mm10_v2_chr13_+_51645232_51645276	1.74244	Runx3	ENSMUST00000075853.5|Cks2|ENSMUSG00000062248.5|CDC28 protein kinase regulatory subunit 2
mm10_v2_chr5_+_21424934_21425013	1.28401	Runx3	ENSMUST00000056045.4|Fam185a|ENSMUSG00000047221.5|family with sequence similarity 185, member A
mm10_v2_chr13_-_35906324_35906364	1.21477	Runx3	ENSMUST00000174230.1|Rpp40|ENSMUSG00000021418.9|ribonuclease P 40 subunit 	ENSMUST00000171686.2|Rpp40|ENSMUSG00000021418.9|ribonuclease P 40 subunit
mm10_v2_chr18_-_47368446_47368486	1.15901	Runx3	ENSMUST00000076043.6|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 	ENSMUST00000135790.1|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm10_v2_chr17_+_27556641_27556658	1.10899	Runx3	ENSMUST00000119486.1|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1 	ENSMUST00000118599.1|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1
mm10_v2_chr2_+_72476225_72476259	1.0762	Runx3	ENSMUST00000157019.1|Cdca7|ENSMUSG00000055612.9|cell division cycle associated 7
mm10_v2_chr4_-_120570252_120570299	1.07416	Runx3	ENSMUST00000030381.7|Ctps|ENSMUSG00000028633.7|cytidine 5'-triphosphate synthase
mm10_v2_chr2_+_72476159_72476212	1.06027	Runx3	ENSMUST00000102691.4|Cdca7|ENSMUSG00000055612.9|cell division cycle associated 7
mm10_v2_chr17_+_27556668_27556690	1.04852	Runx3	ENSMUST00000117254.1|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1 	ENSMUST00000118570.1|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1
mm10_v2_chr17_+_27556613_27556635	1.01171	Runx3	ENSMUST00000117600.1|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1 	ENSMUST00000114888.3|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1
mm10_v2_chr10_-_62602261_62602298	0.999702	Runx3	ENSMUST00000045866.7|Ddx21|ENSMUSG00000020075.7|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
mm10_v2_chr13_-_23551648_23551672	0.979105	Runx3	ENSMUST00000102971.1|Hist1h4f|ENSMUSG00000069274.3|histone cluster 1, H4f
mm10_v2_chr9_+_106429537_106429548	0.969252	Runx3	ENSMUST00000059802.6|Rpl29|ENSMUSG00000048758.7|ribosomal protein L29
mm10_v2_chr17_+_28328471_28328570	0.955877	Runx3	ENSMUST00000042334.8|Rpl10a|ENSMUSG00000037805.8|ribosomal protein L10A
mm10_v2_chr11_-_5878207_5878292	0.931453	Runx3	ENSMUST00000102922.3|Pold2|ENSMUSG00000020471.5|polymerase (DNA directed), delta 2, regulatory subunit
mm10_v2_chr10_-_81001338_81001378	0.889947	Runx3	ENSMUST00000099462.1|Gng7|ENSMUSG00000048240.8|guanine nucleotide binding protein (G protein), gamma 7 	ENSMUST00000118233.1|Gng7|ENSMUSG00000048240.8|guanine nucleotide binding protein (G protein), gamma 7
mm10_v2_chr9_+_106429399_106429457	0.861734	Runx3	ENSMUST00000150576.1|Rpl29|ENSMUSG00000048758.7|ribosomal protein L29
mm10_v2_chr6_-_100671126_100671178	0.828706	Runx3	ENSMUST00000089245.6|Shq1|ENSMUSG00000035378.11|SHQ1 homolog (S. cerevisiae) 	ENSMUST00000113312.2|Shq1|ENSMUSG00000035378.11|SHQ1 homolog (S. cerevisiae) 	ENSMUST00000170667.1|Shq1|ENSMUSG00000035378.11|SHQ1 homolog (S. cerevisiae)
mm10_v2_chr13_-_22041352_22041363	0.710042	Runx3	ENSMUST00000102977.2|Hist1h4i|ENSMUSG00000060639.4|histone cluster 1, H4i
mm10_v2_chr9_-_78481724_78481751	0.699777	Runx3	ENSMUST00000042235.8|Eef1a1|ENSMUSG00000037742.8|eukaryotic translation elongation factor 1 alpha 1
mm10_v2_chr10_+_128083273_128083309	0.669148	Runx3	ENSMUST00000026459.5|Atp5b|ENSMUSG00000025393.6|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit
mm10_v2_chr17_-_6961156_6961156	0.651194	Runx3	ENSMUST00000063683.6|Tagap1|ENSMUSG00000052031.7|T cell activation GTPase activating protein 1
mm10_v2_chr5_+_121397936_121398004	0.630094	Runx3	ENSMUST00000042163.8|Naa25|ENSMUSG00000042719.11|N(alpha)-acetyltransferase 25, NatB auxiliary subunit
mm10_v2_chr8_+_4243264_4243387	0.57202	Runx3	ENSMUST00000110996.1|Map2k7|ENSMUSG00000002948.12|mitogen-activated protein kinase kinase 7
mm10_v2_chr9_+_70012540_70012595	0.571725	Runx3	ENSMUST00000118198.1|Gtf2a2|ENSMUSG00000033543.11|general transcription factor II A, 2 	ENSMUST00000119905.1|Gtf2a2|ENSMUSG00000033543.11|general transcription factor II A, 2 	ENSMUST00000119413.1|Gtf2a2|ENSMUSG00000033543.11|general transcription factor II A, 2 	ENSMUST00000140305.1|Gtf2a2|ENSMUSG00000033543.11|general transcription factor II A, 2 	ENSMUST00000122087.1|Gtf2a2|ENSMUSG00000033543.11|general transcription factor II A, 2
mm10_v2_chr5_+_45493374_45493437	0.554145	Runx3	ENSMUST00000046122.6|Lap3|ENSMUSG00000039682.6|leucine aminopeptidase 3
mm10_v2_chr9_-_20898592_20898631	0.536922	Runx3	ENSMUST00000004206.8|Eif3g|ENSMUSG00000070319.5|eukaryotic translation initiation factor 3, subunit G
mm10_v2_chr15_-_95655960_95655960	0.483073	Runx3	ENSMUST00000054244.6|Dbx2|ENSMUSG00000045608.6|developing brain homeobox 2
mm10_v2_chr4_-_116627478_116627503	0.461177	Runx3	ENSMUST00000081182.4|Nasp|ENSMUSG00000028693.9|nuclear autoantigenic sperm protein (histone-binding) 	ENSMUST00000030457.5|Nasp|ENSMUSG00000028693.9|nuclear autoantigenic sperm protein (histone-binding)
mm10_v2_chr17_+_8165501_8165540	0.44222	Runx3	ENSMUST00000097419.3|Fgfr1op|ENSMUSG00000069135.5|Fgfr1 oncogene partner 	ENSMUST00000024636.8|Fgfr1op|ENSMUSG00000069135.5|Fgfr1 oncogene partner
mm10_v2_chr4_-_70410422_70410463	0.441554	Runx3	ENSMUST00000144099.1|Cdk5rap2|ENSMUSG00000039298.10|CDK5 regulatory subunit associated protein 2
mm10_v2_chr11_-_70410010_70410042	0.421045	Runx3	ENSMUST00000019065.3|Pelp1|ENSMUSG00000018921.5|proline, glutamic acid and leucine rich protein 1 	ENSMUST00000135148.1|Pelp1|ENSMUSG00000018921.5|proline, glutamic acid and leucine rich protein 1
mm10_v2_chr7_-_78783026_78783066	0.418478	Runx3	ENSMUST00000032841.5|Mrpl46|ENSMUSG00000030612.5|mitochondrial ribosomal protein L46
mm10_v2_chr7_+_78783119_78783119	0.408663	Runx3	ENSMUST00000032840.4|Mrps11|ENSMUSG00000030611.4|mitochondrial ribosomal protein S11
mm10_v2_chr1_+_40465976_40466006	0.401916	Runx3	ENSMUST00000108044.2|Il18r1|ENSMUSG00000026070.9|interleukin 18 receptor 1 	ENSMUST00000087983.2|Il18r1|ENSMUSG00000026070.9|interleukin 18 receptor 1
mm10_v2_chr11_+_75532127_75532151	0.39827	Runx3	ENSMUST00000127226.1|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2
mm10_v2_chr13_-_21832194_21832198	0.397284	Runx3	ENSMUST00000102979.1|Hist1h4n|ENSMUSG00000069305.3|histone cluster 1, H4n
mm10_v2_chr11_-_84916338_84916371	0.397169	Runx3	ENSMUST00000103195.4|Znhit3|ENSMUSG00000020526.6|zinc finger, HIT type 3
mm10_v2_chr7_+_28808795_28808832	0.383879	Runx3	ENSMUST00000172529.1|Hnrnpl|ENSMUSG00000015165.10|heterogeneous nuclear ribonucleoprotein L
mm10_v2_chr7_-_141437587_141437650	0.373735	Runx3	ENSMUST00000172654.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000106006.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm10_v2_chr7_+_127091426_127091450	0.370559	Runx3	ENSMUST00000056288.5|AI467606|ENSMUSG00000045165.5|expressed sequence AI467606
mm10_v2_chr1_+_74278550_74278550	0.339563	Runx3	ENSMUST00000077985.3|Gpbar1|ENSMUSG00000064272.3|G protein-coupled bile acid receptor 1
mm10_v2_chr10_+_79755103_79755126	0.338388	Runx3	ENSMUST00000020577.2|Fgf22|ENSMUSG00000020327.3|fibroblast growth factor 22
mm10_v2_chr11_-_100193246_100193256	0.336732	Runx3	ENSMUST00000059707.2|Krt9|ENSMUSG00000051617.3|keratin 9
mm10_v2_chr6_-_99632376_99632376	0.329649	Runx3	ENSMUST00000176255.1|Gm20696|ENSMUSG00000030068.3|predicted gene 20696
mm10_v2_chr13_+_37825975_37826003	0.329428	Runx3	ENSMUST00000138043.1|Rreb1|ENSMUSG00000039087.10|ras responsive element binding protein 1
mm10_v2_chr13_-_25020289_25020379	0.326302	Runx3	ENSMUST00000021772.2|Mrs2|ENSMUSG00000021339.3|MRS2 magnesium homeostasis factor homolog (S. cerevisiae)
mm10_v2_chr15_+_40655020_40655054	0.306891	Runx3	ENSMUST00000053467.4|Zfpm2|ENSMUSG00000022306.8|zinc finger protein, multitype 2
mm10_v2_chr11_-_100207507_100207548	0.296444	Runx3	ENSMUST00000007272.7|Krt14|ENSMUSG00000045545.8|keratin 14
mm10_v2_chr10_+_76531593_76531635	0.291259	Runx3	ENSMUST00000048678.6|Lss|ENSMUSG00000033105.6|lanosterol synthase
mm10_v2_chr3_+_122245557_122245578	0.287996	Runx3	ENSMUST00000029769.7|Gclm|ENSMUSG00000028124.9|glutamate-cysteine ligase, modifier subunit
mm10_v2_chr9_-_108094459_108094487	0.27919	Runx3	ENSMUST00000081309.7|Apeh|ENSMUSG00000032590.9|acylpeptide hydrolase
mm10_v2_chr11_-_70220969_70221027	0.234981	Runx3	ENSMUST00000060010.2|Slc16a13|ENSMUSG00000044367.6|solute carrier family 16 (monocarboxylic acid transporters), member 13
mm10_v2_chr18_-_77713978_77714010	0.222206	Runx3	ENSMUST00000074653.4|8030462N17Rik|ENSMUSG00000047466.9|RIKEN cDNA 8030462N17 gene
mm10_v2_chr7_-_25816616_25816653	0.201025	Runx3	ENSMUST00000043314.3|Cyp2s1|ENSMUSG00000040703.5|cytochrome P450, family 2, subfamily s, polypeptide 1
mm10_v2_chr2_-_50296680_50296801	0.196812	Runx3	ENSMUST00000144143.1|Mmadhc|ENSMUSG00000026766.10|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria 	ENSMUST00000102769.4|Mmadhc|ENSMUSG00000026766.10|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria 	ENSMUST00000133768.1|Mmadhc|ENSMUSG00000026766.10|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria
mm10_v2_chr11_-_87875524_87875536	0.176573	Runx3	ENSMUST00000049768.3|Epx|ENSMUSG00000052234.2|eosinophil peroxidase
mm10_v2_chr1_+_40465552_40465698	0.174996	Runx3	ENSMUST00000167723.1|Il18r1|ENSMUSG00000026070.9|interleukin 18 receptor 1
mm10_v2_chr7_-_102494773_102494773	0.17216	Runx3	ENSMUST00000058750.3|Olfr545|ENSMUSG00000044824.5|olfactory receptor 545
mm10_v2_chr13_-_115101909_115101984	0.17054	Runx3	ENSMUST00000061673.7|Itga1|ENSMUSG00000042284.9|integrin alpha 1
mm10_v2_chr11_+_75679259_75679327	0.163055	Runx3	ENSMUST00000017920.7|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian) 	ENSMUST00000108426.1|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian) 	ENSMUST00000108425.1|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian) 	ENSMUST00000093115.3|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian)
mm10_v2_chr3_+_122245625_122245722	0.162397	Runx3	ENSMUST00000178826.1|Gclm|ENSMUSG00000028124.9|glutamate-cysteine ligase, modifier subunit
mm10_v2_chr3_+_121953213_121953295	0.144108	Runx3	ENSMUST00000037958.7|Arhgap29|ENSMUSG00000039831.10|Rho GTPase activating protein 29 	ENSMUST00000128366.1|Arhgap29|ENSMUSG00000039831.10|Rho GTPase activating protein 29
mm10_v2_chr7_+_141216626_141216700	0.143975	Runx3	ENSMUST00000141804.1|Rassf7|ENSMUSG00000038618.5|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7 	ENSMUST00000148975.1|Rassf7|ENSMUSG00000038618.5|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
mm10_v2_chrX_-_147554050_147554087	0.129138	Runx3	ENSMUST00000112819.2|Lrch2|ENSMUSG00000031290.8|leucine-rich repeats and calponin homology (CH) domain containing 2 	ENSMUST00000136789.1|Lrch2|ENSMUSG00000031290.8|leucine-rich repeats and calponin homology (CH) domain containing 2
mm10_v2_chr2_+_155517948_155518107	0.115277	Runx3	ENSMUST00000029135.8|Acss2|ENSMUSG00000027605.12|acyl-CoA synthetase short-chain family member 2 	ENSMUST00000065973.2|Acss2|ENSMUSG00000027605.12|acyl-CoA synthetase short-chain family member 2 	ENSMUST00000103142.5|Acss2|ENSMUSG00000027605.12|acyl-CoA synthetase short-chain family member 2
mm10_v2_chr7_-_142095266_142095306	0.111008	Runx3	ENSMUST00000039926.3|Dusp8|ENSMUSG00000037887.5|dual specificity phosphatase 8
mm10_v2_chr19_+_5038826_5038938	0.0903144	Runx3	ENSMUST00000053705.6|B3gnt1|ENSMUSG00000047379.6|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1
mm10_v2_chr9_+_121719403_121719471	0.0791562	Runx3	ENSMUST00000182225.1|Nktr|ENSMUSG00000032525.8|natural killer tumor recognition sequence
mm10_v2_chr16_+_92301266_92301323	0.0770085	Runx3	ENSMUST00000063641.4|Smim11|ENSMUSG00000051989.5|small integral membrane protein 11 	ENSMUST00000118064.1|Smim11|ENSMUSG00000051989.5|small integral membrane protein 11
mm10_v2_chr7_+_3617357_3617389	0.075201	Runx3	ENSMUST00000076657.4|Ndufa3|ENSMUSG00000035674.7|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3 	ENSMUST00000108644.1|Ndufa3|ENSMUSG00000035674.7|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3
mm10_v2_chr18_-_34651703_34651741	0.0740025	Runx3	ENSMUST00000025228.5|Cdc23|ENSMUSG00000024370.10|CDC23 cell division cycle 23 	ENSMUST00000133181.1|Cdc23|ENSMUSG00000024370.10|CDC23 cell division cycle 23
mm10_v2_chr10_-_116581478_116581511	0.0660584	Runx3	ENSMUST00000105267.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000105265.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000167706.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000168036.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000169921.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2 	ENSMUST00000020374.5|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2
mm10_v2_chr13_+_37826018_37826044	0.0604391	Runx3	ENSMUST00000110238.2|Rreb1|ENSMUSG00000039087.10|ras responsive element binding protein 1
mm10_v2_chr9_+_110532501_110532600	0.0593702	Runx3	ENSMUST00000153838.2|Setd2|ENSMUSG00000044791.10|SET domain containing 2
mm10_v2_chr7_-_35802968_35803007	0.0558777	Runx3	ENSMUST00000061586.4|Zfp507|ENSMUSG00000044452.4|zinc finger protein 507
mm10_v2_chr7_-_44974781_44974851	0.0513201	Runx3	ENSMUST00000063761.7|Cpt1c|ENSMUSG00000007783.9|carnitine palmitoyltransferase 1c
mm10_v2_chr17_+_35879770_35879824	0.0448771	Runx3	ENSMUST00000025292.8|Dhx16|ENSMUSG00000024422.8|DEAH (Asp-Glu-Ala-His) box polypeptide 16
mm10_v2_chr12_+_98628126_98628202	0.0354087	Runx3	ENSMUST00000048402.5|Spata7|ENSMUSG00000021007.7|spermatogenesis associated 7 	ENSMUST00000101144.3|Spata7|ENSMUSG00000021007.7|spermatogenesis associated 7 	ENSMUST00000101146.3|Spata7|ENSMUSG00000021007.7|spermatogenesis associated 7
mm10_v2_chr11_-_32267547_32267707	0.03477	Runx3	ENSMUST00000109389.2|Nprl3|ENSMUSG00000020289.9|nitrogen permease regulator-like 3 	ENSMUST00000129010.1|Nprl3|ENSMUSG00000020289.9|nitrogen permease regulator-like 3 	ENSMUST00000020530.5|Nprl3|ENSMUSG00000020289.9|nitrogen permease regulator-like 3
mm10_v2_chr8_-_115706994_115707096	0.0280807	Runx3	ENSMUST00000069009.6|Maf|ENSMUSG00000055435.6|avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog
mm10_v2_chr3_+_95658771_95658857	0.0271444	Runx3	ENSMUST00000178686.1|Mcl1|ENSMUSG00000038612.10|myeloid cell leukemia sequence 1
mm10_v2_chr11_+_75532099_75532125	0.0248275	Runx3	ENSMUST00000169547.2|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2
mm10_v2_chr8_-_54724474_54724504	0.0222007	Runx3	ENSMUST00000175915.1|Wdr17|ENSMUSG00000039375.10|WD repeat domain 17
mm10_v2_chr17_-_23599487_23599547	0.0215951	Runx3	ENSMUST00000057029.4|Zfp13|ENSMUSG00000062012.7|zinc finger protein 13
mm10_v2_chr5_-_21424664_21424686	0.016189	Runx3	ENSMUST00000115245.1|Ccdc146|ENSMUSG00000064280.7|coiled-coil domain containing 146 	ENSMUST00000030552.5|Ccdc146|ENSMUSG00000064280.7|coiled-coil domain containing 146
mm10_v2_chrX_-_73458990_73459044	0.0111108	Runx3	ENSMUST00000033737.8|Haus7|ENSMUSG00000031371.8|HAUS augmin-like complex, subunit 7 	ENSMUST00000077243.4|Haus7|ENSMUSG00000031371.8|HAUS augmin-like complex, subunit 7
