mm10_v2_chrX_+_20870166_20870226	0.841341	Zkscan1	ENSMUST00000115342.3|Timp1|ENSMUSG00000001131.5|tissue inhibitor of metalloproteinase 1 	ENSMUST00000009530.4|Timp1|ENSMUSG00000001131.5|tissue inhibitor of metalloproteinase 1
mm10_v2_chr10_+_127000709_127000747	0.521099	Zkscan1	ENSMUST00000026500.5|Avil|ENSMUSG00000025432.5|advillin 	ENSMUST00000142698.1|Avil|ENSMUSG00000025432.5|advillin
mm10_v2_chr7_-_31111148_31111180	0.38294	Zkscan1	ENSMUST00000164929.1|Hpn|ENSMUSG00000001249.8|hepsin
mm10_v2_chr3_-_88378699_88378753	0.357099	Zkscan1	ENSMUST00000098956.2|Bglap2|ENSMUSG00000074486.2|bone gamma-carboxyglutamate protein 2
mm10_v2_chr15_-_78572754_78572790	0.355734	Zkscan1	ENSMUST00000043214.6|Rac2|ENSMUSG00000033220.6|RAS-related C3 botulinum substrate 2
mm10_v2_chr15_-_74983430_74983430	0.347761	Zkscan1	ENSMUST00000023250.4|Ly6i|ENSMUSG00000022586.5|lymphocyte antigen 6 complex, locus I 	ENSMUST00000166694.1|Ly6i|ENSMUSG00000022586.5|lymphocyte antigen 6 complex, locus I
mm10_v2_chr10_+_79881023_79881042	0.307363	Zkscan1	ENSMUST00000166201.1|Prtn3|ENSMUSG00000057729.6|proteinase 3
mm10_v2_chr2_+_153492790_153492790	0.280664	Zkscan1	ENSMUST00000109783.1|4930404H24Rik|ENSMUSG00000079001.1|RIKEN cDNA 4930404H24 gene
mm10_v2_chr8_+_13037308_13037390	0.2805	Zkscan1	ENSMUST00000063820.5|F10|ENSMUSG00000031444.10|coagulation factor X 	ENSMUST00000033821.4|F10|ENSMUSG00000031444.10|coagulation factor X
mm10_v2_chr4_+_101419277_101419332	0.278485	Zkscan1	ENSMUST00000102780.1|Ak4|ENSMUSG00000028527.12|adenylate kinase 4 	ENSMUST00000106946.1|Ak4|ENSMUSG00000028527.12|adenylate kinase 4 	ENSMUST00000106945.1|Ak4|ENSMUSG00000028527.12|adenylate kinase 4
mm10_v2_chr7_-_132813715_132813733	0.271758	Zkscan1	ENSMUST00000134946.1|Fam53b|ENSMUSG00000030956.9|family with sequence similarity 53, member B
mm10_v2_chr11_+_28853189_28853259	0.261844	Zkscan1	ENSMUST00000020759.5|Efemp1|ENSMUSG00000020467.9|epidermal growth factor-containing fibulin-like extracellular matrix protein 1
mm10_v2_chr2_+_31245801_31245900	0.255933	Zkscan1	ENSMUST00000000199.7|Ncs1|ENSMUSG00000062661.6|neuronal calcium sensor 1
mm10_v2_chr9_+_51213683_51213697	0.246383	Zkscan1	ENSMUST00000034554.7|Pou2af1|ENSMUSG00000032053.7|POU domain, class 2, associating factor 1
mm10_v2_chr4_+_129960760_129960808	0.241188	Zkscan1	ENSMUST00000139884.1|1700003M07Rik|ENSMUSG00000085389.1|RIKEN cDNA 1700003M07 gene
mm10_v2_chr2_+_55411790_55411819	0.230015	Zkscan1	ENSMUST00000155997.1|Gm14033|ENSMUSG00000087040.1|predicted gene 14033 	ENSMUST00000128307.1|Gm14033|ENSMUSG00000087040.1|predicted gene 14033
mm10_v2_chr3_+_62338344_62338344	0.217365	Zkscan1	ENSMUST00000079300.6|Arhgef26|ENSMUSG00000036885.8|Rho guanine nucleotide exchange factor (GEF) 26
mm10_v2_chr19_+_12798574_12798606	0.214443	Zkscan1	ENSMUST00000025601.6|Lpxn|ENSMUSG00000024696.8|leupaxin
mm10_v2_chr15_+_83779999_83780033	0.2117	Zkscan1	ENSMUST00000046168.5|Mpped1|ENSMUSG00000041708.6|metallophosphoesterase domain containing 1
mm10_v2_chr8_+_13037802_13037838	0.211673	Zkscan1	ENSMUST00000152034.1|F10|ENSMUSG00000031444.10|coagulation factor X 	ENSMUST00000128418.1|F10|ENSMUSG00000031444.10|coagulation factor X
mm10_v2_chr1_+_171840607_171840641	0.203153	Zkscan1	ENSMUST00000136479.1|Cd84|ENSMUSG00000038147.7|CD84 antigen 	ENSMUST00000042302.6|Cd84|ENSMUSG00000038147.7|CD84 antigen
mm10_v2_chr1_-_193264006_193264079	0.201398	Zkscan1	ENSMUST00000161737.1|Hsd11b1|ENSMUSG00000016194.8|hydroxysteroid 11-beta dehydrogenase 1
mm10_v2_chrX_+_164373363_164373378	0.200053	Zkscan1	ENSMUST00000033751.7|Figf|ENSMUSG00000031380.10|c-fos induced growth factor
mm10_v2_chr12_-_76818374_76818395	0.195589	Zkscan1	ENSMUST00000118604.1|Rab15|ENSMUSG00000021062.9|RAB15, member RAS oncogene family
mm10_v2_chr18_-_52529847_52529890	0.170815	Zkscan1	ENSMUST00000171470.1|Lox|ENSMUSG00000024529.7|lysyl oxidase
mm10_v2_chr4_+_138972885_138972920	0.164696	Zkscan1	ENSMUST00000123636.1|Tmco4|ENSMUSG00000041143.10|transmembrane and coiled-coil domains 4 	ENSMUST00000043042.3|Tmco4|ENSMUSG00000041143.10|transmembrane and coiled-coil domains 4 	ENSMUST00000050949.2|Tmco4|ENSMUSG00000041143.10|transmembrane and coiled-coil domains 4
mm10_v2_chr9_+_119052770_119052802	0.160174	Zkscan1	ENSMUST00000051386.6|Vill|ENSMUSG00000038775.8|villin-like 	ENSMUST00000074734.6|Vill|ENSMUSG00000038775.8|villin-like
mm10_v2_chr15_-_75111684_75111684	0.155222	Zkscan1	ENSMUST00000100542.3|Ly6c2|ENSMUSG00000022584.8|lymphocyte antigen 6 complex, locus C2
mm10_v2_chr15_+_101224207_101224231	0.148322	Zkscan1	ENSMUST00000000543.4|Grasp|ENSMUSG00000000531.4|GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein
mm10_v2_chr2_-_27248335_27248346	0.144575	Zkscan1	ENSMUST00000139312.1|Sardh|ENSMUSG00000009614.10|sarcosine dehydrogenase
mm10_v2_chr6_-_145047725_145047853	0.144413	Zkscan1	ENSMUST00000123930.1|Bcat1|ENSMUSG00000030268.11|branched chain aminotransferase 1, cytosolic
mm10_v2_chr11_-_78165521_78165589	0.14178	Zkscan1	ENSMUST00000017530.3|Traf4|ENSMUSG00000017386.4|TNF receptor associated factor 4
mm10_v2_chr11_+_78826575_78826618	0.141459	Zkscan1	ENSMUST00000147875.2|Lyrm9|ENSMUSG00000072640.5|LYR motif containing 9 	ENSMUST00000141321.1|Lyrm9|ENSMUSG00000072640.5|LYR motif containing 9
mm10_v2_chr8_-_70527945_70527982	0.138961	Zkscan1	ENSMUST00000138260.1|Kxd1|ENSMUSG00000055553.10|KxDL motif containing 1 	ENSMUST00000117580.1|Kxd1|ENSMUSG00000055553.10|KxDL motif containing 1
mm10_v2_chr7_+_24370255_24370312	0.133558	Zkscan1	ENSMUST00000171904.1|Kcnn4|ENSMUSG00000054342.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4
mm10_v2_chr2_+_163820832_163820894	0.117779	Zkscan1	ENSMUST00000029188.7|Wisp2|ENSMUSG00000027656.7|WNT1 inducible signaling pathway protein 2
mm10_v2_chr6_-_145047636_145047661	0.116464	Zkscan1	ENSMUST00000149769.1|Bcat1|ENSMUSG00000030268.11|branched chain aminotransferase 1, cytosolic
mm10_v2_chr2_-_156839790_156839892	0.106288	Zkscan1	ENSMUST00000134838.1|Gm14230|ENSMUSG00000087179.2|predicted gene 14230 	ENSMUST00000137463.1|Gm14230|ENSMUSG00000087179.2|predicted gene 14230 	ENSMUST00000149275.2|Gm14230|ENSMUSG00000087179.2|predicted gene 14230
mm10_v2_chr14_-_8309770_8309795	0.105973	Zkscan1	ENSMUST00000121887.1|Fam107a|ENSMUSG00000021750.9|family with sequence similarity 107, member A 	ENSMUST00000036070.8|Fam107a|ENSMUSG00000021750.9|family with sequence similarity 107, member A 	ENSMUST00000137133.1|Fam107a|ENSMUSG00000021750.9|family with sequence similarity 107, member A
mm10_v2_chr19_-_10525201_10525214	0.100133	Zkscan1	ENSMUST00000025570.6|Sdhaf2|ENSMUSG00000024668.7|succinate dehydrogenase complex assembly factor 2
mm10_v2_chr15_+_16778101_16778101	0.0958681	Zkscan1	ENSMUST00000026432.6|Cdh9|ENSMUSG00000025370.6|cadherin 9
mm10_v2_chr2_+_112261926_112261951	0.0958483	Zkscan1	ENSMUST00000028553.3|Nop10|ENSMUSG00000027133.3|NOP10 ribonucleoprotein
mm10_v2_chr12_+_73997749_73997817	0.0898956	Zkscan1	ENSMUST00000110451.2|Syt16|ENSMUSG00000044912.9|synaptotagmin XVI
mm10_v2_chr10_+_90829409_90829481	0.0845579	Zkscan1	ENSMUST00000182202.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000182966.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr15_-_34356421_34356421	0.0827745	Zkscan1	ENSMUST00000179647.1|9430069I07Rik|ENSMUSG00000094447.1|RIKEN cDNA 9430069I07 gene
mm10_v2_chr5_-_28210168_28210179	0.0823399	Zkscan1	ENSMUST00000117098.1|Cnpy1|ENSMUSG00000044681.12|canopy 1 homolog (zebrafish)
mm10_v2_chr5_-_70842617_70842617	0.0816659	Zkscan1	ENSMUST00000031119.1|Gabrg1|ENSMUSG00000001260.6|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1
mm10_v2_chr4_+_141444654_141444714	0.0793402	Zkscan1	ENSMUST00000006377.6|Zbtb17|ENSMUSG00000006215.6|zinc finger and BTB domain containing 17
mm10_v2_chr9_+_62341329_62341390	0.0792271	Zkscan1	ENSMUST00000085519.6|Anp32a|ENSMUSG00000032249.8|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
mm10_v2_chr7_+_44676965_44676965	0.0772098	Zkscan1	ENSMUST00000094460.1|2310016G11Rik|ENSMUSG00000070574.1|RIKEN cDNA 2310016G11 gene
mm10_v2_chr15_-_74997634_74997634	0.0747617	Zkscan1	ENSMUST00000023248.6|Ly6a|ENSMUSG00000075602.4|lymphocyte antigen 6 complex, locus A
mm10_v2_chr9_+_106368594_106368640	0.0733244	Zkscan1	ENSMUST00000172306.2|Dusp7|ENSMUSG00000053716.7|dual specificity phosphatase 7
mm10_v2_chr17_-_56117265_56117298	0.0729254	Zkscan1	ENSMUST00000113072.2|Plin5|ENSMUSG00000011305.5|perilipin 5
mm10_v2_chr6_+_47877204_47877204	0.0726533	Zkscan1	ENSMUST00000061890.7|Zfp282|ENSMUSG00000025821.9|zinc finger protein 282
mm10_v2_chr2_+_172393900_172393964	0.0725147	Zkscan1	ENSMUST00000109136.2|Cass4|ENSMUSG00000074570.7|Cas scaffolding protein family member 4
mm10_v2_chr10_+_90829538_90829566	0.0713797	Zkscan1	ENSMUST00000179694.2|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr18_+_61105844_61105890	0.0707521	Zkscan1	ENSMUST00000115268.3|Csf1r|ENSMUSG00000024621.9|colony stimulating factor 1 receptor
mm10_v2_chr1_-_56969864_56969875	0.068163	Zkscan1	ENSMUST00000177424.1|Satb2|ENSMUSG00000038331.9|special AT-rich sequence binding protein 2
mm10_v2_chr3_+_90062781_90062836	0.0671261	Zkscan1	ENSMUST00000029551.2|1700094D03Rik|ENSMUSG00000078667.2|RIKEN cDNA 1700094D03 gene
mm10_v2_chr11_-_69981242_69981264	0.0664118	Zkscan1	ENSMUST00000108594.1|Elp5|ENSMUSG00000018565.11|elongator acetyltransferase complex subunit 5
mm10_v2_chr2_+_172393794_172393829	0.0659226	Zkscan1	ENSMUST00000099061.2|Cass4|ENSMUSG00000074570.7|Cas scaffolding protein family member 4 	ENSMUST00000103073.2|Cass4|ENSMUSG00000074570.7|Cas scaffolding protein family member 4
mm10_v2_chrX_+_159372175_159372290	0.0641134	Zkscan1	ENSMUST00000087143.6|Eif1ax|ENSMUSG00000067194.6|eukaryotic translation initiation factor 1A, X-linked
mm10_v2_chrX_+_56872543_56872543	0.0631863	Zkscan1	ENSMUST00000153784.1|Gpr112|ENSMUSG00000053852.5|G protein-coupled receptor 112
mm10_v2_chr10_+_90829835_90829848	0.061877	Zkscan1	ENSMUST00000179964.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr5_-_134229581_134229625	0.061839	Zkscan1	ENSMUST00000111275.1|Ncf1|ENSMUSG00000015950.7|neutrophil cytosolic factor 1 	ENSMUST00000016094.6|Ncf1|ENSMUSG00000015950.7|neutrophil cytosolic factor 1 	ENSMUST00000144086.1|Ncf1|ENSMUSG00000015950.7|neutrophil cytosolic factor 1
mm10_v2_chr19_-_61228396_61228454	0.061032	Zkscan1	ENSMUST00000076046.6|Csf2ra|ENSMUSG00000059326.6|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)
mm10_v2_chrX_-_78583882_78583901	0.0608887	Zkscan1	ENSMUST00000114025.1|Prrg1|ENSMUSG00000047996.10|proline rich Gla (G-carboxyglutamic acid) 1 	ENSMUST00000134602.1|Prrg1|ENSMUSG00000047996.10|proline rich Gla (G-carboxyglutamic acid) 1 	ENSMUST00000114024.2|Prrg1|ENSMUSG00000047996.10|proline rich Gla (G-carboxyglutamic acid) 1
mm10_v2_chr10_+_90829780_90829791	0.0605538	Zkscan1	ENSMUST00000179337.2|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr13_+_68597425_68597473	0.0604914	Zkscan1	ENSMUST00000022007.6|1700001L19Rik|ENSMUSG00000021534.7|RIKEN cDNA 1700001L19 gene
mm10_v2_chr11_+_78512193_78512237	0.0593814	Zkscan1	ENSMUST00000001127.4|Poldip2|ENSMUSG00000001100.4|polymerase (DNA-directed), delta interacting protein 2
mm10_v2_chr17_+_87107621_87107684	0.0583238	Zkscan1	ENSMUST00000041369.6|Socs5|ENSMUSG00000037104.8|suppressor of cytokine signaling 5
mm10_v2_chr17_+_34039437_34039481	0.0556003	Zkscan1	ENSMUST00000131134.1|Col11a2|ENSMUSG00000024330.10|collagen, type XI, alpha 2 	ENSMUST00000087497.4|Col11a2|ENSMUSG00000024330.10|collagen, type XI, alpha 2 	ENSMUST00000114255.1|Col11a2|ENSMUSG00000024330.10|collagen, type XI, alpha 2 	ENSMUST00000114252.1|Col11a2|ENSMUSG00000024330.10|collagen, type XI, alpha 2
mm10_v2_chr11_-_61453992_61454106	0.0552499	Zkscan1	ENSMUST00000060255.7|Rnf112|ENSMUSG00000010086.11|ring finger protein 112 	ENSMUST00000054927.7|Rnf112|ENSMUSG00000010086.11|ring finger protein 112 	ENSMUST00000102661.3|Rnf112|ENSMUSG00000010086.11|ring finger protein 112
mm10_v2_chr5_-_140321524_140321585	0.0548237	Zkscan1	ENSMUST00000031534.6|Mad1l1|ENSMUSG00000029554.9|MAD1 mitotic arrest deficient 1-like 1
mm10_v2_chr13_+_50417856_50417872	0.0544521	Zkscan1	ENSMUST00000046974.4|Fbxw17|ENSMUSG00000037816.4|F-box and WD-40 domain protein 17
mm10_v2_chr18_+_53245618_53245662	0.0540983	Zkscan1	ENSMUST00000165032.1|Snx24|ENSMUSG00000024535.9|sorting nexing 24
mm10_v2_chr1_-_171150588_171150609	0.0535609	Zkscan1	ENSMUST00000155798.1|Sdhc|ENSMUSG00000058076.6|succinate dehydrogenase complex, subunit C, integral membrane protein 	ENSMUST00000081560.4|Sdhc|ENSMUSG00000058076.6|succinate dehydrogenase complex, subunit C, integral membrane protein 	ENSMUST00000111336.3|Sdhc|ENSMUSG00000058076.6|succinate dehydrogenase complex, subunit C, integral membrane protein
mm10_v2_chr15_-_76656905_76656934	0.0518573	Zkscan1	ENSMUST00000176274.1|Cyhr1|ENSMUSG00000053929.10|cysteine and histidine rich 1
mm10_v2_chr5_+_125441546_125441614	0.0493922	Zkscan1	ENSMUST00000049040.9|Bri3bp|ENSMUSG00000037905.9|Bri3 binding protein
mm10_v2_chr3_+_94372794_94372872	0.0493328	Zkscan1	ENSMUST00000029795.3|Rorc|ENSMUSG00000028150.8|RAR-related orphan receptor gamma
mm10_v2_chr8_+_72646728_72646781	0.0480674	Zkscan1	ENSMUST00000161254.1|Nwd1|ENSMUSG00000048148.10|NACHT and WD repeat domain containing 1
mm10_v2_chr19_+_53310495_53310552	0.0472751	Zkscan1	ENSMUST00000003870.7|Mxi1|ENSMUSG00000025025.7|Max interacting protein 1
mm10_v2_chr4_+_45890303_45890340	0.0470279	Zkscan1	ENSMUST00000178561.1|E230008N13Rik|ENSMUSG00000035539.7|RIKEN cDNA E230008N13 gene
mm10_v2_chr7_-_132813799_132813905	0.0467771	Zkscan1	ENSMUST00000097998.2|Fam53b|ENSMUSG00000030956.9|family with sequence similarity 53, member B
mm10_v2_chr18_+_53245736_53245786	0.0464707	Zkscan1	ENSMUST00000025417.8|Snx24|ENSMUSG00000024535.9|sorting nexing 24
mm10_v2_chr8_+_72646679_72646725	0.0459716	Zkscan1	ENSMUST00000161386.1|Nwd1|ENSMUSG00000048148.10|NACHT and WD repeat domain containing 1 	ENSMUST00000093427.4|Nwd1|ENSMUSG00000048148.10|NACHT and WD repeat domain containing 1
mm10_v2_chr15_+_101411053_101411103	0.0458898	Zkscan1	ENSMUST00000147662.1|Krt7|ENSMUSG00000023039.10|keratin 7
mm10_v2_chr18_-_61014199_61014261	0.0434928	Zkscan1	ENSMUST00000025520.8|Slc6a7|ENSMUSG00000052026.7|solute carrier family 6 (neurotransmitter transporter, L-proline), member 7
mm10_v2_chr5_-_134639311_134639348	0.0434018	Zkscan1	ENSMUST00000036125.8|Eif4h|ENSMUSG00000040731.10|eukaryotic translation initiation factor 4H
mm10_v2_chr17_+_45506825_45506857	0.0421264	Zkscan1	ENSMUST00000024733.7|Aars2|ENSMUSG00000023938.7|alanyl-tRNA synthetase 2, mitochondrial (putative)
mm10_v2_chr4_+_74013442_74013674	0.0419715	Zkscan1	ENSMUST00000098006.2|Frmd3|ENSMUSG00000049122.11|FERM domain containing 3 	ENSMUST00000084474.5|Frmd3|ENSMUSG00000049122.11|FERM domain containing 3
mm10_v2_chrX_-_78583782_78583796	0.0407753	Zkscan1	ENSMUST00000177904.1|Prrg1|ENSMUSG00000047996.10|proline rich Gla (G-carboxyglutamic acid) 1
mm10_v2_chr9_+_62342059_62342082	0.0398496	Zkscan1	ENSMUST00000135395.1|Anp32a|ENSMUSG00000032249.8|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
mm10_v2_chr8_+_70527724_70527766	0.0377942	Zkscan1	ENSMUST00000119353.2|Fkbp8|ENSMUSG00000019428.10|FK506 binding protein 8 	ENSMUST00000075491.7|Fkbp8|ENSMUSG00000019428.10|FK506 binding protein 8
mm10_v2_chr1_-_93635479_93635632	0.0350667	Zkscan1	ENSMUST00000133769.1|Stk25|ENSMUSG00000026277.7|serine/threonine kinase 25 (yeast)
mm10_v2_chr11_+_69981127_69981214	0.0340384	Zkscan1	ENSMUST00000108593.1|Ctdnep1|ENSMUSG00000018559.10|CTD nuclear envelope phosphatase 1
mm10_v2_chr19_+_10525244_10525305	0.0334854	Zkscan1	ENSMUST00000038379.3|Cpsf7|ENSMUSG00000034820.3|cleavage and polyadenylation specific factor 7
mm10_v2_chr15_-_79164477_79164496	0.0334294	Zkscan1	ENSMUST00000040019.4|Sox10|ENSMUSG00000033006.9|SRY-box containing gene 10
mm10_v2_chrX_+_13661354_13661366	0.0297809	Zkscan1	ENSMUST00000053659.1|Gpr82|ENSMUSG00000047678.1|G protein-coupled receptor 82
mm10_v2_chr6_-_99726392_99726414	0.0294821	Zkscan1	ENSMUST00000032152.8|Prok2|ENSMUSG00000030069.9|prokineticin 2 	ENSMUST00000101120.4|Prok2|ENSMUSG00000030069.9|prokineticin 2 	ENSMUST00000008273.6|Prok2|ENSMUSG00000030069.9|prokineticin 2
mm10_v2_chr2_+_172472512_172472535	0.0286094	Zkscan1	ENSMUST00000029007.2|Fam209|ENSMUSG00000027505.2|family with sequence similarity 209
mm10_v2_chr7_-_28962223_28962247	0.0285294	Zkscan1	ENSMUST00000127210.1|Actn4|ENSMUSG00000054808.7|actinin alpha 4
mm10_v2_chr17_+_75005523_75005568	0.0284048	Zkscan1	ENSMUST00000001927.5|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1
mm10_v2_chr7_-_28962265_28962340	0.0274077	Zkscan1	ENSMUST00000068045.7|Actn4|ENSMUSG00000054808.7|actinin alpha 4
mm10_v2_chr12_+_116405397_116405466	0.0267234	Zkscan1	ENSMUST00000084828.3|Ncapg2|ENSMUSG00000042029.6|non-SMC condensin II complex, subunit G2
mm10_v2_chr12_-_111574384_111574405	0.0254186	Zkscan1	ENSMUST00000180698.1|2810029C07Rik|ENSMUSG00000096995.1|RIKEN cDNA 2810029C07 gene
mm10_v2_chr11_+_104577281_104577387	0.0252671	Zkscan1	ENSMUST00000106956.3|Myl4|ENSMUSG00000061086.6|myosin, light polypeptide 4
mm10_v2_chr16_-_17201490_17201507	0.0250218	Zkscan1	ENSMUST00000090192.5|Ube2l3|ENSMUSG00000038965.9|ubiquitin-conjugating enzyme E2L 3 	ENSMUST00000115700.1|Ube2l3|ENSMUSG00000038965.9|ubiquitin-conjugating enzyme E2L 3
mm10_v2_chr9_+_119357381_119357381	0.0244176	Zkscan1	ENSMUST00000039610.8|Xylb|ENSMUSG00000035769.8|xylulokinase homolog (H. influenzae)
mm10_v2_chr11_+_120458093_120458147	0.0221382	Zkscan1	ENSMUST00000058370.7|Ccdc137|ENSMUSG00000049957.8|coiled-coil domain containing 137 	ENSMUST00000175970.1|Ccdc137|ENSMUSG00000049957.8|coiled-coil domain containing 137 	ENSMUST00000176120.1|Ccdc137|ENSMUSG00000049957.8|coiled-coil domain containing 137
mm10_v2_chr8_+_70527829_70527846	0.0215494	Zkscan1	ENSMUST00000119698.1|Fkbp8|ENSMUSG00000019428.10|FK506 binding protein 8
mm10_v2_chr6_+_49395559_49395635	0.020991	Zkscan1	ENSMUST00000024171.7|Stk31|ENSMUSG00000023403.8|serine threonine kinase 31 	ENSMUST00000163954.1|Stk31|ENSMUSG00000023403.8|serine threonine kinase 31 	ENSMUST00000172459.1|Stk31|ENSMUSG00000023403.8|serine threonine kinase 31
mm10_v2_chr1_-_93635692_93635722	0.0199313	Zkscan1	ENSMUST00000027498.7|Stk25|ENSMUSG00000026277.7|serine/threonine kinase 25 (yeast)
mm10_v2_chr7_-_118491912_118491975	0.0183898	Zkscan1	ENSMUST00000178344.1|Itpripl2|ENSMUSG00000095115.1|inositol 1,4,5-triphosphate receptor interacting protein-like 2
mm10_v2_chr8_-_70527645_70527783	0.0168044	Zkscan1	ENSMUST00000132867.1|Kxd1|ENSMUSG00000055553.10|KxDL motif containing 1
mm10_v2_chr18_+_31609512_31609512	0.0165182	Zkscan1	ENSMUST00000164667.1|B930094E09Rik|ENSMUSG00000092124.1|RIKEN cDNA B930094E09 gene
mm10_v2_chr2_+_160880642_160880670	0.0153798	Zkscan1	ENSMUST00000109456.2|Lpin3|ENSMUSG00000027412.6|lipin 3
mm10_v2_chr11_-_78512105_78512172	0.0146192	Zkscan1	ENSMUST00000052566.7|Tmem199|ENSMUSG00000051232.7|transmembrane protein 199
mm10_v2_chr2_+_156840077_156840141	0.0126331	Zkscan1	ENSMUST00000081335.6|Tgif2|ENSMUSG00000062175.7|TGFB-induced factor homeobox 2 	ENSMUST00000073352.3|Tgif2|ENSMUSG00000062175.7|TGFB-induced factor homeobox 2
mm10_v2_chr12_+_111574491_111574542	0.0122038	Zkscan1	ENSMUST00000084953.5|Mark3|ENSMUSG00000007411.9|MAP/microtubule affinity-regulating kinase 3 	ENSMUST00000075281.6|Mark3|ENSMUSG00000007411.9|MAP/microtubule affinity-regulating kinase 3
mm10_v2_chr12_+_53248677_53248677	0.0112587	Zkscan1	ENSMUST00000101432.2|Npas3|ENSMUSG00000021010.7|neuronal PAS domain protein 3
mm10_v2_chr4_-_47057296_47057356	0.0109212	Zkscan1	ENSMUST00000107747.1|Anks6|ENSMUSG00000066191.5|ankyrin repeat and sterile alpha motif domain containing 6 	ENSMUST00000084616.2|Anks6|ENSMUSG00000066191.5|ankyrin repeat and sterile alpha motif domain containing 6
mm10_v2_chr4_-_133277730_133277804	0.0108604	Zkscan1	ENSMUST00000105907.2|Tmem222|ENSMUSG00000028857.10|transmembrane protein 222
mm10_v2_chr11_-_102697710_102697782	0.0108176	Zkscan1	ENSMUST00000164506.2|Ccdc43|ENSMUSG00000020925.10|coiled-coil domain containing 43 	ENSMUST00000092569.6|Ccdc43|ENSMUSG00000020925.10|coiled-coil domain containing 43
mm10_v2_chr13_-_56135629_56135655	0.010754	Zkscan1	ENSMUST00000016081.6|H2afy|ENSMUSG00000015937.8|H2A histone family, member Y 	ENSMUST00000045788.7|H2afy|ENSMUSG00000015937.8|H2A histone family, member Y
mm10_v2_chr17_+_33524170_33524231	0.00999206	Zkscan1	ENSMUST00000087623.6|Adamts10|ENSMUSG00000024299.10|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10
mm10_v2_chr1_+_171840557_171840570	0.00960149	Zkscan1	ENSMUST00000135386.1|Cd84|ENSMUSG00000038147.7|CD84 antigen
mm10_v2_chr5_+_72914264_72914304	0.00762163	Zkscan1	ENSMUST00000144843.1|Slain2|ENSMUSG00000036087.12|SLAIN motif family, member 2
mm10_v2_chr12_+_88360801_88360826	0.00745152	Zkscan1	ENSMUST00000166940.1|Adck1|ENSMUSG00000021044.8|aarF domain containing kinase 1
mm10_v2_chr12_+_85110833_85110866	0.00733116	Zkscan1	ENSMUST00000053811.8|Dlst|ENSMUSG00000004789.9|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)
mm10_v2_chr7_-_45061651_45061691	0.00726946	Zkscan1	ENSMUST00000007981.3|Prrg2|ENSMUSG00000007837.4|proline-rich Gla (G-carboxyglutamic acid) polypeptide 2 	ENSMUST00000107831.1|Prrg2|ENSMUSG00000007837.4|proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
mm10_v2_chr19_+_5088534_5088575	0.00723336	Zkscan1	ENSMUST00000025811.4|Yif1a|ENSMUSG00000024875.4|Yip1 interacting factor homolog A (S. cerevisiae)
mm10_v2_chr7_+_29134854_29134957	0.00687997	Zkscan1	ENSMUST00000161522.1|Rasgrp4|ENSMUSG00000030589.9|RAS guanyl releasing protein 4 	ENSMUST00000159975.1|Rasgrp4|ENSMUSG00000030589.9|RAS guanyl releasing protein 4 	ENSMUST00000032811.5|Rasgrp4|ENSMUSG00000030589.9|RAS guanyl releasing protein 4 	ENSMUST00000094617.4|Rasgrp4|ENSMUSG00000030589.9|RAS guanyl releasing protein 4
mm10_v2_chr2_-_73580288_73580353	0.00653763	Zkscan1	ENSMUST00000028515.3|Chrna1|ENSMUSG00000027107.3|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)
mm10_v2_chr1_+_90603425_90603511	0.00559747	Zkscan1	ENSMUST00000036153.5|Cops8|ENSMUSG00000034432.5|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)
mm10_v2_chr6_-_83536215_83536265	0.00501503	Zkscan1	ENSMUST00000075161.5|Actg2|ENSMUSG00000059430.8|actin, gamma 2, smooth muscle, enteric
mm10_v2_chr18_-_6490808_6490869	0.00376263	Zkscan1	ENSMUST00000028100.6|Epc1|ENSMUSG00000024240.7|enhancer of polycomb homolog 1 (Drosophila) 	ENSMUST00000050542.5|Epc1|ENSMUSG00000024240.7|enhancer of polycomb homolog 1 (Drosophila)
