mm10_v2_chr6_+_14901344_14901364	0.248093	UAAGACG	ENSMUST00000115477.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr4_+_17853451_17853474	0.246253	UAAGACG	ENSMUST00000029881.3|Mmp16|ENSMUSG00000028226.9|matrix metallopeptidase 16
mm10_v2_chr17_+_29093763_29093781	0.235898	UAAGACG	ENSMUST00000023829.6|Cdkn1a|ENSMUSG00000023067.7|cyclin-dependent kinase inhibitor 1A (P21)
mm10_v2_chr19_+_41482632_41482688	0.230144	UAAGACG	ENSMUST00000067795.5|Lcor|ENSMUSG00000025019.9|ligand dependent nuclear receptor corepressor
mm10_v2_chr11_+_98907801_98907824	0.224501	UAAGACG	ENSMUST00000092706.6|Cdc6|ENSMUSG00000017499.9|cell division cycle 6
mm10_v2_chr1_-_21961581_21961581	0.208889	UAAGACG	ENSMUST00000029667.6|Kcnq5|ENSMUSG00000028033.10|potassium voltage-gated channel, subfamily Q, member 5 	ENSMUST00000173058.1|Kcnq5|ENSMUSG00000028033.10|potassium voltage-gated channel, subfamily Q, member 5 	ENSMUST00000173404.1|Kcnq5|ENSMUSG00000028033.10|potassium voltage-gated channel, subfamily Q, member 5
mm10_v2_chr4_-_91372028_91372069	0.180451	UAAGACG	ENSMUST00000107110.1|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000008633.8|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000107118.1|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chr17_+_83350925_83350998	0.176245	UAAGACG	ENSMUST00000096766.4|Eml4|ENSMUSG00000032624.9|echinoderm microtubule associated protein like 4 	ENSMUST00000112363.2|Eml4|ENSMUSG00000032624.9|echinoderm microtubule associated protein like 4 	ENSMUST00000049503.8|Eml4|ENSMUSG00000032624.9|echinoderm microtubule associated protein like 4
mm10_v2_chr9_+_72532214_72532271	0.156286	UAAGACG	ENSMUST00000163401.2|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7 	ENSMUST00000093820.3|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7
mm10_v2_chr7_-_78578308_78578408	0.134296	UAAGACG	ENSMUST00000039431.7|Ntrk3|ENSMUSG00000059146.6|neurotrophic tyrosine kinase, receptor, type 3
mm10_v2_chr6_-_99666762_99666786	0.133575	UAAGACG	ENSMUST00000032151.2|Eif4e3|ENSMUSG00000093661.1|eukaryotic translation initiation factor 4E member 3
mm10_v2_chr3_+_137864573_137864613	0.131779	UAAGACG	ENSMUST00000174561.1|H2afz|ENSMUSG00000037894.7|H2A histone family, member Z 	ENSMUST00000173790.1|H2afz|ENSMUSG00000037894.7|H2A histone family, member Z
mm10_v2_chr11_+_68691906_68691915	0.119769	UAAGACG	ENSMUST00000102611.3|Myh10|ENSMUSG00000020900.9|myosin, heavy polypeptide 10, non-muscle
mm10_v2_chr10_-_45470201_45470260	0.114817	UAAGACG	ENSMUST00000079390.6|Lin28b|ENSMUSG00000063804.7|lin-28 homolog B (C. elegans)
mm10_v2_chr19_+_21778325_21778363	0.113853	UAAGACG	ENSMUST00000096194.2|Tmem2|ENSMUSG00000024754.6|transmembrane protein 2 	ENSMUST00000025663.6|Tmem2|ENSMUSG00000024754.6|transmembrane protein 2
mm10_v2_chr9_-_78481724_78481751	0.113818	UAAGACG	ENSMUST00000042235.8|Eef1a1|ENSMUSG00000037742.8|eukaryotic translation elongation factor 1 alpha 1
mm10_v2_chr10_-_68278713_68278735	0.112104	UAAGACG	ENSMUST00000020106.7|Arid5b|ENSMUSG00000019947.9|AT rich interactive domain 5B (MRF1-like)
mm10_v2_chr12_-_108003594_108003613	0.110236	UAAGACG	ENSMUST00000066060.4|Bcl11b|ENSMUSG00000048251.9|B cell leukemia/lymphoma 11B
mm10_v2_chr7_+_89404356_89404367	0.104046	UAAGACG	ENSMUST00000058755.3|Fzd4|ENSMUSG00000049791.3|frizzled homolog 4 (Drosophila)
mm10_v2_chr1_-_119837613_119837673	0.0953533	UAAGACG	ENSMUST00000064091.5|Ptpn4|ENSMUSG00000026384.7|protein tyrosine phosphatase, non-receptor type 4
mm10_v2_chr12_-_13249198_13249224	0.0935095	UAAGACG	ENSMUST00000071103.8|Ddx1|ENSMUSG00000037149.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1
mm10_v2_chr4_-_119294520_119294604	0.0914656	UAAGACG	ENSMUST00000079644.6|Ybx1|ENSMUSG00000028639.8|Y box protein 1
mm10_v2_chr7_+_130577334_130577484	0.0876309	UAAGACG	ENSMUST00000059145.7|Tacc2|ENSMUSG00000030852.9|transforming, acidic coiled-coil containing protein 2 	ENSMUST00000084513.4|Tacc2|ENSMUSG00000030852.9|transforming, acidic coiled-coil containing protein 2
mm10_v2_chr6_+_71707561_71707561	0.0856528	UAAGACG	ENSMUST00000121469.1|Reep1|ENSMUSG00000052852.7|receptor accessory protein 1
mm10_v2_chr1_-_97661950_97662074	0.0849398	UAAGACG	ENSMUST00000053033.7|D1Ertd622e|ENSMUSG00000044768.10|DNA segment, Chr 1, ERATO Doi 622, expressed 	ENSMUST00000149927.1|D1Ertd622e|ENSMUSG00000044768.10|DNA segment, Chr 1, ERATO Doi 622, expressed
mm10_v2_chr14_+_69029289_69029414	0.0837078	UAAGACG	ENSMUST00000014957.8|Stc1|ENSMUSG00000014813.8|stanniocalcin 1
mm10_v2_chr17_-_6655939_6655939	0.0790215	UAAGACG	ENSMUST00000179554.1|Dynlt1f|ENSMUSG00000095677.1|dynein light chain Tctex-type 1F
mm10_v2_chr2_+_122028544_122028563	0.0779847	UAAGACG	ENSMUST00000028668.7|Eif3j1|ENSMUSG00000027236.8|eukaryotic translation initiation factor 3, subunit J1
mm10_v2_chr9_-_72111827_72111895	0.075077	UAAGACG	ENSMUST00000183404.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12 	ENSMUST00000184783.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr3_-_122984404_122984512	0.0702757	UAAGACG	ENSMUST00000090379.2|Usp53|ENSMUSG00000039701.7|ubiquitin specific peptidase 53
mm10_v2_chr3_+_136670076_136670186	0.0692746	UAAGACG	ENSMUST00000070198.7|Ppp3ca|ENSMUSG00000028161.11|protein phosphatase 3, catalytic subunit, alpha isoform
mm10_v2_chr19_-_14597983_14598016	0.0663206	UAAGACG	ENSMUST00000052011.7|Tle4|ENSMUSG00000024642.10|transducin-like enhancer of split 4, homolog of Drosophila E(spl)
mm10_v2_chr18_-_12862624_12862714	0.0637069	UAAGACG	ENSMUST00000121808.1|Osbpl1a|ENSMUSG00000044252.11|oxysterol binding protein-like 1A 	ENSMUST00000118313.1|Osbpl1a|ENSMUSG00000044252.11|oxysterol binding protein-like 1A
mm10_v2_chr3_+_89520152_89520175	0.0632267	UAAGACG	ENSMUST00000000811.7|Kcnn3|ENSMUSG00000000794.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
mm10_v2_chr10_-_118868903_118868903	0.0627616	UAAGACG	ENSMUST00000004281.8|Dyrk2|ENSMUSG00000028630.8|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
mm10_v2_chr16_-_15594507_15594531	0.0616216	UAAGACG	ENSMUST00000115776.1|Ube2v2|ENSMUSG00000022674.8|ubiquitin-conjugating enzyme E2 variant 2 	ENSMUST00000115777.3|Ube2v2|ENSMUSG00000022674.8|ubiquitin-conjugating enzyme E2 variant 2
mm10_v2_chr17_+_6601671_6601671	0.0602921	UAAGACG	ENSMUST00000092966.4|Dynlt1c|ENSMUSG00000000579.8|dynein light chain Tctex-type 1C
mm10_v2_chr1_+_172698046_172698063	0.0557031	UAAGACG	ENSMUST00000038495.3|Crp|ENSMUSG00000037942.4|C-reactive protein, pentraxin-related
mm10_v2_chr10_+_39369750_39369804	0.0524588	UAAGACG	ENSMUST00000063091.6|Fyn|ENSMUSG00000019843.8|Fyn proto-oncogene 	ENSMUST00000099967.3|Fyn|ENSMUSG00000019843.8|Fyn proto-oncogene 	ENSMUST00000126486.1|Fyn|ENSMUSG00000019843.8|Fyn proto-oncogene
mm10_v2_chr14_-_52104015_52104028	0.0493807	UAAGACG	ENSMUST00000111610.4|Hnrnpc|ENSMUSG00000060373.8|heterogeneous nuclear ribonucleoprotein C 	ENSMUST00000164655.1|Hnrnpc|ENSMUSG00000060373.8|heterogeneous nuclear ribonucleoprotein C
mm10_v2_chr17_-_6317474_6317517	0.0481936	UAAGACG	ENSMUST00000169415.1|Dynlt1a|ENSMUSG00000092074.1|dynein light chain Tctex-type 1A
mm10_v2_chr2_+_160645881_160645896	0.0469719	UAAGACG	ENSMUST00000109468.2|Top1|ENSMUSG00000070544.6|topoisomerase (DNA) I
mm10_v2_chr19_-_32712287_32712336	0.0463449	UAAGACG	ENSMUST00000070210.4|Atad1|ENSMUSG00000013662.5|ATPase family, AAA domain containing 1
mm10_v2_chr7_-_116038734_116038750	0.0460258	UAAGACG	ENSMUST00000166877.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr14_-_121797670_121797753	0.0459466	UAAGACG	ENSMUST00000100299.3|Dock9|ENSMUSG00000025558.9|dedicator of cytokinesis 9
mm10_v2_chr7_+_49246812_49246844	0.0423513	UAAGACG	ENSMUST00000184945.1|Nav2|ENSMUSG00000052512.9|neuron navigator 2
mm10_v2_chr18_+_34220978_34221020	0.0400042	UAAGACG	ENSMUST00000079362.5|Apc|ENSMUSG00000005871.8|adenomatosis polyposis coli 	ENSMUST00000115781.3|Apc|ENSMUSG00000005871.8|adenomatosis polyposis coli
mm10_v2_chr18_+_53176345_53176376	0.0397652	UAAGACG	ENSMUST00000037850.5|Snx2|ENSMUSG00000034484.7|sorting nexin 2
mm10_v2_chr4_-_41314877_41314889	0.0391496	UAAGACG	ENSMUST00000030145.8|Dcaf12|ENSMUSG00000028436.8|DDB1 and CUL4 associated factor 12
mm10_v2_chr6_-_51469869_51469894	0.038938	UAAGACG	ENSMUST00000114459.1|Hnrnpa2b1|ENSMUSG00000004980.10|heterogeneous nuclear ribonucleoprotein A2/B1 	ENSMUST00000069949.6|Hnrnpa2b1|ENSMUSG00000004980.10|heterogeneous nuclear ribonucleoprotein A2/B1
mm10_v2_chr11_+_44617310_44617336	0.0379339	UAAGACG	ENSMUST00000081265.5|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000101326.3|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000109268.1|Ebf1|ENSMUSG00000057098.8|early B cell factor 1
mm10_v2_chr10_+_95940663_95940703	0.0371333	UAAGACG	ENSMUST00000053484.6|Eea1|ENSMUSG00000036499.8|early endosome antigen 1
mm10_v2_chr15_+_58415456_58415512	0.0344972	UAAGACG	ENSMUST00000037270.3|D15Ertd621e|ENSMUSG00000037119.3|DNA segment, Chr 15, ERATO Doi 621, expressed
mm10_v2_chr13_-_111490111_111490139	0.0308958	UAAGACG	ENSMUST00000047627.7|Gpbp1|ENSMUSG00000032745.11|GC-rich promoter binding protein 1
mm10_v2_chr10_-_58675631_58675654	0.0303137	UAAGACG	ENSMUST00000003312.4|Edar|ENSMUSG00000003227.4|ectodysplasin-A receptor
mm10_v2_chr2_-_6884975_6884996	0.029525	UAAGACG	ENSMUST00000114924.3|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000170438.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000114934.4|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr3_-_119783262_119783388	0.0282326	UAAGACG	ENSMUST00000029780.7|Ptbp2|ENSMUSG00000028134.7|polypyrimidine tract binding protein 2
mm10_v2_chr11_-_97575210_97575236	0.0281818	UAAGACG	ENSMUST00000107596.2|Srcin1|ENSMUSG00000038453.9|SRC kinase signaling inhibitor 1
mm10_v2_chr6_-_39206782_39206831	0.0278638	UAAGACG	ENSMUST00000002305.8|Jhdm1d|ENSMUSG00000042599.8|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
mm10_v2_chr15_+_96287518_96287604	0.0275911	UAAGACG	ENSMUST00000134985.2|Arid2|ENSMUSG00000033237.12|AT rich interactive domain 2 (ARID, RFX-like) 	ENSMUST00000096250.4|Arid2|ENSMUSG00000033237.12|AT rich interactive domain 2 (ARID, RFX-like)
mm10_v2_chr1_+_99772765_99772765	0.0265662	UAAGACG	ENSMUST00000086738.3|Cntnap5b|ENSMUSG00000067028.5|contactin associated protein-like 5B
mm10_v2_chr15_-_93275151_93275178	0.0242456	UAAGACG	ENSMUST00000057896.4|Gxylt1|ENSMUSG00000036197.9|glucoside xylosyltransferase 1 	ENSMUST00000049484.6|Gxylt1|ENSMUSG00000036197.9|glucoside xylosyltransferase 1
mm10_v2_chr13_-_56135629_56135655	0.0238501	UAAGACG	ENSMUST00000016081.6|H2afy|ENSMUSG00000015937.8|H2A histone family, member Y 	ENSMUST00000045788.7|H2afy|ENSMUSG00000015937.8|H2A histone family, member Y
mm10_v2_chr2_-_37647199_37647285	0.0229897	UAAGACG	ENSMUST00000028279.3|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr14_-_61439831_61439947	0.0226573	UAAGACG	ENSMUST00000022496.7|Kpna3|ENSMUSG00000021929.8|karyopherin (importin) alpha 3
mm10_v2_chr6_-_134566913_134566995	0.02233	UAAGACG	ENSMUST00000032322.8|Lrp6|ENSMUSG00000030201.9|low density lipoprotein receptor-related protein 6
mm10_v2_chr3_+_41555723_41555745	0.0206727	UAAGACG	ENSMUST00000026865.8|Phf17|ENSMUSG00000025764.8|PHD finger protein 17
mm10_v2_chr14_-_105176860_105176918	0.0199059	UAAGACG	ENSMUST00000163545.1|Rbm26|ENSMUSG00000022119.9|RNA binding motif protein 26
mm10_v2_chr4_+_106316187_106316243	0.0192179	UAAGACG	ENSMUST00000165709.1|Usp24|ENSMUSG00000028514.9|ubiquitin specific peptidase 24 	ENSMUST00000106798.1|Usp24|ENSMUSG00000028514.9|ubiquitin specific peptidase 24 	ENSMUST00000094933.4|Usp24|ENSMUSG00000028514.9|ubiquitin specific peptidase 24
mm10_v2_chr12_+_49382791_49382883	0.0190323	UAAGACG	ENSMUST00000179669.1|Foxg1|ENSMUSG00000020950.9|forkhead box G1
mm10_v2_chr1_-_64121456_64121491	0.01838	UAAGACG	ENSMUST00000142009.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous) 	ENSMUST00000114086.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous)
mm10_v2_chr1_-_105356658_105356714	0.0174498	UAAGACG	ENSMUST00000058688.5|Rnf152|ENSMUSG00000047496.5|ring finger protein 152 	ENSMUST00000172299.1|Rnf152|ENSMUSG00000047496.5|ring finger protein 152
mm10_v2_chr11_-_19018956_19018973	0.0166202	UAAGACG	ENSMUST00000068264.7|Meis1|ENSMUSG00000020160.12|Meis homeobox 1 	ENSMUST00000144988.1|Meis1|ENSMUSG00000020160.12|Meis homeobox 1 	ENSMUST00000185131.1|Meis1|ENSMUSG00000020160.12|Meis homeobox 1
mm10_v2_chr1_-_9748376_9748451	0.0160441	UAAGACG	ENSMUST00000057438.6|Vcpip1|ENSMUSG00000045210.8|valosin containing protein (p97)/p47 complex interacting protein 1
mm10_v2_chrX_-_88115632_88115675	0.0153984	UAAGACG	ENSMUST00000113966.1|Il1rapl1|ENSMUSG00000052372.4|interleukin 1 receptor accessory protein-like 1 	ENSMUST00000113964.1|Il1rapl1|ENSMUSG00000052372.4|interleukin 1 receptor accessory protein-like 1
mm10_v2_chr3_+_94837533_94837567	0.0150813	UAAGACG	ENSMUST00000107270.2|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain
mm10_v2_chr1_+_74506044_74506105	0.0131304	UAAGACG	ENSMUST00000087215.5|Rqcd1|ENSMUSG00000026174.8|rcd1 (required for cell differentiation) homolog 1 (S. pombe)
mm10_v2_chr10_-_23349887_23349919	0.0128679	UAAGACG	ENSMUST00000074366.6|Eya4|ENSMUSG00000010461.8|eyes absent 4 homolog (Drosophila) 	ENSMUST00000092665.4|Eya4|ENSMUSG00000010461.8|eyes absent 4 homolog (Drosophila)
mm10_v2_chr7_-_111082997_111083037	0.0124451	UAAGACG	ENSMUST00000161051.1|Eif4g2|ENSMUSG00000005610.10|eukaryotic translation initiation factor 4, gamma 2 	ENSMUST00000160132.1|Eif4g2|ENSMUSG00000005610.10|eukaryotic translation initiation factor 4, gamma 2 	ENSMUST00000106666.3|Eif4g2|ENSMUSG00000005610.10|eukaryotic translation initiation factor 4, gamma 2 	ENSMUST00000162415.1|Eif4g2|ENSMUSG00000005610.10|eukaryotic translation initiation factor 4, gamma 2
mm10_v2_chr4_-_126429501_126429556	0.0115772	UAAGACG	ENSMUST00000069097.6|Ago3|ENSMUSG00000028842.9|argonaute RISC catalytic subunit 3
mm10_v2_chr5_+_123343834_123343970	0.00920359	UAAGACG	ENSMUST00000120593.1|Bcl7a|ENSMUSG00000029438.3|B cell CLL/lymphoma 7A
mm10_v2_chr4_+_138216296_138216324	0.0086217	UAAGACG	ENSMUST00000105827.1|Hp1bp3|ENSMUSG00000028759.7|heterochromatin protein 1, binding protein 3
mm10_v2_chr14_+_11553523_11553542	0.00329904	UAAGACG	ENSMUST00000022264.6|Ptprg|ENSMUSG00000021745.7|protein tyrosine phosphatase, receptor type, G
mm10_v2_chr16_-_5049882_5049910	0.00270665	UAAGACG	ENSMUST00000023189.7|Glyr1|ENSMUSG00000022536.7|glyoxylate reductase 1 homolog (Arabidopsis) 	ENSMUST00000115844.1|Glyr1|ENSMUSG00000022536.7|glyoxylate reductase 1 homolog (Arabidopsis)
mm10_v2_chr1_+_82586942_82586988	0.00136615	UAAGACG	ENSMUST00000113457.2|Col4a3|ENSMUSG00000079465.2|collagen, type IV, alpha 3
mm10_v2_chr4_+_123904832_123904851	0.00131714	UAAGACG	ENSMUST00000030400.7|Mycbp|ENSMUSG00000028647.7|c-myc binding protein
mm10_v2_chr3_+_157947414_157947510	0.000623367	UAAGACG	ENSMUST00000164582.1|Ankrd13c|ENSMUSG00000039988.8|ankyrin repeat domain 13c 	ENSMUST00000040787.8|Ankrd13c|ENSMUSG00000039988.8|ankyrin repeat domain 13c
mm10_v2_chr16_+_44173239_44173270	2.26821e-05	UAAGACG	ENSMUST00000119746.1|Gm608|ENSMUSG00000068284.8|predicted gene 608
