mm10_v2_chr4_+_17853451_17853474	0.334741	AACAGUC	ENSMUST00000029881.3|Mmp16|ENSMUSG00000028226.9|matrix metallopeptidase 16
mm10_v2_chrX_+_73639414_73639436	0.306284	AACAGUC	ENSMUST00000019701.8|Dusp9|ENSMUSG00000031383.8|dual specificity phosphatase 9
mm10_v2_chr3_+_88532314_88532396	0.266836	AACAGUC	ENSMUST00000172699.1|Mex3a|ENSMUSG00000074480.4|mex3 homolog A (C. elegans)
mm10_v2_chr18_-_47368830_47368878	0.223402	AACAGUC	ENSMUST00000019791.7|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 	ENSMUST00000115449.2|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm10_v2_chr18_+_14783238_14783259	0.205733	AACAGUC	ENSMUST00000169862.1|Taf4b|ENSMUSG00000054321.6|TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr11_-_45944910_45944960	0.205133	AACAGUC	ENSMUST00000129820.1|Lsm11|ENSMUSG00000044847.7|U7 snRNP-specific Sm-like protein LSM11
mm10_v2_chr19_-_24861828_24861855	0.169095	AACAGUC	ENSMUST00000047666.4|Pgm5|ENSMUSG00000041731.7|phosphoglucomutase 5
mm10_v2_chr5_+_76840597_76840637	0.158411	AACAGUC	ENSMUST00000120639.2|C530008M17Rik|ENSMUSG00000036377.12|RIKEN cDNA C530008M17 gene 	ENSMUST00000163347.1|C530008M17Rik|ENSMUSG00000036377.12|RIKEN cDNA C530008M17 gene 	ENSMUST00000121851.1|C530008M17Rik|ENSMUSG00000036377.12|RIKEN cDNA C530008M17 gene
mm10_v2_chr7_-_78578308_78578408	0.155406	AACAGUC	ENSMUST00000039431.7|Ntrk3|ENSMUSG00000059146.6|neurotrophic tyrosine kinase, receptor, type 3
mm10_v2_chr5_+_98854434_98854466	0.155237	AACAGUC	ENSMUST00000031278.4|Bmp3|ENSMUSG00000029335.4|bone morphogenetic protein 3
mm10_v2_chr13_-_28953690_28953713	0.15136	AACAGUC	ENSMUST00000067230.5|Sox4|ENSMUSG00000076431.4|SRY-box containing gene 4
mm10_v2_chr2_-_65567465_65567495	0.147031	AACAGUC	ENSMUST00000066432.5|Scn3a|ENSMUSG00000057182.8|sodium channel, voltage-gated, type III, alpha
mm10_v2_chr10_-_121311034_121311189	0.145587	AACAGUC	ENSMUST00000064107.5|Tbc1d30|ENSMUSG00000052302.5|TBC1 domain family, member 30
mm10_v2_chr13_-_63565520_63565520	0.143629	AACAGUC	ENSMUST00000021921.5|Ptch1|ENSMUSG00000021466.6|patched homolog 1
mm10_v2_chr6_+_14901344_14901364	0.136255	AACAGUC	ENSMUST00000115477.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr1_-_178337774_178337797	0.132697	AACAGUC	ENSMUST00000037748.7|Hnrnpu|ENSMUSG00000039630.8|heterogeneous nuclear ribonucleoprotein U
mm10_v2_chr8_+_13339656_13339674	0.129729	AACAGUC	ENSMUST00000170909.1|Tfdp1|ENSMUSG00000038482.10|transcription factor Dp 1
mm10_v2_chr19_+_36926071_36926177	0.123995	AACAGUC	ENSMUST00000099494.3|Btaf1|ENSMUSG00000040565.7|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, (Mot1 homolog, S. cerevisiae)
mm10_v2_chr15_-_53902472_53902530	0.119725	AACAGUC	ENSMUST00000078673.6|Samd12|ENSMUSG00000058656.6|sterile alpha motif domain containing 12
mm10_v2_chr11_-_100472725_100472759	0.117768	AACAGUC	ENSMUST00000056665.3|Klhl11|ENSMUSG00000048732.5|kelch-like 11
mm10_v2_chr10_-_40302186_40302206	0.115894	AACAGUC	ENSMUST00000099945.4|Amd1|ENSMUSG00000075232.4|S-adenosylmethionine decarboxylase 1
mm10_v2_chr12_-_84218835_84218890	0.104283	AACAGUC	ENSMUST00000046266.6|Elmsan1|ENSMUSG00000042507.8|ELM2 and Myb/SANT-like domain containing 1
mm10_v2_chr14_-_103346765_103346841	0.103643	AACAGUC	ENSMUST00000159855.1|Mycbp2|ENSMUSG00000033004.8|MYC binding protein 2
mm10_v2_chr9_+_32116040_32116136	0.0982537	AACAGUC	ENSMUST00000174641.1|Arhgap32|ENSMUSG00000041444.8|Rho GTPase activating protein 32
mm10_v2_chr4_+_108460000_108460030	0.092717	AACAGUC	ENSMUST00000097925.2|Zcchc11|ENSMUSG00000034610.8|zinc finger, CCHC domain containing 11
mm10_v2_chr4_+_13743424_13743478	0.0918287	AACAGUC	ENSMUST00000006761.3|Runx1t1|ENSMUSG00000006586.9|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm10_v2_chr10_-_118868903_118868903	0.0895628	AACAGUC	ENSMUST00000004281.8|Dyrk2|ENSMUSG00000028630.8|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
mm10_v2_chr8_-_73353477_73353551	0.0880889	AACAGUC	ENSMUST00000119826.1|Large|ENSMUSG00000004383.11|like-glycosyltransferase
mm10_v2_chr2_+_65620829_65620857	0.0880596	AACAGUC	ENSMUST00000028377.7|Scn2a1|ENSMUSG00000075318.6|sodium channel, voltage-gated, type II, alpha 1
mm10_v2_chr16_+_11322876_11322911	0.0861029	AACAGUC	ENSMUST00000180792.1|Snx29|ENSMUSG00000071669.8|sorting nexin 29
mm10_v2_chr16_+_42907563_42907684	0.0847994	AACAGUC	ENSMUST00000151244.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000114694.2|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr13_-_105054895_105054930	0.0843896	AACAGUC	ENSMUST00000063551.5|Rgs7bp|ENSMUSG00000021719.8|regulator of G-protein signalling 7 binding protein
mm10_v2_chr2_-_103797617_103797662	0.0832449	AACAGUC	ENSMUST00000028607.6|Caprin1|ENSMUSG00000027184.8|cell cycle associated protein 1
mm10_v2_chr6_+_40110251_40110251	0.0809909	AACAGUC	ENSMUST00000061740.7|Tmem178b|ENSMUSG00000057716.6|transmembrane protein 178B
mm10_v2_chr1_-_193035651_193035728	0.0806917	AACAGUC	ENSMUST00000016344.7|Syt14|ENSMUSG00000016200.8|synaptotagmin XIV
mm10_v2_chr14_-_46822232_46822266	0.0795824	AACAGUC	ENSMUST00000111817.1|Gmfb|ENSMUSG00000062014.6|glia maturation factor, beta 	ENSMUST00000079314.5|Gmfb|ENSMUSG00000062014.6|glia maturation factor, beta
mm10_v2_chr12_-_102878406_102878449	0.0795736	AACAGUC	ENSMUST00000045652.6|Btbd7|ENSMUSG00000041702.6|BTB (POZ) domain containing 7
mm10_v2_chr15_+_81586206_81586250	0.0773231	AACAGUC	ENSMUST00000068387.4|Ep300|ENSMUSG00000055024.6|E1A binding protein p300
mm10_v2_chr12_-_71136611_71136701	0.0757061	AACAGUC	ENSMUST00000021486.8|Timm9|ENSMUSG00000021079.9|translocase of inner mitochondrial membrane 9 	ENSMUST00000166120.1|Timm9|ENSMUSG00000021079.9|translocase of inner mitochondrial membrane 9
mm10_v2_chr19_-_10240689_10240751	0.0746158	AACAGUC	ENSMUST00000088013.5|Myrf|ENSMUSG00000036098.9|myelin regulatory factor
mm10_v2_chr3_+_137864573_137864613	0.0739974	AACAGUC	ENSMUST00000174561.1|H2afz|ENSMUSG00000037894.7|H2A histone family, member Z 	ENSMUST00000173790.1|H2afz|ENSMUSG00000037894.7|H2A histone family, member Z
mm10_v2_chr11_-_116027961_116027978	0.0736988	AACAGUC	ENSMUST00000106454.1|H3f3b|ENSMUSG00000016559.8|H3 histone, family 3B
mm10_v2_chr17_-_46282991_46283026	0.0736881	AACAGUC	ENSMUST00000180283.1|Tjap1|ENSMUSG00000012296.9|tight junction associated protein 1 	ENSMUST00000012440.6|Tjap1|ENSMUSG00000012296.9|tight junction associated protein 1 	ENSMUST00000164342.2|Tjap1|ENSMUSG00000012296.9|tight junction associated protein 1
mm10_v2_chr2_-_33431324_33431324	0.0674827	AACAGUC	ENSMUST00000113158.1|Zbtb34|ENSMUSG00000068966.4|zinc finger and BTB domain containing 34
mm10_v2_chr2_+_121955964_121956001	0.067125	AACAGUC	ENSMUST00000036647.6|Ctdspl2|ENSMUSG00000033411.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm10_v2_chr17_-_45549655_45549677	0.0665528	AACAGUC	ENSMUST00000180252.1|Tmem151b|ENSMUSG00000096847.1|transmembrane protein 151B
mm10_v2_chr17_-_81649607_81649607	0.0649145	AACAGUC	ENSMUST00000163680.2|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1 	ENSMUST00000086538.3|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1 	ENSMUST00000163123.1|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1
mm10_v2_chr15_-_73184840_73184971	0.064848	AACAGUC	ENSMUST00000044113.10|Ago2|ENSMUSG00000036698.10|argonaute RISC catalytic subunit 2
mm10_v2_chr15_+_101224207_101224231	0.0627222	AACAGUC	ENSMUST00000000543.4|Grasp|ENSMUSG00000000531.4|GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein
mm10_v2_chr7_+_63444741_63444762	0.0603951	AACAGUC	ENSMUST00000058476.7|Otud7a|ENSMUSG00000033510.8|OTU domain containing 7A
mm10_v2_chr19_+_21778325_21778363	0.0602444	AACAGUC	ENSMUST00000096194.2|Tmem2|ENSMUSG00000024754.6|transmembrane protein 2 	ENSMUST00000025663.6|Tmem2|ENSMUSG00000024754.6|transmembrane protein 2
mm10_v2_chr4_+_48585135_48585187	0.0591751	AACAGUC	ENSMUST00000030032.6|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chr12_+_117516479_117516534	0.0588877	AACAGUC	ENSMUST00000109691.2|Rapgef5|ENSMUSG00000041992.8|Rap guanine nucleotide exchange factor (GEF) 5
mm10_v2_chr14_-_98169542_98169595	0.0566653	AACAGUC	ENSMUST00000069334.7|Dach1|ENSMUSG00000055639.10|dachshund 1 (Drosophila) 	ENSMUST00000071533.6|Dach1|ENSMUSG00000055639.10|dachshund 1 (Drosophila)
mm10_v2_chr10_-_45470201_45470260	0.0555772	AACAGUC	ENSMUST00000079390.6|Lin28b|ENSMUSG00000063804.7|lin-28 homolog B (C. elegans)
mm10_v2_chr15_-_102516806_102517064	0.0505971	AACAGUC	ENSMUST00000169162.1|Map3k12|ENSMUSG00000023050.2|mitogen-activated protein kinase kinase kinase 12 	ENSMUST00000023812.2|Map3k12|ENSMUSG00000023050.2|mitogen-activated protein kinase kinase kinase 12 	ENSMUST00000165174.1|Map3k12|ENSMUSG00000023050.2|mitogen-activated protein kinase kinase kinase 12 	ENSMUST00000169367.1|Map3k12|ENSMUSG00000023050.2|mitogen-activated protein kinase kinase kinase 12 	ENSMUST00000169377.1|Map3k12|ENSMUSG00000023050.2|mitogen-activated protein kinase kinase kinase 12
mm10_v2_chr10_-_123196916_123196961	0.0505807	AACAGUC	ENSMUST00000020334.7|Usp15|ENSMUSG00000020124.9|ubiquitin specific peptidase 15
mm10_v2_chr15_+_58415456_58415512	0.05016	AACAGUC	ENSMUST00000037270.3|D15Ertd621e|ENSMUSG00000037119.3|DNA segment, Chr 15, ERATO Doi 621, expressed
mm10_v2_chr6_+_146888481_146888589	0.049851	AACAGUC	ENSMUST00000016631.7|Ppfibp1|ENSMUSG00000016487.9|PTPRF interacting protein, binding protein 1 (liprin beta 1) 	ENSMUST00000111623.2|Ppfibp1|ENSMUSG00000016487.9|PTPRF interacting protein, binding protein 1 (liprin beta 1)
mm10_v2_chr18_+_35598607_35598653	0.048712	AACAGUC	ENSMUST00000041314.8|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2 	ENSMUST00000115737.1|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2 	ENSMUST00000115736.1|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2 	ENSMUST00000115735.1|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2
mm10_v2_chr1_+_91053422_91053520	0.0484668	AACAGUC	ENSMUST00000097650.3|Lrrfip1|ENSMUSG00000026305.9|leucine rich repeat (in FLII) interacting protein 1 	ENSMUST00000068167.6|Lrrfip1|ENSMUSG00000026305.9|leucine rich repeat (in FLII) interacting protein 1 	ENSMUST00000097649.3|Lrrfip1|ENSMUSG00000026305.9|leucine rich repeat (in FLII) interacting protein 1
mm10_v2_chr5_+_147430407_147430545	0.0483636	AACAGUC	ENSMUST00000176600.1|Pan3|ENSMUSG00000029647.9|PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae)
mm10_v2_chr2_-_51149100_51149115	0.0481917	AACAGUC	ENSMUST00000154545.1|Rnd3|ENSMUSG00000017144.2|Rho family GTPase 3 	ENSMUST00000017288.2|Rnd3|ENSMUSG00000017144.2|Rho family GTPase 3
mm10_v2_chr16_+_7069825_7069846	0.0472105	AACAGUC	ENSMUST00000056416.7|Rbfox1|ENSMUSG00000008658.9|RNA binding protein, fox-1 homolog (C. elegans) 1
mm10_v2_chr18_-_36515798_36515812	0.0460375	AACAGUC	ENSMUST00000025363.5|Hbegf|ENSMUSG00000024486.5|heparin-binding EGF-like growth factor
mm10_v2_chr11_+_77216180_77216287	0.0459346	AACAGUC	ENSMUST00000037912.5|Ssh2|ENSMUSG00000037926.9|slingshot homolog 2 (Drosophila) 	ENSMUST00000156488.1|Ssh2|ENSMUSG00000037926.9|slingshot homolog 2 (Drosophila)
mm10_v2_chr15_+_96287518_96287604	0.0445853	AACAGUC	ENSMUST00000134985.2|Arid2|ENSMUSG00000033237.12|AT rich interactive domain 2 (ARID, RFX-like) 	ENSMUST00000096250.4|Arid2|ENSMUSG00000033237.12|AT rich interactive domain 2 (ARID, RFX-like)
mm10_v2_chr18_+_10725530_10725564	0.0442483	AACAGUC	ENSMUST00000052838.4|Mib1|ENSMUSG00000024294.7|mindbomb homolog 1 (Drosophila)
mm10_v2_chr5_+_108461222_108461241	0.0433591	AACAGUC	ENSMUST00000046975.5|Pcgf3|ENSMUSG00000033623.7|polycomb group ring finger 3 	ENSMUST00000112597.1|Pcgf3|ENSMUSG00000033623.7|polycomb group ring finger 3
mm10_v2_chr3_-_110142996_110143010	0.0432762	AACAGUC	ENSMUST00000156177.2|Ntng1|ENSMUSG00000059857.9|netrin G1
mm10_v2_chr1_-_64121456_64121491	0.0431866	AACAGUC	ENSMUST00000142009.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous) 	ENSMUST00000114086.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous)
mm10_v2_chr17_-_80480435_80480462	0.0416145	AACAGUC	ENSMUST00000068714.5|Sos1|ENSMUSG00000024241.6|son of sevenless homolog 1 (Drosophila)
mm10_v2_chr12_+_40446050_40446099	0.0408179	AACAGUC	ENSMUST00000037488.6|Dock4|ENSMUSG00000035954.9|dedicator of cytokinesis 4
mm10_v2_chr17_-_10840285_10840311	0.0386483	AACAGUC	ENSMUST00000041463.6|Pacrg|ENSMUSG00000037196.6|PARK2 co-regulated
mm10_v2_chr11_+_50376982_50377004	0.0378638	AACAGUC	ENSMUST00000109142.1|Hnrnph1|ENSMUSG00000007850.10|heterogeneous nuclear ribonucleoprotein H1
mm10_v2_chr2_-_20968881_20968957	0.0373178	AACAGUC	ENSMUST00000114594.1|Arhgap21|ENSMUSG00000036591.9|Rho GTPase activating protein 21
mm10_v2_chr11_-_98149551_98149621	0.0370328	AACAGUC	ENSMUST00000103143.3|Fbxl20|ENSMUSG00000020883.12|F-box and leucine-rich repeat protein 20
mm10_v2_chr14_-_45318556_45318579	0.0361698	AACAGUC	ENSMUST00000022378.7|Ero1l|ENSMUSG00000021831.8|ERO1-like (S. cerevisiae)
mm10_v2_chr5_-_32854185_32854256	0.0345433	AACAGUC	ENSMUST00000130134.2|Prr14l|ENSMUSG00000054280.8|proline rich 14-like 	ENSMUST00000120129.2|Prr14l|ENSMUSG00000054280.8|proline rich 14-like
mm10_v2_chr19_+_44989073_44989101	0.033904	AACAGUC	ENSMUST00000026225.8|Sema4g|ENSMUSG00000025207.9|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
mm10_v2_chr9_+_14276301_14276347	0.0333969	AACAGUC	ENSMUST00000034507.7|Sesn3|ENSMUSG00000032009.7|sestrin 3
mm10_v2_chr4_-_133753611_133753666	0.0333188	AACAGUC	ENSMUST00000145664.2|Arid1a|ENSMUSG00000007880.10|AT rich interactive domain 1A (SWI-like) 	ENSMUST00000105897.3|Arid1a|ENSMUSG00000007880.10|AT rich interactive domain 1A (SWI-like)
mm10_v2_chr4_+_127021311_127021339	0.0331596	AACAGUC	ENSMUST00000030623.7|Sfpq|ENSMUSG00000028820.7|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
mm10_v2_chr3_+_61364507_61364633	0.0330881	AACAGUC	ENSMUST00000049064.2|Rap2b|ENSMUSG00000036894.2|RAP2B, member of RAS oncogene family
mm10_v2_chr7_+_130577334_130577484	0.0327815	AACAGUC	ENSMUST00000059145.7|Tacc2|ENSMUSG00000030852.9|transforming, acidic coiled-coil containing protein 2 	ENSMUST00000084513.4|Tacc2|ENSMUSG00000030852.9|transforming, acidic coiled-coil containing protein 2
mm10_v2_chr12_-_54862783_54862921	0.0323588	AACAGUC	ENSMUST00000078124.7|Cfl2|ENSMUSG00000062929.7|cofilin 2, muscle
mm10_v2_chr13_-_107022027_107022138	0.0308951	AACAGUC	ENSMUST00000117539.1|Kif2a|ENSMUSG00000021693.13|kinesin family member 2A 	ENSMUST00000122233.1|Kif2a|ENSMUSG00000021693.13|kinesin family member 2A 	ENSMUST00000022204.9|Kif2a|ENSMUSG00000021693.13|kinesin family member 2A 	ENSMUST00000159772.1|Kif2a|ENSMUSG00000021693.13|kinesin family member 2A
mm10_v2_chr5_-_135934590_135934613	0.0307534	AACAGUC	ENSMUST00000055808.5|Ywhag|ENSMUSG00000051391.8|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm10_v2_chr3_-_119783262_119783388	0.0306914	AACAGUC	ENSMUST00000029780.7|Ptbp2|ENSMUSG00000028134.7|polypyrimidine tract binding protein 2
mm10_v2_chr1_+_9798123_9798216	0.0294597	AACAGUC	ENSMUST00000168907.1|Sgk3|ENSMUSG00000025915.8|serum/glucocorticoid regulated kinase 3 	ENSMUST00000166384.1|Sgk3|ENSMUSG00000025915.8|serum/glucocorticoid regulated kinase 3
mm10_v2_chr3_+_89520152_89520175	0.0285045	AACAGUC	ENSMUST00000000811.7|Kcnn3|ENSMUSG00000000794.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
mm10_v2_chr10_-_40883073_40883143	0.0276913	AACAGUC	ENSMUST00000044166.7|Cdc40|ENSMUSG00000038446.7|cell division cycle 40
mm10_v2_chr16_-_50432340_50432409	0.0274433	AACAGUC	ENSMUST00000066037.6|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089399.4|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089404.3|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000114477.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000138166.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila)
mm10_v2_chr4_+_101496648_101496722	0.027401	AACAGUC	ENSMUST00000106930.1|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6 	ENSMUST00000154120.1|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6
mm10_v2_chr3_+_96104498_96104571	0.0272437	AACAGUC	ENSMUST00000132980.1|Otud7b|ENSMUSG00000038495.8|OTU domain containing 7B 	ENSMUST00000138206.1|Otud7b|ENSMUSG00000038495.8|OTU domain containing 7B 	ENSMUST00000090785.2|Otud7b|ENSMUSG00000038495.8|OTU domain containing 7B 	ENSMUST00000035519.5|Otud7b|ENSMUSG00000038495.8|OTU domain containing 7B
mm10_v2_chr13_-_85288999_85289058	0.0271969	AACAGUC	ENSMUST00000109552.2|Rasa1|ENSMUSG00000021549.7|RAS p21 protein activator 1
mm10_v2_chr12_+_3426857_3426931	0.0269167	AACAGUC	ENSMUST00000111215.3|Asxl2|ENSMUSG00000037486.11|additional sex combs like 2 (Drosophila) 	ENSMUST00000092003.5|Asxl2|ENSMUSG00000037486.11|additional sex combs like 2 (Drosophila) 	ENSMUST00000144247.2|Asxl2|ENSMUSG00000037486.11|additional sex combs like 2 (Drosophila) 	ENSMUST00000153102.2|Asxl2|ENSMUSG00000037486.11|additional sex combs like 2 (Drosophila)
mm10_v2_chr4_+_83525540_83525616	0.0257049	AACAGUC	ENSMUST00000053414.6|Ccdc171|ENSMUSG00000052407.10|coiled-coil domain containing 171 	ENSMUST00000126429.1|Ccdc171|ENSMUSG00000052407.10|coiled-coil domain containing 171
mm10_v2_chr9_-_67559703_67559703	0.0255692	AACAGUC	ENSMUST00000040025.7|Tln2|ENSMUSG00000052698.8|talin 2
mm10_v2_chr4_+_108619925_108619994	0.0252856	AACAGUC	ENSMUST00000030320.6|Cc2d1b|ENSMUSG00000028582.8|coiled-coil and C2 domain containing 1B
mm10_v2_chr1_-_105356658_105356714	0.0239169	AACAGUC	ENSMUST00000058688.5|Rnf152|ENSMUSG00000047496.5|ring finger protein 152 	ENSMUST00000172299.1|Rnf152|ENSMUSG00000047496.5|ring finger protein 152
mm10_v2_chr3_-_19311269_19311322	0.0224832	AACAGUC	ENSMUST00000099195.3|Pde7a|ENSMUSG00000069094.6|phosphodiesterase 7A
mm10_v2_chr8_+_125012986_125013006	0.0220898	AACAGUC	ENSMUST00000075896.6|Tsnax|ENSMUSG00000056820.6|translin-associated factor X
mm10_v2_chr9_+_62341329_62341390	0.0220354	AACAGUC	ENSMUST00000085519.6|Anp32a|ENSMUSG00000032249.8|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
mm10_v2_chr4_-_34882919_34882964	0.0219801	AACAGUC	ENSMUST00000098163.2|Zfp292|ENSMUSG00000039967.8|zinc finger protein 292 	ENSMUST00000047950.5|Zfp292|ENSMUSG00000039967.8|zinc finger protein 292
mm10_v2_chr16_-_46010212_46010223	0.0215894	AACAGUC	ENSMUST00000130481.1|Plcxd2|ENSMUSG00000087141.1|phosphatidylinositol-specific phospholipase C, X domain containing 2
mm10_v2_chr12_+_3807017_3807063	0.0213579	AACAGUC	ENSMUST00000020991.8|Dnmt3a|ENSMUSG00000020661.9|DNA methyltransferase 3A 	ENSMUST00000172509.1|Dnmt3a|ENSMUSG00000020661.9|DNA methyltransferase 3A
mm10_v2_chr7_-_127021205_127021216	0.021167	AACAGUC	ENSMUST00000159916.1|Prrt2|ENSMUSG00000045114.7|proline-rich transmembrane protein 2
mm10_v2_chr5_+_108065742_108065767	0.0206743	AACAGUC	ENSMUST00000081567.4|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2 	ENSMUST00000170319.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2 	ENSMUST00000112626.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2
mm10_v2_chr6_+_120364094_120364163	0.0205119	AACAGUC	ENSMUST00000100996.3|Kdm5a|ENSMUSG00000030180.9|lysine (K)-specific demethylase 5A 	ENSMUST00000005108.7|Kdm5a|ENSMUSG00000030180.9|lysine (K)-specific demethylase 5A
mm10_v2_chr1_-_189343704_189343832	0.0200437	AACAGUC	ENSMUST00000180044.1|Kcnk2|ENSMUSG00000037624.9|potassium channel, subfamily K, member 2 	ENSMUST00000110920.1|Kcnk2|ENSMUSG00000037624.9|potassium channel, subfamily K, member 2
mm10_v2_chr13_-_45964964_45965001	0.0200338	AACAGUC	ENSMUST00000180110.1|Atxn1|ENSMUSG00000046876.9|ataxin 1 	ENSMUST00000091628.3|Atxn1|ENSMUSG00000046876.9|ataxin 1 	ENSMUST00000167708.2|Atxn1|ENSMUSG00000046876.9|ataxin 1
mm10_v2_chr1_-_134079114_134079120	0.0200021	AACAGUC	ENSMUST00000020692.6|Btg2|ENSMUSG00000020423.6|B cell translocation gene 2, anti-proliferative
mm10_v2_chrX_-_95166307_95166539	0.019918	AACAGUC	ENSMUST00000113873.2|Arhgef9|ENSMUSG00000025656.11|CDC42 guanine nucleotide exchange factor (GEF) 9 	ENSMUST00000113876.2|Arhgef9|ENSMUSG00000025656.11|CDC42 guanine nucleotide exchange factor (GEF) 9 	ENSMUST00000113885.1|Arhgef9|ENSMUSG00000025656.11|CDC42 guanine nucleotide exchange factor (GEF) 9 	ENSMUST00000113883.1|Arhgef9|ENSMUSG00000025656.11|CDC42 guanine nucleotide exchange factor (GEF) 9 	ENSMUST00000182001.1|Arhgef9|ENSMUSG00000025656.11|CDC42 guanine nucleotide exchange factor (GEF) 9 	ENSMUST00000113882.1|Arhgef9|ENSMUSG00000025656.11|CDC42 guanine nucleotide exchange factor (GEF) 9 	ENSMUST00000113878.1|Arhgef9|ENSMUSG00000025656.11|CDC42 guanine nucleotide exchange factor (GEF) 9 	ENSMUST00000182562.1|Arhgef9|ENSMUSG00000025656.11|CDC42 guanine nucleotide exchange factor (GEF) 9
mm10_v2_chr11_+_107479478_107479544	0.0199151	AACAGUC	ENSMUST00000021063.6|Psmd12|ENSMUSG00000020720.7|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 	ENSMUST00000106752.3|Psmd12|ENSMUSG00000020720.7|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12
mm10_v2_chr11_-_61579637_61579707	0.0195941	AACAGUC	ENSMUST00000147501.1|Epn2|ENSMUSG00000001036.11|epsin 2 	ENSMUST00000146455.1|Epn2|ENSMUSG00000001036.11|epsin 2 	ENSMUST00000108711.1|Epn2|ENSMUSG00000001036.11|epsin 2 	ENSMUST00000108712.1|Epn2|ENSMUSG00000001036.11|epsin 2 	ENSMUST00000001063.8|Epn2|ENSMUSG00000001036.11|epsin 2 	ENSMUST00000108713.1|Epn2|ENSMUSG00000001036.11|epsin 2 	ENSMUST00000179936.1|Epn2|ENSMUSG00000001036.11|epsin 2 	ENSMUST00000178202.1|Epn2|ENSMUSG00000001036.11|epsin 2
mm10_v2_chr18_+_82910863_82910885	0.01944	AACAGUC	ENSMUST00000171238.1|Zfp516|ENSMUSG00000058881.6|zinc finger protein 516
mm10_v2_chr19_-_29805989_29806009	0.019415	AACAGUC	ENSMUST00000177155.1|9930021J03Rik|ENSMUSG00000046138.8|RIKEN cDNA 9930021J03 gene 	ENSMUST00000059484.7|9930021J03Rik|ENSMUSG00000046138.8|RIKEN cDNA 9930021J03 gene
mm10_v2_chrX_-_168123311_168123334	0.0194103	AACAGUC	ENSMUST00000112149.1|Frmpd4|ENSMUSG00000049176.8|FERM and PDZ domain containing 4
mm10_v2_chr9_+_52047150_52047163	0.0191169	AACAGUC	ENSMUST00000163153.1|Rdx|ENSMUSG00000032050.10|radixin
mm10_v2_chr1_+_152954966_152955101	0.0185888	AACAGUC	ENSMUST00000043313.8|Nmnat2|ENSMUSG00000042751.8|nicotinamide nucleotide adenylyltransferase 2
mm10_v2_chr11_-_87987528_87987537	0.0185186	AACAGUC	ENSMUST00000020775.2|Dynll2|ENSMUSG00000020483.8|dynein light chain LC8-type 2
mm10_v2_chr10_-_42276744_42276763	0.0180135	AACAGUC	ENSMUST00000105502.1|Foxo3|ENSMUSG00000048756.5|forkhead box O3 	ENSMUST00000105501.1|Foxo3|ENSMUSG00000048756.5|forkhead box O3
mm10_v2_chr2_-_66410064_66410134	0.0170601	AACAGUC	ENSMUST00000112366.1|Scn1a|ENSMUSG00000064329.7|sodium channel, voltage-gated, type I, alpha
mm10_v2_chr11_+_3330401_3330541	0.0166664	AACAGUC	ENSMUST00000045153.4|Pik3ip1|ENSMUSG00000034614.8|phosphoinositide-3-kinase interacting protein 1
mm10_v2_chr8_-_85555261_85555315	0.0166009	AACAGUC	ENSMUST00000034138.5|Dnaja2|ENSMUSG00000031701.5|DnaJ (Hsp40) homolog, subfamily A, member 2
mm10_v2_chr7_+_112679314_112679325	0.0164095	AACAGUC	ENSMUST00000084705.5|Tead1|ENSMUSG00000055320.10|TEA domain family member 1 	ENSMUST00000059768.10|Tead1|ENSMUSG00000055320.10|TEA domain family member 1
mm10_v2_chr10_+_40349265_40349387	0.0161543	AACAGUC	ENSMUST00000044672.4|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19 	ENSMUST00000095743.2|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19
mm10_v2_chr7_-_116038734_116038750	0.0157403	AACAGUC	ENSMUST00000166877.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr11_+_75679259_75679327	0.0157277	AACAGUC	ENSMUST00000017920.7|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian) 	ENSMUST00000108426.1|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian) 	ENSMUST00000108425.1|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian) 	ENSMUST00000093115.3|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian)
mm10_v2_chr2_-_57114970_57115038	0.0150663	AACAGUC	ENSMUST00000028166.2|Nr4a2|ENSMUSG00000026826.7|nuclear receptor subfamily 4, group A, member 2
mm10_v2_chr2_-_130638094_130638113	0.0146255	AACAGUC	ENSMUST00000089561.3|Lzts3|ENSMUSG00000037703.8|leucine zipper, putative tumor suppressor family member 3 	ENSMUST00000110260.1|Lzts3|ENSMUSG00000037703.8|leucine zipper, putative tumor suppressor family member 3
mm10_v2_chr2_+_31572701_31572725	0.0137886	AACAGUC	ENSMUST00000055244.6|Fubp3|ENSMUSG00000026843.9|far upstream element (FUSE) binding protein 3
mm10_v2_chr16_+_16983382_16983416	0.0130508	AACAGUC	ENSMUST00000069107.7|Mapk1|ENSMUSG00000063358.9|mitogen-activated protein kinase 1 	ENSMUST00000023462.6|Mapk1|ENSMUSG00000063358.9|mitogen-activated protein kinase 1
mm10_v2_chr2_+_133552159_133552237	0.0124524	AACAGUC	ENSMUST00000028836.6|Bmp2|ENSMUSG00000027358.6|bone morphogenetic protein 2
mm10_v2_chr14_-_46788267_46788411	0.0115087	AACAGUC	ENSMUST00000015903.4|Cnih1|ENSMUSG00000015759.4|cornichon homolog 1 (Drosophila)
mm10_v2_chr18_+_35562158_35562174	0.0099533	AACAGUC	ENSMUST00000166793.1|Matr3|ENSMUSG00000037236.8|matrin 3
mm10_v2_chr14_-_20388822_20388912	0.00938326	AACAGUC	ENSMUST00000022345.6|Dnajc9|ENSMUSG00000021811.6|DnaJ (Hsp40) homolog, subfamily C, member 9
mm10_v2_chr1_-_131097535_131097576	0.00838335	AACAGUC	ENSMUST00000016672.4|Mapkapk2|ENSMUSG00000016528.4|MAP kinase-activated protein kinase 2
mm10_v2_chr1_-_51915968_51916071	0.00798566	AACAGUC	ENSMUST00000046390.7|Myo1b|ENSMUSG00000018417.8|myosin IB
mm10_v2_chr10_-_117376955_117376978	0.00769667	AACAGUC	ENSMUST00000069168.6|Cpsf6|ENSMUSG00000055531.6|cleavage and polyadenylation specific factor 6 	ENSMUST00000176686.1|Cpsf6|ENSMUSG00000055531.6|cleavage and polyadenylation specific factor 6
mm10_v2_chr9_-_108190352_108190420	0.00695856	AACAGUC	ENSMUST00000035208.7|Bsn|ENSMUSG00000032589.8|bassoon
mm10_v2_chr11_+_88047693_88047727	0.00688211	AACAGUC	ENSMUST00000079866.4|Srsf1|ENSMUSG00000018379.11|serine/arginine-rich splicing factor 1
mm10_v2_chr5_-_135394499_135394558	0.00680094	AACAGUC	ENSMUST00000065638.4|Pom121|ENSMUSG00000053293.5|nuclear pore membrane protein 121 	ENSMUST00000111171.2|Pom121|ENSMUSG00000053293.5|nuclear pore membrane protein 121
mm10_v2_chr15_+_100615620_100615677	0.00678539	AACAGUC	ENSMUST00000000356.8|Dazap2|ENSMUSG00000000346.8|DAZ associated protein 2
mm10_v2_chr9_+_70542872_70542920	0.00674549	AACAGUC	ENSMUST00000049263.7|Sltm|ENSMUSG00000032212.9|SAFB-like, transcription modulator
mm10_v2_chr5_-_140830430_140830453	0.00637688	AACAGUC	ENSMUST00000000153.4|Gna12|ENSMUSG00000000149.6|guanine nucleotide binding protein, alpha 12
mm10_v2_chr6_-_143947092_143947111	0.00574684	AACAGUC	ENSMUST00000144289.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5 	ENSMUST00000111748.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr9_+_118606687_118606751	0.00558621	AACAGUC	ENSMUST00000044165.7|Itga9|ENSMUSG00000039115.7|integrin alpha 9
mm10_v2_chr3_-_108911687_108911746	0.00553492	AACAGUC	ENSMUST00000029480.8|Prpf38b|ENSMUSG00000027881.8|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
mm10_v2_chr12_-_76822510_76822558	0.00517642	AACAGUC	ENSMUST00000021459.7|Rab15|ENSMUSG00000021062.9|RAB15, member RAS oncogene family
mm10_v2_chr5_+_115011111_115011208	0.00504157	AACAGUC	ENSMUST00000031530.5|Sppl3|ENSMUSG00000029550.8|signal peptide peptidase 3
mm10_v2_chr4_+_155491353_155491411	0.00492297	AACAGUC	ENSMUST00000165335.1|Gnb1|ENSMUSG00000029064.9|guanine nucleotide binding protein (G protein), beta 1 	ENSMUST00000105616.3|Gnb1|ENSMUSG00000029064.9|guanine nucleotide binding protein (G protein), beta 1 	ENSMUST00000030940.7|Gnb1|ENSMUSG00000029064.9|guanine nucleotide binding protein (G protein), beta 1
mm10_v2_chr8_-_104443001_104443047	0.00406697	AACAGUC	ENSMUST00000041769.6|Dync1li2|ENSMUSG00000035770.7|dynein, cytoplasmic 1 light intermediate chain 2
mm10_v2_chr17_-_46831413_46831413	0.0037503	AACAGUC	ENSMUST00000040624.5|Gltscr1l|ENSMUSG00000036568.6|GLTSCR1-like
mm10_v2_chr18_+_73573044_73573044	0.00322515	AACAGUC	ENSMUST00000091852.4|Mex3c|ENSMUSG00000037253.8|mex3 homolog C (C. elegans)
mm10_v2_chr13_+_43398375_43398402	0.00269239	AACAGUC	ENSMUST00000071926.3|Nol7|ENSMUSG00000063200.3|nucleolar protein 7
mm10_v2_chr13_+_42052015_42052072	0.00181528	AACAGUC	ENSMUST00000060148.5|Hivep1|ENSMUSG00000021366.7|human immunodeficiency virus type I enhancer binding protein 1
mm10_v2_chr1_+_52630692_52630757	0.0012331	AACAGUC	ENSMUST00000165859.1|Tmem194b|ENSMUSG00000043015.9|transmembrane protein 194B
mm10_v2_chr13_+_14613242_14613272	0.000943094	AACAGUC	ENSMUST00000170836.2|Psma2|ENSMUSG00000015671.10|proteasome (prosome, macropain) subunit, alpha type 2
mm10_v2_chr2_-_155945282_155945367	0.000778573	AACAGUC	ENSMUST00000040162.2|Gdf5|ENSMUSG00000038259.4|growth differentiation factor 5
mm10_v2_chr15_-_78718113_78718113	0.000713571	AACAGUC	ENSMUST00000088592.4|Elfn2|ENSMUSG00000043460.6|leucine rich repeat and fibronectin type III, extracellular 2
mm10_v2_chr6_-_92706145_92706234	0.000626244	AACAGUC	ENSMUST00000032093.5|Prickle2|ENSMUSG00000030020.7|prickle homolog 2 (Drosophila)
mm10_v2_chr2_+_57237651_57237729	0.000450772	AACAGUC	ENSMUST00000169687.1|Gpd2|ENSMUSG00000026827.6|glycerol phosphate dehydrogenase 2, mitochondrial
mm10_v2_chr12_+_59066908_59066931	0.000159619	AACAGUC	ENSMUST00000021381.4|Pnn|ENSMUSG00000020994.4|pinin
mm10_v2_chr4_-_72200833_72200928	2.35766e-06	AACAGUC	ENSMUST00000102848.2|Tle1|ENSMUSG00000008305.12|transducin-like enhancer of split 1, homolog of Drosophila E(spl) 	ENSMUST00000072695.6|Tle1|ENSMUSG00000008305.12|transducin-like enhancer of split 1, homolog of Drosophila E(spl) 	ENSMUST00000107337.1|Tle1|ENSMUSG00000008305.12|transducin-like enhancer of split 1, homolog of Drosophila E(spl) 	ENSMUST00000074216.7|Tle1|ENSMUSG00000008305.12|transducin-like enhancer of split 1, homolog of Drosophila E(spl)
