mm10_v2_chr4_+_101419277_101419332	0.104453	GGCAAGA	ENSMUST00000102780.1|Ak4|ENSMUSG00000028527.12|adenylate kinase 4 	ENSMUST00000106946.1|Ak4|ENSMUSG00000028527.12|adenylate kinase 4 	ENSMUST00000106945.1|Ak4|ENSMUSG00000028527.12|adenylate kinase 4
mm10_v2_chr10_-_69352886_69352938	0.0967416	GGCAAGA	ENSMUST00000119827.1|Cdk1|ENSMUSG00000019942.6|cyclin-dependent kinase 1 	ENSMUST00000020099.5|Cdk1|ENSMUSG00000019942.6|cyclin-dependent kinase 1
mm10_v2_chr5_+_30711564_30711586	0.0584604	GGCAAGA	ENSMUST00000114729.1|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5
mm10_v2_chr9_+_83548309_83548338	0.0437544	GGCAAGA	ENSMUST00000113215.3|Sh3bgrl2|ENSMUSG00000032261.10|SH3 domain binding glutamic acid-rich protein like 2
mm10_v2_chr15_+_82274935_82275034	0.04351	GGCAAGA	ENSMUST00000023095.6|Sept3|ENSMUSG00000022456.9|septin 3
mm10_v2_chr4_+_136172367_136172395	0.0396315	GGCAAGA	ENSMUST00000061721.5|E2f2|ENSMUSG00000018983.9|E2F transcription factor 2
mm10_v2_chr18_-_14682756_14682914	0.033851	GGCAAGA	ENSMUST00000040964.6|Ss18|ENSMUSG00000037013.9|synovial sarcoma translocation, Chromosome 18 	ENSMUST00000092041.3|Ss18|ENSMUSG00000037013.9|synovial sarcoma translocation, Chromosome 18 	ENSMUST00000040924.7|Ss18|ENSMUSG00000037013.9|synovial sarcoma translocation, Chromosome 18
mm10_v2_chr4_+_17853451_17853474	0.0313864	GGCAAGA	ENSMUST00000029881.3|Mmp16|ENSMUSG00000028226.9|matrix metallopeptidase 16
mm10_v2_chr11_-_78165521_78165589	0.0313031	GGCAAGA	ENSMUST00000017530.3|Traf4|ENSMUSG00000017386.4|TNF receptor associated factor 4
mm10_v2_chr14_-_67072465_67072476	0.030796	GGCAAGA	ENSMUST00000089230.5|Ppp2r2a|ENSMUSG00000022052.8|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform
mm10_v2_chr3_+_145987835_145987901	0.0306411	GGCAAGA	ENSMUST00000039517.6|Syde2|ENSMUSG00000036863.7|synapse defective 1, Rho GTPase, homolog 2 (C. elegans)
mm10_v2_chr8_-_70766654_70766671	0.0282149	GGCAAGA	ENSMUST00000034299.5|Ifi30|ENSMUSG00000031838.7|interferon gamma inducible protein 30
mm10_v2_chrX_-_142966709_142966734	0.0259558	GGCAAGA	ENSMUST00000041317.2|Ammecr1|ENSMUSG00000042225.3|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
mm10_v2_chr17_+_47630690_47630690	0.0256707	GGCAAGA	ENSMUST00000024779.8|Usp49|ENSMUSG00000090115.1|ubiquitin specific peptidase 49
mm10_v2_chr5_+_76840597_76840637	0.0234786	GGCAAGA	ENSMUST00000120639.2|C530008M17Rik|ENSMUSG00000036377.12|RIKEN cDNA C530008M17 gene 	ENSMUST00000163347.1|C530008M17Rik|ENSMUSG00000036377.12|RIKEN cDNA C530008M17 gene 	ENSMUST00000121851.1|C530008M17Rik|ENSMUSG00000036377.12|RIKEN cDNA C530008M17 gene
mm10_v2_chr11_+_20543307_20543336	0.0231071	GGCAAGA	ENSMUST00000093292.4|Sertad2|ENSMUSG00000049800.7|SERTA domain containing 2
mm10_v2_chr12_-_54203860_54203887	0.0228088	GGCAAGA	ENSMUST00000039516.3|Egln3|ENSMUSG00000035105.5|EGL nine homolog 3 (C. elegans)
mm10_v2_chr4_-_91372028_91372069	0.0223425	GGCAAGA	ENSMUST00000107110.1|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000008633.8|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000107118.1|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chr5_+_143464493_143464536	0.0217095	GGCAAGA	ENSMUST00000045593.8|Daglb|ENSMUSG00000039206.10|diacylglycerol lipase, beta
mm10_v2_chr1_-_165934900_165935036	0.02126	GGCAAGA	ENSMUST00000069609.5|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111427.2|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111426.4|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr12_+_84996309_84996419	0.0211492	GGCAAGA	ENSMUST00000168977.1|Ylpm1|ENSMUSG00000021244.9|YLP motif containing 1 	ENSMUST00000021670.8|Ylpm1|ENSMUSG00000021244.9|YLP motif containing 1
mm10_v2_chr2_-_53191214_53191284	0.0202208	GGCAAGA	ENSMUST00000076313.6|Prpf40a|ENSMUSG00000061136.7|PRP40 pre-mRNA processing factor 40 homolog A (yeast) 	ENSMUST00000125243.1|Prpf40a|ENSMUSG00000061136.7|PRP40 pre-mRNA processing factor 40 homolog A (yeast)
mm10_v2_chr3_+_90341654_90341654	0.0201141	GGCAAGA	ENSMUST00000049382.4|Gatad2b|ENSMUSG00000042390.5|GATA zinc finger domain containing 2B
mm10_v2_chr4_-_133753611_133753666	0.0194657	GGCAAGA	ENSMUST00000145664.2|Arid1a|ENSMUSG00000007880.10|AT rich interactive domain 1A (SWI-like) 	ENSMUST00000105897.3|Arid1a|ENSMUSG00000007880.10|AT rich interactive domain 1A (SWI-like)
mm10_v2_chr2_+_27515157_27515217	0.0180746	GGCAAGA	ENSMUST00000113952.3|Wdr5|ENSMUSG00000026917.9|WD repeat domain 5
mm10_v2_chr4_+_106561027_106561038	0.0177064	GGCAAGA	ENSMUST00000047973.3|Dhcr24|ENSMUSG00000034926.3|24-dehydrocholesterol reductase
mm10_v2_chr11_+_77686155_77686179	0.0172816	GGCAAGA	ENSMUST00000100802.4|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2 	ENSMUST00000181023.1|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2
mm10_v2_chr9_+_106368594_106368640	0.0172282	GGCAAGA	ENSMUST00000172306.2|Dusp7|ENSMUSG00000053716.7|dual specificity phosphatase 7
mm10_v2_chr15_-_98607611_98607638	0.0170108	GGCAAGA	ENSMUST00000096224.4|Adcy6|ENSMUSG00000022994.8|adenylate cyclase 6
mm10_v2_chr13_+_54071815_54071859	0.0169969	GGCAAGA	ENSMUST00000021930.8|Sfxn1|ENSMUSG00000021474.8|sideroflexin 1
mm10_v2_chr16_+_44139821_44139900	0.0169186	GGCAAGA	ENSMUST00000159514.1|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000161326.1|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000063520.8|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000063542.7|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit
mm10_v2_chr6_-_18030435_18030585	0.0163448	GGCAAGA	ENSMUST00000010941.2|Wnt2|ENSMUSG00000010797.2|wingless-related MMTV integration site 2
mm10_v2_chr10_-_61452658_61452813	0.0161404	GGCAAGA	ENSMUST00000167087.1|Eif4ebp2|ENSMUSG00000020091.8|eukaryotic translation initiation factor 4E binding protein 2 	ENSMUST00000020288.7|Eif4ebp2|ENSMUSG00000020091.8|eukaryotic translation initiation factor 4E binding protein 2
mm10_v2_chr3_-_107696462_107696574	0.0155585	GGCAAGA	ENSMUST00000029490.8|Ahcyl1|ENSMUSG00000027893.8|S-adenosylhomocysteine hydrolase-like 1
mm10_v2_chr15_-_43869993_43870058	0.0153498	GGCAAGA	ENSMUST00000067469.4|Tmem74|ENSMUSG00000054409.4|transmembrane protein 74
mm10_v2_chr7_+_130577334_130577484	0.0151227	GGCAAGA	ENSMUST00000059145.7|Tacc2|ENSMUSG00000030852.9|transforming, acidic coiled-coil containing protein 2 	ENSMUST00000084513.4|Tacc2|ENSMUSG00000030852.9|transforming, acidic coiled-coil containing protein 2
mm10_v2_chr3_+_51415986_51416044	0.0150767	GGCAAGA	ENSMUST00000029303.7|Naa15|ENSMUSG00000063273.6|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm10_v2_chr2_-_69206133_69206144	0.014637	GGCAAGA	ENSMUST00000112320.1|Spc25|ENSMUSG00000005233.10|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
mm10_v2_chr9_-_21510181_21510203	0.0137715	GGCAAGA	ENSMUST00000034698.7|Tmed1|ENSMUSG00000032180.10|transmembrane emp24 domain containing 1
mm10_v2_chr7_-_98178254_98178274	0.0133522	GGCAAGA	ENSMUST00000040971.7|Capn5|ENSMUSG00000035547.8|calpain 5
mm10_v2_chr14_+_31251454_31251530	0.0131076	GGCAAGA	ENSMUST00000022458.4|Bap1|ENSMUSG00000021901.4|Brca1 associated protein 1
mm10_v2_chr12_+_117516479_117516534	0.0130626	GGCAAGA	ENSMUST00000109691.2|Rapgef5|ENSMUSG00000041992.8|Rap guanine nucleotide exchange factor (GEF) 5
mm10_v2_chr16_+_16896469_16896598	0.0128801	GGCAAGA	ENSMUST00000027373.9|Ppm1f|ENSMUSG00000026181.11|protein phosphatase 1F (PP2C domain containing)
mm10_v2_chr11_-_22982090_22982382	0.0127523	GGCAAGA	ENSMUST00000160826.1|RP23-242C19.7|ENSMUSG00000098650.1|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 (B3gnt2), transcript variant 2, mRNA 	ENSMUST00000093270.5|Commd1|ENSMUSG00000051355.12|COMM domain containing 1 	ENSMUST00000071068.8|Commd1|ENSMUSG00000051355.12|COMM domain containing 1 	ENSMUST00000159081.1|Commd1|ENSMUSG00000051355.12|COMM domain containing 1
mm10_v2_chr12_+_101975965_101976004	0.0127009	GGCAAGA	ENSMUST00000047357.8|Cpsf2|ENSMUSG00000041781.8|cleavage and polyadenylation specific factor 2
mm10_v2_chr2_-_125859139_125859221	0.0125723	GGCAAGA	ENSMUST00000110463.1|Cops2|ENSMUSG00000027206.7|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana) 	ENSMUST00000028635.5|Cops2|ENSMUSG00000027206.7|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)
mm10_v2_chr2_+_145167706_145167773	0.0125304	GGCAAGA	ENSMUST00000110007.1|Slc24a3|ENSMUSG00000063873.4|solute carrier family 24 (sodium/potassium/calcium exchanger), member 3
mm10_v2_chr4_+_129136948_129136999	0.01203	GGCAAGA	ENSMUST00000102600.3|Fndc5|ENSMUSG00000001334.9|fibronectin type III domain containing 5
mm10_v2_chr13_+_93308006_93308034	0.0118648	GGCAAGA	ENSMUST00000079086.6|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila)
mm10_v2_chr6_-_124415037_124415078	0.0114867	GGCAAGA	ENSMUST00000035861.5|Pex5|ENSMUSG00000005069.6|peroxisomal biogenesis factor 5 	ENSMUST00000112532.1|Pex5|ENSMUSG00000005069.6|peroxisomal biogenesis factor 5 	ENSMUST00000080557.5|Pex5|ENSMUSG00000005069.6|peroxisomal biogenesis factor 5
mm10_v2_chrX_-_73824938_73824977	0.0114503	GGCAAGA	ENSMUST00000114438.2|Pdzd4|ENSMUSG00000002006.6|PDZ domain containing 4 	ENSMUST00000002080.5|Pdzd4|ENSMUSG00000002006.6|PDZ domain containing 4
mm10_v2_chr7_-_63938862_63938933	0.0114481	GGCAAGA	ENSMUST00000063694.8|Klf13|ENSMUSG00000052040.9|Kruppel-like factor 13
mm10_v2_chr8_+_105605220_105605306	0.0107391	GGCAAGA	ENSMUST00000043531.8|Fam65a|ENSMUSG00000038604.8|family with sequence similarity 65, member A
mm10_v2_chr6_+_29917005_29917028	0.0101885	GGCAAGA	ENSMUST00000115224.2|Strip2|ENSMUSG00000039629.8|striatin interacting protein 2 	ENSMUST00000046028.6|Strip2|ENSMUSG00000039629.8|striatin interacting protein 2
mm10_v2_chr3_+_136670076_136670186	0.0101751	GGCAAGA	ENSMUST00000070198.7|Ppp3ca|ENSMUSG00000028161.11|protein phosphatase 3, catalytic subunit, alpha isoform
mm10_v2_chr3_-_94786469_94786492	0.00931304	GGCAAGA	ENSMUST00000107273.1|Cgn|ENSMUSG00000068876.8|cingulin
mm10_v2_chr9_-_45984816_45984871	0.00917297	GGCAAGA	ENSMUST00000172450.1|Pafah1b2|ENSMUSG00000003131.6|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2
mm10_v2_chr13_-_107022027_107022138	0.00910173	GGCAAGA	ENSMUST00000117539.1|Kif2a|ENSMUSG00000021693.13|kinesin family member 2A 	ENSMUST00000122233.1|Kif2a|ENSMUSG00000021693.13|kinesin family member 2A 	ENSMUST00000022204.9|Kif2a|ENSMUSG00000021693.13|kinesin family member 2A 	ENSMUST00000159772.1|Kif2a|ENSMUSG00000021693.13|kinesin family member 2A
mm10_v2_chr14_-_70351354_70351435	0.00884775	GGCAAGA	ENSMUST00000143153.1|Slc39a14|ENSMUSG00000022094.9|solute carrier family 39 (zinc transporter), member 14 	ENSMUST00000127000.1|Slc39a14|ENSMUSG00000022094.9|solute carrier family 39 (zinc transporter), member 14 	ENSMUST00000068044.7|Slc39a14|ENSMUSG00000022094.9|solute carrier family 39 (zinc transporter), member 14 	ENSMUST00000022688.3|Slc39a14|ENSMUSG00000022094.9|solute carrier family 39 (zinc transporter), member 14
mm10_v2_chr13_-_46727932_46728005	0.00879651	GGCAAGA	ENSMUST00000021803.9|Nup153|ENSMUSG00000021374.9|nucleoporin 153
mm10_v2_chr3_+_89520152_89520175	0.00845496	GGCAAGA	ENSMUST00000000811.7|Kcnn3|ENSMUSG00000000794.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
mm10_v2_chr9_+_32116040_32116136	0.00842478	GGCAAGA	ENSMUST00000174641.1|Arhgap32|ENSMUSG00000041444.8|Rho GTPase activating protein 32
mm10_v2_chr10_+_128377086_128377155	0.00840725	GGCAAGA	ENSMUST00000014642.3|Ankrd52|ENSMUSG00000014498.3|ankyrin repeat domain 52
mm10_v2_chr2_+_153741274_153741294	0.00815452	GGCAAGA	ENSMUST00000028981.8|Mapre1|ENSMUSG00000027479.8|microtubule-associated protein, RP/EB family, member 1
mm10_v2_chr6_-_59426279_59426345	0.00812377	GGCAAGA	ENSMUST00000051065.4|Gprin3|ENSMUSG00000045441.4|GPRIN family member 3
mm10_v2_chr14_-_52197216_52197267	0.00797635	GGCAAGA	ENSMUST00000046709.7|Supt16|ENSMUSG00000035726.7|suppressor of Ty 16
mm10_v2_chr11_-_23497867_23497962	0.00791242	GGCAAGA	ENSMUST00000128559.1|Ahsa2|ENSMUSG00000020288.7|AHA1, activator of heat shock protein ATPase 2 	ENSMUST00000147157.1|Ahsa2|ENSMUSG00000020288.7|AHA1, activator of heat shock protein ATPase 2 	ENSMUST00000109539.1|Ahsa2|ENSMUSG00000020288.7|AHA1, activator of heat shock protein ATPase 2
mm10_v2_chr2_-_33431324_33431324	0.00782718	GGCAAGA	ENSMUST00000113158.1|Zbtb34|ENSMUSG00000068966.4|zinc finger and BTB domain containing 34
mm10_v2_chr16_-_16146771_16146851	0.00773244	GGCAAGA	ENSMUST00000040248.7|Spidr|ENSMUSG00000041974.9|scaffolding protein involved i DNA repair
mm10_v2_chr9_+_52047150_52047163	0.00773083	GGCAAGA	ENSMUST00000163153.1|Rdx|ENSMUSG00000032050.10|radixin
mm10_v2_chr3_+_34020075_34020082	0.00772667	GGCAAGA	ENSMUST00000001620.8|Fxr1|ENSMUSG00000027680.9|fragile X mental retardation gene 1, autosomal homolog 	ENSMUST00000167354.1|Fxr1|ENSMUSG00000027680.9|fragile X mental retardation gene 1, autosomal homolog
mm10_v2_chr13_-_99516537_99516602	0.0074659	GGCAAGA	ENSMUST00000064762.4|Map1b|ENSMUSG00000052727.5|microtubule-associated protein 1B
mm10_v2_chr9_-_52168111_52168111	0.00725831	GGCAAGA	ENSMUST00000165519.1|Zc3h12c|ENSMUSG00000035164.7|zinc finger CCCH type containing 12C
mm10_v2_chr5_+_65537209_65537233	0.0072403	GGCAAGA	ENSMUST00000142407.1|Ube2k|ENSMUSG00000029203.10|ubiquitin-conjugating enzyme E2K
mm10_v2_chr11_-_103638862_103638893	0.00708562	GGCAAGA	ENSMUST00000107014.1|Lyzl6|ENSMUSG00000020945.7|lysozyme-like 6 	ENSMUST00000021328.7|Lyzl6|ENSMUSG00000020945.7|lysozyme-like 6
mm10_v2_chr15_-_93275151_93275178	0.00701644	GGCAAGA	ENSMUST00000057896.4|Gxylt1|ENSMUSG00000036197.9|glucoside xylosyltransferase 1 	ENSMUST00000049484.6|Gxylt1|ENSMUSG00000036197.9|glucoside xylosyltransferase 1
mm10_v2_chr15_+_44428073_44428174	0.00667751	GGCAAGA	ENSMUST00000060652.3|Eny2|ENSMUSG00000022338.6|enhancer of yellow 2 homolog (Drosophila)
mm10_v2_chr11_-_120991305_120991339	0.00664977	GGCAAGA	ENSMUST00000018274.3|Csnk1d|ENSMUSG00000025162.11|casein kinase 1, delta
mm10_v2_chr6_-_53068562_53068656	0.00646775	GGCAAGA	ENSMUST00000074541.5|Jazf1|ENSMUSG00000063568.5|JAZF zinc finger 1
mm10_v2_chr2_+_124610573_124610613	0.00618074	GGCAAGA	ENSMUST00000103239.3|Sema6d|ENSMUSG00000027200.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D 	ENSMUST00000103240.2|Sema6d|ENSMUSG00000027200.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm10_v2_chr6_-_13608011_13608100	0.00600855	GGCAAGA	ENSMUST00000031554.2|Tmem168|ENSMUSG00000029569.3|transmembrane protein 168
mm10_v2_chr19_+_27322539_27322592	0.00591571	GGCAAGA	ENSMUST00000056708.3|Kcnv2|ENSMUSG00000047298.3|potassium channel, subfamily V, member 2
mm10_v2_chr12_-_98901478_98901492	0.00575809	GGCAAGA	ENSMUST00000065716.6|Eml5|ENSMUSG00000051166.9|echinoderm microtubule associated protein like 5
mm10_v2_chr6_+_8948608_8948619	0.00565658	GGCAAGA	ENSMUST00000160300.1|Nxph1|ENSMUSG00000046178.3|neurexophilin 1
mm10_v2_chr14_-_69732510_69732581	0.00550052	GGCAAGA	ENSMUST00000036381.8|Chmp7|ENSMUSG00000034190.8|charged multivesicular body protein 7
mm10_v2_chr17_+_86167777_86167795	0.00548018	GGCAAGA	ENSMUST00000097275.2|Prkce|ENSMUSG00000045038.8|protein kinase C, epsilon
mm10_v2_chr12_+_111039334_111039400	0.00532777	GGCAAGA	ENSMUST00000084968.7|Rcor1|ENSMUSG00000037896.11|REST corepressor 1
mm10_v2_chr19_-_32388462_32388512	0.00518131	GGCAAGA	ENSMUST00000099514.3|Sgms1|ENSMUSG00000040451.11|sphingomyelin synthase 1
mm10_v2_chr4_-_141723401_141723436	0.005165	GGCAAGA	ENSMUST00000102484.4|Ddi2|ENSMUSG00000078515.3|DNA-damage inducible protein 2 	ENSMUST00000177592.1|Rsc1a1|ENSMUSG00000040715.11|regulatory solute carrier protein, family 1, member 1
mm10_v2_chr9_-_119322421_119322449	0.00474382	GGCAAGA	ENSMUST00000040853.4|Oxsr1|ENSMUSG00000036737.6|oxidative-stress responsive 1
mm10_v2_chr4_-_126429501_126429556	0.00457824	GGCAAGA	ENSMUST00000069097.6|Ago3|ENSMUSG00000028842.9|argonaute RISC catalytic subunit 3
mm10_v2_chr2_+_65845767_65845799	0.00457603	GGCAAGA	ENSMUST00000122912.1|Csrnp3|ENSMUSG00000044647.10|cysteine-serine-rich nuclear protein 3
mm10_v2_chr13_-_85288999_85289058	0.00455371	GGCAAGA	ENSMUST00000109552.2|Rasa1|ENSMUSG00000021549.7|RAS p21 protein activator 1
mm10_v2_chr7_-_100583072_100583124	0.00449496	GGCAAGA	ENSMUST00000152876.1|Mrpl48|ENSMUSG00000030706.10|mitochondrial ribosomal protein L48 	ENSMUST00000150042.1|Mrpl48|ENSMUSG00000030706.10|mitochondrial ribosomal protein L48
mm10_v2_chr16_+_42907563_42907684	0.00447781	GGCAAGA	ENSMUST00000151244.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000114694.2|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr9_-_27030010_27030114	0.00443114	GGCAAGA	ENSMUST00000034470.9|Vps26b|ENSMUSG00000031988.9|vacuolar protein sorting 26 homolog B (yeast)
mm10_v2_chr16_+_13671922_13671937	0.00426329	GGCAAGA	ENSMUST00000035426.5|3110001I22Rik|ENSMUSG00000079737.3|RIKEN cDNA 3110001I22 gene
mm10_v2_chr19_-_47171134_47171203	0.00424883	GGCAAGA	ENSMUST00000169692.1|Gm6970|ENSMUSG00000091230.1|predicted gene 6970
mm10_v2_chrX_-_165327376_165327421	0.00394204	GGCAAGA	ENSMUST00000058787.8|Glra2|ENSMUSG00000018589.8|glycine receptor, alpha 2 subunit
mm10_v2_chr5_-_33652296_33652327	0.00390417	GGCAAGA	ENSMUST00000151081.1|Slbp|ENSMUSG00000004642.7|stem-loop binding protein 	ENSMUST00000101354.3|Slbp|ENSMUSG00000004642.7|stem-loop binding protein
mm10_v2_chr4_-_14826582_14826589	0.00387754	GGCAAGA	ENSMUST00000117268.1|Otud6b|ENSMUSG00000040550.10|OTU domain containing 6B
mm10_v2_chr11_-_106193511_106193584	0.0038433	GGCAAGA	ENSMUST00000007444.7|Strada|ENSMUSG00000069631.8|STE20-related kinase adaptor alpha 	ENSMUST00000152008.1|Strada|ENSMUSG00000069631.8|STE20-related kinase adaptor alpha 	ENSMUST00000103072.3|Strada|ENSMUSG00000069631.8|STE20-related kinase adaptor alpha 	ENSMUST00000106867.1|Strada|ENSMUSG00000069631.8|STE20-related kinase adaptor alpha
mm10_v2_chr10_+_50895651_50895651	0.00352897	GGCAAGA	ENSMUST00000020071.3|Sim1|ENSMUSG00000019913.3|single-minded homolog 1 (Drosophila)
mm10_v2_chr2_+_102658640_102658669	0.00329335	GGCAAGA	ENSMUST00000080210.3|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm10_v2_chr6_-_32588192_32588213	0.00313628	GGCAAGA	ENSMUST00000115096.2|Plxna4|ENSMUSG00000029765.10|plexin A4
mm10_v2_chr2_-_60963192_60963251	0.00293798	GGCAAGA	ENSMUST00000028347.6|Rbms1|ENSMUSG00000026970.10|RNA binding motif, single stranded interacting protein 1
mm10_v2_chr6_+_4903298_4903346	0.00278385	GGCAAGA	ENSMUST00000035813.2|Ppp1r9a|ENSMUSG00000032827.9|protein phosphatase 1, regulatory (inhibitor) subunit 9A
mm10_v2_chr6_-_3763618_3763629	0.00258775	GGCAAGA	ENSMUST00000171613.1|Calcr|ENSMUSG00000023964.9|calcitonin receptor
mm10_v2_chr17_-_46487641_46487682	0.00248948	GGCAAGA	ENSMUST00000047034.8|Ttbk1|ENSMUSG00000015599.8|tau tubulin kinase 1
mm10_v2_chr3_+_152210458_152210534	0.00245762	GGCAAGA	ENSMUST00000166984.1|Fubp1|ENSMUSG00000028034.9|far upstream element (FUSE) binding protein 1 	ENSMUST00000106121.1|Fubp1|ENSMUSG00000028034.9|far upstream element (FUSE) binding protein 1
mm10_v2_chr1_+_60746358_60746427	0.00236808	GGCAAGA	ENSMUST00000027165.2|Cd28|ENSMUSG00000026012.2|CD28 antigen
mm10_v2_chr3_-_9610074_9610086	0.00227075	GGCAAGA	ENSMUST00000041124.7|Zfp704|ENSMUSG00000040209.7|zinc finger protein 704
mm10_v2_chr1_-_151428440_151428474	0.0020089	GGCAAGA	ENSMUST00000064771.5|Swt1|ENSMUSG00000052748.8|SWT1 RNA endoribonuclease homolog (S. cerevisiae)
mm10_v2_chr19_+_40831248_40831292	0.00197308	GGCAAGA	ENSMUST00000025983.6|Ccnj|ENSMUSG00000025010.7|cyclin J 	ENSMUST00000120057.1|Ccnj|ENSMUSG00000025010.7|cyclin J
mm10_v2_chr2_+_16356294_16356316	0.00192897	GGCAAGA	ENSMUST00000028081.6|Plxdc2|ENSMUSG00000026748.7|plexin domain containing 2
mm10_v2_chr17_+_26138661_26138950	0.0016536	GGCAAGA	ENSMUST00000074370.3|Axin1|ENSMUSG00000024182.10|axin 1 	ENSMUST00000118904.2|Axin1|ENSMUSG00000024182.10|axin 1 	ENSMUST00000163421.1|Axin1|ENSMUSG00000024182.10|axin 1
mm10_v2_chr15_+_25843264_25843280	0.00159715	GGCAAGA	ENSMUST00000022881.7|Fam134b|ENSMUSG00000022270.9|family with sequence similarity 134, member B
mm10_v2_chr9_+_45138437_45138462	0.00158847	GGCAAGA	ENSMUST00000060125.5|Scn4b|ENSMUSG00000046480.5|sodium channel, type IV, beta
mm10_v2_chr2_-_120353094_120353143	0.00134904	GGCAAGA	ENSMUST00000028752.7|Vps39|ENSMUSG00000027291.9|vacuolar protein sorting 39 (yeast) 	ENSMUST00000102501.3|Vps39|ENSMUSG00000027291.9|vacuolar protein sorting 39 (yeast)
mm10_v2_chr17_-_79896028_79896123	0.00133999	GGCAAGA	ENSMUST00000068282.5|Atl2|ENSMUSG00000059811.6|atlastin GTPase 2 	ENSMUST00000112437.1|Atl2|ENSMUSG00000059811.6|atlastin GTPase 2
mm10_v2_chr16_-_23225334_23225368	0.0012553	GGCAAGA	ENSMUST00000055369.4|BC106179|ENSMUSG00000045231.4|cDNA sequence BC106179
mm10_v2_chr12_-_69892989_69893103	0.00105559	GGCAAGA	ENSMUST00000110567.1|Map4k5|ENSMUSG00000034761.9|mitogen-activated protein kinase kinase kinase kinase 5 	ENSMUST00000171211.1|Map4k5|ENSMUSG00000034761.9|mitogen-activated protein kinase kinase kinase kinase 5
mm10_v2_chr4_-_129335324_129335377	0.000768513	GGCAAGA	ENSMUST00000102598.3|Rbbp4|ENSMUSG00000057236.10|retinoblastoma binding protein 4
mm10_v2_chr7_-_12775658_12775658	0.0007265	GGCAAGA	ENSMUST00000046245.5|Zscan18|ENSMUSG00000070822.4|zinc finger and SCAN domain containing 18
mm10_v2_chrX_+_151344171_151344197	0.000671083	GGCAAGA	ENSMUST00000073364.5|Fam120c|ENSMUSG00000025262.8|family with sequence similarity 120, member C
mm10_v2_chr15_+_68928414_68928421	0.000638248	GGCAAGA	ENSMUST00000022954.6|Khdrbs3|ENSMUSG00000022332.7|KH domain containing, RNA binding, signal transduction associated 3
mm10_v2_chr2_-_179976646_179976665	0.000573183	GGCAAGA	ENSMUST00000041618.7|Taf4a|ENSMUSG00000039117.10|TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr10_-_89621253_89621275	0.000550552	GGCAAGA	ENSMUST00000020102.7|Slc17a8|ENSMUSG00000019935.10|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8
mm10_v2_chr18_+_64887690_64887762	0.00053016	GGCAAGA	ENSMUST00000163516.1|Nedd4l|ENSMUSG00000024589.9|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm10_v2_chr8_+_107150621_107150690	0.000527038	GGCAAGA	ENSMUST00000034400.3|Cyb5b|ENSMUSG00000031924.3|cytochrome b5 type B
mm10_v2_chr7_-_35754394_35754454	0.000492624	GGCAAGA	ENSMUST00000051377.8|Dpy19l3|ENSMUSG00000043671.8|dpy-19-like 3 (C. elegans)
mm10_v2_chr8_-_105979413_105979444	0.000473891	GGCAAGA	ENSMUST00000034371.7|Dpep3|ENSMUSG00000031898.8|dipeptidase 3
mm10_v2_chr8_-_4325096_4325110	0.000448971	GGCAAGA	ENSMUST00000098950.4|Elavl1|ENSMUSG00000040028.9|ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)
mm10_v2_chr14_-_79771305_79771318	0.000365846	GGCAAGA	ENSMUST00000039568.5|Pcdh8|ENSMUSG00000036422.5|protocadherin 8
mm10_v2_chr11_+_75531690_75531743	8.47894e-05	GGCAAGA	ENSMUST00000149727.1|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2 	ENSMUST00000042561.7|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2 	ENSMUST00000108433.1|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2 	ENSMUST00000143035.1|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2
mm10_v2_chr9_+_111311674_111311758	6.74443e-05	GGCAAGA	ENSMUST00000078626.3|Trank1|ENSMUSG00000062296.4|tetratricopeptide repeat and ankyrin repeat containing 1
mm10_v2_chr7_+_97579868_97579901	4.18651e-05	GGCAAGA	ENSMUST00000042399.7|Rsf1|ENSMUSG00000035623.8|remodeling and spacing factor 1 	ENSMUST00000107153.1|Rsf1|ENSMUSG00000035623.8|remodeling and spacing factor 1
