mm10_v2_chr9_+_121760000_121760061	0.085144	AAGGUGC	ENSMUST00000093772.3|Zfp651|ENSMUSG00000013419.6|zinc finger protein 651
mm10_v2_chr16_-_22163299_22163299	0.0717069	AAGGUGC	ENSMUST00000100052.4|Igf2bp2|ENSMUSG00000033581.10|insulin-like growth factor 2 mRNA binding protein 2
mm10_v2_chrX_+_9199865_9199907	0.0644879	AAGGUGC	ENSMUST00000069763.2|Lancl3|ENSMUSG00000047344.9|LanC lantibiotic synthetase component C-like 3 (bacterial)
mm10_v2_chr2_+_19445632_19445663	0.0609797	AAGGUGC	ENSMUST00000028068.2|Ptf1a|ENSMUSG00000026735.2|pancreas specific transcription factor, 1a
mm10_v2_chr12_+_84875769_84875769	0.0593354	AAGGUGC	ENSMUST00000171853.1|D030025P21Rik|ENSMUSG00000092130.1|RIKEN cDNA D030025P21 gene
mm10_v2_chr15_-_12592556_12592556	0.0546577	AAGGUGC	ENSMUST00000075317.5|Pdzd2|ENSMUSG00000022197.9|PDZ domain containing 2
mm10_v2_chr11_+_32455362_32455438	0.0465651	AAGGUGC	ENSMUST00000051053.4|Ubtd2|ENSMUSG00000044949.4|ubiquitin domain containing 2
mm10_v2_chr5_+_130219706_130219744	0.0437233	AAGGUGC	ENSMUST00000065329.6|Tmem248|ENSMUSG00000053094.9|transmembrane protein 248
mm10_v2_chr5_+_75574916_75575001	0.0426535	AAGGUGC	ENSMUST00000144270.1|Kit|ENSMUSG00000005672.6|kit oncogene 	ENSMUST00000005815.6|Kit|ENSMUSG00000005672.6|kit oncogene
mm10_v2_chr3_+_18054258_18054325	0.0388531	AAGGUGC	ENSMUST00000026120.6|Bhlhe22|ENSMUSG00000025128.6|basic helix-loop-helix family, member e22
mm10_v2_chr13_-_48870885_48870951	0.0379158	AAGGUGC	ENSMUST00000035540.7|Phf2|ENSMUSG00000038025.7|PHD finger protein 2
mm10_v2_chr10_-_78244602_78244676	0.0368758	AAGGUGC	ENSMUST00000000384.6|Trappc10|ENSMUSG00000000374.7|trafficking protein particle complex 10
mm10_v2_chr6_-_126645784_126645801	0.0358675	AAGGUGC	ENSMUST00000055168.3|Kcna1|ENSMUSG00000047976.3|potassium voltage-gated channel, shaker-related subfamily, member 1
mm10_v2_chr16_-_52454074_52454074	0.0351184	AAGGUGC	ENSMUST00000023312.7|Alcam|ENSMUSG00000022636.7|activated leukocyte cell adhesion molecule
mm10_v2_chr13_-_41487306_41487346	0.0302425	AAGGUGC	ENSMUST00000021794.6|Nedd9|ENSMUSG00000021365.8|neural precursor cell expressed, developmentally down-regulated gene 9
mm10_v2_chr1_+_89070406_89070421	0.0301548	AAGGUGC	ENSMUST00000066279.4|Sh3bp4|ENSMUSG00000036206.6|SH3-domain binding protein 4
mm10_v2_chr11_-_29515017_29515040	0.0297983	AAGGUGC	ENSMUST00000133103.1|Prorsd1|ENSMUSG00000032673.5|prolyl-tRNA synthetase domain containing 1 	ENSMUST00000039900.3|Prorsd1|ENSMUSG00000032673.5|prolyl-tRNA synthetase domain containing 1
mm10_v2_chr4_+_138454305_138454327	0.0291999	AAGGUGC	ENSMUST00000050918.3|Camk2n1|ENSMUSG00000046447.3|calcium/calmodulin-dependent protein kinase II inhibitor 1
mm10_v2_chr6_+_134830145_134830179	0.0291818	AAGGUGC	ENSMUST00000046303.5|Crebl2|ENSMUSG00000032652.7|cAMP responsive element binding protein-like 2
mm10_v2_chr11_-_116086929_116086995	0.028898	AAGGUGC	ENSMUST00000074628.6|Wbp2|ENSMUSG00000034341.11|WW domain binding protein 2 	ENSMUST00000106444.3|Wbp2|ENSMUSG00000034341.11|WW domain binding protein 2
mm10_v2_chr1_-_161876656_161876682	0.0285031	AAGGUGC	ENSMUST00000048377.5|Suco|ENSMUSG00000040297.7|SUN domain containing ossification factor
mm10_v2_chr12_-_15816762_15816881	0.028273	AAGGUGC	ENSMUST00000020922.7|Trib2|ENSMUSG00000020601.7|tribbles homolog 2 (Drosophila)
mm10_v2_chr9_-_53536728_53536747	0.0279077	AAGGUGC	ENSMUST00000118282.1|Atm|ENSMUSG00000034218.9|ataxia telangiectasia mutated homolog (human)
mm10_v2_chr3_+_105452326_105452365	0.0275461	AAGGUGC	ENSMUST00000098761.3|Kcnd3|ENSMUSG00000040896.10|potassium voltage-gated channel, Shal-related family, member 3
mm10_v2_chr16_+_24393350_24393428	0.0257706	AAGGUGC	ENSMUST00000038053.6|Lpp|ENSMUSG00000033306.8|LIM domain containing preferred translocation partner in lipoma
mm10_v2_chr1_-_124045523_124045571	0.0248934	AAGGUGC	ENSMUST00000112606.1|Dpp10|ENSMUSG00000036815.10|dipeptidylpeptidase 10
mm10_v2_chr12_+_52516077_52516077	0.0246984	AAGGUGC	ENSMUST00000110725.1|Arhgap5|ENSMUSG00000035133.8|Rho GTPase activating protein 5
mm10_v2_chr10_+_57486354_57486414	0.0218876	AAGGUGC	ENSMUST00000079833.4|Hsf2|ENSMUSG00000019878.7|heat shock factor 2
mm10_v2_chr10_+_40349265_40349387	0.0216269	AAGGUGC	ENSMUST00000044672.4|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19 	ENSMUST00000095743.2|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19
mm10_v2_chr18_+_76241580_76241741	0.0213066	AAGGUGC	ENSMUST00000168423.1|Smad2|ENSMUSG00000024563.9|SMAD family member 2 	ENSMUST00000091831.6|Smad2|ENSMUSG00000024563.9|SMAD family member 2
mm10_v2_chr2_+_156420837_156420909	0.0198332	AAGGUGC	ENSMUST00000103137.3|Epb4.1l1|ENSMUSG00000027624.11|erythrocyte protein band 4.1-like 1
mm10_v2_chr1_-_161131428_161131511	0.0192583	AAGGUGC	ENSMUST00000111611.1|Klhl20|ENSMUSG00000026705.10|kelch-like 20
mm10_v2_chr8_-_120589304_120589304	0.0181786	AAGGUGC	ENSMUST00000034278.5|Gins2|ENSMUSG00000031821.5|GINS complex subunit 2 (Psf2 homolog)
mm10_v2_chr5_+_137518880_137518880	0.0177257	AAGGUGC	ENSMUST00000031727.7|Gigyf1|ENSMUSG00000029714.7|GRB10 interacting GYF protein 1
mm10_v2_chr13_+_41606216_41606216	0.0176575	AAGGUGC	ENSMUST00000129449.1|Tmem170b|ENSMUSG00000087370.2|transmembrane protein 170B
mm10_v2_chr3_-_59344256_59344367	0.0171354	AAGGUGC	ENSMUST00000039419.6|Igsf10|ENSMUSG00000036334.7|immunoglobulin superfamily, member 10
mm10_v2_chr3_+_96697076_96697090	0.0152921	AAGGUGC	ENSMUST00000162778.2|Pias3|ENSMUSG00000028101.12|protein inhibitor of activated STAT 3 	ENSMUST00000064900.9|Pias3|ENSMUSG00000028101.12|protein inhibitor of activated STAT 3
mm10_v2_chr12_-_91590009_91590056	0.014555	AAGGUGC	ENSMUST00000021345.6|Gtf2a1|ENSMUSG00000020962.7|general transcription factor II A, 1
mm10_v2_chr3_-_84304762_84304809	0.0142787	AAGGUGC	ENSMUST00000107692.1|Trim2|ENSMUSG00000027993.10|tripartite motif-containing 2
mm10_v2_chr6_+_119236507_119236532	0.0138859	AAGGUGC	ENSMUST00000037434.6|Cacna2d4|ENSMUSG00000041460.8|calcium channel, voltage-dependent, alpha 2/delta subunit 4
mm10_v2_chr3_-_101110278_101110294	0.0132286	AAGGUGC	ENSMUST00000102694.3|Ptgfrn|ENSMUSG00000027864.8|prostaglandin F2 receptor negative regulator
mm10_v2_chr8_-_109737714_109737786	0.0132195	AAGGUGC	ENSMUST00000093162.3|Atxn1l|ENSMUSG00000069895.3|ataxin 1-like
mm10_v2_chr13_+_97241096_97241116	0.0126775	AAGGUGC	ENSMUST00000041623.7|Enc1|ENSMUSG00000041773.7|ectodermal-neural cortex 1
mm10_v2_chr14_+_47472547_47472625	0.0126058	AAGGUGC	ENSMUST00000168833.1|Fbxo34|ENSMUSG00000037536.7|F-box protein 34 	ENSMUST00000163324.1|Fbxo34|ENSMUSG00000037536.7|F-box protein 34 	ENSMUST00000043112.7|Fbxo34|ENSMUSG00000037536.7|F-box protein 34
mm10_v2_chr9_+_68653761_68653786	0.0120878	AAGGUGC	ENSMUST00000034766.7|Rora|ENSMUSG00000032238.11|RAR-related orphan receptor alpha
mm10_v2_chr8_+_45507768_45507818	0.0120023	AAGGUGC	ENSMUST00000067065.7|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000098788.3|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000067107.7|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000171337.2|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000138049.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000141039.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr19_-_59943647_59943678	0.0113045	AAGGUGC	ENSMUST00000171986.1|Rab11fip2|ENSMUSG00000040022.8|RAB11 family interacting protein 2 (class I)
mm10_v2_chr5_+_23434435_23434471	0.0112383	AAGGUGC	ENSMUST00000094962.2|Kmt2e|ENSMUSG00000029004.9|lysine (K)-specific methyltransferase 2E 	ENSMUST00000115128.1|Kmt2e|ENSMUSG00000029004.9|lysine (K)-specific methyltransferase 2E
mm10_v2_chr5_+_96997676_96997766	0.0110322	AAGGUGC	ENSMUST00000112974.1|Bmp2k|ENSMUSG00000034663.7|BMP2 inducible kinase 	ENSMUST00000035635.7|Bmp2k|ENSMUSG00000034663.7|BMP2 inducible kinase
mm10_v2_chr13_+_9276477_9276620	0.0107256	AAGGUGC	ENSMUST00000174552.1|Dip2c|ENSMUSG00000048264.9|DIP2 disco-interacting protein 2 homolog C (Drosophila)
mm10_v2_chr4_-_119492563_119492628	0.0106406	AAGGUGC	ENSMUST00000049994.7|Rimkla|ENSMUSG00000048899.8|ribosomal modification protein rimK-like family member A
mm10_v2_chr2_+_37452231_37452286	0.0106296	AAGGUGC	ENSMUST00000148470.1|Rabgap1|ENSMUSG00000035437.9|RAB GTPase activating protein 1 	ENSMUST00000066055.3|Rabgap1|ENSMUSG00000035437.9|RAB GTPase activating protein 1 	ENSMUST00000112920.1|Rabgap1|ENSMUSG00000035437.9|RAB GTPase activating protein 1
mm10_v2_chr1_-_166002591_166002609	0.0103122	AAGGUGC	ENSMUST00000111429.4|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000176800.1|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr13_+_109903089_109903110	0.0101375	AAGGUGC	ENSMUST00000120664.1|Pde4d|ENSMUSG00000021699.11|phosphodiesterase 4D, cAMP specific
mm10_v2_chr8_-_67974567_67974596	0.00933147	AAGGUGC	ENSMUST00000098696.3|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000038959.9|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000093469.4|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr1_-_170215380_170215420	0.0089187	AAGGUGC	ENSMUST00000027979.7|Uhmk1|ENSMUSG00000026667.8|U2AF homology motif (UHM) kinase 1 	ENSMUST00000123399.1|Uhmk1|ENSMUSG00000026667.8|U2AF homology motif (UHM) kinase 1
mm10_v2_chr9_-_14381242_14381242	0.00858536	AAGGUGC	ENSMUST00000167549.1|Endod1|ENSMUSG00000037419.8|endonuclease domain containing 1
mm10_v2_chr5_-_73256555_73256636	0.00838711	AAGGUGC	ENSMUST00000171179.1|Fryl|ENSMUSG00000090491.1|furry homolog-like (Drosophila) 	ENSMUST00000101127.5|Fryl|ENSMUSG00000070733.7|furry homolog-like (Drosophila)
mm10_v2_chr17_-_29888570_29888629	0.00826043	AAGGUGC	ENSMUST00000171691.1|Mdga1|ENSMUSG00000043557.9|MAM domain containing glycosylphosphatidylinositol anchor 1
mm10_v2_chr12_+_12262139_12262157	0.00790207	AAGGUGC	ENSMUST00000069066.6|Fam49a|ENSMUSG00000020589.10|family with sequence similarity 49, member A 	ENSMUST00000069005.8|Fam49a|ENSMUSG00000020589.10|family with sequence similarity 49, member A
mm10_v2_chr11_+_69765899_69765925	0.00699664	AAGGUGC	ENSMUST00000108640.1|Zbtb4|ENSMUSG00000018750.8|zinc finger and BTB domain containing 4 	ENSMUST00000108639.1|Zbtb4|ENSMUSG00000018750.8|zinc finger and BTB domain containing 4
mm10_v2_chr1_+_176814660_176814660	0.00678089	AAGGUGC	ENSMUST00000056773.8|Sdccag8|ENSMUSG00000026504.11|serologically defined colon cancer antigen 8 	ENSMUST00000027785.8|Sdccag8|ENSMUSG00000026504.11|serologically defined colon cancer antigen 8
mm10_v2_chr4_-_129672712_129672774	0.00668239	AAGGUGC	ENSMUST00000102590.4|Kpna6|ENSMUSG00000003731.7|karyopherin (importin) alpha 6
mm10_v2_chr6_+_52713729_52713800	0.00642189	AAGGUGC	ENSMUST00000080723.4|Tax1bp1|ENSMUSG00000004535.6|Tax1 (human T cell leukemia virus type I) binding protein 1 	ENSMUST00000149588.1|Tax1bp1|ENSMUSG00000004535.6|Tax1 (human T cell leukemia virus type I) binding protein 1
mm10_v2_chr2_+_65845767_65845799	0.00545081	AAGGUGC	ENSMUST00000122912.1|Csrnp3|ENSMUSG00000044647.10|cysteine-serine-rich nuclear protein 3
mm10_v2_chr7_-_126502380_126502419	0.00520874	AAGGUGC	ENSMUST00000167759.1|Atxn2l|ENSMUSG00000032637.9|ataxin 2-like
mm10_v2_chr11_+_29373618_29373777	0.00504573	AAGGUGC	ENSMUST00000040182.6|Ccdc88a|ENSMUSG00000032740.10|coiled coil domain containing 88A 	ENSMUST00000109477.1|Ccdc88a|ENSMUSG00000032740.10|coiled coil domain containing 88A
mm10_v2_chr11_+_103101682_103101726	0.00486235	AAGGUGC	ENSMUST00000107040.3|Acbd4|ENSMUSG00000056938.10|acyl-Coenzyme A binding domain containing 4 	ENSMUST00000140372.1|Acbd4|ENSMUSG00000056938.10|acyl-Coenzyme A binding domain containing 4 	ENSMUST00000024492.8|Acbd4|ENSMUSG00000056938.10|acyl-Coenzyme A binding domain containing 4 	ENSMUST00000134884.1|Acbd4|ENSMUSG00000056938.10|acyl-Coenzyme A binding domain containing 4
mm10_v2_chr5_-_69592311_69592337	0.00485735	AAGGUGC	ENSMUST00000031117.6|Gnpda2|ENSMUSG00000029209.9|glucosamine-6-phosphate deaminase 2
mm10_v2_chr16_-_92826004_92826080	0.0048043	AAGGUGC	ENSMUST00000023673.7|Runx1|ENSMUSG00000022952.10|runt related transcription factor 1
mm10_v2_chr3_-_146812951_146812983	0.00475851	AAGGUGC	ENSMUST00000102515.3|Prkacb|ENSMUSG00000005034.9|protein kinase, cAMP dependent, catalytic, beta
mm10_v2_chr1_-_63114516_63114667	0.00448471	AAGGUGC	ENSMUST00000097718.2|Ino80d|ENSMUSG00000040865.9|INO80 complex subunit D
mm10_v2_chr11_-_94677404_94677515	0.00410552	AAGGUGC	ENSMUST00000116349.2|Xylt2|ENSMUSG00000020868.9|xylosyltransferase II
mm10_v2_chr9_+_118926453_118926568	0.0027591	AAGGUGC	ENSMUST00000073109.5|Ctdspl|ENSMUSG00000047409.7|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like
mm10_v2_chr1_+_134560190_134560213	0.00217069	AAGGUGC	ENSMUST00000112198.1|Kdm5b|ENSMUSG00000042207.11|lysine (K)-specific demethylase 5B 	ENSMUST00000112197.1|Kdm5b|ENSMUSG00000042207.11|lysine (K)-specific demethylase 5B
mm10_v2_chr6_-_72899952_72899985	0.00190066	AAGGUGC	ENSMUST00000068697.8|Kcmf1|ENSMUSG00000055239.8|potassium channel modulatory factor 1
mm10_v2_chr11_+_4257557_4257557	0.00182565	AAGGUGC	ENSMUST00000066283.5|Lif|ENSMUSG00000034394.8|leukemia inhibitory factor
mm10_v2_chr15_+_80711292_80711340	0.00172029	AAGGUGC	ENSMUST00000067689.7|Tnrc6b|ENSMUSG00000047888.9|trinucleotide repeat containing 6b
mm10_v2_chr1_+_74409376_74409399	0.00170879	AAGGUGC	ENSMUST00000027366.6|Vil1|ENSMUSG00000026175.6|villin 1
mm10_v2_chr6_-_25690729_25690729	0.00161953	AAGGUGC	ENSMUST00000054867.6|Gpr37|ENSMUSG00000039904.8|G protein-coupled receptor 37
mm10_v2_chr11_-_100738153_100738215	0.000885905	AAGGUGC	ENSMUST00000155500.1|Rab5c|ENSMUSG00000019173.5|RAB5C, member RAS oncogene family 	ENSMUST00000107364.1|Rab5c|ENSMUSG00000019173.5|RAB5C, member RAS oncogene family 	ENSMUST00000019317.5|Rab5c|ENSMUSG00000019173.5|RAB5C, member RAS oncogene family
mm10_v2_chr12_+_73901370_73901391	0.000698182	AAGGUGC	ENSMUST00000110461.1|Hif1a|ENSMUSG00000021109.7|hypoxia inducible factor 1, alpha subunit
mm10_v2_chr17_+_87107621_87107684	6.3567e-05	AAGGUGC	ENSMUST00000041369.6|Socs5|ENSMUSG00000037104.8|suppressor of cytokine signaling 5
mm10_v2_chrX_-_108834303_108834381	5.48652e-06	AAGGUGC	ENSMUST00000101283.3|Brwd3|ENSMUSG00000063663.5|bromodomain and WD repeat domain containing 3 	ENSMUST00000150434.1|Brwd3|ENSMUSG00000063663.5|bromodomain and WD repeat domain containing 3
