mm10_v2_chr7_+_121707189_121707189	0.374922	Bhlhe40	ENSMUST00000065310.2|1700069B07Rik|ENSMUSG00000053081.2|RIKEN cDNA 1700069B07 gene
mm10_v2_chr4_+_148039035_148039087	0.308361	Bhlhe40	ENSMUST00000097788.4|Mthfr|ENSMUSG00000029009.11|5,10-methylenetetrahydrofolate reductase
mm10_v2_chr4_+_148039097_148039190	0.290965	Bhlhe40	ENSMUST00000141283.1|Mthfr|ENSMUSG00000029009.11|5,10-methylenetetrahydrofolate reductase
mm10_v2_chr4_-_148038769_148038821	0.28151	Bhlhe40	ENSMUST00000030879.5|Clcn6|ENSMUSG00000029016.7|chloride channel 6 	ENSMUST00000137724.1|Clcn6|ENSMUSG00000029016.7|chloride channel 6
mm10_v2_chrX_+_153832225_153832293	0.201125	Bhlhe40	ENSMUST00000148708.1|Spin2c|ENSMUSG00000046550.8|spindlin family, member 2C 	ENSMUST00000123264.1|Spin2c|ENSMUSG00000046550.8|spindlin family, member 2C 	ENSMUST00000049999.8|Spin2c|ENSMUSG00000046550.8|spindlin family, member 2C
mm10_v2_chr15_+_80255184_80255263	0.181485	Bhlhe40	ENSMUST00000109605.3|Atf4|ENSMUSG00000042406.7|activating transcription factor 4
mm10_v2_chr17_+_70561739_70561787	0.168062	Bhlhe40	ENSMUST00000097288.2|Dlgap1|ENSMUSG00000003279.10|discs, large (Drosophila) homolog-associated protein 1
mm10_v2_chr3_-_95882232_95882251	0.159846	Bhlhe40	ENSMUST00000161866.1|Gm129|ENSMUSG00000038550.4|predicted gene 129
mm10_v2_chrX_-_152327430_152327495	0.157344	Bhlhe40	ENSMUST00000181635.1|2900056M20Rik|ENSMUSG00000087403.2|RIKEN cDNA 2900056M20 gene 	ENSMUST00000141922.1|2900056M20Rik|ENSMUSG00000087403.2|RIKEN cDNA 2900056M20 gene 	ENSMUST00000154085.1|2900056M20Rik|ENSMUSG00000087403.2|RIKEN cDNA 2900056M20 gene 	ENSMUST00000148326.1|2900056M20Rik|ENSMUSG00000087403.2|RIKEN cDNA 2900056M20 gene 	ENSMUST00000135115.1|2900056M20Rik|ENSMUSG00000087403.2|RIKEN cDNA 2900056M20 gene 	ENSMUST00000149098.1|2900056M20Rik|ENSMUSG00000087403.2|RIKEN cDNA 2900056M20 gene
mm10_v2_chrX_-_136203637_136203926	0.132626	Bhlhe40	ENSMUST00000151592.1|Tceal5|ENSMUSG00000054034.4|transcription elongation factor A (SII)-like 5 	ENSMUST00000131510.1|Tceal5|ENSMUSG00000054034.4|transcription elongation factor A (SII)-like 5 	ENSMUST00000066819.4|Tceal5|ENSMUSG00000054034.4|transcription elongation factor A (SII)-like 5
mm10_v2_chr3_-_95882193_95882231	0.123135	Bhlhe40	ENSMUST00000159863.1|Gm129|ENSMUSG00000038550.4|predicted gene 129 	ENSMUST00000159739.1|Gm129|ENSMUSG00000038550.4|predicted gene 129 	ENSMUST00000036418.3|Gm129|ENSMUSG00000038550.4|predicted gene 129
mm10_v2_chr7_+_27195781_27195885	0.122162	Bhlhe40	ENSMUST00000108379.1|BC024978|ENSMUSG00000078786.3|cDNA sequence BC024978 	ENSMUST00000179391.1|BC024978|ENSMUSG00000078786.3|cDNA sequence BC024978
mm10_v2_chr4_-_118489755_118489777	0.116029	Bhlhe40	ENSMUST00000184261.1|Tie1|ENSMUSG00000033191.8|tyrosine kinase with immunoglobulin-like and EGF-like domains 1
mm10_v2_chr2_+_156840966_156841017	0.113025	Bhlhe40	ENSMUST00000109564.1|Tgif2|ENSMUSG00000062175.7|TGFB-induced factor homeobox 2
mm10_v2_chr4_-_118490030_118490063	0.108406	Bhlhe40	ENSMUST00000047421.5|Tie1|ENSMUSG00000033191.8|tyrosine kinase with immunoglobulin-like and EGF-like domains 1
mm10_v2_chr9_-_44361625_44361670	0.104944	Bhlhe40	ENSMUST00000034644.8|Vps11|ENSMUSG00000032127.8|vacuolar protein sorting 11 (yeast)
mm10_v2_chrX_-_135210672_135210700	0.103426	Bhlhe40	ENSMUST00000033783.1|Tceal6|ENSMUSG00000031409.1|transcription elongation factor A (SII)-like 6
mm10_v2_chr3_+_96727611_96727620	0.102522	Bhlhe40	ENSMUST00000029740.9|Rnf115|ENSMUSG00000028098.9|ring finger protein 115
mm10_v2_chr4_-_137048695_137048807	0.101572	Bhlhe40	ENSMUST00000049583.7|Zbtb40|ENSMUSG00000060862.9|zinc finger and BTB domain containing 40
mm10_v2_chr1_+_166254095_166254156	0.0996692	Bhlhe40	ENSMUST00000111416.1|Ildr2|ENSMUSG00000040612.8|immunoglobulin-like domain containing receptor 2
mm10_v2_chr11_-_110095974_110096043	0.0968631	Bhlhe40	ENSMUST00000100287.2|Abca8a|ENSMUSG00000041828.9|ATP-binding cassette, sub-family A (ABC1), member 8a
mm10_v2_chr11_-_110095937_110095969	0.0938294	Bhlhe40	ENSMUST00000106664.3|Abca8a|ENSMUSG00000041828.9|ATP-binding cassette, sub-family A (ABC1), member 8a 	ENSMUST00000046223.7|Abca8a|ENSMUSG00000041828.9|ATP-binding cassette, sub-family A (ABC1), member 8a 	ENSMUST00000106662.1|Abca8a|ENSMUSG00000041828.9|ATP-binding cassette, sub-family A (ABC1), member 8a
mm10_v2_chr6_+_72097561_72097630	0.0916918	Bhlhe40	ENSMUST00000069994.4|St3gal5|ENSMUSG00000056091.6|ST3 beta-galactoside alpha-2,3-sialyltransferase 5 	ENSMUST00000114112.1|St3gal5|ENSMUSG00000056091.6|ST3 beta-galactoside alpha-2,3-sialyltransferase 5
mm10_v2_chr7_-_90475971_90476003	0.0874498	Bhlhe40	ENSMUST00000032843.7|Tmem126b|ENSMUSG00000030614.7|transmembrane protein 126B
mm10_v2_chr8_+_111033890_111033932	0.0817359	Bhlhe40	ENSMUST00000034441.7|Aars|ENSMUSG00000031960.8|alanyl-tRNA synthetase
mm10_v2_chr13_-_48625571_48625594	0.0749762	Bhlhe40	ENSMUST00000035824.9|Ptpdc1|ENSMUSG00000038042.9|protein tyrosine phosphatase domain containing 1
mm10_v2_chr9_+_59539643_59539717	0.0739151	Bhlhe40	ENSMUST00000026262.6|Hexa|ENSMUSG00000025232.7|hexosaminidase A
mm10_v2_chr10_-_80139347_80139370	0.0728629	Bhlhe40	ENSMUST00000105369.1|Dos|ENSMUSG00000035640.12|downstream of Stk11
mm10_v2_chr18_-_20896078_20896078	0.0718912	Bhlhe40	ENSMUST00000025177.6|Trappc8|ENSMUSG00000033382.7|trafficking protein particle complex 8 	ENSMUST00000097658.1|Trappc8|ENSMUSG00000033382.7|trafficking protein particle complex 8
mm10_v2_chr8_+_75033673_75033702	0.071153	Bhlhe40	ENSMUST00000078847.5|Tom1|ENSMUSG00000042870.8|target of myb1 homolog (chicken) 	ENSMUST00000165630.1|Tom1|ENSMUSG00000042870.8|target of myb1 homolog (chicken)
mm10_v2_chr2_+_166805506_166805605	0.0648724	Bhlhe40	ENSMUST00000099078.3|Arfgef2|ENSMUSG00000074582.4|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
mm10_v2_chr7_-_82648469_82648545	0.0630018	Bhlhe40	ENSMUST00000056728.4|Fam154b|ENSMUSG00000038570.8|family with sequence similarity 154, member B
mm10_v2_chr16_+_5233615_5233653	0.0620219	Bhlhe40	ENSMUST00000100196.2|Alg1|ENSMUSG00000039427.8|asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase) 	ENSMUST00000049207.8|Alg1|ENSMUSG00000039427.8|asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)
mm10_v2_chr2_+_84839395_84839424	0.0599278	Bhlhe40	ENSMUST00000146816.1|Slc43a1|ENSMUSG00000027075.10|solute carrier family 43, member 1 	ENSMUST00000028469.7|Slc43a1|ENSMUSG00000027075.10|solute carrier family 43, member 1
mm10_v2_chr11_+_55204319_55204386	0.0585538	Bhlhe40	ENSMUST00000108872.2|Slc36a1|ENSMUSG00000020261.9|solute carrier family 36 (proton/amino acid symporter), member 1 	ENSMUST00000147506.1|Slc36a1|ENSMUSG00000020261.9|solute carrier family 36 (proton/amino acid symporter), member 1 	ENSMUST00000020499.7|Slc36a1|ENSMUSG00000020261.9|solute carrier family 36 (proton/amino acid symporter), member 1
mm10_v2_chr10_+_79854618_79854640	0.056066	Bhlhe40	ENSMUST00000165704.1|Ptbp1|ENSMUSG00000006498.10|polypyrimidine tract binding protein 1
mm10_v2_chr10_+_79854658_79854674	0.055724	Bhlhe40	ENSMUST00000171599.1|Ptbp1|ENSMUSG00000006498.10|polypyrimidine tract binding protein 1 	ENSMUST00000095457.4|Ptbp1|ENSMUSG00000006498.10|polypyrimidine tract binding protein 1
mm10_v2_chr5_-_91962715_91962740	0.0539906	Bhlhe40	ENSMUST00000169948.1|Rchy1|ENSMUSG00000029397.9|ring finger and CHY zinc finger domain containing 1
mm10_v2_chr7_+_128744870_128745020	0.0517186	Bhlhe40	ENSMUST00000042942.8|Sec23ip|ENSMUSG00000055319.7|Sec23 interacting protein
mm10_v2_chr10_+_78574492_78574545	0.0512701	Bhlhe40	ENSMUST00000105384.3|Ilvbl|ENSMUSG00000032763.10|ilvB (bacterial acetolactate synthase)-like
mm10_v2_chr1_+_155158703_155158776	0.0504196	Bhlhe40	ENSMUST00000027743.7|Stx6|ENSMUSG00000026470.9|syntaxin 6
mm10_v2_chr16_+_5050012_5050122	0.0501077	Bhlhe40	ENSMUST00000052449.5|Ubn1|ENSMUSG00000039473.7|ubinuclein 1
mm10_v2_chr12_-_91590009_91590056	0.0469376	Bhlhe40	ENSMUST00000021345.6|Gtf2a1|ENSMUSG00000020962.7|general transcription factor II A, 1
mm10_v2_chr18_+_31609512_31609512	0.0467487	Bhlhe40	ENSMUST00000164667.1|B930094E09Rik|ENSMUSG00000092124.1|RIKEN cDNA B930094E09 gene
mm10_v2_chr16_-_44139630_44139766	0.0437888	Bhlhe40	ENSMUST00000137557.1|Atp6v1a|ENSMUSG00000052459.7|ATPase, H+ transporting, lysosomal V1 subunit A 	ENSMUST00000147025.1|Atp6v1a|ENSMUSG00000052459.7|ATPase, H+ transporting, lysosomal V1 subunit A
mm10_v2_chr1_-_136960427_136960494	0.0427389	Bhlhe40	ENSMUST00000027649.7|Nr5a2|ENSMUSG00000026398.8|nuclear receptor subfamily 5, group A, member 2
mm10_v2_chr7_+_35802593_35802593	0.039678	Bhlhe40	ENSMUST00000052454.2|E130304I02Rik|ENSMUSG00000044997.2|RIKEN cDNA E130304I02 gene
mm10_v2_chr19_-_33392255_33392300	0.0388743	Bhlhe40	ENSMUST00000096114.5|Rnls|ENSMUSG00000071573.7|renalase, FAD-dependent amine oxidase 	ENSMUST00000163093.1|Rnls|ENSMUSG00000071573.7|renalase, FAD-dependent amine oxidase
mm10_v2_chr5_+_65199691_65199735	0.0366814	Bhlhe40	ENSMUST00000041892.8|Wdr19|ENSMUSG00000037890.9|WD repeat domain 19
mm10_v2_chr10_+_41519493_41519516	0.0360555	Bhlhe40	ENSMUST00000019962.8|Cd164|ENSMUSG00000019818.9|CD164 antigen
mm10_v2_chr2_+_121449362_121449393	0.0344447	Bhlhe40	ENSMUST00000110615.1|Serf2|ENSMUSG00000074884.6|small EDRK-rich factor 2 	ENSMUST00000099475.5|Serf2|ENSMUSG00000074884.6|small EDRK-rich factor 2
mm10_v2_chr17_+_33824591_33824644	0.0313018	Bhlhe40	ENSMUST00000048249.6|Ndufa7|ENSMUSG00000041881.6|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)
mm10_v2_chr8_-_84846860_84846934	0.0310514	Bhlhe40	ENSMUST00000003912.6|Calr|ENSMUSG00000003814.8|calreticulin
mm10_v2_chr10_-_18023229_18023265	0.0307515	Bhlhe40	ENSMUST00000020002.7|Abracl|ENSMUSG00000078453.2|ABRA C-terminal like
mm10_v2_chr16_+_8830093_8830104	0.0294932	Bhlhe40	ENSMUST00000023150.5|1810013L24Rik|ENSMUSG00000022507.5|RIKEN cDNA 1810013L24 gene
mm10_v2_chr2_-_30286312_30286354	0.0280935	Bhlhe40	ENSMUST00000100219.3|Dolk|ENSMUSG00000075419.3|dolichol kinase
mm10_v2_chr9_-_13827029_13827129	0.0277106	Bhlhe40	ENSMUST00000148086.1|Cep57|ENSMUSG00000031922.6|centrosomal protein 57 	ENSMUST00000034398.5|Cep57|ENSMUSG00000031922.6|centrosomal protein 57
mm10_v2_chr3_-_107333289_107333289	0.0272689	Bhlhe40	ENSMUST00000061772.9|Rbm15|ENSMUSG00000048109.9|RNA binding motif protein 15
mm10_v2_chr1_+_5083105_5083173	0.025525	Bhlhe40	ENSMUST00000044369.7|Atp6v1h|ENSMUSG00000033793.7|ATPase, H+ transporting, lysosomal V1 subunit H
mm10_v2_chr14_-_50930803_50930878	0.0233314	Bhlhe40	ENSMUST00000160538.1|Tmem55b|ENSMUSG00000035953.7|transmembrane protein 55b 	ENSMUST00000162957.1|Tmem55b|ENSMUSG00000035953.7|transmembrane protein 55b 	ENSMUST00000161166.1|Tmem55b|ENSMUSG00000035953.7|transmembrane protein 55b 	ENSMUST00000160835.1|Tmem55b|ENSMUSG00000035953.7|transmembrane protein 55b 	ENSMUST00000049312.7|Tmem55b|ENSMUSG00000035953.7|transmembrane protein 55b
mm10_v2_chr11_+_49203465_49203524	0.0218599	Bhlhe40	ENSMUST00000150284.1|Zfp62|ENSMUSG00000046311.7|zinc finger protein 62 	ENSMUST00000109197.1|Zfp62|ENSMUSG00000046311.7|zinc finger protein 62 	ENSMUST00000151228.1|Zfp62|ENSMUSG00000046311.7|zinc finger protein 62
mm10_v2_chrX_-_113185485_113185522	0.0212189	Bhlhe40	ENSMUST00000026607.8|Chm|ENSMUSG00000025531.8|choroidermia 	ENSMUST00000113388.2|Chm|ENSMUSG00000025531.8|choroidermia
mm10_v2_chr10_-_62486575_62486604	0.0211257	Bhlhe40	ENSMUST00000092473.3|Vps26a|ENSMUSG00000020078.9|vacuolar protein sorting 26 homolog A (yeast)
mm10_v2_chr6_+_116338013_116338083	0.0206434	Bhlhe40	ENSMUST00000079012.6|March8|ENSMUSG00000025702.9|membrane-associated ring finger (C3HC4) 8 	ENSMUST00000101032.3|March8|ENSMUSG00000025702.9|membrane-associated ring finger (C3HC4) 8
mm10_v2_chr8_+_3500451_3500524	0.0204177	Bhlhe40	ENSMUST00000004683.6|Mcoln1|ENSMUSG00000004567.9|mucolipin 1 	ENSMUST00000160338.1|Mcoln1|ENSMUSG00000004567.9|mucolipin 1
mm10_v2_chr5_-_91963068_91963105	0.0182246	Bhlhe40	ENSMUST00000031345.8|Rchy1|ENSMUSG00000029397.9|ring finger and CHY zinc finger domain containing 1
mm10_v2_chr18_-_31609893_31609927	0.0178437	Bhlhe40	ENSMUST00000060396.6|Slc25a46|ENSMUSG00000024259.8|solute carrier family 25, member 46
mm10_v2_chr9_+_108002501_108002680	0.0165877	Bhlhe40	ENSMUST00000035214.4|Ip6k1|ENSMUSG00000032594.5|inositol hexaphosphate kinase 1 	ENSMUST00000175874.1|Ip6k1|ENSMUSG00000032594.5|inositol hexaphosphate kinase 1
mm10_v2_chr11_+_75348433_75348560	0.0156585	Bhlhe40	ENSMUST00000044530.2|Smyd4|ENSMUSG00000018809.2|SET and MYND domain containing 4
mm10_v2_chr11_-_75454656_75454721	0.0149889	Bhlhe40	ENSMUST00000173320.1|Wdr81|ENSMUSG00000045374.12|WD repeat domain 81
mm10_v2_chr8_+_41239718_41239767	0.0149021	Bhlhe40	ENSMUST00000045218.7|Pcm1|ENSMUSG00000031592.9|pericentriolar material 1
mm10_v2_chr5_+_104046980_104047154	0.0144328	Bhlhe40	ENSMUST00000134313.1|Nudt9|ENSMUSG00000029310.7|nudix (nucleoside diphosphate linked moiety X)-type motif 9
mm10_v2_chr5_-_123572976_123573031	0.0137936	Bhlhe40	ENSMUST00000031388.8|Vps33a|ENSMUSG00000029434.8|vacuolar protein sorting 33A (yeast)
mm10_v2_chr3_-_95882031_95882074	0.0114733	Bhlhe40	ENSMUST00000161994.1|Gm129|ENSMUSG00000038550.4|predicted gene 129
mm10_v2_chr11_+_49203285_49203298	0.0105012	Bhlhe40	ENSMUST00000109198.1|Zfp62|ENSMUSG00000046311.7|zinc finger protein 62 	ENSMUST00000137061.2|Zfp62|ENSMUSG00000046311.7|zinc finger protein 62
mm10_v2_chr1_+_152766540_152766551	0.0104315	Bhlhe40	ENSMUST00000077755.5|Arpc5|ENSMUSG00000008475.7|actin related protein 2/3 complex, subunit 5 	ENSMUST00000097536.4|Arpc5|ENSMUSG00000008475.7|actin related protein 2/3 complex, subunit 5
mm10_v2_chr5_-_72168142_72168199	0.00830425	Bhlhe40	ENSMUST00000013693.6|Commd8|ENSMUSG00000029213.7|COMM domain containing 8
mm10_v2_chr3_-_95106779_95106897	0.00774317	Bhlhe40	ENSMUST00000005768.7|Pip5k1a|ENSMUSG00000028126.10|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha 	ENSMUST00000107232.2|Pip5k1a|ENSMUSG00000028126.10|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha 	ENSMUST00000107236.2|Pip5k1a|ENSMUSG00000028126.10|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
mm10_v2_chr11_+_97450136_97450180	0.00769331	Bhlhe40	ENSMUST00000107601.1|Arhgap23|ENSMUSG00000049807.10|Rho GTPase activating protein 23
mm10_v2_chr4_-_119422355_119422420	0.00645701	Bhlhe40	ENSMUST00000106316.1|Ppcs|ENSMUSG00000028636.8|phosphopantothenoylcysteine synthetase 	ENSMUST00000030385.6|Ppcs|ENSMUSG00000028636.8|phosphopantothenoylcysteine synthetase
mm10_v2_chr16_-_44139196_44139305	0.00607951	Bhlhe40	ENSMUST00000063661.6|Atp6v1a|ENSMUSG00000052459.7|ATPase, H+ transporting, lysosomal V1 subunit A 	ENSMUST00000114666.2|Atp6v1a|ENSMUSG00000052459.7|ATPase, H+ transporting, lysosomal V1 subunit A
mm10_v2_chr2_-_37703845_37703885	0.00359709	Bhlhe40	ENSMUST00000155237.1|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr10_-_62486772_62486805	0.00335893	Bhlhe40	ENSMUST00000105447.3|Vps26a|ENSMUSG00000020078.9|vacuolar protein sorting 26 homolog A (yeast)
mm10_v2_chr11_-_70239794_70239860	0.0033434	Bhlhe40	ENSMUST00000040428.3|Rnasek|ENSMUSG00000093989.1|ribonuclease, RNase K
mm10_v2_chr1_-_152766281_152766319	0.00251687	Bhlhe40	ENSMUST00000111859.1|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1 	ENSMUST00000148865.1|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1
mm10_v2_chrX_-_136068236_136068236	0.00234506	Bhlhe40	ENSMUST00000049130.7|Bex2|ENSMUSG00000042750.7|brain expressed X-linked 2
mm10_v2_chr14_-_50924626_50924896	0.000931429	Bhlhe40	ENSMUST00000160375.1|Osgep|ENSMUSG00000006289.8|O-sialoglycoprotein endopeptidase 	ENSMUST00000162177.1|Osgep|ENSMUSG00000006289.8|O-sialoglycoprotein endopeptidase 	ENSMUST00000159292.1|Osgep|ENSMUSG00000006289.8|O-sialoglycoprotein endopeptidase
mm10_v2_chr9_-_13826946_13826972	0.000583569	Bhlhe40	ENSMUST00000147115.1|Cep57|ENSMUSG00000031922.6|centrosomal protein 57
mm10_v2_chr16_-_44139003_44139026	0.000321884	Bhlhe40	ENSMUST00000124102.1|Atp6v1a|ENSMUSG00000052459.7|ATPase, H+ transporting, lysosomal V1 subunit A
mm10_v2_chr6_+_17694005_17694032	9.35461e-05	Bhlhe40	ENSMUST00000081635.6|St7|ENSMUSG00000029534.11|suppression of tumorigenicity 7 	ENSMUST00000052113.5|St7|ENSMUSG00000029534.11|suppression of tumorigenicity 7
mm10_v2_chr3_-_95106907_95106930	2.58882e-05	Bhlhe40	ENSMUST00000107233.2|Pip5k1a|ENSMUSG00000028126.10|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
