mm10_v2_chr10_+_4611971_4612021	1.24163	ACUGCAU	ENSMUST00000105590.1|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha) 	ENSMUST00000067086.7|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha)
mm10_v2_chr8_-_4779513_4779591	0.844298	ACUGCAU	ENSMUST00000022945.7|Shcbp1|ENSMUSG00000022322.7|Shc SH2-domain binding protein 1
mm10_v2_chr9_-_22389113_22389206	0.532657	ACUGCAU	ENSMUST00000040912.7|Anln|ENSMUSG00000036777.7|anillin, actin binding protein
mm10_v2_chr6_+_103510874_103510898	0.313552	ACUGCAU	ENSMUST00000066905.6|Chl1|ENSMUSG00000030077.9|cell adhesion molecule with homology to L1CAM
mm10_v2_chr18_+_40258361_40258361	0.30671	ACUGCAU	ENSMUST00000091927.4|Kctd16|ENSMUSG00000051401.6|potassium channel tetramerisation domain containing 16
mm10_v2_chr5_+_110286306_110286391	0.297275	ACUGCAU	ENSMUST00000007296.5|Pole|ENSMUSG00000007080.8|polymerase (DNA directed), epsilon 	ENSMUST00000112482.1|Pole|ENSMUSG00000007080.8|polymerase (DNA directed), epsilon
mm10_v2_chr1_+_34801704_34801776	0.278778	ACUGCAU	ENSMUST00000047664.9|Arhgef4|ENSMUSG00000037509.12|Rho guanine nucleotide exchange factor (GEF) 4
mm10_v2_chr4_-_91372028_91372069	0.277911	ACUGCAU	ENSMUST00000107110.1|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000008633.8|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000107118.1|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chr3_+_108537523_108537583	0.275282	ACUGCAU	ENSMUST00000029485.5|1700013F07Rik|ENSMUSG00000027886.7|RIKEN cDNA 1700013F07 gene
mm10_v2_chr19_+_18670780_18670810	0.259059	ACUGCAU	ENSMUST00000025632.9|2410127L17Rik|ENSMUSG00000024726.9|RIKEN cDNA 2410127L17 gene
mm10_v2_chr12_+_40446050_40446099	0.241329	ACUGCAU	ENSMUST00000037488.6|Dock4|ENSMUSG00000035954.9|dedicator of cytokinesis 4
mm10_v2_chr6_-_131388417_131388464	0.214886	ACUGCAU	ENSMUST00000032309.6|Ybx3|ENSMUSG00000030189.9|Y box protein 3 	ENSMUST00000087865.2|Ybx3|ENSMUSG00000030189.9|Y box protein 3
mm10_v2_chr6_-_47594967_47595047	0.210147	ACUGCAU	ENSMUST00000081721.6|Ezh2|ENSMUSG00000029687.10|enhancer of zeste homolog 2 (Drosophila) 	ENSMUST00000114618.1|Ezh2|ENSMUSG00000029687.10|enhancer of zeste homolog 2 (Drosophila) 	ENSMUST00000114616.1|Ezh2|ENSMUSG00000029687.10|enhancer of zeste homolog 2 (Drosophila)
mm10_v2_chr16_+_7069825_7069846	0.194996	ACUGCAU	ENSMUST00000056416.7|Rbfox1|ENSMUSG00000008658.9|RNA binding protein, fox-1 homolog (C. elegans) 1
mm10_v2_chr16_+_14361552_14361601	0.193567	ACUGCAU	ENSMUST00000100167.3|Abcc1|ENSMUSG00000023088.10|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENSMUST00000154748.1|Abcc1|ENSMUSG00000023088.10|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENSMUST00000134776.1|Abcc1|ENSMUSG00000023088.10|ATP-binding cassette, sub-family C (CFTR/MRP), member 1
mm10_v2_chr2_+_65620829_65620857	0.193406	ACUGCAU	ENSMUST00000028377.7|Scn2a1|ENSMUSG00000075318.6|sodium channel, voltage-gated, type II, alpha 1
mm10_v2_chr5_-_24030649_24030707	0.192986	ACUGCAU	ENSMUST00000030849.6|Fam126a|ENSMUSG00000028995.8|family with sequence similarity 126, member A
mm10_v2_chr1_+_187997821_187997834	0.191983	ACUGCAU	ENSMUST00000027906.6|Esrrg|ENSMUSG00000026610.7|estrogen-related receptor gamma
mm10_v2_chr16_-_32003122_32003287	0.187648	ACUGCAU	ENSMUST00000023457.5|Senp5|ENSMUSG00000022772.5|SUMO/sentrin specific peptidase 5
mm10_v2_chr14_-_46822232_46822266	0.187372	ACUGCAU	ENSMUST00000111817.1|Gmfb|ENSMUSG00000062014.6|glia maturation factor, beta 	ENSMUST00000079314.5|Gmfb|ENSMUSG00000062014.6|glia maturation factor, beta
mm10_v2_chr15_-_73184840_73184971	0.180478	ACUGCAU	ENSMUST00000044113.10|Ago2|ENSMUSG00000036698.10|argonaute RISC catalytic subunit 2
mm10_v2_chr6_-_99666762_99666786	0.168253	ACUGCAU	ENSMUST00000032151.2|Eif4e3|ENSMUSG00000093661.1|eukaryotic translation initiation factor 4E member 3
mm10_v2_chr5_+_146384947_146384994	0.165462	ACUGCAU	ENSMUST00000110600.1|Wasf3|ENSMUSG00000029636.7|WAS protein family, member 3 	ENSMUST00000016143.7|Wasf3|ENSMUSG00000029636.7|WAS protein family, member 3
mm10_v2_chr5_-_100500592_100500657	0.162193	ACUGCAU	ENSMUST00000149714.1|Lin54|ENSMUSG00000035310.9|lin-54 homolog (C. elegans) 	ENSMUST00000046154.5|Lin54|ENSMUSG00000035310.9|lin-54 homolog (C. elegans)
mm10_v2_chr1_-_119837613_119837673	0.146027	ACUGCAU	ENSMUST00000064091.5|Ptpn4|ENSMUSG00000026384.7|protein tyrosine phosphatase, non-receptor type 4
mm10_v2_chr14_-_98169542_98169595	0.145986	ACUGCAU	ENSMUST00000069334.7|Dach1|ENSMUSG00000055639.10|dachshund 1 (Drosophila) 	ENSMUST00000071533.6|Dach1|ENSMUSG00000055639.10|dachshund 1 (Drosophila)
mm10_v2_chr15_-_96699698_96699717	0.144387	ACUGCAU	ENSMUST00000023099.6|Slc38a2|ENSMUSG00000022462.6|solute carrier family 38, member 2
mm10_v2_chr3_+_63976106_63976135	0.142772	ACUGCAU	ENSMUST00000029405.7|Gmps|ENSMUSG00000027823.8|guanine monophosphate synthetase
mm10_v2_chr13_-_47106176_47106206	0.141052	ACUGCAU	ENSMUST00000021807.6|Dek|ENSMUSG00000021377.8|DEK oncogene (DNA binding) 	ENSMUST00000135278.1|Dek|ENSMUSG00000021377.8|DEK oncogene (DNA binding)
mm10_v2_chr6_+_34709442_34709497	0.138231	ACUGCAU	ENSMUST00000115021.1|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr10_-_123196916_123196961	0.136237	ACUGCAU	ENSMUST00000020334.7|Usp15|ENSMUSG00000020124.9|ubiquitin specific peptidase 15
mm10_v2_chr1_+_59482133_59482179	0.134116	ACUGCAU	ENSMUST00000114246.2|Fzd7|ENSMUSG00000041075.7|frizzled homolog 7 (Drosophila) 	ENSMUST00000037105.6|Fzd7|ENSMUSG00000041075.7|frizzled homolog 7 (Drosophila)
mm10_v2_chr16_+_16896469_16896598	0.126063	ACUGCAU	ENSMUST00000027373.9|Ppm1f|ENSMUSG00000026181.11|protein phosphatase 1F (PP2C domain containing)
mm10_v2_chr15_-_64312636_64312692	0.120969	ACUGCAU	ENSMUST00000177083.1|Asap1|ENSMUSG00000022377.10|ArfGAP with SH3 domain, ankyrin repeat and PH domain1 	ENSMUST00000177371.1|Asap1|ENSMUSG00000022377.10|ArfGAP with SH3 domain, ankyrin repeat and PH domain1
mm10_v2_chr8_-_81014866_81014942	0.120252	ACUGCAU	ENSMUST00000042724.6|Usp38|ENSMUSG00000038250.8|ubiquitin specific peptidase 38
mm10_v2_chr2_+_12924041_12924113	0.1106	ACUGCAU	ENSMUST00000134794.1|Pter|ENSMUSG00000026730.6|phosphotriesterase related 	ENSMUST00000028063.4|Pter|ENSMUSG00000026730.6|phosphotriesterase related 	ENSMUST00000154269.1|Pter|ENSMUSG00000026730.6|phosphotriesterase related 	ENSMUST00000114796.3|Pter|ENSMUSG00000026730.6|phosphotriesterase related
mm10_v2_chr14_-_100149764_100149764	0.109341	ACUGCAU	ENSMUST00000097079.4|Klf12|ENSMUSG00000072294.4|Kruppel-like factor 12
mm10_v2_chr1_+_37997975_37998010	0.102865	ACUGCAU	ENSMUST00000027252.7|Eif5b|ENSMUSG00000026083.7|eukaryotic translation initiation factor 5B
mm10_v2_chr7_-_98309471_98309538	0.101603	ACUGCAU	ENSMUST00000033020.7|Acer3|ENSMUSG00000030760.8|alkaline ceramidase 3
mm10_v2_chr5_+_13399309_13399382	0.101579	ACUGCAU	ENSMUST00000030714.7|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 	ENSMUST00000141968.1|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm10_v2_chr7_+_90130227_90130279	0.0987034	ACUGCAU	ENSMUST00000049537.7|Picalm|ENSMUSG00000039361.9|phosphatidylinositol binding clathrin assembly protein
mm10_v2_chr6_-_24956106_24956131	0.0985908	ACUGCAU	ENSMUST00000127247.2|Tmem229a|ENSMUSG00000048022.10|transmembrane protein 229A
mm10_v2_chr2_+_122028544_122028563	0.0983834	ACUGCAU	ENSMUST00000028668.7|Eif3j1|ENSMUSG00000027236.8|eukaryotic translation initiation factor 3, subunit J1
mm10_v2_chr4_-_88438900_88438933	0.0982643	ACUGCAU	ENSMUST00000132493.1|Ptplad2|ENSMUSG00000028497.6|protein tyrosine phosphatase-like A domain containing 2 	ENSMUST00000030221.2|Ptplad2|ENSMUSG00000028497.6|protein tyrosine phosphatase-like A domain containing 2 	ENSMUST00000151280.1|Ptplad2|ENSMUSG00000028497.6|protein tyrosine phosphatase-like A domain containing 2
mm10_v2_chr9_-_72111827_72111895	0.0915683	ACUGCAU	ENSMUST00000183404.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12 	ENSMUST00000184783.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr3_-_26133734_26133734	0.0879889	ACUGCAU	ENSMUST00000108308.3|Nlgn1|ENSMUSG00000063887.7|neuroligin 1 	ENSMUST00000075054.4|Nlgn1|ENSMUSG00000063887.7|neuroligin 1
mm10_v2_chr4_+_55350043_55350078	0.0868264	ACUGCAU	ENSMUST00000030134.8|Rad23b|ENSMUSG00000028426.10|RAD23b homolog (S. cerevisiae)
mm10_v2_chrX_-_51018011_51018032	0.0834569	ACUGCAU	ENSMUST00000053593.7|Rap2c|ENSMUSG00000050029.7|RAP2C, member of RAS oncogene family
mm10_v2_chr14_+_101729907_101729958	0.0781938	ACUGCAU	ENSMUST00000100337.3|Lmo7|ENSMUSG00000033060.9|LIM domain only 7
mm10_v2_chr5_-_113908685_113908758	0.077131	ACUGCAU	ENSMUST00000004646.6|Coro1c|ENSMUSG00000004530.6|coronin, actin binding protein 1C
mm10_v2_chr2_+_119675062_119675095	0.0766938	ACUGCAU	ENSMUST00000028767.8|Rtf1|ENSMUSG00000027304.9|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm10_v2_chr11_-_6475992_6476102	0.0730766	ACUGCAU	ENSMUST00000179343.1|Purb|ENSMUSG00000094483.1|purine rich element binding protein B
mm10_v2_chr4_-_133753611_133753666	0.0724721	ACUGCAU	ENSMUST00000145664.2|Arid1a|ENSMUSG00000007880.10|AT rich interactive domain 1A (SWI-like) 	ENSMUST00000105897.3|Arid1a|ENSMUSG00000007880.10|AT rich interactive domain 1A (SWI-like)
mm10_v2_chr2_+_102658640_102658669	0.0681661	ACUGCAU	ENSMUST00000080210.3|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm10_v2_chr7_+_120677579_120677630	0.0678063	ACUGCAU	ENSMUST00000060175.6|BC030336|ENSMUSG00000046096.6|cDNA sequence BC030336
mm10_v2_chr1_-_160792908_160792969	0.0627056	ACUGCAU	ENSMUST00000028049.7|Rabgap1l|ENSMUSG00000026721.9|RAB GTPase activating protein 1-like
mm10_v2_chr5_+_108065742_108065767	0.0618457	ACUGCAU	ENSMUST00000081567.4|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2 	ENSMUST00000170319.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2 	ENSMUST00000112626.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2
mm10_v2_chr4_-_132843111_132843184	0.059842	ACUGCAU	ENSMUST00000105919.1|Ppp1r8|ENSMUSG00000028882.7|protein phosphatase 1, regulatory (inhibitor) subunit 8 	ENSMUST00000030702.7|Ppp1r8|ENSMUSG00000028882.7|protein phosphatase 1, regulatory (inhibitor) subunit 8
mm10_v2_chr13_+_118714678_118714701	0.0587397	ACUGCAU	ENSMUST00000022246.8|Fgf10|ENSMUSG00000021732.8|fibroblast growth factor 10
mm10_v2_chr18_-_34954302_34954359	0.0587029	ACUGCAU	ENSMUST00000025217.8|Hspa9|ENSMUSG00000024359.8|heat shock protein 9
mm10_v2_chr16_-_84735742_84735795	0.0586834	ACUGCAU	ENSMUST00000116584.1|Mrpl39|ENSMUSG00000022889.7|mitochondrial ribosomal protein L39
mm10_v2_chr9_-_107231816_107231909	0.0586499	ACUGCAU	ENSMUST00000044532.4|Dock3|ENSMUSG00000039716.6|dedicator of cyto-kinesis 3
mm10_v2_chr7_+_66109474_66109515	0.0584141	ACUGCAU	ENSMUST00000036372.6|Chsy1|ENSMUSG00000032640.9|chondroitin sulfate synthase 1
mm10_v2_chr11_+_80209019_80209057	0.0581589	ACUGCAU	ENSMUST00000077451.7|Rhot1|ENSMUSG00000017686.10|ras homolog gene family, member T1 	ENSMUST00000055056.9|Rhot1|ENSMUSG00000017686.10|ras homolog gene family, member T1
mm10_v2_chr15_-_36794498_36794547	0.0555056	ACUGCAU	ENSMUST00000110361.1|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 	ENSMUST00000022894.7|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 	ENSMUST00000110359.1|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm10_v2_chr3_-_139075178_139075253	0.0553793	ACUGCAU	ENSMUST00000098574.2|Rap1gds1|ENSMUSG00000028149.6|RAP1, GTP-GDP dissociation stimulator 1 	ENSMUST00000029796.6|Rap1gds1|ENSMUSG00000028149.6|RAP1, GTP-GDP dissociation stimulator 1
mm10_v2_chr1_-_128417352_128417416	0.0551193	ACUGCAU	ENSMUST00000027602.8|Dars|ENSMUSG00000026356.9|aspartyl-tRNA synthetase 	ENSMUST00000064309.7|Dars|ENSMUSG00000026356.9|aspartyl-tRNA synthetase
mm10_v2_chr9_-_32541589_32541602	0.0550723	ACUGCAU	ENSMUST00000016231.7|Fli1|ENSMUSG00000016087.7|Friend leukemia integration 1
mm10_v2_chr10_+_110920170_110920188	0.0532341	ACUGCAU	ENSMUST00000020403.5|Csrp2|ENSMUSG00000020186.6|cysteine and glycine-rich protein 2
mm10_v2_chr1_+_172376528_172376599	0.0527962	ACUGCAU	ENSMUST00000052455.2|Pigm|ENSMUSG00000050229.2|phosphatidylinositol glycan anchor biosynthesis, class M
mm10_v2_chr15_-_50889691_50889714	0.0494951	ACUGCAU	ENSMUST00000165201.2|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human) 	ENSMUST00000184458.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr11_-_85235065_85235137	0.0470973	ACUGCAU	ENSMUST00000018625.9|Appbp2|ENSMUSG00000018481.9|amyloid beta precursor protein (cytoplasmic tail) binding protein 2
mm10_v2_chr14_-_79771305_79771318	0.0464612	ACUGCAU	ENSMUST00000039568.5|Pcdh8|ENSMUSG00000036422.5|protocadherin 8
mm10_v2_chr2_+_121955964_121956001	0.044215	ACUGCAU	ENSMUST00000036647.6|Ctdspl2|ENSMUSG00000033411.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm10_v2_chr5_+_86804214_86804276	0.0435376	ACUGCAU	ENSMUST00000119339.1|Ythdc1|ENSMUSG00000035851.8|YTH domain containing 1 	ENSMUST00000120498.1|Ythdc1|ENSMUSG00000035851.8|YTH domain containing 1
mm10_v2_chr9_-_71592265_71592297	0.0395246	ACUGCAU	ENSMUST00000166843.1|Gcom1|ENSMUSG00000092137.1|GRINL1A complex locus 	ENSMUST00000163998.1|Gcom1|ENSMUSG00000092137.1|GRINL1A complex locus 	ENSMUST00000169573.1|Myzap|ENSMUSG00000041361.7|myocardial zonula adherens protein
mm10_v2_chr3_+_54693088_54693105	0.0394915	ACUGCAU	ENSMUST00000170552.1|Supt20|ENSMUSG00000027751.9|suppressor of Ty 20
mm10_v2_chr1_+_42697146_42697146	0.0394005	ACUGCAU	ENSMUST00000054883.2|Pou3f3|ENSMUSG00000045515.2|POU domain, class 3, transcription factor 3
mm10_v2_chr14_+_84443553_84443568	0.0363667	ACUGCAU	ENSMUST00000071370.5|Pcdh17|ENSMUSG00000035566.6|protocadherin 17
mm10_v2_chr13_-_98891036_98891063	0.0359733	ACUGCAU	ENSMUST00000109399.2|Tnpo1|ENSMUSG00000009470.10|transportin 1
mm10_v2_chr16_+_42907563_42907684	0.0350667	ACUGCAU	ENSMUST00000151244.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000114694.2|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr1_-_190170671_190170744	0.0334312	ACUGCAU	ENSMUST00000175916.1|Prox1|ENSMUSG00000010175.7|prospero-related homeobox 1
mm10_v2_chrX_-_136743675_136743692	0.0333042	ACUGCAU	ENSMUST00000166478.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2 	ENSMUST00000113097.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2
mm10_v2_chr9_-_71485893_71485975	0.0324161	ACUGCAU	ENSMUST00000034720.5|Polr2m|ENSMUSG00000032199.6|polymerase (RNA) II (DNA directed) polypeptide M
mm10_v2_chr15_+_96287518_96287604	0.0320187	ACUGCAU	ENSMUST00000134985.2|Arid2|ENSMUSG00000033237.12|AT rich interactive domain 2 (ARID, RFX-like) 	ENSMUST00000096250.4|Arid2|ENSMUSG00000033237.12|AT rich interactive domain 2 (ARID, RFX-like)
mm10_v2_chr5_+_88886809_88886825	0.0308231	ACUGCAU	ENSMUST00000148750.1|Slc4a4|ENSMUSG00000060961.8|solute carrier family 4 (anion exchanger), member 4
mm10_v2_chr7_-_89338709_89338795	0.0286354	ACUGCAU	ENSMUST00000137723.1|Tmem135|ENSMUSG00000039428.4|transmembrane protein 135 	ENSMUST00000117852.1|Tmem135|ENSMUSG00000039428.4|transmembrane protein 135 	ENSMUST00000041968.3|Tmem135|ENSMUSG00000039428.4|transmembrane protein 135
mm10_v2_chr1_+_61638819_61638841	0.0270458	ACUGCAU	ENSMUST00000138768.1|Pard3b|ENSMUSG00000052062.8|par-3 partitioning defective 3 homolog B (C. elegans) 	ENSMUST00000075374.3|Pard3b|ENSMUSG00000052062.8|par-3 partitioning defective 3 homolog B (C. elegans)
mm10_v2_chr17_+_3326552_3326585	0.0269999	ACUGCAU	ENSMUST00000169838.1|Tiam2|ENSMUSG00000023800.8|T cell lymphoma invasion and metastasis 2
mm10_v2_chr13_+_55693082_55693151	0.026516	ACUGCAU	ENSMUST00000057844.8|B230219D22Rik|ENSMUSG00000045767.8|RIKEN cDNA B230219D22 gene
mm10_v2_chr5_-_135934590_135934613	0.0263061	ACUGCAU	ENSMUST00000055808.5|Ywhag|ENSMUSG00000051391.8|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm10_v2_chr12_+_49382791_49382883	0.0255219	ACUGCAU	ENSMUST00000179669.1|Foxg1|ENSMUSG00000020950.9|forkhead box G1
mm10_v2_chr3_-_108911687_108911746	0.0229638	ACUGCAU	ENSMUST00000029480.8|Prpf38b|ENSMUSG00000027881.8|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
mm10_v2_chr12_-_27342696_27342726	0.0185162	ACUGCAU	ENSMUST00000079063.5|Sox11|ENSMUSG00000063632.5|SRY-box containing gene 11
mm10_v2_chr16_+_56075399_56075492	0.0170493	ACUGCAU	ENSMUST00000089362.2|Senp7|ENSMUSG00000052917.8|SUMO1/sentrin specific peptidase 7 	ENSMUST00000089360.3|Senp7|ENSMUSG00000052917.8|SUMO1/sentrin specific peptidase 7 	ENSMUST00000049128.6|Senp7|ENSMUSG00000052917.8|SUMO1/sentrin specific peptidase 7
mm10_v2_chr8_-_116732991_116733076	0.0170207	ACUGCAU	ENSMUST00000109102.2|Cdyl2|ENSMUSG00000031758.9|chromodomain protein, Y chromosome-like 2
mm10_v2_chr7_-_105744312_105744361	0.0169276	ACUGCAU	ENSMUST00000141116.1|Taf10|ENSMUSG00000043866.4|TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr4_-_3574844_3574853	0.0150323	ACUGCAU	ENSMUST00000029891.5|Tmem68|ENSMUSG00000028232.7|transmembrane protein 68
mm10_v2_chr15_-_8444449_8444506	0.0143134	ACUGCAU	ENSMUST00000052965.6|Nipbl|ENSMUSG00000022141.6|Nipped-B homolog (Drosophila)
mm10_v2_chr6_-_35539765_35539888	0.011946	ACUGCAU	ENSMUST00000031866.5|Mtpn|ENSMUSG00000029840.5|myotrophin
mm10_v2_chr4_+_57637816_57637846	0.0100289	ACUGCAU	ENSMUST00000150412.1|Gm20459|ENSMUSG00000089945.4|predicted gene 20459
mm10_v2_chr19_-_21472552_21472672	0.00979814	ACUGCAU	ENSMUST00000087600.3|Gda|ENSMUSG00000058624.6|guanine deaminase
mm10_v2_chr4_+_66827545_66827617	0.00956832	ACUGCAU	ENSMUST00000048096.5|Tlr4|ENSMUSG00000039005.7|toll-like receptor 4 	ENSMUST00000107365.2|Tlr4|ENSMUSG00000039005.7|toll-like receptor 4
mm10_v2_chr17_-_10319324_10319380	0.00729848	ACUGCAU	ENSMUST00000097414.3|Qk|ENSMUSG00000062078.8|quaking 	ENSMUST00000042296.7|Qk|ENSMUSG00000062078.8|quaking
mm10_v2_chr18_+_60925612_60925639	0.00677372	ACUGCAU	ENSMUST00000102888.3|Camk2a|ENSMUSG00000024617.10|calcium/calmodulin-dependent protein kinase II alpha 	ENSMUST00000025519.4|Camk2a|ENSMUSG00000024617.10|calcium/calmodulin-dependent protein kinase II alpha
mm10_v2_chr5_+_32458974_32459110	0.00631326	ACUGCAU	ENSMUST00000015100.8|Ppp1cb|ENSMUSG00000014956.9|protein phosphatase 1, catalytic subunit, beta isoform
mm10_v2_chr9_+_119894876_119894913	0.00621249	ACUGCAU	ENSMUST00000036561.6|Wdr48|ENSMUSG00000032512.6|WD repeat domain 48
mm10_v2_chrX_-_41911877_41911912	0.00613377	ACUGCAU	ENSMUST00000047037.8|Thoc2|ENSMUSG00000037475.9|THO complex 2
mm10_v2_chr11_-_82890541_82890626	0.00387352	ACUGCAU	ENSMUST00000092844.6|Rad51d|ENSMUSG00000018841.11|RAD51 homolog D 	ENSMUST00000021033.9|Rad51d|ENSMUSG00000018841.11|RAD51 homolog D 	ENSMUST00000018985.8|Rad51d|ENSMUSG00000018841.11|RAD51 homolog D
mm10_v2_chr2_-_120609283_120609317	0.00384448	ACUGCAU	ENSMUST00000102496.1|Lrrc57|ENSMUSG00000027286.10|leucine rich repeat containing 57
mm10_v2_chr4_+_40722912_40723001	0.00368041	ACUGCAU	ENSMUST00000164233.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1 	ENSMUST00000137246.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1 	ENSMUST00000125442.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1
mm10_v2_chr6_-_23839420_23839487	0.002991	ACUGCAU	ENSMUST00000115358.2|Cadps2|ENSMUSG00000017978.12|Ca2+-dependent activator protein for secretion 2 	ENSMUST00000163871.2|Cadps2|ENSMUSG00000017978.12|Ca2+-dependent activator protein for secretion 2
mm10_v2_chrX_+_166238901_166238914	0.00293579	ACUGCAU	ENSMUST00000112235.1|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b
mm10_v2_chr17_-_44736648_44736674	0.00254189	ACUGCAU	ENSMUST00000113572.2|Runx2|ENSMUSG00000039153.10|runt related transcription factor 2
mm10_v2_chr3_-_69127098_69127113	0.00183704	ACUGCAU	ENSMUST00000029353.2|Kpna4|ENSMUSG00000027782.4|karyopherin (importin) alpha 4
mm10_v2_chr15_-_93336800_93336852	0.000476238	ACUGCAU	ENSMUST00000080299.6|Yaf2|ENSMUSG00000022634.9|YY1 associated factor 2
