mm10_v2_chr5_-_135251209_135251242	0.436797	UCCAGUU	ENSMUST00000062572.2|Fzd9|ENSMUSG00000049551.2|frizzled homolog 9 (Drosophila)
mm10_v2_chr5_+_98854434_98854466	0.349422	UCCAGUU	ENSMUST00000031278.4|Bmp3|ENSMUSG00000029335.4|bone morphogenetic protein 3
mm10_v2_chr9_-_97018823_97018843	0.316459	UCCAGUU	ENSMUST00000055433.4|Spsb4|ENSMUSG00000046997.5|splA/ryanodine receptor domain and SOCS box containing 4
mm10_v2_chr2_+_107290590_107290660	0.30753	UCCAGUU	ENSMUST00000037012.2|Kcna4|ENSMUSG00000042604.5|potassium voltage-gated channel, shaker-related subfamily, member 4
mm10_v2_chr2_+_30061754_30061859	0.29952	UCCAGUU	ENSMUST00000149578.1|Set|ENSMUSG00000054766.7|SET nuclear oncogene 	ENSMUST00000102866.3|Set|ENSMUSG00000054766.7|SET nuclear oncogene
mm10_v2_chr9_+_95559817_95559960	0.261921	UCCAGUU	ENSMUST00000079597.5|Paqr9|ENSMUSG00000064225.5|progestin and adipoQ receptor family member IX
mm10_v2_chr4_+_107434617_107434719	0.251306	UCCAGUU	ENSMUST00000135835.1|Glis1|ENSMUSG00000034762.3|GLIS family zinc finger 1 	ENSMUST00000046005.2|Glis1|ENSMUSG00000034762.3|GLIS family zinc finger 1
mm10_v2_chr14_+_8080315_8080385	0.243273	UCCAGUU	ENSMUST00000023924.3|Rpp14|ENSMUSG00000023156.3|ribonuclease P 14 subunit
mm10_v2_chr16_+_14361552_14361601	0.240316	UCCAGUU	ENSMUST00000100167.3|Abcc1|ENSMUSG00000023088.10|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENSMUST00000154748.1|Abcc1|ENSMUSG00000023088.10|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENSMUST00000134776.1|Abcc1|ENSMUSG00000023088.10|ATP-binding cassette, sub-family C (CFTR/MRP), member 1
mm10_v2_chr14_-_46822232_46822266	0.230841	UCCAGUU	ENSMUST00000111817.1|Gmfb|ENSMUSG00000062014.6|glia maturation factor, beta 	ENSMUST00000079314.5|Gmfb|ENSMUSG00000062014.6|glia maturation factor, beta
mm10_v2_chr3_+_116594959_116595031	0.217402	UCCAGUU	ENSMUST00000029571.8|Sass6|ENSMUSG00000027959.9|spindle assembly 6 homolog (C. elegans)
mm10_v2_chr14_+_69029289_69029414	0.204413	UCCAGUU	ENSMUST00000014957.8|Stc1|ENSMUSG00000014813.8|stanniocalcin 1
mm10_v2_chr14_-_31830402_31830440	0.200377	UCCAGUU	ENSMUST00000014640.7|Ankrd28|ENSMUSG00000014496.7|ankyrin repeat domain 28
mm10_v2_chr4_+_21931291_21931366	0.199611	UCCAGUU	ENSMUST00000029908.7|Faxc|ENSMUSG00000028246.7|failed axon connections homolog (Drosophila)
mm10_v2_chr9_+_59291565_59291577	0.181031	UCCAGUU	ENSMUST00000026266.7|Adpgk|ENSMUSG00000025236.10|ADP-dependent glucokinase
mm10_v2_chr3_+_51415986_51416044	0.179367	UCCAGUU	ENSMUST00000029303.7|Naa15|ENSMUSG00000063273.6|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm10_v2_chr2_-_102186322_102186394	0.179292	UCCAGUU	ENSMUST00000111222.1|Ldlrad3|ENSMUSG00000048058.11|low density lipoprotein receptor class A domain containing 3 	ENSMUST00000058790.5|Ldlrad3|ENSMUSG00000048058.11|low density lipoprotein receptor class A domain containing 3
mm10_v2_chr11_+_115381906_115381933	0.177735	UCCAGUU	ENSMUST00000053288.5|Cdr2l|ENSMUSG00000050910.5|cerebellar degeneration-related protein 2-like
mm10_v2_chr11_-_72411695_72411718	0.171418	UCCAGUU	ENSMUST00000108500.1|Smtnl2|ENSMUSG00000045667.8|smoothelin-like 2 	ENSMUST00000050226.6|Smtnl2|ENSMUSG00000045667.8|smoothelin-like 2
mm10_v2_chr5_-_96161990_96162097	0.17124	UCCAGUU	ENSMUST00000155901.1|Cnot6l|ENSMUSG00000034724.11|CCR4-NOT transcription complex, subunit 6-like
mm10_v2_chr3_-_89322883_89322965	0.171078	UCCAGUU	ENSMUST00000029673.5|Efna3|ENSMUSG00000028039.7|ephrin A3
mm10_v2_chr5_+_121397936_121398004	0.169708	UCCAGUU	ENSMUST00000042163.8|Naa25|ENSMUSG00000042719.11|N(alpha)-acetyltransferase 25, NatB auxiliary subunit
mm10_v2_chr7_+_89404356_89404367	0.166214	UCCAGUU	ENSMUST00000058755.3|Fzd4|ENSMUSG00000049791.3|frizzled homolog 4 (Drosophila)
mm10_v2_chr6_-_121003099_121003153	0.162979	UCCAGUU	ENSMUST00000098457.2|Mical3|ENSMUSG00000051586.8|microtubule associated monooxygenase, calponin and LIM domain containing 3 	ENSMUST00000150503.1|Mical3|ENSMUSG00000051586.8|microtubule associated monooxygenase, calponin and LIM domain containing 3
mm10_v2_chr5_-_86172747_86172803	0.162737	UCCAGUU	ENSMUST00000039373.7|Uba6|ENSMUSG00000035898.7|ubiquitin-like modifier activating enzyme 6
mm10_v2_chr2_-_132029845_132030001	0.16182	UCCAGUU	ENSMUST00000028814.8|Rassf2|ENSMUSG00000027339.9|Ras association (RalGDS/AF-6) domain family member 2
mm10_v2_chr15_+_102073773_102073903	0.157632	UCCAGUU	ENSMUST00000169681.1|Eif4b|ENSMUSG00000058655.8|eukaryotic translation initiation factor 4B
mm10_v2_chr2_-_104816696_104816792	0.143519	UCCAGUU	ENSMUST00000117237.1|Qser1|ENSMUSG00000074994.4|glutamine and serine rich 1
mm10_v2_chr5_+_105415738_105415849	0.14089	UCCAGUU	ENSMUST00000112707.1|Lrrc8b|ENSMUSG00000070639.4|leucine rich repeat containing 8 family, member B
mm10_v2_chr16_-_5132458_5132483	0.139169	UCCAGUU	ENSMUST00000035672.3|Ppl|ENSMUSG00000039457.3|periplakin
mm10_v2_chr13_-_3918157_3918220	0.135666	UCCAGUU	ENSMUST00000091853.4|Net1|ENSMUSG00000021215.8|neuroepithelial cell transforming gene 1
mm10_v2_chr10_-_61452658_61452813	0.132489	UCCAGUU	ENSMUST00000167087.1|Eif4ebp2|ENSMUSG00000020091.8|eukaryotic translation initiation factor 4E binding protein 2 	ENSMUST00000020288.7|Eif4ebp2|ENSMUSG00000020091.8|eukaryotic translation initiation factor 4E binding protein 2
mm10_v2_chr1_-_119422239_119422291	0.131424	UCCAGUU	ENSMUST00000038765.5|Inhbb|ENSMUSG00000037035.5|inhibin beta-B
mm10_v2_chr14_-_98169542_98169595	0.131108	UCCAGUU	ENSMUST00000069334.7|Dach1|ENSMUSG00000055639.10|dachshund 1 (Drosophila) 	ENSMUST00000071533.6|Dach1|ENSMUSG00000055639.10|dachshund 1 (Drosophila)
mm10_v2_chrX_-_105929397_105929408	0.127213	UCCAGUU	ENSMUST00000113573.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human) 	ENSMUST00000130980.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm10_v2_chr19_+_53140430_53140449	0.126036	UCCAGUU	ENSMUST00000111741.2|Add3|ENSMUSG00000025026.8|adducin 3 (gamma)
mm10_v2_chr9_-_32541589_32541602	0.125207	UCCAGUU	ENSMUST00000016231.7|Fli1|ENSMUSG00000016087.7|Friend leukemia integration 1
mm10_v2_chr13_+_54071815_54071859	0.124107	UCCAGUU	ENSMUST00000021930.8|Sfxn1|ENSMUSG00000021474.8|sideroflexin 1
mm10_v2_chr1_+_172499948_172500047	0.120228	UCCAGUU	ENSMUST00000111230.1|Tagln2|ENSMUSG00000026547.9|transgelin 2
mm10_v2_chr2_+_5845017_5845062	0.119874	UCCAGUU	ENSMUST00000026927.3|Nudt5|ENSMUSG00000025817.6|nudix (nucleoside diphosphate linked moiety X)-type motif 5 	ENSMUST00000179748.1|Nudt5|ENSMUSG00000025817.6|nudix (nucleoside diphosphate linked moiety X)-type motif 5
mm10_v2_chr19_-_10240689_10240751	0.118682	UCCAGUU	ENSMUST00000088013.5|Myrf|ENSMUSG00000036098.9|myelin regulatory factor
mm10_v2_chr3_-_50443603_50443615	0.116918	UCCAGUU	ENSMUST00000029297.4|Slc7a11|ENSMUSG00000027737.5|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
mm10_v2_chr1_-_58504946_58505109	0.116291	UCCAGUU	ENSMUST00000027198.5|Orc2|ENSMUSG00000026037.8|origin recognition complex, subunit 2
mm10_v2_chr12_-_64965496_64965538	0.115934	UCCAGUU	ENSMUST00000021331.7|Klhl28|ENSMUSG00000020948.8|kelch-like 28
mm10_v2_chr1_+_59482133_59482179	0.114218	UCCAGUU	ENSMUST00000114246.2|Fzd7|ENSMUSG00000041075.7|frizzled homolog 7 (Drosophila) 	ENSMUST00000037105.6|Fzd7|ENSMUSG00000041075.7|frizzled homolog 7 (Drosophila)
mm10_v2_chrX_-_103821940_103821992	0.113484	UCCAGUU	ENSMUST00000042664.5|Slc16a2|ENSMUSG00000033965.6|solute carrier family 16 (monocarboxylic acid transporters), member 2
mm10_v2_chrX_-_48208566_48208691	0.113094	UCCAGUU	ENSMUST00000037960.4|Zdhhc9|ENSMUSG00000036985.6|zinc finger, DHHC domain containing 9
mm10_v2_chr10_+_128377086_128377155	0.110029	UCCAGUU	ENSMUST00000014642.3|Ankrd52|ENSMUSG00000014498.3|ankyrin repeat domain 52
mm10_v2_chrX_-_8145713_8145880	0.105841	UCCAGUU	ENSMUST00000115615.2|Rbm3|ENSMUSG00000031167.10|RNA binding motif protein 3 	ENSMUST00000115616.1|Rbm3|ENSMUSG00000031167.10|RNA binding motif protein 3 	ENSMUST00000115621.2|Rbm3|ENSMUSG00000031167.10|RNA binding motif protein 3
mm10_v2_chr2_-_5714490_5714538	0.104681	UCCAGUU	ENSMUST00000044009.7|Camk1d|ENSMUSG00000039145.10|calcium/calmodulin-dependent protein kinase ID
mm10_v2_chr15_+_99126513_99126616	0.104074	UCCAGUU	ENSMUST00000063517.4|Spats2|ENSMUSG00000051934.4|spermatogenesis associated, serine-rich 2
mm10_v2_chr7_-_78578308_78578408	0.103301	UCCAGUU	ENSMUST00000039431.7|Ntrk3|ENSMUSG00000059146.6|neurotrophic tyrosine kinase, receptor, type 3
mm10_v2_chr9_+_14276301_14276347	0.10147	UCCAGUU	ENSMUST00000034507.7|Sesn3|ENSMUSG00000032009.7|sestrin 3
mm10_v2_chr2_-_65567465_65567495	0.100824	UCCAGUU	ENSMUST00000066432.5|Scn3a|ENSMUSG00000057182.8|sodium channel, voltage-gated, type III, alpha
mm10_v2_chr10_+_13090788_13090843	0.10053	UCCAGUU	ENSMUST00000121646.1|Plagl1|ENSMUSG00000019817.12|pleiomorphic adenoma gene-like 1 	ENSMUST00000121325.1|Plagl1|ENSMUSG00000019817.12|pleiomorphic adenoma gene-like 1 	ENSMUST00000121766.1|Plagl1|ENSMUSG00000019817.12|pleiomorphic adenoma gene-like 1
mm10_v2_chr15_+_9140527_9140621	0.0989789	UCCAGUU	ENSMUST00000090380.4|Lmbrd2|ENSMUSG00000039704.6|LMBR1 domain containing 2
mm10_v2_chr9_+_75071148_75071228	0.0987202	UCCAGUU	ENSMUST00000123128.1|Myo5a|ENSMUSG00000034593.10|myosin VA
mm10_v2_chr19_-_44069736_44069787	0.096394	UCCAGUU	ENSMUST00000172041.1|Erlin1|ENSMUSG00000025198.10|ER lipid raft associated 1 	ENSMUST00000071698.6|Erlin1|ENSMUSG00000025198.10|ER lipid raft associated 1 	ENSMUST00000112028.3|Erlin1|ENSMUSG00000025198.10|ER lipid raft associated 1
mm10_v2_chr4_+_59189240_59189257	0.0926392	UCCAGUU	ENSMUST00000030074.7|Ugcg|ENSMUSG00000028381.8|UDP-glucose ceramide glucosyltransferase
mm10_v2_chr18_+_69345721_69345811	0.0915372	UCCAGUU	ENSMUST00000078486.6|Tcf4|ENSMUSG00000053477.9|transcription factor 4 	ENSMUST00000114982.1|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr11_+_77686155_77686179	0.0906324	UCCAGUU	ENSMUST00000100802.4|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2 	ENSMUST00000181023.1|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2
mm10_v2_chr5_-_140389188_140389254	0.0901282	UCCAGUU	ENSMUST00000031539.7|Snx8|ENSMUSG00000029560.8|sorting nexin 8
mm10_v2_chr19_+_55253369_55253369	0.0883618	UCCAGUU	ENSMUST00000043150.4|Acsl5|ENSMUSG00000024981.5|acyl-CoA synthetase long-chain family member 5
mm10_v2_chr2_-_20968881_20968957	0.0878152	UCCAGUU	ENSMUST00000114594.1|Arhgap21|ENSMUSG00000036591.9|Rho GTPase activating protein 21
mm10_v2_chr5_-_74068361_74068438	0.086146	UCCAGUU	ENSMUST00000119154.1|Usp46|ENSMUSG00000054814.8|ubiquitin specific peptidase 46 	ENSMUST00000068058.7|Usp46|ENSMUSG00000054814.8|ubiquitin specific peptidase 46
mm10_v2_chr2_-_151009364_151009398	0.0858244	UCCAGUU	ENSMUST00000109896.1|Ninl|ENSMUSG00000068115.7|ninein-like
mm10_v2_chr17_-_45686214_45686265	0.0854348	UCCAGUU	ENSMUST00000113523.2|Tmem63b|ENSMUSG00000036026.9|transmembrane protein 63b
mm10_v2_chr5_-_24030649_24030707	0.0850091	UCCAGUU	ENSMUST00000030849.6|Fam126a|ENSMUSG00000028995.8|family with sequence similarity 126, member A
mm10_v2_chr2_+_104590453_104590533	0.0837124	UCCAGUU	ENSMUST00000028599.7|Cstf3|ENSMUSG00000027176.8|cleavage stimulation factor, 3' pre-RNA, subunit 3
mm10_v2_chr1_-_17097839_17097889	0.0836333	UCCAGUU	ENSMUST00000038382.4|Jph1|ENSMUSG00000042686.4|junctophilin 1
mm10_v2_chr11_+_77216180_77216287	0.0825999	UCCAGUU	ENSMUST00000037912.5|Ssh2|ENSMUSG00000037926.9|slingshot homolog 2 (Drosophila) 	ENSMUST00000156488.1|Ssh2|ENSMUSG00000037926.9|slingshot homolog 2 (Drosophila)
mm10_v2_chr3_+_136670076_136670186	0.0817585	UCCAGUU	ENSMUST00000070198.7|Ppp3ca|ENSMUSG00000028161.11|protein phosphatase 3, catalytic subunit, alpha isoform
mm10_v2_chr4_-_132212255_132212303	0.0808473	UCCAGUU	ENSMUST00000152796.1|Ythdf2|ENSMUSG00000040025.11|YTH domain family 2
mm10_v2_chr14_-_121797670_121797753	0.0802118	UCCAGUU	ENSMUST00000100299.3|Dock9|ENSMUSG00000025558.9|dedicator of cytokinesis 9
mm10_v2_chr6_-_11907419_11907484	0.0793592	UCCAGUU	ENSMUST00000031637.5|Ndufa4|ENSMUSG00000029632.5|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4
mm10_v2_chr10_+_71347736_71347763	0.0792928	UCCAGUU	ENSMUST00000079252.6|Ipmk|ENSMUSG00000060733.7|inositol polyphosphate multikinase
mm10_v2_chr18_-_47368830_47368878	0.078851	UCCAGUU	ENSMUST00000019791.7|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 	ENSMUST00000115449.2|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm10_v2_chr8_-_94037007_94037027	0.0781006	UCCAGUU	ENSMUST00000034204.9|Nudt21|ENSMUSG00000031754.9|nudix (nucleoside diphosphate linked moiety X)-type motif 21
mm10_v2_chr15_+_6386598_6386785	0.0777033	UCCAGUU	ENSMUST00000080880.5|Dab2|ENSMUSG00000022150.10|disabled 2, mitogen-responsive phosphoprotein 	ENSMUST00000110664.2|Dab2|ENSMUSG00000022150.10|disabled 2, mitogen-responsive phosphoprotein 	ENSMUST00000110663.2|Dab2|ENSMUSG00000022150.10|disabled 2, mitogen-responsive phosphoprotein 	ENSMUST00000161812.1|Dab2|ENSMUSG00000022150.10|disabled 2, mitogen-responsive phosphoprotein 	ENSMUST00000160134.1|Dab2|ENSMUSG00000022150.10|disabled 2, mitogen-responsive phosphoprotein
mm10_v2_chr6_-_99666762_99666786	0.0775999	UCCAGUU	ENSMUST00000032151.2|Eif4e3|ENSMUSG00000093661.1|eukaryotic translation initiation factor 4E member 3
mm10_v2_chr2_-_166155624_166155671	0.0766966	UCCAGUU	ENSMUST00000109249.2|Sulf2|ENSMUSG00000006800.7|sulfatase 2
mm10_v2_chr1_+_63273261_63273275	0.0764663	UCCAGUU	ENSMUST00000114132.1|Zdbf2|ENSMUSG00000027520.9|zinc finger, DBF-type containing 2 	ENSMUST00000126932.1|Zdbf2|ENSMUSG00000027520.9|zinc finger, DBF-type containing 2
mm10_v2_chr5_-_52190484_52190524	0.0763395	UCCAGUU	ENSMUST00000031061.7|Dhx15|ENSMUSG00000029169.7|DEAH (Asp-Glu-Ala-His) box polypeptide 15
mm10_v2_chr11_-_120598346_120598405	0.0746146	UCCAGUU	ENSMUST00000026125.2|Alyref|ENSMUSG00000025134.2|Aly/REF export factor
mm10_v2_chr9_-_45984816_45984871	0.0744555	UCCAGUU	ENSMUST00000172450.1|Pafah1b2|ENSMUSG00000003131.6|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2
mm10_v2_chr8_+_109778554_109778558	0.0744049	UCCAGUU	ENSMUST00000093157.6|Ap1g1|ENSMUSG00000031731.10|adaptor protein complex AP-1, gamma 1 subunit
mm10_v2_chr1_+_44119952_44119985	0.0738079	UCCAGUU	ENSMUST00000114709.2|Bivm|ENSMUSG00000041684.5|basic, immunoglobulin-like variable motif containing
mm10_v2_chr8_-_47990535_47990577	0.0721828	UCCAGUU	ENSMUST00000057561.7|Wwc2|ENSMUSG00000031563.7|WW, C2 and coiled-coil domain containing 2
mm10_v2_chr3_+_89520152_89520175	0.0720902	UCCAGUU	ENSMUST00000000811.7|Kcnn3|ENSMUSG00000000794.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
mm10_v2_chrX_+_9199865_9199907	0.0717708	UCCAGUU	ENSMUST00000069763.2|Lancl3|ENSMUSG00000047344.9|LanC lantibiotic synthetase component C-like 3 (bacterial)
mm10_v2_chr7_+_141228766_141228813	0.0716378	UCCAGUU	ENSMUST00000106027.2|Phrf1|ENSMUSG00000038611.10|PHD and ring finger domains 1
mm10_v2_chr10_-_22731336_22731447	0.0711702	UCCAGUU	ENSMUST00000127698.1|Tbpl1|ENSMUSG00000071359.7|TATA box binding protein-like 1
mm10_v2_chrX_+_134601179_134601266	0.0703311	UCCAGUU	ENSMUST00000074950.4|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2 	ENSMUST00000113203.1|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2 	ENSMUST00000113202.1|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2
mm10_v2_chr11_-_97187872_97187926	0.0700726	UCCAGUU	ENSMUST00000001479.4|Kpnb1|ENSMUSG00000001440.5|karyopherin (importin) beta 1
mm10_v2_chr2_-_103797617_103797662	0.0697108	UCCAGUU	ENSMUST00000028607.6|Caprin1|ENSMUSG00000027184.8|cell cycle associated protein 1
mm10_v2_chr5_-_125341043_125341112	0.0695661	UCCAGUU	ENSMUST00000111390.1|Scarb1|ENSMUSG00000037936.9|scavenger receptor class B, member 1 	ENSMUST00000086075.6|Scarb1|ENSMUSG00000037936.9|scavenger receptor class B, member 1
mm10_v2_chr5_+_30232581_30232680	0.0692435	UCCAGUU	ENSMUST00000145167.1|Ept1|ENSMUSG00000075703.9|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)
mm10_v2_chrX_-_57393020_57393040	0.0689741	UCCAGUU	ENSMUST00000143310.1|Rbmx|ENSMUSG00000031134.10|RNA binding motif protein, X chromosome 	ENSMUST00000098470.2|Rbmx|ENSMUSG00000031134.10|RNA binding motif protein, X chromosome 	ENSMUST00000114726.1|Rbmx|ENSMUSG00000031134.10|RNA binding motif protein, X chromosome
mm10_v2_chr18_-_10181792_10181792	0.0689476	UCCAGUU	ENSMUST00000067947.5|Rock1|ENSMUSG00000024290.8|Rho-associated coiled-coil containing protein kinase 1
mm10_v2_chr9_-_75559604_75559665	0.0688948	UCCAGUU	ENSMUST00000072232.7|Tmod3|ENSMUSG00000058587.7|tropomodulin 3
mm10_v2_chr19_-_7241216_7241226	0.0684719	UCCAGUU	ENSMUST00000025675.9|Naa40|ENSMUSG00000024764.9|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)
mm10_v2_chr3_+_34020075_34020082	0.067605	UCCAGUU	ENSMUST00000001620.8|Fxr1|ENSMUSG00000027680.9|fragile X mental retardation gene 1, autosomal homolog 	ENSMUST00000167354.1|Fxr1|ENSMUSG00000027680.9|fragile X mental retardation gene 1, autosomal homolog
mm10_v2_chrX_-_142390334_142390345	0.0675954	UCCAGUU	ENSMUST00000112907.1|Acsl4|ENSMUSG00000031278.6|acyl-CoA synthetase long-chain family member 4
mm10_v2_chr14_-_100149764_100149764	0.0671247	UCCAGUU	ENSMUST00000097079.4|Klf12|ENSMUSG00000072294.4|Kruppel-like factor 12
mm10_v2_chr2_+_156196642_156196775	0.0651646	UCCAGUU	ENSMUST00000037401.8|Phf20|ENSMUSG00000038116.10|PHD finger protein 20
mm10_v2_chr11_+_116434087_116434106	0.0647757	UCCAGUU	ENSMUST00000057676.6|Ubald2|ENSMUSG00000050628.6|UBA-like domain containing 2
mm10_v2_chr6_+_119479668_119479795	0.0646877	UCCAGUU	ENSMUST00000032094.5|Fbxl14|ENSMUSG00000030019.5|F-box and leucine-rich repeat protein 14
mm10_v2_chr11_-_70220969_70221027	0.0632586	UCCAGUU	ENSMUST00000060010.2|Slc16a13|ENSMUSG00000044367.6|solute carrier family 16 (monocarboxylic acid transporters), member 13
mm10_v2_chr11_-_75348261_75348324	0.0628313	UCCAGUU	ENSMUST00000000767.5|Rpa1|ENSMUSG00000000751.7|replication protein A1 	ENSMUST00000092907.5|Rpa1|ENSMUSG00000000751.7|replication protein A1
mm10_v2_chr3_-_51277470_51277514	0.062025	UCCAGUU	ENSMUST00000108053.2|Elf2|ENSMUSG00000037174.12|E74-like factor 2 	ENSMUST00000108051.1|Elf2|ENSMUSG00000037174.12|E74-like factor 2
mm10_v2_chr5_+_88886809_88886825	0.0616575	UCCAGUU	ENSMUST00000148750.1|Slc4a4|ENSMUSG00000060961.8|solute carrier family 4 (anion exchanger), member 4
mm10_v2_chr3_-_110142996_110143010	0.0606701	UCCAGUU	ENSMUST00000156177.2|Ntng1|ENSMUSG00000059857.9|netrin G1
mm10_v2_chr2_+_14074091_14074146	0.059569	UCCAGUU	ENSMUST00000102960.4|Stam|ENSMUSG00000026718.11|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1
mm10_v2_chr1_+_39900883_39900963	0.0591601	UCCAGUU	ENSMUST00000163854.2|Map4k4|ENSMUSG00000026074.8|mitogen-activated protein kinase kinase kinase kinase 4 	ENSMUST00000168431.1|Map4k4|ENSMUSG00000026074.8|mitogen-activated protein kinase kinase kinase kinase 4
mm10_v2_chr5_+_3343893_3343945	0.0591312	UCCAGUU	ENSMUST00000165117.1|Cdk6|ENSMUSG00000040274.5|cyclin-dependent kinase 6
mm10_v2_chr16_-_96127604_96127736	0.0587879	UCCAGUU	ENSMUST00000133885.1|Hmgn1|ENSMUSG00000040681.8|high mobility group nucleosomal binding domain 1 	ENSMUST00000050884.7|Hmgn1|ENSMUSG00000040681.8|high mobility group nucleosomal binding domain 1
mm10_v2_chr15_+_40655020_40655054	0.0574041	UCCAGUU	ENSMUST00000053467.4|Zfpm2|ENSMUSG00000022306.8|zinc finger protein, multitype 2
mm10_v2_chr1_+_160906372_160906460	0.0568441	UCCAGUU	ENSMUST00000161609.1|Rc3h1|ENSMUSG00000040423.4|RING CCCH (C3H) domains 1
mm10_v2_chr4_-_141790891_141790931	0.0565756	UCCAGUU	ENSMUST00000038014.4|Dnajc16|ENSMUSG00000040697.4|DnaJ (Hsp40) homolog, subfamily C, member 16 	ENSMUST00000153880.1|Dnajc16|ENSMUSG00000040697.4|DnaJ (Hsp40) homolog, subfamily C, member 16
mm10_v2_chr13_-_93192270_93192328	0.05596	UCCAGUU	ENSMUST00000048702.5|Papd4|ENSMUSG00000042167.5|PAP associated domain containing 4
mm10_v2_chr2_+_180582712_180582742	0.0533805	UCCAGUU	ENSMUST00000029085.8|Mrgbp|ENSMUSG00000027569.9|MRG/MORF4L binding protein
mm10_v2_chr6_+_8209216_8209263	0.0530919	UCCAGUU	ENSMUST00000040017.7|Mios|ENSMUSG00000042447.7|missing oocyte, meiosis regulator, homolog (Drosophila)
mm10_v2_chr2_+_122028544_122028563	0.052859	UCCAGUU	ENSMUST00000028668.7|Eif3j1|ENSMUSG00000027236.8|eukaryotic translation initiation factor 3, subunit J1
mm10_v2_chr6_-_149101674_149101686	0.0528584	UCCAGUU	ENSMUST00000111557.1|Dennd5b|ENSMUSG00000030313.9|DENN/MADD domain containing 5B
mm10_v2_chr3_-_133544390_133544412	0.0528392	UCCAGUU	ENSMUST00000098603.3|Tet2|ENSMUSG00000040943.8|tet methylcytosine dioxygenase 2
mm10_v2_chr2_+_112379204_112379253	0.0526831	UCCAGUU	ENSMUST00000028552.3|Katnbl1|ENSMUSG00000027132.3|katanin p80 subunit B like 1
mm10_v2_chr5_-_137072254_137072277	0.0522576	UCCAGUU	ENSMUST00000077523.3|Serpine1|ENSMUSG00000037411.4|serine (or cysteine) peptidase inhibitor, clade E, member 1 	ENSMUST00000041388.4|Serpine1|ENSMUSG00000037411.4|serine (or cysteine) peptidase inhibitor, clade E, member 1
mm10_v2_chr5_-_123684289_123684379	0.0508794	UCCAGUU	ENSMUST00000111564.1|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1 	ENSMUST00000063905.5|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1
mm10_v2_chr19_+_21653302_21653320	0.0499909	UCCAGUU	ENSMUST00000052556.3|Abhd17b|ENSMUSG00000047368.3|abhydrolase domain containing 17B
mm10_v2_chr15_-_91049823_91049948	0.0492266	UCCAGUU	ENSMUST00000088614.5|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A 	ENSMUST00000100304.4|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A 	ENSMUST00000067205.8|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A 	ENSMUST00000109288.2|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A 	ENSMUST00000109287.2|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A
mm10_v2_chr9_+_44334685_44334715	0.0491794	UCCAGUU	ENSMUST00000052686.2|H2afx|ENSMUSG00000049932.2|H2A histone family, member X
mm10_v2_chr7_+_67952817_67952859	0.0489923	UCCAGUU	ENSMUST00000005671.8|Igf1r|ENSMUSG00000005533.9|insulin-like growth factor I receptor
mm10_v2_chr11_+_52232009_52232041	0.0488911	UCCAGUU	ENSMUST00000037324.5|Skp1a|ENSMUSG00000036309.8|S-phase kinase-associated protein 1A 	ENSMUST00000166537.1|Skp1a|ENSMUSG00000036309.8|S-phase kinase-associated protein 1A
mm10_v2_chr2_-_74578875_74578954	0.0483817	UCCAGUU	ENSMUST00000134168.1|Lnp|ENSMUSG00000009207.9|limb and neural patterns 	ENSMUST00000111993.2|Lnp|ENSMUSG00000009207.9|limb and neural patterns 	ENSMUST00000064503.6|Lnp|ENSMUSG00000009207.9|limb and neural patterns
mm10_v2_chr1_+_151344472_151344530	0.0481827	UCCAGUU	ENSMUST00000023918.6|Ivns1abp|ENSMUSG00000023150.8|influenza virus NS1A binding protein 	ENSMUST00000097543.1|Ivns1abp|ENSMUSG00000023150.8|influenza virus NS1A binding protein 	ENSMUST00000111887.3|Ivns1abp|ENSMUSG00000023150.8|influenza virus NS1A binding protein
mm10_v2_chr8_-_80739497_80739497	0.0472665	UCCAGUU	ENSMUST00000043359.8|Smarca5|ENSMUSG00000031715.8|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
mm10_v2_chr14_-_63543931_63543991	0.0469682	UCCAGUU	ENSMUST00000058679.5|Mtmr9|ENSMUSG00000035078.5|myotubularin related protein 9
mm10_v2_chr8_-_115707778_115707794	0.0458908	UCCAGUU	ENSMUST00000109104.1|Maf|ENSMUSG00000055435.6|avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog
mm10_v2_chr5_-_135934590_135934613	0.0456103	UCCAGUU	ENSMUST00000055808.5|Ywhag|ENSMUSG00000051391.8|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm10_v2_chr17_+_78200240_78200258	0.0442728	UCCAGUU	ENSMUST00000112498.2|Crim1|ENSMUSG00000024074.7|cysteine rich transmembrane BMP regulator 1 (chordin like)
mm10_v2_chr10_-_44458715_44458751	0.0438732	UCCAGUU	ENSMUST00000039174.4|Prdm1|ENSMUSG00000038151.6|PR domain containing 1, with ZNF domain
mm10_v2_chr19_-_44146433_44146447	0.0424657	UCCAGUU	ENSMUST00000079033.4|Bloc1s2|ENSMUSG00000057506.4|biogenesis of lysosome-related organelles complex-1, subunit 2
mm10_v2_chr1_+_131910458_131910539	0.0417601	UCCAGUU	ENSMUST00000062264.6|Nucks1|ENSMUSG00000026434.6|nuclear casein kinase and cyclin-dependent kinase substrate 1
mm10_v2_chr9_-_97111117_97111159	0.0415329	UCCAGUU	ENSMUST00000085206.4|Slc25a36|ENSMUSG00000032449.7|solute carrier family 25, member 36
mm10_v2_chr2_-_155514796_155514860	0.04133	UCCAGUU	ENSMUST00000029131.4|Ggt7|ENSMUSG00000027603.9|gamma-glutamyltransferase 7
mm10_v2_chr11_+_93886157_93886219	0.0411217	UCCAGUU	ENSMUST00000063718.4|Mbtd1|ENSMUSG00000059474.7|mbt domain containing 1 	ENSMUST00000107854.2|Mbtd1|ENSMUSG00000059474.7|mbt domain containing 1
mm10_v2_chr7_-_121707253_121707460	0.0409317	UCCAGUU	ENSMUST00000046929.6|Usp31|ENSMUSG00000063317.6|ubiquitin specific peptidase 31
mm10_v2_chr1_-_136346074_136346145	0.0405727	UCCAGUU	ENSMUST00000048309.6|Camsap2|ENSMUSG00000041570.9|calmodulin regulated spectrin-associated protein family, member 2
mm10_v2_chr1_-_131527302_131527385	0.0394229	UCCAGUU	ENSMUST00000097588.2|Srgap2|ENSMUSG00000026425.9|SLIT-ROBO Rho GTPase activating protein 2
mm10_v2_chr19_-_28680077_28680122	0.0393172	UCCAGUU	ENSMUST00000162022.1|Glis3|ENSMUSG00000052942.7|GLIS family zinc finger 3 	ENSMUST00000112612.2|Glis3|ENSMUSG00000052942.7|GLIS family zinc finger 3
mm10_v2_chr10_+_52233612_52233672	0.0393057	UCCAGUU	ENSMUST00000069004.5|Dcbld1|ENSMUSG00000019891.7|discoidin, CUB  and LCCL domain containing 1 	ENSMUST00000105476.2|Dcbld1|ENSMUSG00000019891.7|discoidin, CUB  and LCCL domain containing 1
mm10_v2_chr5_-_143113008_143113020	0.038289	UCCAGUU	ENSMUST00000053498.8|Rnf216|ENSMUSG00000045078.8|ring finger protein 216
mm10_v2_chr6_+_30401866_30401965	0.0370817	UCCAGUU	ENSMUST00000068240.6|Klhdc10|ENSMUSG00000029775.8|kelch domain containing 10 	ENSMUST00000068259.6|Klhdc10|ENSMUSG00000029775.8|kelch domain containing 10
mm10_v2_chr2_-_181592733_181592803	0.0369552	UCCAGUU	ENSMUST00000108789.2|Znf512b|ENSMUSG00000000823.10|zinc finger protein 512B 	ENSMUST00000153998.1|Znf512b|ENSMUSG00000000823.10|zinc finger protein 512B
mm10_v2_chr9_-_67559703_67559703	0.0363503	UCCAGUU	ENSMUST00000040025.7|Tln2|ENSMUSG00000052698.8|talin 2
mm10_v2_chr7_+_120677579_120677630	0.0362248	UCCAGUU	ENSMUST00000060175.6|BC030336|ENSMUSG00000046096.6|cDNA sequence BC030336
mm10_v2_chr3_+_121953213_121953295	0.0354295	UCCAGUU	ENSMUST00000037958.7|Arhgap29|ENSMUSG00000039831.10|Rho GTPase activating protein 29 	ENSMUST00000128366.1|Arhgap29|ENSMUSG00000039831.10|Rho GTPase activating protein 29
mm10_v2_chr11_+_46055973_46056068	0.0354174	UCCAGUU	ENSMUST00000011400.7|Adam19|ENSMUSG00000011256.10|a disintegrin and metallopeptidase domain 19 (meltrin beta)
mm10_v2_chr12_-_65073927_65073954	0.0352581	UCCAGUU	ENSMUST00000021332.8|Fkbp3|ENSMUSG00000020949.8|FK506 binding protein 3
mm10_v2_chr13_+_49421229_49421311	0.0348313	UCCAGUU	ENSMUST00000021817.8|Ippk|ENSMUSG00000021385.9|inositol 1,3,4,5,6-pentakisphosphate 2-kinase
mm10_v2_chr9_+_106453838_106453911	0.034393	UCCAGUU	ENSMUST00000024260.6|Pcbp4|ENSMUSG00000023495.6|poly(rC) binding protein 4
mm10_v2_chr16_+_42907563_42907684	0.0343801	UCCAGUU	ENSMUST00000151244.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000114694.2|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr4_-_103215147_103215201	0.0335774	UCCAGUU	ENSMUST00000150285.1|Slc35d1|ENSMUSG00000028521.11|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1
mm10_v2_chr6_-_127151044_127151055	0.0328923	UCCAGUU	ENSMUST00000000188.8|Ccnd2|ENSMUSG00000000184.9|cyclin D2
mm10_v2_chr2_-_119477613_119477705	0.032613	UCCAGUU	ENSMUST00000110808.1|Ino80|ENSMUSG00000034154.9|INO80 homolog (S. cerevisiae) 	ENSMUST00000049920.7|Ino80|ENSMUSG00000034154.9|INO80 homolog (S. cerevisiae)
mm10_v2_chr11_-_102697710_102697782	0.032579	UCCAGUU	ENSMUST00000164506.2|Ccdc43|ENSMUSG00000020925.10|coiled-coil domain containing 43 	ENSMUST00000092569.6|Ccdc43|ENSMUSG00000020925.10|coiled-coil domain containing 43
mm10_v2_chr4_+_149518216_149518277	0.0321911	UCCAGUU	ENSMUST00000030839.6|Ctnnbip1|ENSMUSG00000028988.7|catenin beta interacting protein 1
mm10_v2_chr12_-_27342696_27342726	0.0320592	UCCAGUU	ENSMUST00000079063.5|Sox11|ENSMUSG00000063632.5|SRY-box containing gene 11
mm10_v2_chr10_+_22645011_22645109	0.0318272	UCCAGUU	ENSMUST00000042261.4|Slc2a12|ENSMUSG00000037490.5|solute carrier family 2 (facilitated glucose transporter), member 12
mm10_v2_chr4_-_108780782_108780803	0.031477	UCCAGUU	ENSMUST00000106657.1|Zfyve9|ENSMUSG00000034557.8|zinc finger, FYVE domain containing 9
mm10_v2_chr13_+_56702983_56703112	0.0314659	UCCAGUU	ENSMUST00000069557.7|Smad5|ENSMUSG00000021540.10|SMAD family member 5 	ENSMUST00000109876.1|Smad5|ENSMUSG00000021540.10|SMAD family member 5
mm10_v2_chr1_-_43827751_43827800	0.0312618	UCCAGUU	ENSMUST00000128261.1|Uxs1|ENSMUSG00000057363.6|UDP-glucuronate decarboxylase 1 	ENSMUST00000126008.1|Uxs1|ENSMUSG00000057363.6|UDP-glucuronate decarboxylase 1 	ENSMUST00000139451.1|Uxs1|ENSMUSG00000057363.6|UDP-glucuronate decarboxylase 1
mm10_v2_chr5_+_86804214_86804276	0.031221	UCCAGUU	ENSMUST00000119339.1|Ythdc1|ENSMUSG00000035851.8|YTH domain containing 1 	ENSMUST00000120498.1|Ythdc1|ENSMUSG00000035851.8|YTH domain containing 1
mm10_v2_chr2_-_72980402_72980471	0.0305532	UCCAGUU	ENSMUST00000066003.6|Sp3|ENSMUSG00000027109.10|trans-acting transcription factor 3 	ENSMUST00000102689.3|Sp3|ENSMUSG00000027109.10|trans-acting transcription factor 3
mm10_v2_chr12_+_111039334_111039400	0.0303328	UCCAGUU	ENSMUST00000084968.7|Rcor1|ENSMUSG00000037896.11|REST corepressor 1
mm10_v2_chr2_-_79456750_79456761	0.0302557	UCCAGUU	ENSMUST00000041099.4|Neurod1|ENSMUSG00000034701.9|neurogenic differentiation 1
mm10_v2_chr11_-_102319093_102319105	0.0301682	UCCAGUU	ENSMUST00000174302.1|Ubtf|ENSMUSG00000020923.11|upstream binding transcription factor, RNA polymerase I 	ENSMUST00000178839.1|Ubtf|ENSMUSG00000020923.11|upstream binding transcription factor, RNA polymerase I 	ENSMUST00000006754.7|Ubtf|ENSMUSG00000020923.11|upstream binding transcription factor, RNA polymerase I
mm10_v2_chr12_-_8499985_8500017	0.0299525	UCCAGUU	ENSMUST00000067384.4|Rhob|ENSMUSG00000054364.4|ras homolog gene family, member B
mm10_v2_chr13_-_111490111_111490139	0.0298479	UCCAGUU	ENSMUST00000047627.7|Gpbp1|ENSMUSG00000032745.11|GC-rich promoter binding protein 1
mm10_v2_chr12_-_54862783_54862921	0.0289964	UCCAGUU	ENSMUST00000078124.7|Cfl2|ENSMUSG00000062929.7|cofilin 2, muscle
mm10_v2_chr7_-_118491912_118491975	0.0289195	UCCAGUU	ENSMUST00000178344.1|Itpripl2|ENSMUSG00000095115.1|inositol 1,4,5-triphosphate receptor interacting protein-like 2
mm10_v2_chr5_+_32611171_32611245	0.0281379	UCCAGUU	ENSMUST00000072311.6|Yes1|ENSMUSG00000014932.9|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1 	ENSMUST00000168707.2|Yes1|ENSMUSG00000014932.9|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1
mm10_v2_chrX_-_108834303_108834381	0.0275142	UCCAGUU	ENSMUST00000101283.3|Brwd3|ENSMUSG00000063663.5|bromodomain and WD repeat domain containing 3 	ENSMUST00000150434.1|Brwd3|ENSMUSG00000063663.5|bromodomain and WD repeat domain containing 3
mm10_v2_chr11_-_69685537_69685565	0.0271983	UCCAGUU	ENSMUST00000018896.7|Tnfsf13|ENSMUSG00000089669.1|tumor necrosis factor (ligand) superfamily, member 13
mm10_v2_chr3_-_142881942_142882017	0.0267883	UCCAGUU	ENSMUST00000043812.8|Pkn2|ENSMUSG00000004591.10|protein kinase N2
mm10_v2_chr16_+_17451981_17452034	0.0260257	UCCAGUU	ENSMUST00000006293.3|Crkl|ENSMUSG00000006134.3|v-crk sarcoma virus CT10 oncogene homolog (avian)-like
mm10_v2_chr2_-_102400863_102400970	0.0257686	UCCAGUU	ENSMUST00000102573.1|Trim44|ENSMUSG00000027189.10|tripartite motif-containing 44
mm10_v2_chr19_+_28990476_28990497	0.0252272	UCCAGUU	ENSMUST00000050148.3|Cdc37l1|ENSMUSG00000024780.6|cell division cycle 37-like 1
mm10_v2_chrX_-_168123311_168123334	0.0251234	UCCAGUU	ENSMUST00000112149.1|Frmpd4|ENSMUSG00000049176.8|FERM and PDZ domain containing 4
mm10_v2_chr1_-_60566708_60566769	0.0245249	UCCAGUU	ENSMUST00000027168.5|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENSMUST00000090293.4|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENSMUST00000140485.1|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
mm10_v2_chr3_-_96905294_96905346	0.023756	UCCAGUU	ENSMUST00000029738.7|Gpr89|ENSMUSG00000028096.7|G protein-coupled receptor 89
mm10_v2_chr2_+_15055274_15055379	0.0233241	UCCAGUU	ENSMUST00000069870.3|Arl5b|ENSMUSG00000017418.7|ADP-ribosylation factor-like 5B
mm10_v2_chr11_-_76509419_76509435	0.0230979	UCCAGUU	ENSMUST00000094012.4|Abr|ENSMUSG00000017631.12|active BCR-related gene
mm10_v2_chr12_-_118301429_118301458	0.0223202	UCCAGUU	ENSMUST00000026367.9|Sp4|ENSMUSG00000025323.9|trans-acting transcription factor 4
mm10_v2_chr5_+_13399309_13399382	0.0220053	UCCAGUU	ENSMUST00000030714.7|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 	ENSMUST00000141968.1|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm10_v2_chr7_-_34313531_34313568	0.0217277	UCCAGUU	ENSMUST00000108074.1|4931406P16Rik|ENSMUSG00000066571.7|RIKEN cDNA 4931406P16 gene
mm10_v2_chr2_-_153241402_153241426	0.0215588	UCCAGUU	ENSMUST00000056924.7|Plagl2|ENSMUSG00000051413.11|pleiomorphic adenoma gene-like 2
mm10_v2_chr11_+_44617310_44617336	0.0214213	UCCAGUU	ENSMUST00000081265.5|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000101326.3|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000109268.1|Ebf1|ENSMUSG00000057098.8|early B cell factor 1
mm10_v2_chr13_-_85288999_85289058	0.0208517	UCCAGUU	ENSMUST00000109552.2|Rasa1|ENSMUSG00000021549.7|RAS p21 protein activator 1
mm10_v2_chr2_-_48949206_48949276	0.0207536	UCCAGUU	ENSMUST00000090976.3|Orc4|ENSMUSG00000026761.6|origin recognition complex, subunit 4 	ENSMUST00000149679.1|Orc4|ENSMUSG00000026761.6|origin recognition complex, subunit 4 	ENSMUST00000028098.4|Orc4|ENSMUSG00000026761.6|origin recognition complex, subunit 4
mm10_v2_chr9_-_108263887_108263965	0.0206473	UCCAGUU	ENSMUST00000166905.1|Dag1|ENSMUSG00000039952.9|dystroglycan 1 	ENSMUST00000080435.2|Dag1|ENSMUSG00000039952.9|dystroglycan 1
mm10_v2_chr9_+_74953053_74953091	0.0204888	UCCAGUU	ENSMUST00000170846.1|Fam214a|ENSMUSG00000034858.9|family with sequence similarity 214, member A
mm10_v2_chr7_-_89338709_89338795	0.0204683	UCCAGUU	ENSMUST00000137723.1|Tmem135|ENSMUSG00000039428.4|transmembrane protein 135 	ENSMUST00000117852.1|Tmem135|ENSMUSG00000039428.4|transmembrane protein 135 	ENSMUST00000041968.3|Tmem135|ENSMUSG00000039428.4|transmembrane protein 135
mm10_v2_chr1_+_105990384_105990498	0.0204174	UCCAGUU	ENSMUST00000119166.1|Zcchc2|ENSMUSG00000038866.9|zinc finger, CCHC domain containing 2
mm10_v2_chr11_+_116843278_116843278	0.0200103	UCCAGUU	ENSMUST00000106370.3|Mettl23|ENSMUSG00000090266.4|methyltransferase like 23
mm10_v2_chr12_-_86079019_86079041	0.0199717	UCCAGUU	ENSMUST00000003687.6|Tgfb3|ENSMUSG00000021253.6|transforming growth factor, beta 3
mm10_v2_chr16_+_45094036_45094053	0.0196072	UCCAGUU	ENSMUST00000061050.5|Ccdc80|ENSMUSG00000022665.8|coiled-coil domain containing 80
mm10_v2_chr12_+_78226627_78226655	0.0195161	UCCAGUU	ENSMUST00000110388.2|Gphn|ENSMUSG00000047454.5|gephyrin 	ENSMUST00000052472.4|Gphn|ENSMUSG00000047454.5|gephyrin
mm10_v2_chr11_+_97362396_97362551	0.0183725	UCCAGUU	ENSMUST00000045540.3|Socs7|ENSMUSG00000038485.5|suppressor of cytokine signaling 7
mm10_v2_chr9_-_108190352_108190420	0.01831	UCCAGUU	ENSMUST00000035208.7|Bsn|ENSMUSG00000032589.8|bassoon
mm10_v2_chr11_-_19018956_19018973	0.0178666	UCCAGUU	ENSMUST00000068264.7|Meis1|ENSMUSG00000020160.12|Meis homeobox 1 	ENSMUST00000144988.1|Meis1|ENSMUSG00000020160.12|Meis homeobox 1 	ENSMUST00000185131.1|Meis1|ENSMUSG00000020160.12|Meis homeobox 1
mm10_v2_chr7_-_79920599_79920658	0.0175956	UCCAGUU	ENSMUST00000075657.6|Ap3s2|ENSMUSG00000063801.6|adaptor-related protein complex 3, sigma 2 subunit
mm10_v2_chr3_-_9610074_9610086	0.0174	UCCAGUU	ENSMUST00000041124.7|Zfp704|ENSMUSG00000040209.7|zinc finger protein 704
mm10_v2_chr6_+_100833606_100833663	0.0171255	UCCAGUU	ENSMUST00000063854.4|Ppp4r2|ENSMUSG00000052144.6|protein phosphatase 4, regulatory subunit 2
mm10_v2_chr12_-_79296266_79296310	0.0167592	UCCAGUU	ENSMUST00000021547.6|Zfyve26|ENSMUSG00000066440.4|zinc finger, FYVE domain containing 26
mm10_v2_chr8_+_105170668_105170686	0.0163982	UCCAGUU	ENSMUST00000109395.1|Cbfb|ENSMUSG00000031885.7|core binding factor beta 	ENSMUST00000109394.1|Cbfb|ENSMUSG00000031885.7|core binding factor beta 	ENSMUST00000052209.2|Cbfb|ENSMUSG00000031885.7|core binding factor beta 	ENSMUST00000109392.1|Cbfb|ENSMUSG00000031885.7|core binding factor beta
mm10_v2_chr16_-_32247152_32247179	0.0162885	UCCAGUU	ENSMUST00000042732.5|Fbxo45|ENSMUSG00000035764.5|F-box protein 45
mm10_v2_chr3_+_9250602_9250602	0.0162405	UCCAGUU	ENSMUST00000155203.1|Zbtb10|ENSMUSG00000069114.8|zinc finger and BTB domain containing 10
mm10_v2_chr1_-_186705980_186705999	0.0153714	UCCAGUU	ENSMUST00000045288.8|Tgfb2|ENSMUSG00000039239.9|transforming growth factor, beta 2
mm10_v2_chr11_-_88718223_88718294	0.0150655	UCCAGUU	ENSMUST00000107909.1|Msi2|ENSMUSG00000069769.7|musashi RNA-binding protein 2
mm10_v2_chr6_+_129533183_129533205	0.014235	UCCAGUU	ENSMUST00000032264.6|Gabarapl1|ENSMUSG00000030161.6|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1
mm10_v2_chr5_+_3928267_3928300	0.0140154	UCCAGUU	ENSMUST00000044492.8|Akap9|ENSMUSG00000040407.11|A kinase (PRKA) anchor protein (yotiao) 9
mm10_v2_chr1_-_16619437_16619489	0.0135605	UCCAGUU	ENSMUST00000117146.1|Ube2w|ENSMUSG00000025939.11|ubiquitin-conjugating enzyme E2W (putative)
mm10_v2_chr7_-_28598140_28598185	0.0131345	UCCAGUU	ENSMUST00000040531.8|Samd4b|ENSMUSG00000037513.9|sterile alpha motif domain containing 4B 	ENSMUST00000108283.1|Pak4|ENSMUSG00000030602.6|p21 protein (Cdc42/Rac)-activated kinase 4
mm10_v2_chr8_-_67974567_67974596	0.0130589	UCCAGUU	ENSMUST00000098696.3|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000038959.9|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000093469.4|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr4_+_124986430_124986490	0.0123852	UCCAGUU	ENSMUST00000030687.7|Rspo1|ENSMUSG00000028871.7|R-spondin homolog (Xenopus laevis)
mm10_v2_chr2_-_131562283_131562283	0.012357	UCCAGUU	ENSMUST00000103184.3|Adra1d|ENSMUSG00000027335.9|adrenergic receptor, alpha 1d
mm10_v2_chr2_-_6884975_6884996	0.0122901	UCCAGUU	ENSMUST00000114924.3|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000170438.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000114934.4|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr10_-_78352323_78352459	0.0121023	UCCAGUU	ENSMUST00000001240.5|Agpat3|ENSMUSG00000001211.8|1-acylglycerol-3-phosphate O-acyltransferase 3
mm10_v2_chr8_+_72135247_72135264	0.0119893	UCCAGUU	ENSMUST00000003575.9|Tpm4|ENSMUSG00000031799.9|tropomyosin 4
mm10_v2_chr15_-_28025834_28025879	0.0104219	UCCAGUU	ENSMUST00000090247.5|Trio|ENSMUSG00000022263.9|triple functional domain (PTPRF interacting)
mm10_v2_chr13_-_98891036_98891063	0.0102368	UCCAGUU	ENSMUST00000109399.2|Tnpo1|ENSMUSG00000009470.10|transportin 1
mm10_v2_chr10_-_14544972_14545036	0.00998269	UCCAGUU	ENSMUST00000041168.4|Gpr126|ENSMUSG00000039116.4|G protein-coupled receptor 126
mm10_v2_chr15_-_81400043_81400093	0.0099268	UCCAGUU	ENSMUST00000172107.1|St13|ENSMUSG00000022403.8|suppression of tumorigenicity 13 	ENSMUST00000169204.1|St13|ENSMUSG00000022403.8|suppression of tumorigenicity 13 	ENSMUST00000163382.1|St13|ENSMUSG00000022403.8|suppression of tumorigenicity 13
mm10_v2_chr2_+_31759932_31759989	0.00983973	UCCAGUU	ENSMUST00000028190.6|Abl1|ENSMUSG00000026842.10|c-abl oncogene 1, non-receptor tyrosine kinase
mm10_v2_chr13_-_24280716_24280795	0.00948841	UCCAGUU	ENSMUST00000110398.2|Lrrc16a|ENSMUSG00000021338.11|leucine rich repeat containing 16A 	ENSMUST00000072889.5|Lrrc16a|ENSMUSG00000021338.11|leucine rich repeat containing 16A
mm10_v2_chr18_-_13972617_13972733	0.00934461	UCCAGUU	ENSMUST00000025288.7|Zfp521|ENSMUSG00000024420.8|zinc finger protein 521
mm10_v2_chr10_-_84440591_84440604	0.00927001	UCCAGUU	ENSMUST00000020220.8|Nuak1|ENSMUSG00000020032.8|NUAK family, SNF1-like kinase, 1
mm10_v2_chr1_-_165634451_165634576	0.00919936	UCCAGUU	ENSMUST00000111435.2|Mpzl1|ENSMUSG00000026566.9|myelin protein zero-like 1 	ENSMUST00000068705.7|Mpzl1|ENSMUSG00000026566.9|myelin protein zero-like 1
mm10_v2_chr4_+_155491353_155491411	0.00885156	UCCAGUU	ENSMUST00000165335.1|Gnb1|ENSMUSG00000029064.9|guanine nucleotide binding protein (G protein), beta 1 	ENSMUST00000105616.3|Gnb1|ENSMUSG00000029064.9|guanine nucleotide binding protein (G protein), beta 1 	ENSMUST00000030940.7|Gnb1|ENSMUSG00000029064.9|guanine nucleotide binding protein (G protein), beta 1
mm10_v2_chr14_-_70766598_70766644	0.00874499	UCCAGUU	ENSMUST00000167242.1|Xpo7|ENSMUSG00000022100.7|exportin 7 	ENSMUST00000022696.6|Xpo7|ENSMUSG00000022100.7|exportin 7
mm10_v2_chr4_+_139192899_139192941	0.00833003	UCCAGUU	ENSMUST00000102508.3|Capzb|ENSMUSG00000028745.12|capping protein (actin filament) muscle Z-line, beta 	ENSMUST00000131912.1|Capzb|ENSMUSG00000028745.12|capping protein (actin filament) muscle Z-line, beta 	ENSMUST00000102507.3|Capzb|ENSMUSG00000028745.12|capping protein (actin filament) muscle Z-line, beta
mm10_v2_chr5_-_147725988_147726023	0.00825773	UCCAGUU	ENSMUST00000110529.1|Flt1|ENSMUSG00000029648.7|FMS-like tyrosine kinase 1 	ENSMUST00000031652.3|Flt1|ENSMUSG00000029648.7|FMS-like tyrosine kinase 1 	ENSMUST00000031653.5|Flt1|ENSMUSG00000029648.7|FMS-like tyrosine kinase 1
mm10_v2_chr12_+_37241633_37241654	0.00824307	UCCAGUU	ENSMUST00000049874.7|Agmo|ENSMUSG00000050103.11|alkylglycerol monooxygenase
mm10_v2_chr2_-_57114970_57115038	0.00747958	UCCAGUU	ENSMUST00000028166.2|Nr4a2|ENSMUSG00000026826.7|nuclear receptor subfamily 4, group A, member 2
mm10_v2_chr1_-_182341585_182341625	0.00725251	UCCAGUU	ENSMUST00000051431.4|Fbxo28|ENSMUSG00000047539.4|F-box protein 28
mm10_v2_chr13_+_92844750_92844790	0.00642125	UCCAGUU	ENSMUST00000076169.3|Mtx3|ENSMUSG00000021704.7|metaxin 3
mm10_v2_chr3_-_145649970_145649992	0.00622333	UCCAGUU	ENSMUST00000029846.3|Cyr61|ENSMUSG00000028195.3|cysteine rich protein 61
mm10_v2_chrX_+_69360294_69360387	0.00620291	UCCAGUU	ENSMUST00000033532.6|Aff2|ENSMUSG00000031189.6|AF4/FMR2 family, member 2
mm10_v2_chr8_+_33386325_33386325	0.00611394	UCCAGUU	ENSMUST00000078058.3|Purg|ENSMUSG00000049184.5|purine-rich element binding protein G 	ENSMUST00000070340.4|Purg|ENSMUSG00000049184.5|purine-rich element binding protein G
mm10_v2_chr9_-_110462436_110462480	0.00609803	UCCAGUU	ENSMUST00000111933.1|Klhl18|ENSMUSG00000054792.9|kelch-like 18
mm10_v2_chr5_-_142906702_142906754	0.00580247	UCCAGUU	ENSMUST00000167721.1|Actb|ENSMUSG00000029580.8|actin, beta 	ENSMUST00000163829.1|Actb|ENSMUSG00000029580.8|actin, beta 	ENSMUST00000100497.4|Actb|ENSMUSG00000029580.8|actin, beta
mm10_v2_chr13_+_20090538_20090633	0.00572846	UCCAGUU	ENSMUST00000072519.5|Elmo1|ENSMUSG00000041112.9|engulfment and cell motility 1
mm10_v2_chr9_-_79718518_79718592	0.00526001	UCCAGUU	ENSMUST00000071750.6|Col12a1|ENSMUSG00000032332.11|collagen, type XII, alpha 1
mm10_v2_chr2_+_102658640_102658669	0.00495871	UCCAGUU	ENSMUST00000080210.3|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm10_v2_chr16_+_37868383_37868481	0.00434583	UCCAGUU	ENSMUST00000078717.6|Lrrc58|ENSMUSG00000034158.9|leucine rich repeat containing 58
mm10_v2_chr6_+_4903298_4903346	0.00423828	UCCAGUU	ENSMUST00000035813.2|Ppp1r9a|ENSMUSG00000032827.9|protein phosphatase 1, regulatory (inhibitor) subunit 9A
mm10_v2_chr14_+_7817957_7817994	0.00401351	UCCAGUU	ENSMUST00000052678.8|Flnb|ENSMUSG00000025278.8|filamin, beta
mm10_v2_chr17_-_10319324_10319380	0.0034783	UCCAGUU	ENSMUST00000097414.3|Qk|ENSMUSG00000062078.8|quaking 	ENSMUST00000042296.7|Qk|ENSMUSG00000062078.8|quaking
mm10_v2_chr5_-_102069905_102069940	0.00340692	UCCAGUU	ENSMUST00000053177.7|Wdfy3|ENSMUSG00000043940.8|WD repeat and FYVE domain containing 3 	ENSMUST00000174698.1|Wdfy3|ENSMUSG00000043940.8|WD repeat and FYVE domain containing 3
mm10_v2_chr18_+_60526194_60526234	0.00337221	UCCAGUU	ENSMUST00000025505.5|Dctn4|ENSMUSG00000024603.7|dynactin 4
mm10_v2_chr17_+_80944611_80944644	0.00306684	UCCAGUU	ENSMUST00000025092.4|Tmem178|ENSMUSG00000024245.4|transmembrane protein 178
mm10_v2_chr9_-_51008936_51009080	0.00261137	UCCAGUU	ENSMUST00000176824.1|Sik2|ENSMUSG00000037112.10|salt inducible kinase 2 	ENSMUST00000176663.1|Sik2|ENSMUSG00000037112.10|salt inducible kinase 2 	ENSMUST00000041375.10|Sik2|ENSMUSG00000037112.10|salt inducible kinase 2
mm10_v2_chr13_+_47122719_47122761	0.0025361	UCCAGUU	ENSMUST00000068891.4|Rnf144b|ENSMUSG00000038068.8|ring finger protein 144B
mm10_v2_chr13_+_9093893_9093927	0.00218188	UCCAGUU	ENSMUST00000091829.2|Larp4b|ENSMUSG00000033499.7|La ribonucleoprotein domain family, member 4B
mm10_v2_chr1_+_163779575_163779592	0.00208461	UCCAGUU	ENSMUST00000027877.6|Kifap3|ENSMUSG00000026585.7|kinesin-associated protein 3 	ENSMUST00000077642.5|Kifap3|ENSMUSG00000026585.7|kinesin-associated protein 3
mm10_v2_chr7_+_5062143_5062241	0.00205299	UCCAGUU	ENSMUST00000005041.7|U2af2|ENSMUSG00000030435.9|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2
mm10_v2_chr8_-_79399513_79399532	0.00195125	UCCAGUU	ENSMUST00000066091.7|Smad1|ENSMUSG00000031681.8|SMAD family member 1 	ENSMUST00000109885.1|Smad1|ENSMUSG00000031681.8|SMAD family member 1 	ENSMUST00000066081.3|Smad1|ENSMUSG00000031681.8|SMAD family member 1
mm10_v2_chr16_-_58523349_58523426	0.00186843	UCCAGUU	ENSMUST00000137035.1|St3gal6|ENSMUSG00000022747.10|ST3 beta-galactoside alpha-2,3-sialyltransferase 6
mm10_v2_chr12_-_51829525_51829553	0.00178667	UCCAGUU	ENSMUST00000179265.1|Hectd1|ENSMUSG00000035247.9|HECT domain containing 1 	ENSMUST00000042052.8|Hectd1|ENSMUSG00000035247.9|HECT domain containing 1
mm10_v2_chr1_-_69685937_69685966	0.00169725	UCCAGUU	ENSMUST00000027146.2|Ikzf2|ENSMUSG00000025997.7|IKAROS family zinc finger 2
mm10_v2_chr12_-_69681795_69681869	0.00159746	UCCAGUU	ENSMUST00000183277.1|Sos2|ENSMUSG00000034801.7|son of sevenless homolog 2 (Drosophila) 	ENSMUST00000035773.7|Sos2|ENSMUSG00000034801.7|son of sevenless homolog 2 (Drosophila)
mm10_v2_chr10_+_128303322_128303352	0.000920153	UCCAGUU	ENSMUST00000005825.6|Pan2|ENSMUSG00000005682.8|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)
mm10_v2_chr8_-_18741542_18741566	0.000420094	UCCAGUU	ENSMUST00000033846.6|Angpt2|ENSMUSG00000031465.6|angiopoietin 2
mm10_v2_chr7_-_110614761_110614928	7.85811e-05	UCCAGUU	ENSMUST00000166020.1|Sbf2|ENSMUSG00000038371.8|SET binding factor 2 	ENSMUST00000171218.1|Sbf2|ENSMUSG00000038371.8|SET binding factor 2 	ENSMUST00000033058.7|Sbf2|ENSMUSG00000038371.8|SET binding factor 2 	ENSMUST00000164759.1|Sbf2|ENSMUSG00000038371.8|SET binding factor 2
