mm10_v2_chr11_-_96005872_96005952	0.107974	AGGUAGU	ENSMUST00000013559.2|Igf2bp1|ENSMUSG00000013415.3|insulin-like growth factor 2 mRNA binding protein 1
mm10_v2_chr6_+_4505493_4505493	0.105703	AGGUAGU	ENSMUST00000031668.8|Col1a2|ENSMUSG00000029661.10|collagen, type I, alpha 2
mm10_v2_chr1_+_45311538_45311638	0.103604	AGGUAGU	ENSMUST00000087883.6|Col3a1|ENSMUSG00000026043.12|collagen, type III, alpha 1
mm10_v2_chr11_+_94936224_94936260	0.0899509	AGGUAGU	ENSMUST00000001547.7|Col1a1|ENSMUSG00000001506.10|collagen, type I, alpha 1
mm10_v2_chr13_+_96924674_96924694	0.0707823	AGGUAGU	ENSMUST00000171324.1|Gcnt4|ENSMUSG00000091387.1|glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase)
mm10_v2_chr6_+_4747306_4747372	0.0662914	AGGUAGU	ENSMUST00000175823.1|Peg10|ENSMUSG00000092035.2|paternally expressed 10 	ENSMUST00000176204.1|Peg10|ENSMUSG00000092035.2|paternally expressed 10 	ENSMUST00000166678.1|Peg10|ENSMUSG00000092035.2|paternally expressed 10
mm10_v2_chr18_-_15403680_15403687	0.0628296	AGGUAGU	ENSMUST00000079081.6|Aqp4|ENSMUSG00000024411.9|aquaporin 4
mm10_v2_chr1_-_168431695_168431750	0.0598674	AGGUAGU	ENSMUST00000176790.1|Pbx1|ENSMUSG00000052534.9|pre B cell leukemia homeobox 1
mm10_v2_chr10_-_45470201_45470260	0.0584746	AGGUAGU	ENSMUST00000079390.6|Lin28b|ENSMUSG00000063804.7|lin-28 homolog B (C. elegans)
mm10_v2_chr6_-_145048809_145048821	0.0568291	AGGUAGU	ENSMUST00000032402.5|Bcat1|ENSMUSG00000030268.11|branched chain aminotransferase 1, cytosolic
mm10_v2_chr2_+_152081529_152081624	0.0555476	AGGUAGU	ENSMUST00000064061.3|Scrt2|ENSMUSG00000060257.2|scratch homolog 2, zinc finger protein (Drosophila)
mm10_v2_chr2_-_93334467_93334515	0.0528386	AGGUAGU	ENSMUST00000111265.2|Tspan18|ENSMUSG00000027217.7|tetraspanin 18
mm10_v2_chr17_-_68004075_68004140	0.0507328	AGGUAGU	ENSMUST00000024840.5|Arhgap28|ENSMUSG00000024043.7|Rho GTPase activating protein 28
mm10_v2_chr15_+_55307743_55307762	0.0452321	AGGUAGU	ENSMUST00000023053.5|Col14a1|ENSMUSG00000022371.9|collagen, type XIV, alpha 1 	ENSMUST00000110221.2|Col14a1|ENSMUSG00000022371.9|collagen, type XIV, alpha 1 	ENSMUST00000110217.3|Col14a1|ENSMUSG00000022371.9|collagen, type XIV, alpha 1
mm10_v2_chr1_-_37541003_37541046	0.0443892	AGGUAGU	ENSMUST00000151952.1|Mgat4a|ENSMUSG00000026110.9|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm10_v2_chr9_+_111311674_111311758	0.0443642	AGGUAGU	ENSMUST00000078626.3|Trank1|ENSMUSG00000062296.4|tetratricopeptide repeat and ankyrin repeat containing 1
mm10_v2_chr3_-_92083132_92083147	0.041084	AGGUAGU	ENSMUST00000058150.6|Lor|ENSMUSG00000043165.6|loricrin
mm10_v2_chr16_-_23520579_23520673	0.0366311	AGGUAGU	ENSMUST00000089883.5|Masp1|ENSMUSG00000022887.8|mannan-binding lectin serine peptidase 1
mm10_v2_chr12_-_27342696_27342726	0.0356628	AGGUAGU	ENSMUST00000079063.5|Sox11|ENSMUSG00000063632.5|SRY-box containing gene 11
mm10_v2_chrX_+_36328353_36328418	0.0348636	AGGUAGU	ENSMUST00000016383.3|Lonrf3|ENSMUSG00000016239.5|LON peptidase N-terminal domain and ring finger 3
mm10_v2_chr4_+_86874396_86874438	0.0290848	AGGUAGU	ENSMUST00000045224.7|Acer2|ENSMUSG00000038007.8|alkaline ceramidase 2 	ENSMUST00000084433.4|Acer2|ENSMUSG00000038007.8|alkaline ceramidase 2
mm10_v2_chr6_-_52217505_52217550	0.027981	AGGUAGU	ENSMUST00000048715.6|Hoxa7|ENSMUSG00000038236.6|homeobox A7
mm10_v2_chr9_+_72806874_72806874	0.0277614	AGGUAGU	ENSMUST00000055535.8|Prtg|ENSMUSG00000036030.9|protogenin homolog (Gallus gallus)
mm10_v2_chr9_+_27790947_27790991	0.0267047	AGGUAGU	ENSMUST00000115243.2|Opcml|ENSMUSG00000062257.6|opioid binding protein/cell adhesion molecule-like
mm10_v2_chr7_+_16130285_16130333	0.0256572	AGGUAGU	ENSMUST00000168693.1|Slc8a2|ENSMUSG00000030376.7|solute carrier family 8 (sodium/calcium exchanger), member 2
mm10_v2_chr10_+_95940663_95940703	0.0255977	AGGUAGU	ENSMUST00000053484.6|Eea1|ENSMUSG00000036499.8|early endosome antigen 1
mm10_v2_chr8_-_84104773_84104793	0.0253911	AGGUAGU	ENSMUST00000041367.7|Dcaf15|ENSMUSG00000037103.7|DDB1 and CUL4 associated factor 15
mm10_v2_chr2_+_153065988_153066002	0.0189308	AGGUAGU	ENSMUST00000129377.1|Ccm2l|ENSMUSG00000027474.6|cerebral cavernous malformation 2-like 	ENSMUST00000109800.1|Ccm2l|ENSMUSG00000027474.6|cerebral cavernous malformation 2-like
mm10_v2_chr7_+_44442398_44442485	0.0188941	AGGUAGU	ENSMUST00000058667.8|Lrrc4b|ENSMUSG00000047085.8|leucine rich repeat containing 4B
mm10_v2_chr9_+_103112072_103112093	0.0182642	AGGUAGU	ENSMUST00000035155.6|Rab6b|ENSMUSG00000032549.6|RAB6B, member RAS oncogene family
mm10_v2_chr11_+_96286623_96286653	0.0178319	AGGUAGU	ENSMUST00000049352.7|Hoxb7|ENSMUSG00000038721.8|homeobox B7
mm10_v2_chr3_-_133234886_133234897	0.0166139	AGGUAGU	ENSMUST00000147041.3|Arhgef38|ENSMUSG00000040969.8|Rho guanine nucleotide exchange factor (GEF) 38 	ENSMUST00000161022.2|Arhgef38|ENSMUSG00000040969.8|Rho guanine nucleotide exchange factor (GEF) 38
mm10_v2_chr8_-_122699066_122699119	0.0165287	AGGUAGU	ENSMUST00000127984.1|Cbfa2t3|ENSMUSG00000006362.9|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm10_v2_chr13_-_111808938_111809018	0.0158329	AGGUAGU	ENSMUST00000109267.2|Map3k1|ENSMUSG00000021754.11|mitogen-activated protein kinase kinase kinase 1
mm10_v2_chr1_+_133131143_133131283	0.0153884	AGGUAGU	ENSMUST00000052529.3|Ppp1r15b|ENSMUSG00000046062.5|protein phosphatase 1, regulatory (inhibitor) subunit 15b
mm10_v2_chrX_+_110814390_110814413	0.0149285	AGGUAGU	ENSMUST00000078229.3|Pou3f4|ENSMUSG00000056854.3|POU domain, class 3, transcription factor 4
mm10_v2_chr3_+_103058302_103058352	0.0141351	AGGUAGU	ENSMUST00000029445.6|Nras|ENSMUSG00000027852.8|neuroblastoma ras oncogene
mm10_v2_chr16_-_97611072_97611195	0.0141273	AGGUAGU	ENSMUST00000000395.6|Tmprss2|ENSMUSG00000000385.7|transmembrane protease, serine 2
mm10_v2_chr2_+_168081004_168081035	0.0140257	AGGUAGU	ENSMUST00000052125.6|Pard6b|ENSMUSG00000044641.7|par-6 (partitioning defective 6) homolog beta (C. elegans)
mm10_v2_chrX_-_133688978_133689005	0.0137193	AGGUAGU	ENSMUST00000149154.1|Pcdh19|ENSMUSG00000051323.10|protocadherin 19 	ENSMUST00000167944.1|Pcdh19|ENSMUSG00000051323.10|protocadherin 19
mm10_v2_chr1_+_93803945_93803998	0.0132517	AGGUAGU	ENSMUST00000027505.6|Ing5|ENSMUSG00000026283.7|inhibitor of growth family, member 5
mm10_v2_chr8_-_90348343_90348386	0.013114	AGGUAGU	ENSMUST00000109621.3|Tox3|ENSMUSG00000043668.7|TOX high mobility group box family member 3
mm10_v2_chr10_+_127739516_127739592	0.0129729	AGGUAGU	ENSMUST00000054287.7|Zbtb39|ENSMUSG00000044617.7|zinc finger and BTB domain containing 39
mm10_v2_chr10_-_5922385_5922407	0.0127139	AGGUAGU	ENSMUST00000131996.1|Rgs17|ENSMUSG00000019775.11|regulator of G-protein signaling 17 	ENSMUST00000064225.7|Rgs17|ENSMUSG00000019775.11|regulator of G-protein signaling 17
mm10_v2_chr14_-_124677089_124677127	0.0125646	AGGUAGU	ENSMUST00000095529.3|Fgf14|ENSMUSG00000025551.7|fibroblast growth factor 14
mm10_v2_chr11_+_57801575_57801649	0.0109991	AGGUAGU	ENSMUST00000020826.5|Sap30l|ENSMUSG00000020519.5|SAP30-like
mm10_v2_chr9_-_117252450_117252489	0.0106808	AGGUAGU	ENSMUST00000111773.3|Rbms3|ENSMUSG00000039607.9|RNA binding motif, single stranded interacting protein 	ENSMUST00000068962.7|Rbms3|ENSMUSG00000039607.9|RNA binding motif, single stranded interacting protein 	ENSMUST00000044901.7|Rbms3|ENSMUSG00000039607.9|RNA binding motif, single stranded interacting protein
mm10_v2_chr9_-_64022043_64022066	0.0104105	AGGUAGU	ENSMUST00000041029.5|Smad6|ENSMUSG00000036867.7|SMAD family member 6
mm10_v2_chr19_+_30030439_30030528	0.0103772	AGGUAGU	ENSMUST00000025739.7|Uhrf2|ENSMUSG00000024817.7|ubiquitin-like, containing PHD and RING finger domains 2
mm10_v2_chr11_+_67586520_67586546	0.0100316	AGGUAGU	ENSMUST00000108682.2|Gas7|ENSMUSG00000033066.9|growth arrest specific 7
mm10_v2_chr10_-_64090265_64090297	0.00995837	AGGUAGU	ENSMUST00000105439.1|Lrrtm3|ENSMUSG00000042846.8|leucine rich repeat transmembrane neuronal 3
mm10_v2_chr5_-_135545108_135545128	0.00990931	AGGUAGU	ENSMUST00000060311.8|Hip1|ENSMUSG00000039959.9|huntingtin interacting protein 1
mm10_v2_chr15_+_8109313_8109356	0.0097376	AGGUAGU	ENSMUST00000163765.1|Nup155|ENSMUSG00000022142.7|nucleoporin 155
mm10_v2_chr5_-_107289561_107289637	0.00868912	AGGUAGU	ENSMUST00000031224.8|Tgfbr3|ENSMUSG00000029287.8|transforming growth factor, beta receptor III
mm10_v2_chr17_-_91092715_91092822	0.00831752	AGGUAGU	ENSMUST00000160800.2|Nrxn1|ENSMUSG00000024109.12|neurexin I 	ENSMUST00000159778.1|Nrxn1|ENSMUSG00000024109.12|neurexin I 	ENSMUST00000160844.3|Nrxn1|ENSMUSG00000024109.12|neurexin I
mm10_v2_chr10_-_120476469_120476527	0.00802165	AGGUAGU	ENSMUST00000072777.7|Hmga2|ENSMUSG00000056758.8|high mobility group AT-hook 2 	ENSMUST00000159699.1|Hmga2|ENSMUSG00000056758.8|high mobility group AT-hook 2
mm10_v2_chr15_+_11064764_11064797	0.00800906	AGGUAGU	ENSMUST00000061318.7|Adamts12|ENSMUSG00000047497.9|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12
mm10_v2_chr17_+_33929514_33929586	0.00778633	AGGUAGU	ENSMUST00000047503.9|Rgl2|ENSMUSG00000041354.9|ral guanine nucleotide dissociation stimulator-like 2
mm10_v2_chr6_+_134920401_134920434	0.0076698	AGGUAGU	ENSMUST00000067327.4|Cdkn1b|ENSMUSG00000003031.8|cyclin-dependent kinase inhibitor 1B 	ENSMUST00000003115.6|Cdkn1b|ENSMUSG00000003031.8|cyclin-dependent kinase inhibitor 1B
mm10_v2_chr16_+_33062512_33062549	0.00727405	AGGUAGU	ENSMUST00000023497.2|Lmln|ENSMUSG00000022802.2|leishmanolysin-like (metallopeptidase M8 family)
mm10_v2_chr4_+_140700487_140700541	0.0072604	AGGUAGU	ENSMUST00000071169.2|Rcc2|ENSMUSG00000040945.7|regulator of chromosome condensation 2
mm10_v2_chr11_-_76846968_76847045	0.00724673	AGGUAGU	ENSMUST00000021201.5|Cpd|ENSMUSG00000020841.5|carboxypeptidase D
mm10_v2_chr16_+_37916440_37916496	0.00690761	AGGUAGU	ENSMUST00000061274.7|Gpr156|ENSMUSG00000046961.7|G protein-coupled receptor 156
mm10_v2_chr3_-_10440054_10440127	0.00685711	AGGUAGU	ENSMUST00000099223.4|Snx16|ENSMUSG00000027534.10|sorting nexin 16 	ENSMUST00000029047.6|Snx16|ENSMUSG00000027534.10|sorting nexin 16
mm10_v2_chr3_+_68468162_68468209	0.0067447	AGGUAGU	ENSMUST00000182532.1|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr2_+_60209887_60210073	0.006668	AGGUAGU	ENSMUST00000102748.4|March7|ENSMUSG00000026977.11|membrane-associated ring finger (C3HC4) 7 	ENSMUST00000102747.1|March7|ENSMUSG00000026977.11|membrane-associated ring finger (C3HC4) 7
mm10_v2_chr15_-_6874969_6874969	0.00626422	AGGUAGU	ENSMUST00000022746.6|Osmr|ENSMUSG00000022146.6|oncostatin M receptor 	ENSMUST00000176826.1|Osmr|ENSMUSG00000022146.6|oncostatin M receptor
mm10_v2_chr2_+_112379204_112379253	0.00600717	AGGUAGU	ENSMUST00000028552.3|Katnbl1|ENSMUSG00000027132.3|katanin p80 subunit B like 1
mm10_v2_chr1_+_59764264_59764286	0.00593503	AGGUAGU	ENSMUST00000087435.5|Bmpr2|ENSMUSG00000067336.5|bone morphogenetic protein receptor, type II (serine/threonine kinase)
mm10_v2_chr10_-_121476248_121476275	0.00587245	AGGUAGU	ENSMUST00000026902.7|Rassf3|ENSMUSG00000025795.7|Ras association (RalGDS/AF-6) domain family member 3
mm10_v2_chr9_-_103364970_103364996	0.00578371	AGGUAGU	ENSMUST00000116517.2|Cdv3|ENSMUSG00000032803.8|carnitine deficiency-associated gene expressed in ventricle 3
mm10_v2_chr7_+_90426312_90426312	0.00564781	AGGUAGU	ENSMUST00000061391.7|Ccdc89|ENSMUSG00000044362.7|coiled-coil domain containing 89
mm10_v2_chr8_+_14095849_14095915	0.00546307	AGGUAGU	ENSMUST00000152652.1|Dlgap2|ENSMUSG00000047495.9|discs, large (Drosophila) homolog-associated protein 2 	ENSMUST00000133298.1|Dlgap2|ENSMUSG00000047495.9|discs, large (Drosophila) homolog-associated protein 2
mm10_v2_chr11_+_54438188_54438220	0.00536634	AGGUAGU	ENSMUST00000046835.7|Fnip1|ENSMUSG00000035992.9|folliculin interacting protein 1
mm10_v2_chr4_-_82859571_82859679	0.00486213	AGGUAGU	ENSMUST00000156055.1|Zdhhc21|ENSMUSG00000028403.9|zinc finger, DHHC domain containing 21 	ENSMUST00000030110.8|Zdhhc21|ENSMUSG00000028403.9|zinc finger, DHHC domain containing 21
mm10_v2_chr14_+_11553523_11553542	0.00476416	AGGUAGU	ENSMUST00000022264.6|Ptprg|ENSMUSG00000021745.7|protein tyrosine phosphatase, receptor type, G
mm10_v2_chrX_-_104201126_104201185	0.00473227	AGGUAGU	ENSMUST00000056502.6|C77370|ENSMUSG00000046449.9|expressed sequence C77370 	ENSMUST00000118314.1|C77370|ENSMUSG00000046449.9|expressed sequence C77370
mm10_v2_chr18_-_61726302_61726336	0.00445152	AGGUAGU	ENSMUST00000062991.7|Grpel2|ENSMUSG00000024580.7|GrpE-like 2, mitochondrial
mm10_v2_chr8_-_27174623_27174651	0.00409823	AGGUAGU	ENSMUST00000033878.6|Rab11fip1|ENSMUSG00000031488.7|RAB11 family interacting protein 1 (class I) 	ENSMUST00000054212.6|Rab11fip1|ENSMUSG00000031488.7|RAB11 family interacting protein 1 (class I)
mm10_v2_chr10_+_127677064_127677099	0.00397632	AGGUAGU	ENSMUST00000118612.1|Tmem194|ENSMUSG00000040195.5|transmembrane protein 194 	ENSMUST00000048099.4|Tmem194|ENSMUSG00000040195.5|transmembrane protein 194
mm10_v2_chr10_-_76345254_76345371	0.00387216	AGGUAGU	ENSMUST00000036033.7|Dip2a|ENSMUSG00000020231.9|DIP2 disco-interacting protein 2 homolog A (Drosophila) 	ENSMUST00000160048.1|Dip2a|ENSMUSG00000020231.9|DIP2 disco-interacting protein 2 homolog A (Drosophila) 	ENSMUST00000105417.3|Dip2a|ENSMUSG00000020231.9|DIP2 disco-interacting protein 2 homolog A (Drosophila)
mm10_v2_chr13_+_25056206_25056253	0.00383379	AGGUAGU	ENSMUST00000069614.6|Dcdc2a|ENSMUSG00000035910.9|doublecortin domain containing 2a
mm10_v2_chr10_-_61383523_61383523	0.00373408	AGGUAGU	ENSMUST00000020289.8|Pald1|ENSMUSG00000020092.8|phosphatase domain containing, paladin 1
mm10_v2_chr16_-_67620880_67620922	0.00361262	AGGUAGU	ENSMUST00000114292.1|Cadm2|ENSMUSG00000064115.7|cell adhesion molecule 2 	ENSMUST00000120898.1|Cadm2|ENSMUSG00000064115.7|cell adhesion molecule 2
mm10_v2_chrX_-_111697069_111697127	0.00351833	AGGUAGU	ENSMUST00000113422.2|Hdx|ENSMUSG00000034551.6|highly divergent homeobox 	ENSMUST00000038472.5|Hdx|ENSMUSG00000034551.6|highly divergent homeobox
mm10_v2_chr2_+_156196642_156196775	0.00335332	AGGUAGU	ENSMUST00000037401.8|Phf20|ENSMUSG00000038116.10|PHD finger protein 20
mm10_v2_chrX_-_162159717_162159732	0.0033226	AGGUAGU	ENSMUST00000087085.3|Nhs|ENSMUSG00000059493.7|Nance-Horan syndrome (human)
mm10_v2_chrX_-_7188713_7188743	0.00317138	AGGUAGU	ENSMUST00000004428.7|Clcn5|ENSMUSG00000004317.8|chloride channel 5
mm10_v2_chr12_-_91590009_91590056	0.00311973	AGGUAGU	ENSMUST00000021345.6|Gtf2a1|ENSMUSG00000020962.7|general transcription factor II A, 1
mm10_v2_chr4_+_95967205_95967320	0.00287805	AGGUAGU	ENSMUST00000030306.7|Hook1|ENSMUSG00000028572.7|hook homolog 1 (Drosophila)
mm10_v2_chr9_-_107231816_107231909	0.00268693	AGGUAGU	ENSMUST00000044532.4|Dock3|ENSMUSG00000039716.6|dedicator of cyto-kinesis 3
mm10_v2_chr17_-_26095487_26095514	0.00267279	AGGUAGU	ENSMUST00000025007.5|Nme4|ENSMUSG00000024177.8|NME/NM23 nucleoside diphosphate kinase 4
mm10_v2_chr6_-_52204415_52204587	0.00252986	AGGUAGU	ENSMUST00000048794.6|Hoxa5|ENSMUSG00000038253.6|homeobox A5
mm10_v2_chr11_+_95712673_95712673	0.00232905	AGGUAGU	ENSMUST00000107717.1|Zfp652|ENSMUSG00000075595.3|zinc finger protein 652
mm10_v2_chr2_+_154436437_154436535	0.00230267	AGGUAGU	ENSMUST00000109725.1|Cbfa2t2|ENSMUSG00000038533.9|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human) 	ENSMUST00000099178.3|Cbfa2t2|ENSMUSG00000038533.9|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human) 	ENSMUST00000045270.8|Cbfa2t2|ENSMUSG00000038533.9|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human) 	ENSMUST00000109724.1|Cbfa2t2|ENSMUSG00000038533.9|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)
mm10_v2_chr10_+_58446845_58446928	0.00212936	AGGUAGU	ENSMUST00000003310.5|Ranbp2|ENSMUSG00000003226.6|RAN binding protein 2
mm10_v2_chr8_+_94472763_94472763	0.00206048	AGGUAGU	ENSMUST00000053085.5|Nlrc5|ENSMUSG00000074151.6|NLR family, CARD domain containing 5
mm10_v2_chrX_-_48454152_48454193	0.00190557	AGGUAGU	ENSMUST00000114958.1|Elf4|ENSMUSG00000031103.6|E74-like factor 4 (ets domain transcription factor)
mm10_v2_chr12_-_11436607_11436649	0.00171039	AGGUAGU	ENSMUST00000072299.5|Vsnl1|ENSMUSG00000054459.6|visinin-like 1
mm10_v2_chr6_-_120493807_120493913	0.00161618	AGGUAGU	ENSMUST00000178687.1|Cecr6|ENSMUSG00000094626.1|cat eye syndrome chromosome region, candidate 6
mm10_v2_chr3_+_93442330_93442389	0.00153182	AGGUAGU	ENSMUST00000064257.5|Tchh|ENSMUSG00000052415.5|trichohyalin
mm10_v2_chr19_-_7383026_7383063	0.00142973	AGGUAGU	ENSMUST00000025924.2|AI846148|ENSMUSG00000024970.4|expressed sequence AI846148
mm10_v2_chr8_-_110997764_110997839	0.00137511	AGGUAGU	ENSMUST00000040416.7|Ddx19a|ENSMUSG00000015023.7|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a
mm10_v2_chr10_-_43540945_43541024	0.00129671	AGGUAGU	ENSMUST00000147196.1|1700021F05Rik|ENSMUSG00000019797.4|RIKEN cDNA 1700021F05 gene 	ENSMUST00000019932.3|1700021F05Rik|ENSMUSG00000019797.4|RIKEN cDNA 1700021F05 gene
mm10_v2_chr9_+_110132015_110132102	0.0012933	AGGUAGU	ENSMUST00000088716.5|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 	ENSMUST00000111969.1|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 	ENSMUST00000035057.7|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 	ENSMUST00000111966.1|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 	ENSMUST00000111968.1|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
mm10_v2_chr7_+_97332311_97332331	0.00124597	AGGUAGU	ENSMUST00000054107.5|Kctd21|ENSMUSG00000044952.5|potassium channel tetramerisation domain containing 21
mm10_v2_chrX_+_56609843_56609864	0.00104072	AGGUAGU	ENSMUST00000077741.5|Slc9a6|ENSMUSG00000060681.8|solute carrier family 9 (sodium/hydrogen exchanger), member 6 	ENSMUST00000114784.2|Slc9a6|ENSMUSG00000060681.8|solute carrier family 9 (sodium/hydrogen exchanger), member 6
mm10_v2_chr5_+_13399309_13399382	0.000866073	AGGUAGU	ENSMUST00000030714.7|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 	ENSMUST00000141968.1|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm10_v2_chr6_+_92091378_92091390	0.000652456	AGGUAGU	ENSMUST00000113460.1|Nr2c2|ENSMUSG00000005893.8|nuclear receptor subfamily 2, group C, member 2
mm10_v2_chr2_+_122738495_122738600	0.000469455	AGGUAGU	ENSMUST00000005954.8|Bloc1s6|ENSMUSG00000005804.8|biogenesis of organelles complex-1, subunit 6, pallidin
mm10_v2_chr18_-_10181792_10181792	0.000311242	AGGUAGU	ENSMUST00000067947.5|Rock1|ENSMUSG00000024290.8|Rho-associated coiled-coil containing protein kinase 1
mm10_v2_chr11_+_96292453_96292508	0.000280725	AGGUAGU	ENSMUST00000173432.1|Hoxb6|ENSMUSG00000000690.4|homeobox B6
mm10_v2_chr4_+_28813125_28813136	4.21081e-05	AGGUAGU	ENSMUST00000029964.5|Epha7|ENSMUSG00000028289.6|Eph receptor A7 	ENSMUST00000080934.4|Epha7|ENSMUSG00000028289.6|Eph receptor A7
