENSMUSG00000026222.10|nuclear antigen Sp100 	ENSMUST00000150967.1|Sp100|ENSMUSG00000026222.10|nuclear antigen Sp100
mm10_v2_chr7_-_115824699_115824752	0.00125663	Nkx2-4	ENSMUST00000169129.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr17_-_25844514_25844565	0.000915994	Nkx2-4	ENSMUST00000176709.1|Rhot2|ENSMUSG00000025733.11|ras homolog gene family, member T2
