mm10_v2_chr15_+_98571004_98571026	0.930652	Six3_Six1_Six2	ENSMUST00000023728.6|4930415O20Rik|ENSMUSG00000022993.6|RIKEN cDNA 4930415O20 gene
mm10_v2_chr1_+_139454747_139454825	0.308708	Six3_Six1_Six2	ENSMUST00000053364.8|Aspm|ENSMUSG00000033952.8|asp (abnormal spindle)-like, microcephaly associated (Drosophila) 	ENSMUST00000097554.3|Aspm|ENSMUSG00000033952.8|asp (abnormal spindle)-like, microcephaly associated (Drosophila)
mm10_v2_chr2_+_31245801_31245900	0.207045	Six3_Six1_Six2	ENSMUST00000000199.7|Ncs1|ENSMUSG00000062661.6|neuronal calcium sensor 1
mm10_v2_chr17_-_40914350_40914350	0.205572	Six3_Six1_Six2	ENSMUST00000166343.1|Glyatl3|ENSMUSG00000091043.1|glycine-N-acyltransferase-like 3
mm10_v2_chr14_+_75242287_75242354	0.167453	Six3_Six1_Six2	ENSMUST00000022576.8|Cpb2|ENSMUSG00000021999.8|carboxypeptidase B2 (plasma)
mm10_v2_chr2_+_127336152_127336166	0.159068	Six3_Six1_Six2	ENSMUST00000028846.6|Dusp2|ENSMUSG00000027368.6|dual specificity phosphatase 2
mm10_v2_chr7_+_30232310_30232350	0.15739	Six3_Six1_Six2	ENSMUST00000108193.1|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I 	ENSMUST00000108192.1|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I
mm10_v2_chr3_-_37724321_37724490	0.153796	Six3_Six1_Six2	ENSMUST00000108105.1|Gm5148|ENSMUSG00000058174.7|predicted gene 5148 	ENSMUST00000079755.4|Gm5148|ENSMUSG00000058174.7|predicted gene 5148 	ENSMUST00000099128.1|Gm5148|ENSMUSG00000058174.7|predicted gene 5148
mm10_v2_chr7_+_30231884_30231948	0.150974	Six3_Six1_Six2	ENSMUST00000019882.9|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I
mm10_v2_chr19_-_44135816_44135881	0.143134	Six3_Six1_Six2	ENSMUST00000026218.5|Cwf19l1|ENSMUSG00000025200.6|CWF19-like 1, cell cycle control (S. pombe)
mm10_v2_chr14_+_57798182_57798218	0.134332	Six3_Six1_Six2	ENSMUST00000111269.1|Sap18|ENSMUSG00000021963.10|Sin3-associated polypeptide 18
mm10_v2_chr6_+_123123313_123123342	0.127583	Six3_Six1_Six2	ENSMUST00000041779.6|Clec4a2|ENSMUSG00000030148.9|C-type lectin domain family 4, member a2
mm10_v2_chrX_-_142966709_142966734	0.126951	Six3_Six1_Six2	ENSMUST00000041317.2|Ammecr1|ENSMUSG00000042225.3|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
mm10_v2_chr1_-_65123108_65123214	0.109021	Six3_Six1_Six2	ENSMUST00000050047.3|D630023F18Rik|ENSMUSG00000044816.4|RIKEN cDNA D630023F18 gene 	ENSMUST00000148020.1|D630023F18Rik|ENSMUSG00000044816.4|RIKEN cDNA D630023F18 gene
mm10_v2_chr10_+_23949516_23949516	0.108756	Six3_Six1_Six2	ENSMUST00000045152.4|Taar3|ENSMUSG00000069708.2|trace amine-associated receptor 3
mm10_v2_chr5_+_138820080_138820080	0.106977	Six3_Six1_Six2	ENSMUST00000179205.1|Gm5294|ENSMUSG00000094504.1|predicted gene 5294
mm10_v2_chr7_+_43690418_43690418	0.105793	Six3_Six1_Six2	ENSMUST00000056329.6|Klk14|ENSMUSG00000044737.6|kallikrein related-peptidase 14
mm10_v2_chr6_+_123123423_123123484	0.100426	Six3_Six1_Six2	ENSMUST00000032248.7|Clec4a2|ENSMUSG00000030148.9|C-type lectin domain family 4, member a2
mm10_v2_chr15_-_82244716_82244755	0.094283	Six3_Six1_Six2	ENSMUST00000089155.4|Cenpm|ENSMUSG00000068101.4|centromere protein M 	ENSMUST00000089157.3|Cenpm|ENSMUSG00000068101.4|centromere protein M
mm10_v2_chr13_+_104229366_104229388	0.0927957	Six3_Six1_Six2	ENSMUST00000022227.6|Cenpk|ENSMUSG00000021714.8|centromere protein K
mm10_v2_chr7_-_101903783_101903786	0.0768803	Six3_Six1_Six2	ENSMUST00000106969.1|Tomt|ENSMUSG00000078630.1|transmembrane O-methyltransferase
mm10_v2_chr1_+_136467958_136467958	0.0710285	Six3_Six1_Six2	ENSMUST00000047817.6|Kif14|ENSMUSG00000041498.7|kinesin family member 14
mm10_v2_chr7_-_30232186_30232272	0.0702007	Six3_Six1_Six2	ENSMUST00000006254.5|Tbcb|ENSMUSG00000006095.6|tubulin folding cofactor B
mm10_v2_chr7_-_80115294_80115392	0.0682443	Six3_Six1_Six2	ENSMUST00000107384.3|Idh2|ENSMUSG00000030541.10|isocitrate dehydrogenase 2 (NADP+), mitochondrial
mm10_v2_chr14_+_55765956_55765999	0.0658764	Six3_Six1_Six2	ENSMUST00000057569.3|Ltb4r1|ENSMUSG00000046908.5|leukotriene B4 receptor 1
mm10_v2_chr9_+_65141154_65141198	0.0647133	Six3_Six1_Six2	ENSMUST00000034961.4|Igdcc3|ENSMUSG00000032394.5|immunoglobulin superfamily, DCC subclass, member 3
mm10_v2_chr19_-_23075853_23075904	0.0624164	Six3_Six1_Six2	ENSMUST00000181623.1|C330002G04Rik|ENSMUSG00000097930.1|RIKEN cDNA C330002G04 gene
mm10_v2_chr6_-_52218686_52218716	0.0624084	Six3_Six1_Six2	ENSMUST00000134367.2|Hoxa7|ENSMUSG00000038236.6|homeobox A7
mm10_v2_chr15_+_82252397_82252475	0.0603204	Six3_Six1_Six2	ENSMUST00000136948.1|1500009C09Rik|ENSMUSG00000068099.4|RIKEN cDNA 1500009C09 gene
mm10_v2_chr8_-_4275886_4275915	0.0602419	Six3_Six1_Six2	ENSMUST00000003029.7|Timm44|ENSMUSG00000002949.8|translocase of inner mitochondrial membrane 44
mm10_v2_chr8_+_69832633_69832712	0.0580642	Six3_Six1_Six2	ENSMUST00000131637.2|Pbx4|ENSMUSG00000031860.11|pre B cell leukemia homeobox 4 	ENSMUST00000081503.6|Pbx4|ENSMUSG00000031860.11|pre B cell leukemia homeobox 4
mm10_v2_chr17_-_53539411_53539459	0.0513382	Six3_Six1_Six2	ENSMUST00000056198.3|Pp2d1|ENSMUSG00000044957.3|protein phosphatase 2C-like domain containing 1
mm10_v2_chr10_-_128180265_128180307	0.047865	Six3_Six1_Six2	ENSMUST00000099139.1|Rbms2|ENSMUSG00000040043.9|RNA binding motif, single stranded interacting protein 2
mm10_v2_chr15_-_75894474_75894529	0.0460847	Six3_Six1_Six2	ENSMUST00000023237.6|Naprt1|ENSMUSG00000022574.6|nicotinate phosphoribosyltransferase domain containing 1
mm10_v2_chr7_-_119459266_119459280	0.0457654	Six3_Six1_Six2	ENSMUST00000033255.5|Gp2|ENSMUSG00000030954.9|glycoprotein 2 (zymogen granule membrane)
mm10_v2_chr2_+_131491764_131491943	0.0457517	Six3_Six1_Six2	ENSMUST00000028806.5|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110179.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110189.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110182.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110183.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110186.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110188.1|Smox|ENSMUSG00000027333.12|spermine oxidase
mm10_v2_chr6_+_38534823_38534872	0.0454959	Six3_Six1_Six2	ENSMUST00000019833.4|1110001J03Rik|ENSMUSG00000019689.4|RIKEN cDNA 1110001J03 gene
mm10_v2_chr5_+_21543525_21543590	0.0442595	Six3_Six1_Six2	ENSMUST00000035651.4|Lrrc17|ENSMUSG00000039883.4|leucine rich repeat containing 17
mm10_v2_chr9_+_32393963_32393985	0.0435068	Six3_Six1_Six2	ENSMUST00000172015.1|Kcnj1|ENSMUSG00000041248.8|potassium inwardly-rectifying channel, subfamily J, member 1
mm10_v2_chr11_-_9039585_9039601	0.0429167	Six3_Six1_Six2	ENSMUST00000043377.5|Sun3|ENSMUSG00000040985.7|Sad1 and UNC84 domain containing 3
mm10_v2_chr6_-_115675871_115675964	0.0422222	Six3_Six1_Six2	ENSMUST00000112949.1|Raf1|ENSMUSG00000000441.11|v-raf-leukemia viral oncogene 1
mm10_v2_chr3_-_85722474_85722474	0.040882	Six3_Six1_Six2	ENSMUST00000119077.1|Fam160a1|ENSMUSG00000051000.11|family with sequence similarity 160, member A1
mm10_v2_chr8_+_84831522_84831522	0.0394376	Six3_Six1_Six2	ENSMUST00000036734.5|Gadd45gip1|ENSMUSG00000033751.5|growth arrest and DNA-damage-inducible, gamma interacting protein 1
mm10_v2_chr7_+_131032061_131032076	0.0392891	Six3_Six1_Six2	ENSMUST00000084509.3|Dmbt1|ENSMUSG00000047517.9|deleted in malignant brain tumors 1
mm10_v2_chr17_+_35241838_35241870	0.0385671	Six3_Six1_Six2	ENSMUST00000173731.1|Ddx39b|ENSMUSG00000019432.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
mm10_v2_chr17_+_56717759_56717819	0.0369975	Six3_Six1_Six2	ENSMUST00000002452.6|Ndufa11|ENSMUSG00000002379.6|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11
mm10_v2_chr13_-_74292297_74292331	0.0363233	Six3_Six1_Six2	ENSMUST00000109640.1|Ahrr|ENSMUSG00000021575.9|aryl-hydrocarbon receptor repressor 	ENSMUST00000022059.7|Ahrr|ENSMUSG00000021575.9|aryl-hydrocarbon receptor repressor
mm10_v2_chr7_-_126676428_126676439	0.0351376	Six3_Six1_Six2	ENSMUST00000106373.1|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1
mm10_v2_chr8_-_106573461_106573462	0.0344878	Six3_Six1_Six2	ENSMUST00000073722.5|Gm10073|ENSMUSG00000060019.5|predicted pseudogene 10073
mm10_v2_chr11_-_69695521_69695713	0.0333314	Six3_Six1_Six2	ENSMUST00000181261.1|Tnfsf12|ENSMUSG00000097328.1|tumor necrosis factor (ligand) superfamily, member 12
mm10_v2_chr12_+_84773262_84773319	0.030896	Six3_Six1_Six2	ENSMUST00000021667.5|Isca2|ENSMUSG00000021241.6|iron-sulfur cluster assembly 2 homolog (S. cerevisiae)
mm10_v2_chr10_-_78487842_78487842	0.0305128	Six3_Six1_Six2	ENSMUST00000069431.4|Gm9978|ENSMUSG00000055704.4|predicted gene 9978
mm10_v2_chr11_-_99230998_99231019	0.029983	Six3_Six1_Six2	ENSMUST00000103133.3|Smarce1|ENSMUSG00000037935.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
mm10_v2_chr7_+_30977043_30977071	0.0294063	Six3_Six1_Six2	ENSMUST00000058093.4|Fam187b|ENSMUSG00000046826.5|family with sequence similarity 187, member B
mm10_v2_chr14_+_57798156_57798180	0.0289584	Six3_Six1_Six2	ENSMUST00000128764.1|Sap18|ENSMUSG00000021963.10|Sin3-associated polypeptide 18
mm10_v2_chr10_+_24595623_24595780	0.0274146	Six3_Six1_Six2	ENSMUST00000176228.1|Ctgf|ENSMUSG00000019997.5|connective tissue growth factor 	ENSMUST00000129142.1|Ctgf|ENSMUSG00000019997.5|connective tissue growth factor
mm10_v2_chr1_-_59094885_59094903	0.027328	Six3_Six1_Six2	ENSMUST00000097080.3|Als2cr11|ENSMUSG00000072295.5|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 11 (human)
mm10_v2_chr16_-_11203259_11203331	0.0266666	Six3_Six1_Six2	ENSMUST00000119953.1|Rsl1d1|ENSMUSG00000005846.11|ribosomal L1 domain containing 1
mm10_v2_chr4_-_43030440_43030593	0.0254723	Six3_Six1_Six2	ENSMUST00000135660.1|Stoml2|ENSMUSG00000028455.9|stomatin (Epb7.2)-like 2
mm10_v2_chr5_+_104046869_104046899	0.0243705	Six3_Six1_Six2	ENSMUST00000031250.7|Nudt9|ENSMUSG00000029310.7|nudix (nucleoside diphosphate linked moiety X)-type motif 9
mm10_v2_chr19_+_8764934_8765034	0.0225136	Six3_Six1_Six2	ENSMUST00000184663.1|Nxf1|ENSMUSG00000010097.7|nuclear RNA export factor 1
mm10_v2_chr7_-_100855403_100855440	0.022313	Six3_Six1_Six2	ENSMUST00000156855.1|Relt|ENSMUSG00000008318.3|RELT tumor necrosis factor receptor
mm10_v2_chr17_-_36951636_36951741	0.0191936	Six3_Six1_Six2	ENSMUST00000040402.7|Ppp1r11|ENSMUSG00000036398.7|protein phosphatase 1, regulatory (inhibitor) subunit 11 	ENSMUST00000174711.1|Ppp1r11|ENSMUSG00000036398.7|protein phosphatase 1, regulatory (inhibitor) subunit 11
mm10_v2_chr3_+_94398517_94398538	0.0181674	Six3_Six1_Six2	ENSMUST00000050975.3|Lingo4|ENSMUSG00000044505.3|leucine rich repeat and Ig domain containing 4
mm10_v2_chr19_+_46341118_46341122	0.0175149	Six3_Six1_Six2	ENSMUST00000128041.1|Tmem180|ENSMUSG00000025227.8|transmembrane protein 180
mm10_v2_chr4_-_116651644_116651680	0.0172334	Six3_Six1_Six2	ENSMUST00000030455.8|Akr1a1|ENSMUSG00000028692.8|aldo-keto reductase family 1, member A1 (aldehyde reductase)
mm10_v2_chr5_+_140607334_140607352	0.0163262	Six3_Six1_Six2	ENSMUST00000031555.1|Lfng|ENSMUSG00000029570.1|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm10_v2_chr19_-_55315980_55316038	0.0148787	Six3_Six1_Six2	ENSMUST00000076891.5|Zdhhc6|ENSMUSG00000024982.9|zinc finger, DHHC domain containing 6
mm10_v2_chrX_-_167102059_167102090	0.0142155	Six3_Six1_Six2	ENSMUST00000146929.1|Gm15232|ENSMUSG00000084806.1|predicted gene 15232
mm10_v2_chr16_+_22920222_22920266	0.0141647	Six3_Six1_Six2	ENSMUST00000023587.4|Fetub|ENSMUSG00000022871.6|fetuin beta 	ENSMUST00000116625.2|Fetub|ENSMUSG00000022871.6|fetuin beta
mm10_v2_chr17_+_35241746_35241778	0.0138626	Six3_Six1_Six2	ENSMUST00000068056.5|Ddx39b|ENSMUSG00000019432.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENSMUST00000174757.1|Ddx39b|ENSMUSG00000019432.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
mm10_v2_chr16_-_45724600_45724619	0.0114498	Six3_Six1_Six2	ENSMUST00000096057.4|Tagln3|ENSMUSG00000022658.10|transgelin 3
mm10_v2_chr5_-_106926245_106926321	0.0111533	Six3_Six1_Six2	ENSMUST00000117588.1|Hfm1|ENSMUSG00000043410.10|HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)
mm10_v2_chr2_+_117249725_117249754	0.0109328	Six3_Six1_Six2	ENSMUST00000028825.4|Fam98b|ENSMUSG00000027349.5|family with sequence similarity 98, member B
mm10_v2_chr9_+_106222598_106222629	0.0103075	Six3_Six1_Six2	ENSMUST00000062241.9|Tlr9|ENSMUSG00000045322.9|toll-like receptor 9
mm10_v2_chr19_+_55316313_55316367	0.00996171	Six3_Six1_Six2	ENSMUST00000095950.2|Vti1a|ENSMUSG00000024983.9|vesicle transport through interaction with t-SNAREs 1A
mm10_v2_chr4_-_32950813_32950866	0.0094906	Six3_Six1_Six2	ENSMUST00000084750.1|Ankrd6|ENSMUSG00000040183.7|ankyrin repeat domain 6 	ENSMUST00000084748.2|Ankrd6|ENSMUSG00000040183.7|ankyrin repeat domain 6
mm10_v2_chr7_-_141168671_141168936	0.00711842	Six3_Six1_Six2	ENSMUST00000106033.3|Rnh1|ENSMUSG00000038650.8|ribonuclease/angiogenin inhibitor 1
mm10_v2_chr1_-_119504736_119504795	0.00679655	Six3_Six1_Six2	ENSMUST00000004565.8|Ralb|ENSMUSG00000004451.8|v-ral simian leukemia viral oncogene homolog B (ras related)
mm10_v2_chr1_+_165485168_165485206	0.00562423	Six3_Six1_Six2	ENSMUST00000111440.1|Adcy10|ENSMUSG00000026567.10|adenylate cyclase 10 	ENSMUST00000027852.8|Adcy10|ENSMUSG00000026567.10|adenylate cyclase 10 	ENSMUST00000111439.1|Adcy10|ENSMUSG00000026567.10|adenylate cyclase 10
mm10_v2_chr1_-_153851189_153851198	0.00562166	Six3_Six1_Six2	ENSMUST00000059607.6|5830403L16Rik|ENSMUSG00000045968.6|RIKEN cDNA 5830403L16 gene
mm10_v2_chr9_+_119341487_119341515	0.00416677	Six3_Six1_Six2	ENSMUST00000175743.1|Acaa1a|ENSMUSG00000036138.10|acetyl-Coenzyme A acyltransferase 1A 	ENSMUST00000176397.1|Acaa1a|ENSMUSG00000036138.10|acetyl-Coenzyme A acyltransferase 1A
mm10_v2_chr15_+_38661904_38661981	0.00376189	Six3_Six1_Six2	ENSMUST00000022904.6|Atp6v1c1|ENSMUSG00000022295.7|ATPase, H+ transporting, lysosomal V1 subunit C1
mm10_v2_chr7_+_87803815_87803815	0.00322902	Six3_Six1_Six2	ENSMUST00000125009.1|Grm5|ENSMUSG00000049583.8|glutamate receptor, metabotropic 5 	ENSMUST00000155358.1|Grm5|ENSMUSG00000049583.8|glutamate receptor, metabotropic 5
mm10_v2_chr6_+_48537560_48537622	0.00322662	Six3_Six1_Six2	ENSMUST00000040361.5|Atp6v0e2|ENSMUSG00000039347.5|ATPase, H+ transporting, lysosomal V0 subunit E2
mm10_v2_chr1_+_60746358_60746427	0.00286182	Six3_Six1_Six2	ENSMUST00000027165.2|Cd28|ENSMUSG00000026012.2|CD28 antigen
mm10_v2_chr8_-_22653406_22653458	0.0010648	Six3_Six1_Six2	ENSMUST00000033938.5|Polb|ENSMUSG00000031536.5|polymerase (DNA directed), beta
mm10_v2_chr2_-_119029359_119029389	0.000122073	Six3_Six1_Six2	ENSMUST00000110833.1|Ccdc32|ENSMUSG00000039983.7|coiled-coil domain containing 32
