mm10_v2_chr13_-_100786402_100786570	1.83263	Zkscan3	ENSMUST00000174038.1|Ccnb1|ENSMUSG00000041431.10|cyclin B1 	ENSMUST00000091295.7|Ccnb1|ENSMUSG00000041431.10|cyclin B1 	ENSMUST00000072119.8|Ccnb1|ENSMUSG00000041431.10|cyclin B1
mm10_v2_chr5_-_100572192_100572245	0.902987	Zkscan3	ENSMUST00000031264.5|Plac8|ENSMUSG00000029322.6|placenta-specific 8
mm10_v2_chr5_+_120649188_120649259	0.819634	Zkscan3	ENSMUST00000156722.1|Rasal1|ENSMUSG00000029602.5|RAS protein activator like 1 (GAP1 like)
mm10_v2_chr7_+_19518731_19518731	0.731762	Zkscan3	ENSMUST00000078908.4|Nkpd1|ENSMUSG00000060621.4|NTPase, KAP family P-loop domain containing 1
mm10_v2_chr3_+_79629074_79629115	0.603235	Zkscan3	ENSMUST00000029388.8|4930579G24Rik|ENSMUSG00000027811.8|RIKEN cDNA 4930579G24 gene
mm10_v2_chr2_+_118772766_118772780	0.559133	Zkscan3	ENSMUST00000130293.1|Phgr1|ENSMUSG00000046804.7|proline/histidine/glycine-rich 1 	ENSMUST00000061360.3|Phgr1|ENSMUSG00000046804.7|proline/histidine/glycine-rich 1
mm10_v2_chr8_+_106893616_106893696	0.505712	Zkscan3	ENSMUST00000047629.5|Cirh1a|ENSMUSG00000041438.7|cirrhosis, autosomal recessive 1A (human)
mm10_v2_chr12_-_69724830_69724885	0.45797	Zkscan3	ENSMUST00000021370.8|L2hgdh|ENSMUSG00000020988.8|L-2-hydroxyglutarate dehydrogenase
mm10_v2_chr6_+_71199827_71199888	0.420545	Zkscan3	ENSMUST00000067492.7|Fabp1|ENSMUSG00000054422.7|fatty acid binding protein 1, liver
mm10_v2_chr7_+_101896340_101896431	0.396291	Zkscan3	ENSMUST00000035395.7|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15 	ENSMUST00000106973.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15 	ENSMUST00000144207.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15
mm10_v2_chr13_-_38658991_38659038	0.377835	Zkscan3	ENSMUST00000001757.7|Eef1e1|ENSMUSG00000001707.7|eukaryotic translation elongation factor 1 epsilon 1
mm10_v2_chr1_-_65123108_65123214	0.349343	Zkscan3	ENSMUST00000050047.3|D630023F18Rik|ENSMUSG00000044816.4|RIKEN cDNA D630023F18 gene 	ENSMUST00000148020.1|D630023F18Rik|ENSMUSG00000044816.4|RIKEN cDNA D630023F18 gene
mm10_v2_chr2_+_31670714_31670741	0.341284	Zkscan3	ENSMUST00000038474.7|Exosc2|ENSMUSG00000039356.9|exosome component 2 	ENSMUST00000137156.1|Exosc2|ENSMUSG00000039356.9|exosome component 2
mm10_v2_chr19_-_10869757_10869940	0.338758	Zkscan3	ENSMUST00000120524.1|Tmem132a|ENSMUSG00000024736.8|transmembrane protein 132A 	ENSMUST00000025645.7|Tmem132a|ENSMUSG00000024736.8|transmembrane protein 132A
mm10_v2_chr10_+_75568641_75568645	0.308454	Zkscan3	ENSMUST00000131565.1|Ggt1|ENSMUSG00000006345.4|gamma-glutamyltransferase 1
mm10_v2_chr11_+_87405049_87405113	0.296135	Zkscan3	ENSMUST00000060835.5|Tex14|ENSMUSG00000010342.10|testis expressed gene 14
mm10_v2_chr10_+_75568630_75568639	0.293967	Zkscan3	ENSMUST00000145928.1|Ggt1|ENSMUSG00000006345.4|gamma-glutamyltransferase 1
mm10_v2_chr11_-_75422524_75422561	0.287327	Zkscan3	ENSMUST00000125982.1|Serpinf1|ENSMUSG00000000753.9|serine (or cysteine) peptidase inhibitor, clade F, member 1 	ENSMUST00000137103.1|Serpinf1|ENSMUSG00000000753.9|serine (or cysteine) peptidase inhibitor, clade F, member 1
mm10_v2_chr7_-_81345189_81345254	0.279355	Zkscan3	ENSMUST00000080813.4|Rps17|ENSMUSG00000061787.8|ribosomal protein S17
mm10_v2_chr10_+_75568648_75568674	0.264998	Zkscan3	ENSMUST00000134503.1|Ggt1|ENSMUSG00000006345.4|gamma-glutamyltransferase 1 	ENSMUST00000125770.1|Ggt1|ENSMUSG00000006345.4|gamma-glutamyltransferase 1 	ENSMUST00000128886.1|Ggt1|ENSMUSG00000006345.4|gamma-glutamyltransferase 1 	ENSMUST00000151212.1|Ggt1|ENSMUSG00000006345.4|gamma-glutamyltransferase 1
mm10_v2_chr13_-_104109576_104109619	0.26165	Zkscan3	ENSMUST00000109315.3|Nln|ENSMUSG00000021710.10|neurolysin (metallopeptidase M3 family)
mm10_v2_chr17_-_24150910_24150928	0.258032	Zkscan3	ENSMUST00000052462.6|Pdpk1|ENSMUSG00000024122.10|3-phosphoinositide dependent protein kinase 1
mm10_v2_chr11_-_100650693_100650749	0.254571	Zkscan3	ENSMUST00000103119.3|Zfp385c|ENSMUSG00000014198.9|zinc finger protein 385C
mm10_v2_chr11_-_88851462_88851522	0.237956	Zkscan3	ENSMUST00000107903.1|Akap1|ENSMUSG00000018428.9|A kinase (PRKA) anchor protein 1
mm10_v2_chr11_-_102218923_102218935	0.237013	Zkscan3	ENSMUST00000131254.1|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5
mm10_v2_chr17_-_34517352_34517352	0.234162	Zkscan3	ENSMUST00000075483.4|Btnl6|ENSMUSG00000058762.6|butyrophilin-like 6
mm10_v2_chr13_+_104109752_104109829	0.232169	Zkscan3	ENSMUST00000160322.1|Sgtb|ENSMUSG00000042743.7|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta 	ENSMUST00000159574.1|Sgtb|ENSMUSG00000042743.7|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
mm10_v2_chr8_+_124897877_124897901	0.219718	Zkscan3	ENSMUST00000034467.5|Sprtn|ENSMUSG00000031986.5|SprT-like N-terminal domain
mm10_v2_chr8_+_70616816_70616930	0.21776	Zkscan3	ENSMUST00000052437.3|Lrrc25|ENSMUSG00000049988.3|leucine rich repeat containing 25
mm10_v2_chr7_+_126759601_126759651	0.212348	Zkscan3	ENSMUST00000050201.4|Mapk3|ENSMUSG00000063065.7|mitogen-activated protein kinase 3 	ENSMUST00000057669.9|Mapk3|ENSMUSG00000063065.7|mitogen-activated protein kinase 3
mm10_v2_chr1_+_37997975_37998010	0.17831	Zkscan3	ENSMUST00000027252.7|Eif5b|ENSMUSG00000026083.7|eukaryotic translation initiation factor 5B
mm10_v2_chr18_+_67800101_67800147	0.175087	Zkscan3	ENSMUST00000025425.5|Cep192|ENSMUSG00000024542.8|centrosomal protein 192
mm10_v2_chr17_-_35673517_35673700	0.173192	Zkscan3	ENSMUST00000162266.1|Gtf2h4|ENSMUSG00000001524.8|general transcription factor II H, polypeptide 4 	ENSMUST00000160734.1|Gtf2h4|ENSMUSG00000001524.8|general transcription factor II H, polypeptide 4 	ENSMUST00000159852.1|Gtf2h4|ENSMUSG00000001524.8|general transcription factor II H, polypeptide 4 	ENSMUST00000160039.1|Gtf2h4|ENSMUSG00000001524.8|general transcription factor II H, polypeptide 4
mm10_v2_chr9_+_114688782_114688813	0.166482	Zkscan3	ENSMUST00000047404.6|Dync1li1|ENSMUSG00000032435.8|dynein cytoplasmic 1 light intermediate chain 1
mm10_v2_chr6_-_122856151_122856163	0.159247	Zkscan3	ENSMUST00000042081.8|C3ar1|ENSMUSG00000040552.8|complement component 3a receptor 1
mm10_v2_chr7_-_98178254_98178274	0.158539	Zkscan3	ENSMUST00000040971.7|Capn5|ENSMUSG00000035547.8|calpain 5
mm10_v2_chr17_-_34475937_34475937	0.15281	Zkscan3	ENSMUST00000065841.4|Btnl4|ENSMUSG00000058435.5|butyrophilin-like 4
mm10_v2_chr8_-_106893581_106893609	0.152576	Zkscan3	ENSMUST00000176437.1|Chtf8|ENSMUSG00000046691.7|CTF8, chromosome transmission fidelity factor 8 	ENSMUST00000177068.1|Chtf8|ENSMUSG00000046691.7|CTF8, chromosome transmission fidelity factor 8 	ENSMUST00000169312.1|Chtf8|ENSMUSG00000046691.7|CTF8, chromosome transmission fidelity factor 8 	ENSMUST00000176515.1|Chtf8|ENSMUSG00000046691.7|CTF8, chromosome transmission fidelity factor 8
mm10_v2_chr14_-_32685246_32685312	0.150559	Zkscan3	ENSMUST00000096038.3|3425401B19Rik|ENSMUSG00000071540.3|RIKEN cDNA 3425401B19 gene
mm10_v2_chr1_+_135232045_135232110	0.128567	Zkscan3	ENSMUST00000110798.3|Gm4204|ENSMUSG00000079139.3|predicted gene 4204
mm10_v2_chr8_+_33732237_33732339	0.117696	Zkscan3	ENSMUST00000171010.1|Gtf2e2|ENSMUSG00000031585.7|general transcription factor II E, polypeptide 2 (beta subunit)
mm10_v2_chr5_-_88675613_88675670	0.116724	Zkscan3	ENSMUST00000113234.1|Grsf1|ENSMUSG00000044221.8|G-rich RNA sequence binding factor 1 	ENSMUST00000153565.1|Grsf1|ENSMUSG00000044221.8|G-rich RNA sequence binding factor 1
mm10_v2_chr2_+_121171204_121171279	0.114246	Zkscan3	ENSMUST00000039541.5|Tubgcp4|ENSMUSG00000027263.6|tubulin, gamma complex associated protein 4 	ENSMUST00000110657.1|Tubgcp4|ENSMUSG00000027263.6|tubulin, gamma complex associated protein 4
mm10_v2_chr1_-_39651165_39651196	0.11229	Zkscan3	ENSMUST00000053355.4|Creg2|ENSMUSG00000050967.4|cellular repressor of E1A-stimulated genes 2
mm10_v2_chr2_+_121295437_121295486	0.109634	Zkscan3	ENSMUST00000110639.1|Map1a|ENSMUSG00000027254.7|microtubule-associated protein 1 A
mm10_v2_chr8_+_31091593_31091650	0.109435	Zkscan3	ENSMUST00000161713.1|Dusp26|ENSMUSG00000039661.8|dual specificity phosphatase 26 (putative)
mm10_v2_chr8_-_106893515_106893545	0.109018	Zkscan3	ENSMUST00000176090.1|Chtf8|ENSMUSG00000046691.7|CTF8, chromosome transmission fidelity factor 8
mm10_v2_chr13_+_104109737_104109746	0.107029	Zkscan3	ENSMUST00000044385.7|Sgtb|ENSMUSG00000042743.7|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
mm10_v2_chr11_+_116918844_116918888	0.105171	Zkscan3	ENSMUST00000103027.3|Mgat5b|ENSMUSG00000043857.10|mannoside acetylglucosaminyltransferase 5, isoenzyme B
mm10_v2_chr11_-_75422586_75422701	0.104755	Zkscan3	ENSMUST00000138661.1|Serpinf1|ENSMUSG00000000753.9|serine (or cysteine) peptidase inhibitor, clade F, member 1 	ENSMUST00000000769.7|Serpinf1|ENSMUSG00000000753.9|serine (or cysteine) peptidase inhibitor, clade F, member 1
mm10_v2_chr17_+_46110982_46111022	0.104227	Zkscan3	ENSMUST00000024763.3|Mrps18a|ENSMUSG00000023967.3|mitochondrial ribosomal protein S18A 	ENSMUST00000123646.1|Mrps18a|ENSMUSG00000023967.3|mitochondrial ribosomal protein S18A
mm10_v2_chr7_+_43609907_43609907	0.104143	Zkscan3	ENSMUST00000116324.2|Zfp819|ENSMUSG00000055102.9|zinc finger protein 819
mm10_v2_chr10_+_89744988_89745022	0.102311	Zkscan3	ENSMUST00000020112.5|Uhrf1bp1l|ENSMUSG00000019951.9|UHRF1 (ICBP90) binding protein 1-like
mm10_v2_chr1_-_92902883_92902921	0.0984123	Zkscan3	ENSMUST00000160548.1|Ankmy1|ENSMUSG00000034212.7|ankyrin repeat and MYND domain containing 1 	ENSMUST00000112998.1|Ankmy1|ENSMUSG00000034212.7|ankyrin repeat and MYND domain containing 1
mm10_v2_chr2_+_156613664_156613706	0.096463	Zkscan3	ENSMUST00000169464.2|Dlgap4|ENSMUSG00000061689.9|discs, large homolog-associated protein 4 (Drosophila) 	ENSMUST00000109567.3|Dlgap4|ENSMUSG00000061689.9|discs, large homolog-associated protein 4 (Drosophila)
mm10_v2_chr11_-_102365111_102365280	0.0952467	Zkscan3	ENSMUST00000006749.9|Slc4a1|ENSMUSG00000006574.9|solute carrier family 4 (anion exchanger), member 1
mm10_v2_chr4_+_139192899_139192941	0.0936024	Zkscan3	ENSMUST00000102508.3|Capzb|ENSMUSG00000028745.12|capping protein (actin filament) muscle Z-line, beta 	ENSMUST00000131912.1|Capzb|ENSMUSG00000028745.12|capping protein (actin filament) muscle Z-line, beta 	ENSMUST00000102507.3|Capzb|ENSMUSG00000028745.12|capping protein (actin filament) muscle Z-line, beta
mm10_v2_chr16_-_16359016_16359040	0.0933692	Zkscan3	ENSMUST00000023477.7|Dnm1l|ENSMUSG00000022789.8|dynamin 1-like 	ENSMUST00000096229.3|Dnm1l|ENSMUSG00000022789.8|dynamin 1-like 	ENSMUST00000115749.1|Dnm1l|ENSMUSG00000022789.8|dynamin 1-like
mm10_v2_chr13_+_44730726_44730838	0.09067	Zkscan3	ENSMUST00000173704.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2 	ENSMUST00000044608.7|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2 	ENSMUST00000173367.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chr8_-_13200576_13200636	0.0882213	Zkscan3	ENSMUST00000165605.2|Grtp1|ENSMUSG00000038515.9|GH regulated TBC protein 1
mm10_v2_chr17_-_35673738_35673750	0.0827007	Zkscan3	ENSMUST00000001565.8|Gtf2h4|ENSMUSG00000001524.8|general transcription factor II H, polypeptide 4
mm10_v2_chr2_+_121171155_121171198	0.0791703	Zkscan3	ENSMUST00000110658.1|Tubgcp4|ENSMUSG00000027263.6|tubulin, gamma complex associated protein 4
mm10_v2_chr6_-_43309554_43309554	0.0710433	Zkscan3	ENSMUST00000031749.9|Nobox|ENSMUSG00000029736.9|NOBOX oogenesis homeobox
mm10_v2_chr8_-_72009619_72009634	0.0706795	Zkscan3	ENSMUST00000003574.4|Cyp4f18|ENSMUSG00000003484.4|cytochrome P450, family 4, subfamily f, polypeptide 18
mm10_v2_chr18_-_77713978_77714010	0.0615489	Zkscan3	ENSMUST00000074653.4|8030462N17Rik|ENSMUSG00000047466.9|RIKEN cDNA 8030462N17 gene
mm10_v2_chr16_-_38433145_38433175	0.0586162	Zkscan3	ENSMUST00000002926.6|Pla1a|ENSMUSG00000002847.6|phospholipase A1 member A
mm10_v2_chr10_+_80629646_80629656	0.053713	Zkscan3	ENSMUST00000085435.5|Csnk1g2|ENSMUSG00000003345.9|casein kinase 1, gamma 2
mm10_v2_chr18_+_61105844_61105890	0.0460386	Zkscan3	ENSMUST00000115268.3|Csf1r|ENSMUSG00000024621.9|colony stimulating factor 1 receptor
mm10_v2_chr12_+_84641019_84641019	0.0445301	Zkscan3	ENSMUST00000166772.2|Vrtn|ENSMUSG00000071235.5|vertebrae development associated
mm10_v2_chr11_-_33578933_33578966	0.0423434	Zkscan3	ENSMUST00000020366.1|Gabrp|ENSMUSG00000020159.2|gamma-aminobutyric acid (GABA) A receptor, pi 	ENSMUST00000135350.1|Gabrp|ENSMUSG00000020159.2|gamma-aminobutyric acid (GABA) A receptor, pi
mm10_v2_chr18_-_34651703_34651741	0.0372619	Zkscan3	ENSMUST00000025228.5|Cdc23|ENSMUSG00000024370.10|CDC23 cell division cycle 23 	ENSMUST00000133181.1|Cdc23|ENSMUSG00000024370.10|CDC23 cell division cycle 23
mm10_v2_chr1_+_132298606_132298631	0.0369099	Zkscan3	ENSMUST00000046071.4|Klhdc8a|ENSMUSG00000042115.4|kelch domain containing 8A
mm10_v2_chr17_-_29519790_29519790	0.0342277	Zkscan3	ENSMUST00000168877.1|Gm17657|ENSMUSG00000091614.1|predicted gene, 17657
mm10_v2_chr1_+_160978576_160978606	0.0294356	Zkscan3	ENSMUST00000064725.5|Serpinc1|ENSMUSG00000026715.7|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
mm10_v2_chr6_-_142473075_142473115	0.0236873	Zkscan3	ENSMUST00000032371.7|Gys2|ENSMUSG00000030244.7|glycogen synthase 2
mm10_v2_chr8_-_70760889_70760953	0.0234711	Zkscan3	ENSMUST00000038626.8|Mpv17l2|ENSMUSG00000035559.8|MPV17 mitochondrial membrane protein-like 2
mm10_v2_chr1_+_131638485_131638496	0.0185626	Zkscan3	ENSMUST00000112411.1|Ctse|ENSMUSG00000004552.10|cathepsin E
mm10_v2_chr5_-_88675190_88675242	0.0179412	Zkscan3	ENSMUST00000133532.1|Grsf1|ENSMUSG00000044221.8|G-rich RNA sequence binding factor 1 	ENSMUST00000150438.1|Grsf1|ENSMUSG00000044221.8|G-rich RNA sequence binding factor 1
mm10_v2_chr13_+_73467197_73467316	0.0166057	Zkscan3	ENSMUST00000022099.8|Lpcat1|ENSMUSG00000021608.8|lysophosphatidylcholine acyltransferase 1
mm10_v2_chr19_+_45998131_45998142	0.01178	Zkscan3	ENSMUST00000181820.1|4930505N22Rik|ENSMUSG00000097690.1|RIKEN cDNA 4930505N22 gene
mm10_v2_chr1_+_131638306_131638338	0.00811829	Zkscan3	ENSMUST00000073350.6|Ctse|ENSMUSG00000004552.10|cathepsin E
mm10_v2_chr11_+_115912001_115912025	0.00726808	Zkscan3	ENSMUST00000132961.1|Smim6|ENSMUSG00000075420.6|small integral membrane protein 6
mm10_v2_chr2_+_155775333_155775392	0.00460567	Zkscan3	ENSMUST00000029141.5|Mmp24|ENSMUSG00000027612.7|matrix metallopeptidase 24
mm10_v2_chr8_-_124897685_124897757	0.00316044	Zkscan3	ENSMUST00000098312.2|Exoc8|ENSMUSG00000074030.2|exocyst complex component 8
