mm10_v2_chr1_+_195017399_195017431	2.19326	Gli3_Zic1	ENSMUST00000181273.1|A330023F24Rik|ENSMUSG00000096929.1|RIKEN cDNA A330023F24 gene
mm10_v2_chr7_-_100656953_100657103	1.85704	Gli3_Zic1	ENSMUST00000107046.1|Plekhb1|ENSMUSG00000030701.10|pleckstrin homology domain containing, family B (evectins) member 1 	ENSMUST00000107045.1|Plekhb1|ENSMUSG00000030701.10|pleckstrin homology domain containing, family B (evectins) member 1 	ENSMUST00000139708.1|Plekhb1|ENSMUSG00000030701.10|pleckstrin homology domain containing, family B (evectins) member 1
mm10_v2_chrX_-_7574120_7574312	1.79446	Gli3_Zic1	ENSMUST00000045924.7|Ppp1r3f|ENSMUSG00000039556.10|protein phosphatase 1, regulatory (inhibitor) subunit 3F 	ENSMUST00000115742.2|Ppp1r3f|ENSMUSG00000039556.10|protein phosphatase 1, regulatory (inhibitor) subunit 3F 	ENSMUST00000150787.1|Ppp1r3f|ENSMUSG00000039556.10|protein phosphatase 1, regulatory (inhibitor) subunit 3F
mm10_v2_chr11_+_72999069_72999103	1.73419	Gli3_Zic1	ENSMUST00000021141.7|P2rx1|ENSMUSG00000020787.8|purinergic receptor P2X, ligand-gated ion channel, 1
mm10_v2_chr5_+_30588078_30588171	1.59639	Gli3_Zic1	ENSMUST00000066295.2|Kcnk3|ENSMUSG00000049265.6|potassium channel, subfamily K, member 3
mm10_v2_chr14_+_55560480_55560533	1.5008	Gli3_Zic1	ENSMUST00000121622.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11 	ENSMUST00000143431.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11 	ENSMUST00000150481.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11
mm10_v2_chr6_+_30738044_30738059	1.31298	Gli3_Zic1	ENSMUST00000128398.1|Mest|ENSMUSG00000051855.9|mesoderm specific transcript 	ENSMUST00000163949.2|Mest|ENSMUSG00000051855.9|mesoderm specific transcript 	ENSMUST00000124665.1|Mest|ENSMUSG00000051855.9|mesoderm specific transcript
mm10_v2_chr7_-_101869012_101869023	1.30713	Gli3_Zic1	ENSMUST00000123321.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult)
mm10_v2_chr2_+_70562007_70562042	1.2643	Gli3_Zic1	ENSMUST00000094934.4|Gad1|ENSMUSG00000070880.4|glutamate decarboxylase 1
mm10_v2_chr14_+_55561060_55561071	1.22253	Gli3_Zic1	ENSMUST00000117701.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11
mm10_v2_chr11_+_93098404_93098437	1.20767	Gli3_Zic1	ENSMUST00000107859.1|Car10|ENSMUSG00000056158.8|carbonic anhydrase 10 	ENSMUST00000042943.6|Car10|ENSMUSG00000056158.8|carbonic anhydrase 10 	ENSMUST00000107861.1|Car10|ENSMUSG00000056158.8|carbonic anhydrase 10 	ENSMUST00000107858.2|Car10|ENSMUSG00000056158.8|carbonic anhydrase 10
mm10_v2_chr7_-_101868667_101868725	1.19651	Gli3_Zic1	ENSMUST00000150184.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult)
mm10_v2_chr9_+_50752758_50752894	1.18068	Gli3_Zic1	ENSMUST00000034562.7|Cryab|ENSMUSG00000032060.9|crystallin, alpha B
mm10_v2_chr14_+_55560904_55560974	1.17248	Gli3_Zic1	ENSMUST00000072530.4|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11 	ENSMUST00000128490.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11
mm10_v2_chr14_-_55560340_55560406	1.16083	Gli3_Zic1	ENSMUST00000066106.3|A730061H03Rik|ENSMUSG00000053588.3|RIKEN cDNA A730061H03 gene
mm10_v2_chr2_-_29253001_29253013	1.06534	Gli3_Zic1	ENSMUST00000071201.4|Ntng2|ENSMUSG00000035513.13|netrin G2
mm10_v2_chr8_-_22125030_22125073	1.03732	Gli3_Zic1	ENSMUST00000169834.1|Nek5|ENSMUSG00000037738.9|NIMA (never in mitosis gene a)-related expressed kinase 5
mm10_v2_chr8_+_76902277_76902476	1.01631	Gli3_Zic1	ENSMUST00000109912.1|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2 	ENSMUST00000128862.1|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2 	ENSMUST00000109911.1|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2
mm10_v2_chr19_-_38125258_38125321	0.991316	Gli3_Zic1	ENSMUST00000025951.6|Rbp4|ENSMUSG00000024990.6|retinol binding protein 4, plasma
mm10_v2_chr16_+_20733104_20733158	0.990315	Gli3_Zic1	ENSMUST00000115423.1|Chrd|ENSMUSG00000006958.7|chordin 	ENSMUST00000007171.6|Chrd|ENSMUSG00000006958.7|chordin
mm10_v2_chr2_+_35282380_35282442	0.909036	Gli3_Zic1	ENSMUST00000028239.6|Gsn|ENSMUSG00000026879.8|gelsolin
mm10_v2_chr11_+_87760533_87760587	0.902367	Gli3_Zic1	ENSMUST00000039627.5|Bzrap1|ENSMUSG00000034156.10|benzodiazepine receptor associated protein 1 	ENSMUST00000100644.3|Bzrap1|ENSMUSG00000034156.10|benzodiazepine receptor associated protein 1
mm10_v2_chr19_-_38124801_38124816	0.901702	Gli3_Zic1	ENSMUST00000112335.2|Rbp4|ENSMUSG00000024990.6|retinol binding protein 4, plasma
mm10_v2_chr11_+_101176041_101176041	0.890023	Gli3_Zic1	ENSMUST00000103109.3|Cntnap1|ENSMUSG00000017167.6|contactin associated protein-like 1
mm10_v2_chr8_+_76899772_76899828	0.85354	Gli3_Zic1	ENSMUST00000109913.2|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2
mm10_v2_chr15_-_95528228_95528266	0.850792	Gli3_Zic1	ENSMUST00000075275.2|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr8_-_90908415_90908415	0.767659	Gli3_Zic1	ENSMUST00000098517.1|Gm6658|ENSMUSG00000074171.1|predicted gene 6658
mm10_v2_chr4_+_54947976_54948054	0.745087	Gli3_Zic1	ENSMUST00000098070.3|Zfp462|ENSMUSG00000060206.5|zinc finger protein 462
mm10_v2_chr7_-_118443549_118443571	0.743813	Gli3_Zic1	ENSMUST00000081574.4|Syt17|ENSMUSG00000058420.5|synaptotagmin XVII
mm10_v2_chr11_-_94704499_94704499	0.74344	Gli3_Zic1	ENSMUST00000069852.1|Gm11541|ENSMUSG00000056008.1|predicted gene 11541
mm10_v2_chr11_+_115462464_115462506	0.741478	Gli3_Zic1	ENSMUST00000106532.3|Slc16a5|ENSMUSG00000045775.9|solute carrier family 16 (monocarboxylic acid transporters), member 5 	ENSMUST00000092445.5|Slc16a5|ENSMUSG00000045775.9|solute carrier family 16 (monocarboxylic acid transporters), member 5 	ENSMUST00000153466.1|Slc16a5|ENSMUSG00000045775.9|solute carrier family 16 (monocarboxylic acid transporters), member 5
mm10_v2_chr10_+_87521795_87521917	0.733383	Gli3_Zic1	ENSMUST00000020241.8|Pah|ENSMUSG00000020051.9|phenylalanine hydroxylase
mm10_v2_chr12_+_109545390_109545443	0.728255	Gli3_Zic1	ENSMUST00000146701.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3
mm10_v2_chrX_-_94542037_94542143	0.726038	Gli3_Zic1	ENSMUST00000026142.7|Maged1|ENSMUSG00000025151.10|melanoma antigen, family D, 1
mm10_v2_chrX_+_101383726_101383741	0.708379	Gli3_Zic1	ENSMUST00000119190.1|Gjb1|ENSMUSG00000047797.8|gap junction protein, beta 1
mm10_v2_chrX_+_101299143_101299201	0.706144	Gli3_Zic1	ENSMUST00000118111.1|Nlgn3|ENSMUSG00000031302.10|neuroligin 3 	ENSMUST00000130555.1|Nlgn3|ENSMUSG00000031302.10|neuroligin 3 	ENSMUST00000151528.1|Nlgn3|ENSMUSG00000031302.10|neuroligin 3
mm10_v2_chr7_+_28540863_28540886	0.673107	Gli3_Zic1	ENSMUST00000119180.2|Sycn|ENSMUSG00000084174.2|syncollin
mm10_v2_chr8_+_54954728_54954820	0.670226	Gli3_Zic1	ENSMUST00000033915.7|Gpm6a|ENSMUSG00000031517.7|glycoprotein m6a
mm10_v2_chr17_-_47400584_47400599	0.652287	Gli3_Zic1	ENSMUST00000059348.7|Guca1a|ENSMUSG00000023982.7|guanylate cyclase activator 1a (retina)
mm10_v2_chr7_-_44306903_44306959	0.646478	Gli3_Zic1	ENSMUST00000004587.9|Clec11a|ENSMUSG00000004473.9|C-type lectin domain family 11, member a
mm10_v2_chr11_+_115154139_115154194	0.636923	Gli3_Zic1	ENSMUST00000021076.5|Rab37|ENSMUSG00000020732.7|RAB37, member of RAS oncogene family
mm10_v2_chr8_+_127064107_127064347	0.636263	Gli3_Zic1	ENSMUST00000162536.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000026921.6|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000162665.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000160766.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000162602.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000162531.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000160581.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000161355.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000159537.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans)
mm10_v2_chr7_-_44227421_44227421	0.634967	Gli3_Zic1	ENSMUST00000072123.4|Gm10109|ENSMUSG00000062073.5|predicted gene 10109
mm10_v2_chr1_-_134234492_134234578	0.631387	Gli3_Zic1	ENSMUST00000169927.1|Adora1|ENSMUSG00000042429.7|adenosine A1 receptor
mm10_v2_chr17_-_24209377_24209416	0.595798	Gli3_Zic1	ENSMUST00000024931.4|Ntn3|ENSMUSG00000079662.1|netrin 3
mm10_v2_chr4_+_114821722_114821722	0.588923	Gli3_Zic1	ENSMUST00000137570.1|Gm12830|ENSMUSG00000055198.3|predicted gene 12830
mm10_v2_chr11_-_83462961_83463071	0.5841	Gli3_Zic1	ENSMUST00000021020.6|Mmp28|ENSMUSG00000020682.11|matrix metallopeptidase 28 (epilysin) 	ENSMUST00000119346.1|Mmp28|ENSMUSG00000020682.11|matrix metallopeptidase 28 (epilysin) 	ENSMUST00000103209.3|Mmp28|ENSMUSG00000020682.11|matrix metallopeptidase 28 (epilysin) 	ENSMUST00000108137.2|Mmp28|ENSMUSG00000020682.11|matrix metallopeptidase 28 (epilysin)
mm10_v2_chr1_-_135167606_135167681	0.581632	Gli3_Zic1	ENSMUST00000027682.8|Gpr37l1|ENSMUSG00000026424.8|G protein-coupled receptor 37-like 1
mm10_v2_chr5_-_117319242_117319242	0.574929	Gli3_Zic1	ENSMUST00000100834.1|Gm10399|ENSMUSG00000072688.1|predicted gene 10399
mm10_v2_chr8_+_127063893_127063916	0.572736	Gli3_Zic1	ENSMUST00000162309.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans)
mm10_v2_chr11_+_70647258_70647294	0.559603	Gli3_Zic1	ENSMUST00000037534.7|Rnf167|ENSMUSG00000040746.9|ring finger protein 167
mm10_v2_chr7_+_99535439_99535498	0.548773	Gli3_Zic1	ENSMUST00000098266.2|Arrb1|ENSMUSG00000018909.9|arrestin, beta 1 	ENSMUST00000179755.1|Arrb1|ENSMUSG00000018909.9|arrestin, beta 1
mm10_v2_chr12_+_4234023_4234066	0.543152	Gli3_Zic1	ENSMUST00000179139.1|Ptrhd1|ENSMUSG00000096199.1|peptidyl-tRNA hydrolase domain containing 1
mm10_v2_chrX_+_101299207_101299218	0.542819	Gli3_Zic1	ENSMUST00000065858.2|Nlgn3|ENSMUSG00000031302.10|neuroligin 3
mm10_v2_chr19_-_6084679_6084693	0.526421	Gli3_Zic1	ENSMUST00000161548.1|Zfpl1|ENSMUSG00000024792.2|zinc finger like protein 1
mm10_v2_chr9_+_100643605_100643626	0.523052	Gli3_Zic1	ENSMUST00000041418.6|Stag1|ENSMUSG00000037286.9|stromal antigen 1
mm10_v2_chr10_-_64090265_64090297	0.522885	Gli3_Zic1	ENSMUST00000105439.1|Lrrtm3|ENSMUSG00000042846.8|leucine rich repeat transmembrane neuronal 3
mm10_v2_chr6_-_125494754_125494791	0.520008	Gli3_Zic1	ENSMUST00000032492.8|Cd9|ENSMUSG00000030342.8|CD9 antigen
mm10_v2_chr2_+_174330006_174330126	0.517556	Gli3_Zic1	ENSMUST00000109085.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus 	ENSMUST00000109087.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus 	ENSMUST00000109084.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm10_v2_chr11_-_100939540_100939566	0.513811	Gli3_Zic1	ENSMUST00000127638.1|Stat3|ENSMUSG00000004040.10|signal transducer and activator of transcription 3
mm10_v2_chr16_-_44016387_44016436	0.507284	Gli3_Zic1	ENSMUST00000036174.3|Gramd1c|ENSMUSG00000036292.7|GRAM domain containing 1C
mm10_v2_chr18_-_21652362_21652373	0.49743	Gli3_Zic1	ENSMUST00000049105.4|Klhl14|ENSMUSG00000042514.5|kelch-like 14
mm10_v2_chr10_+_87521920_87521937	0.494551	Gli3_Zic1	ENSMUST00000142088.1|Pah|ENSMUSG00000020051.9|phenylalanine hydroxylase
mm10_v2_chr1_-_134235420_134235443	0.487607	Gli3_Zic1	ENSMUST00000038191.6|Adora1|ENSMUSG00000042429.7|adenosine A1 receptor 	ENSMUST00000086465.4|Adora1|ENSMUSG00000042429.7|adenosine A1 receptor
mm10_v2_chr12_-_32953772_32953846	0.480738	Gli3_Zic1	ENSMUST00000180391.1|4933406C10Rik|ENSMUSG00000097494.1|RIKEN cDNA 4933406C10 gene 	ENSMUST00000181670.1|4933406C10Rik|ENSMUSG00000097494.1|RIKEN cDNA 4933406C10 gene
mm10_v2_chr8_-_105966038_105966120	0.476528	Gli3_Zic1	ENSMUST00000116429.2|Slc12a4|ENSMUSG00000017765.10|solute carrier family 12, member 4 	ENSMUST00000034370.9|Slc12a4|ENSMUSG00000017765.10|solute carrier family 12, member 4
mm10_v2_chr7_-_114636299_114636357	0.475496	Gli3_Zic1	ENSMUST00000032906.4|Calca|ENSMUSG00000030669.7|calcitonin/calcitonin-related polypeptide, alpha 	ENSMUST00000032907.7|Calca|ENSMUSG00000030669.7|calcitonin/calcitonin-related polypeptide, alpha
mm10_v2_chr7_+_80246375_80246429	0.468617	Gli3_Zic1	ENSMUST00000058266.6|Ttll13|ENSMUSG00000045467.7|tubulin tyrosine ligase-like family, member 13
mm10_v2_chr10_-_93311073_93311161	0.463277	Gli3_Zic1	ENSMUST00000008542.5|Elk3|ENSMUSG00000008398.8|ELK3, member of ETS oncogene family
mm10_v2_chr3_+_31149934_31149958	0.462202	Gli3_Zic1	ENSMUST00000046174.6|Cldn11|ENSMUSG00000037625.6|claudin 11
mm10_v2_chr7_-_19770509_19770547	0.448396	Gli3_Zic1	ENSMUST00000003061.7|Bcam|ENSMUSG00000002980.8|basal cell adhesion molecule
mm10_v2_chr6_-_113531575_113531667	0.44615	Gli3_Zic1	ENSMUST00000032425.5|Emc3|ENSMUSG00000030286.5|ER membrane protein complex subunit 3
mm10_v2_chr11_-_58330319_58330358	0.435175	Gli3_Zic1	ENSMUST00000065533.2|Gm9900|ENSMUSG00000053218.2|predicted gene 9900
mm10_v2_chr11_+_116280939_116280939	0.434788	Gli3_Zic1	ENSMUST00000055872.2|Galr2|ENSMUSG00000020793.5|galanin receptor 2
mm10_v2_chr5_+_117319258_117319284	0.434218	Gli3_Zic1	ENSMUST00000111967.1|Vsig10|ENSMUSG00000066894.8|V-set and immunoglobulin domain containing 10
mm10_v2_chr12_+_109540979_109541007	0.433564	Gli3_Zic1	ENSMUST00000129245.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3 	ENSMUST00000143836.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3 	ENSMUST00000124106.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3
mm10_v2_chr4_+_131921771_131921771	0.433406	Gli3_Zic1	ENSMUST00000094666.3|Tmem200b|ENSMUSG00000070720.3|transmembrane protein 200B
mm10_v2_chr4_+_42949814_42949923	0.432986	Gli3_Zic1	ENSMUST00000037872.3|Dnajb5|ENSMUSG00000036052.8|DnaJ (Hsp40) homolog, subfamily B, member 5 	ENSMUST00000098112.2|Dnajb5|ENSMUSG00000036052.8|DnaJ (Hsp40) homolog, subfamily B, member 5
mm10_v2_chr9_+_100643448_100643542	0.425855	Gli3_Zic1	ENSMUST00000146312.1|Stag1|ENSMUSG00000037286.9|stromal antigen 1 	ENSMUST00000129269.1|Stag1|ENSMUSG00000037286.9|stromal antigen 1
mm10_v2_chr11_+_78245743_78245821	0.42021	Gli3_Zic1	ENSMUST00000002133.8|Sdf2|ENSMUSG00000002064.10|stromal cell derived factor 2
mm10_v2_chr11_-_96824008_96824159	0.419455	Gli3_Zic1	ENSMUST00000142065.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1 	ENSMUST00000167110.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1 	ENSMUST00000169828.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1 	ENSMUST00000126949.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1
mm10_v2_chr9_+_77917364_77917386	0.416112	Gli3_Zic1	ENSMUST00000034904.7|Elovl5|ENSMUSG00000032349.7|ELOVL family member 5, elongation of long chain fatty acids (yeast)
mm10_v2_chr8_+_127064022_127064086	0.411679	Gli3_Zic1	ENSMUST00000160272.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000079777.5|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000162907.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans)
mm10_v2_chr15_+_99392882_99392903	0.409381	Gli3_Zic1	ENSMUST00000023749.8|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr15_-_100584075_100584075	0.406824	Gli3_Zic1	ENSMUST00000184908.1|POU6F1|ENSMUSG00000098598.1|POU domain, class 6, transcription factor 1 (Pou6f1), mRNA
mm10_v2_chr1_-_160077918_160077944	0.402577	Gli3_Zic1	ENSMUST00000028061.3|4930562F07Rik|ENSMUSG00000026729.4|RIKEN cDNA 4930562F07 gene
mm10_v2_chr4_-_62208426_62208487	0.397064	Gli3_Zic1	ENSMUST00000068822.3|Zfp37|ENSMUSG00000028389.4|zinc finger protein 37
mm10_v2_chr5_+_138995038_138995066	0.392748	Gli3_Zic1	ENSMUST00000100518.2|6330403L08Rik|ENSMUSG00000075585.2|RIKEN cDNA 6330403L08 gene
mm10_v2_chr17_-_28350747_28350820	0.390228	Gli3_Zic1	ENSMUST00000080572.7|Tead3|ENSMUSG00000002249.11|TEA domain family member 3 	ENSMUST00000156862.1|Tead3|ENSMUSG00000002249.11|TEA domain family member 3
mm10_v2_chrX_+_71050160_71050256	0.389482	Gli3_Zic1	ENSMUST00000082088.3|Mamld1|ENSMUSG00000059401.7|mastermind-like domain containing 1 	ENSMUST00000114629.3|Mamld1|ENSMUSG00000059401.7|mastermind-like domain containing 1
mm10_v2_chr11_+_69095217_69095289	0.387278	Gli3_Zic1	ENSMUST00000101004.2|Per1|ENSMUSG00000020893.11|period circadian clock 1
mm10_v2_chr8_-_105637403_105637497	0.383297	Gli3_Zic1	ENSMUST00000182046.1|Gm5914|ENSMUSG00000098120.1|predicted gene 5914
mm10_v2_chr8_-_85840877_85840957	0.383287	Gli3_Zic1	ENSMUST00000034140.7|Itfg1|ENSMUSG00000031703.7|integrin alpha FG-GAP repeat containing 1
mm10_v2_chr11_+_101246405_101246567	0.37634	Gli3_Zic1	ENSMUST00000122006.1|Ramp2|ENSMUSG00000001240.7|receptor (calcitonin) activity modifying protein 2 	ENSMUST00000151830.1|Ramp2|ENSMUSG00000001240.7|receptor (calcitonin) activity modifying protein 2
mm10_v2_chr5_+_117319292_117319326	0.375981	Gli3_Zic1	ENSMUST00000086464.4|Vsig10|ENSMUSG00000066894.8|V-set and immunoglobulin domain containing 10
mm10_v2_chr1_-_125912160_125912214	0.365441	Gli3_Zic1	ENSMUST00000159417.1|Lypd1|ENSMUSG00000026344.3|Ly6/Plaur domain containing 1
mm10_v2_chr6_+_48395586_48395646	0.362661	Gli3_Zic1	ENSMUST00000114571.1|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1 	ENSMUST00000114572.3|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1 	ENSMUST00000031815.5|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1
mm10_v2_chr3_+_92288566_92288566	0.361933	Gli3_Zic1	ENSMUST00000090872.4|Sprr2a3|ENSMUSG00000074445.2|small proline-rich protein 2A3
mm10_v2_chr11_+_100415722_100415766	0.361589	Gli3_Zic1	ENSMUST00000107400.2|Fkbp10|ENSMUSG00000001555.4|FK506 binding protein 10
mm10_v2_chr11_-_100939357_100939456	0.360598	Gli3_Zic1	ENSMUST00000092671.5|Stat3|ENSMUSG00000004040.10|signal transducer and activator of transcription 3 	ENSMUST00000103114.1|Stat3|ENSMUSG00000004040.10|signal transducer and activator of transcription 3
mm10_v2_chr6_-_41636389_41636409	0.352241	Gli3_Zic1	ENSMUST00000031902.5|Trpv6|ENSMUSG00000029868.8|transient receptor potential cation channel, subfamily V, member 6
mm10_v2_chr15_+_99392948_99393022	0.351987	Gli3_Zic1	ENSMUST00000161250.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6 	ENSMUST00000160635.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6 	ENSMUST00000161778.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr2_+_78869009_78869109	0.351952	Gli3_Zic1	ENSMUST00000028398.7|Ube2e3|ENSMUSG00000027011.8|ubiquitin-conjugating enzyme E2E 3
mm10_v2_chr17_-_28350600_28350681	0.351378	Gli3_Zic1	ENSMUST00000114799.1|Tead3|ENSMUSG00000002249.11|TEA domain family member 3
mm10_v2_chr1_-_168431896_168431905	0.345329	Gli3_Zic1	ENSMUST00000176540.1|Pbx1|ENSMUSG00000052534.9|pre B cell leukemia homeobox 1
mm10_v2_chr5_-_24601961_24602012	0.345138	Gli3_Zic1	ENSMUST00000030791.7|Smarcd3|ENSMUSG00000028949.7|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
mm10_v2_chr16_-_91011308_91011431	0.34161	Gli3_Zic1	ENSMUST00000121759.1|Synj1|ENSMUSG00000022973.11|synaptojanin 1
mm10_v2_chr5_-_138994935_138995037	0.340807	Gli3_Zic1	ENSMUST00000046901.7|Pdgfa|ENSMUSG00000025856.9|platelet derived growth factor, alpha 	ENSMUST00000076095.7|Pdgfa|ENSMUSG00000025856.9|platelet derived growth factor, alpha
mm10_v2_chr1_-_153186447_153186447	0.337299	Gli3_Zic1	ENSMUST00000027753.6|Lamc2|ENSMUSG00000026479.7|laminin, gamma 2
mm10_v2_chr1_+_167001417_167001431	0.336107	Gli3_Zic1	ENSMUST00000165874.1|Fam78b|ENSMUSG00000060568.8|family with sequence similarity 78, member B
mm10_v2_chr6_+_110645572_110645588	0.335406	Gli3_Zic1	ENSMUST00000071076.6|Grm7|ENSMUSG00000056755.7|glutamate receptor, metabotropic 7 	ENSMUST00000172951.1|Grm7|ENSMUSG00000056755.7|glutamate receptor, metabotropic 7
mm10_v2_chr11_+_62847111_62847132	0.33383	Gli3_Zic1	ENSMUST00000150989.1|Fbxw10|ENSMUSG00000090173.2|F-box and WD-40 domain protein 10 	ENSMUST00000176577.1|Fbxw10|ENSMUSG00000090173.2|F-box and WD-40 domain protein 10
mm10_v2_chr3_+_28263205_28263215	0.332619	Gli3_Zic1	ENSMUST00000159236.2|Tnik|ENSMUSG00000027692.10|TRAF2 and NCK interacting kinase
mm10_v2_chr12_-_70227622_70227683	0.330205	Gli3_Zic1	ENSMUST00000071250.6|Pygl|ENSMUSG00000021069.10|liver glycogen phosphorylase
mm10_v2_chr12_+_44328882_44328954	0.326131	Gli3_Zic1	ENSMUST00000020939.8|Nrcam|ENSMUSG00000020598.9|neuron-glia-CAM-related cell adhesion molecule 	ENSMUST00000110748.2|Nrcam|ENSMUSG00000020598.9|neuron-glia-CAM-related cell adhesion molecule
mm10_v2_chr11_-_100939457_100939484	0.32226	Gli3_Zic1	ENSMUST00000138438.1|Stat3|ENSMUSG00000004040.10|signal transducer and activator of transcription 3
mm10_v2_chr17_-_27204357_27204447	0.313111	Gli3_Zic1	ENSMUST00000055117.7|Lemd2|ENSMUSG00000044857.7|LEM domain containing 2
mm10_v2_chr16_-_91011093_91011113	0.312453	Gli3_Zic1	ENSMUST00000170853.1|Synj1|ENSMUSG00000022973.11|synaptojanin 1 	ENSMUST00000118390.2|Synj1|ENSMUSG00000022973.11|synaptojanin 1
mm10_v2_chr7_+_35119285_35119301	0.312228	Gli3_Zic1	ENSMUST00000042985.9|Cebpa|ENSMUSG00000034957.9|CCAAT/enhancer binding protein (C/EBP), alpha
mm10_v2_chr11_+_69765970_69766027	0.310923	Gli3_Zic1	ENSMUST00000108642.1|Zbtb4|ENSMUSG00000018750.8|zinc finger and BTB domain containing 4 	ENSMUST00000156932.1|Zbtb4|ENSMUSG00000018750.8|zinc finger and BTB domain containing 4
mm10_v2_chr4_-_4138432_4138480	0.30955	Gli3_Zic1	ENSMUST00000070375.7|Penk|ENSMUSG00000045573.9|preproenkephalin
mm10_v2_chr10_+_39612934_39612934	0.309141	Gli3_Zic1	ENSMUST00000019987.6|Traf3ip2|ENSMUSG00000019842.6|TRAF3 interacting protein 2
mm10_v2_chr7_-_25297866_25297958	0.306081	Gli3_Zic1	ENSMUST00000148150.1|Pafah1b3|ENSMUSG00000005447.6|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3 	ENSMUST00000155118.1|Pafah1b3|ENSMUSG00000005447.6|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3
mm10_v2_chr3_+_105452326_105452365	0.304507	Gli3_Zic1	ENSMUST00000098761.3|Kcnd3|ENSMUSG00000040896.10|potassium voltage-gated channel, Shal-related family, member 3
mm10_v2_chr7_-_25297967_25298005	0.304308	Gli3_Zic1	ENSMUST00000005583.5|Pafah1b3|ENSMUSG00000005447.6|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3
mm10_v2_chr4_+_133011506_133011546	0.302636	Gli3_Zic1	ENSMUST00000105915.1|Ahdc1|ENSMUSG00000037692.8|AT hook, DNA binding motif, containing 1 	ENSMUST00000105916.1|Ahdc1|ENSMUSG00000037692.8|AT hook, DNA binding motif, containing 1
mm10_v2_chr2_-_77170592_77170645	0.302254	Gli3_Zic1	ENSMUST00000164114.2|Ccdc141|ENSMUSG00000044033.10|coiled-coil domain containing 141 	ENSMUST00000049544.7|Ccdc141|ENSMUSG00000044033.10|coiled-coil domain containing 141
mm10_v2_chr3_+_105904377_105904423	0.300901	Gli3_Zic1	ENSMUST00000000574.1|Adora3|ENSMUSG00000000562.4|adenosine A3 receptor
mm10_v2_chr1_-_155099630_155099636	0.300887	Gli3_Zic1	ENSMUST00000055322.4|Ier5|ENSMUSG00000056708.4|immediate early response 5
mm10_v2_chr11_+_53519725_53519800	0.297761	Gli3_Zic1	ENSMUST00000108987.1|Sept8|ENSMUSG00000018398.12|septin 8 	ENSMUST00000121334.1|Sept8|ENSMUSG00000018398.12|septin 8 	ENSMUST00000117061.1|Sept8|ENSMUSG00000018398.12|septin 8
mm10_v2_chr3_+_27984145_27984314	0.293794	Gli3_Zic1	ENSMUST00000067757.4|Pld1|ENSMUSG00000027695.10|phospholipase D1
mm10_v2_chr17_+_37045980_37046080	0.293337	Gli3_Zic1	ENSMUST00000174456.1|Gabbr1|ENSMUSG00000024462.11|gamma-aminobutyric acid (GABA) B receptor, 1
mm10_v2_chr8_+_84415348_84415392	0.293066	Gli3_Zic1	ENSMUST00000121390.1|Cacna1a|ENSMUSG00000034656.10|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit 	ENSMUST00000122053.1|Cacna1a|ENSMUSG00000034656.10|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
mm10_v2_chr19_+_38481057_38481121	0.292683	Gli3_Zic1	ENSMUST00000182481.1|Plce1|ENSMUSG00000024998.11|phospholipase C, epsilon 1
mm10_v2_chr1_-_180483410_180483504	0.292599	Gli3_Zic1	ENSMUST00000136521.1|6330403A02Rik|ENSMUSG00000053963.6|RIKEN cDNA 6330403A02 gene 	ENSMUST00000179826.1|6330403A02Rik|ENSMUSG00000053963.6|RIKEN cDNA 6330403A02 gene
mm10_v2_chr7_+_12881165_12881204	0.291872	Gli3_Zic1	ENSMUST00000144578.1|Zfp128|ENSMUSG00000060397.6|zinc finger protein 128
mm10_v2_chr2_-_168230353_168230386	0.291685	Gli3_Zic1	ENSMUST00000154111.1|Dpm1|ENSMUSG00000078919.4|dolichol-phosphate (beta-D) mannosyltransferase 1
mm10_v2_chr5_-_116591811_116591830	0.28999	Gli3_Zic1	ENSMUST00000076124.5|Srrm4|ENSMUSG00000063919.6|serine/arginine repetitive matrix 4
mm10_v2_chr2_+_164879358_164879398	0.288949	Gli3_Zic1	ENSMUST00000041643.3|Pcif1|ENSMUSG00000039849.5|PDX1 C-terminal inhibiting factor 1
mm10_v2_chr14_+_51984857_51984971	0.288429	Gli3_Zic1	ENSMUST00000100639.4|Arhgef40|ENSMUSG00000004562.10|Rho guanine nucleotide exchange factor (GEF) 40 	ENSMUST00000182909.1|Arhgef40|ENSMUSG00000004562.10|Rho guanine nucleotide exchange factor (GEF) 40 	ENSMUST00000182760.1|Arhgef40|ENSMUSG00000004562.10|Rho guanine nucleotide exchange factor (GEF) 40 	ENSMUST00000182061.1|Arhgef40|ENSMUSG00000004562.10|Rho guanine nucleotide exchange factor (GEF) 40 	ENSMUST00000182193.1|Arhgef40|ENSMUSG00000004562.10|Rho guanine nucleotide exchange factor (GEF) 40
mm10_v2_chr6_+_43265582_43265681	0.287881	Gli3_Zic1	ENSMUST00000031750.7|Arhgef5|ENSMUSG00000033542.7|Rho guanine nucleotide exchange factor (GEF) 5
mm10_v2_chrX_-_150812715_150812805	0.284495	Gli3_Zic1	ENSMUST00000112697.3|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2
mm10_v2_chr9_-_105495037_105495117	0.283961	Gli3_Zic1	ENSMUST00000176190.1|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000163879.2|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000112558.2|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000176390.1|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering
mm10_v2_chr10_+_22158566_22158586	0.283216	Gli3_Zic1	ENSMUST00000181645.1|Raet1e|ENSMUSG00000053219.9|retinoic acid early transcript 1E 	ENSMUST00000105522.2|H60b|ENSMUSG00000075297.4|histocompatibility 60b
mm10_v2_chr2_+_27079371_27079385	0.282664	Gli3_Zic1	ENSMUST00000091233.6|Adamtsl2|ENSMUSG00000036040.8|ADAMTS-like 2
mm10_v2_chr1_-_168431695_168431750	0.280451	Gli3_Zic1	ENSMUST00000176790.1|Pbx1|ENSMUSG00000052534.9|pre B cell leukemia homeobox 1
mm10_v2_chr11_-_76399107_76399183	0.277868	Gli3_Zic1	ENSMUST00000021204.3|Nxn|ENSMUSG00000020844.6|nucleoredoxin
mm10_v2_chr15_-_103310425_103310444	0.276176	Gli3_Zic1	ENSMUST00000079824.4|Gpr84|ENSMUSG00000063234.4|G protein-coupled receptor 84
mm10_v2_chr1_+_162639148_162639158	0.274789	Gli3_Zic1	ENSMUST00000028020.9|Myoc|ENSMUSG00000026697.9|myocilin
mm10_v2_chr9_-_58158498_58158554	0.273975	Gli3_Zic1	ENSMUST00000168864.2|Islr|ENSMUSG00000037206.8|immunoglobulin superfamily containing leucine-rich repeat
mm10_v2_chr19_-_5560570_5560582	0.273934	Gli3_Zic1	ENSMUST00000025861.1|Ovol1|ENSMUSG00000024922.1|OVO homolog-like 1 (Drosophila)
mm10_v2_chr1_+_36511867_36511903	0.272907	Gli3_Zic1	ENSMUST00000001166.7|Cnnm3|ENSMUSG00000001138.7|cyclin M3 	ENSMUST00000097776.3|Cnnm3|ENSMUSG00000001138.7|cyclin M3
mm10_v2_chr8_+_85840971_85841028	0.272354	Gli3_Zic1	ENSMUST00000053771.7|Phkb|ENSMUSG00000036879.9|phosphorylase kinase beta 	ENSMUST00000161850.1|Phkb|ENSMUSG00000036879.9|phosphorylase kinase beta
mm10_v2_chr10_+_87521954_87522027	0.271017	Gli3_Zic1	ENSMUST00000143624.1|Pah|ENSMUSG00000020051.9|phenylalanine hydroxylase
mm10_v2_chr19_-_4698315_4698315	0.26898	Gli3_Zic1	ENSMUST00000096325.3|Gm960|ENSMUSG00000071691.4|predicted gene 960
mm10_v2_chr7_-_19698383_19698407	0.268442	Gli3_Zic1	ENSMUST00000173739.1|Apoe|ENSMUSG00000002985.9|apolipoprotein E
mm10_v2_chrX_+_163908982_163909017	0.268377	Gli3_Zic1	ENSMUST00000069041.8|Ap1s2|ENSMUSG00000031367.9|adaptor-related protein complex 1, sigma 2 subunit
mm10_v2_chr7_+_100176663_100176680	0.267338	Gli3_Zic1	ENSMUST00000178946.1|Kcne3|ENSMUSG00000035165.7|potassium voltage-gated channel, Isk-related subfamily, gene 3
mm10_v2_chrX_+_155262443_155262481	0.266562	Gli3_Zic1	ENSMUST00000026324.9|Acot9|ENSMUSG00000025287.9|acyl-CoA thioesterase 9
mm10_v2_chr11_-_58733223_58733223	0.266124	Gli3_Zic1	ENSMUST00000075607.2|Olfr317|ENSMUSG00000060030.2|olfactory receptor 317
mm10_v2_chr11_+_116030304_116030385	0.265134	Gli3_Zic1	ENSMUST00000021116.5|Unk|ENSMUSG00000020770.7|unkempt homolog (Drosophila) 	ENSMUST00000106452.1|Unk|ENSMUSG00000020770.7|unkempt homolog (Drosophila)
mm10_v2_chr16_+_38562806_38562819	0.264809	Gli3_Zic1	ENSMUST00000171687.1|Tmem39a|ENSMUSG00000002845.8|transmembrane protein 39a 	ENSMUST00000002924.8|Tmem39a|ENSMUSG00000002845.8|transmembrane protein 39a
mm10_v2_chr10_-_99126321_99126321	0.264022	Gli3_Zic1	ENSMUST00000060761.5|Phxr2|ENSMUSG00000055108.5|per-hexamer repeat gene 2
mm10_v2_chr9_+_86695542_86695542	0.263001	Gli3_Zic1	ENSMUST00000150367.2|A330041J22Rik|ENSMUSG00000087466.2|RIKEN cDNA A330041J22 gene
mm10_v2_chr16_+_17561885_17562042	0.262351	Gli3_Zic1	ENSMUST00000171002.1|P2rx6|ENSMUSG00000022758.6|purinergic receptor P2X, ligand-gated ion channel, 6 	ENSMUST00000023441.4|P2rx6|ENSMUSG00000022758.6|purinergic receptor P2X, ligand-gated ion channel, 6
mm10_v2_chr6_+_48395652_48395688	0.261867	Gli3_Zic1	ENSMUST00000077093.4|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1
mm10_v2_chr8_+_3493135_3493212	0.261106	Gli3_Zic1	ENSMUST00000061508.7|Zfp358|ENSMUSG00000047264.7|zinc finger protein 358
mm10_v2_chr11_+_101246960_101247093	0.260197	Gli3_Zic1	ENSMUST00000107282.3|Ramp2|ENSMUSG00000001240.7|receptor (calcitonin) activity modifying protein 2
mm10_v2_chr9_+_108517070_108517117	0.259641	Gli3_Zic1	ENSMUST00000006851.8|Qrich1|ENSMUSG00000006673.8|glutamine-rich 1 	ENSMUST00000112155.3|Qrich1|ENSMUSG00000006673.8|glutamine-rich 1
mm10_v2_chr18_-_35655185_35655199	0.255089	Gli3_Zic1	ENSMUST00000097619.1|Prob1|ENSMUSG00000073600.1|proline rich basic protein 1
mm10_v2_chr9_+_21165714_21165762	0.25284	Gli3_Zic1	ENSMUST00000039413.8|Pde4a|ENSMUSG00000032177.10|phosphodiesterase 4A, cAMP specific
mm10_v2_chr7_-_13034722_13034782	0.251915	Gli3_Zic1	ENSMUST00000005711.4|Chmp2a|ENSMUSG00000033916.4|charged multivesicular body protein 2A
mm10_v2_chr1_-_63730306_63730342	0.251066	Gli3_Zic1	ENSMUST00000114094.2|Mdh1b|ENSMUSG00000025963.5|malate dehydrogenase 1B, NAD (soluble)
mm10_v2_chr9_-_35558522_35558548	0.25097	Gli3_Zic1	ENSMUST00000034612.5|Ddx25|ENSMUSG00000032101.5|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25
mm10_v2_chr11_-_109363654_109363654	0.250722	Gli3_Zic1	ENSMUST00000070956.3|Gm11696|ENSMUSG00000056687.3|predicted gene 11696
mm10_v2_chr7_-_19822698_19822776	0.249999	Gli3_Zic1	ENSMUST00000120537.1|Bcl3|ENSMUSG00000053175.10|B cell leukemia/lymphoma 3
mm10_v2_chr7_-_84605819_84605827	0.249933	Gli3_Zic1	ENSMUST00000032865.9|Fah|ENSMUSG00000030630.9|fumarylacetoacetate hydrolase
mm10_v2_chr8_-_41041828_41041866	0.24823	Gli3_Zic1	ENSMUST00000051379.7|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1
mm10_v2_chr12_+_9029982_9030012	0.247752	Gli3_Zic1	ENSMUST00000085741.1|Ttc32|ENSMUSG00000066637.1|tetratricopeptide repeat domain 32
mm10_v2_chrX_-_141725181_141725263	0.247627	Gli3_Zic1	ENSMUST00000067841.7|Irs4|ENSMUSG00000054667.7|insulin receptor substrate 4
mm10_v2_chr7_-_6331235_6331290	0.244483	Gli3_Zic1	ENSMUST00000127658.1|Zfp583|ENSMUSG00000030443.10|zinc finger protein 583 	ENSMUST00000062765.7|Zfp583|ENSMUSG00000030443.10|zinc finger protein 583
mm10_v2_chr19_-_5106967_5107023	0.240769	Gli3_Zic1	ENSMUST00000025804.5|Rab1b|ENSMUSG00000024870.5|RAB1B, member RAS oncogene family
mm10_v2_chr3_-_104511812_104511933	0.240188	Gli3_Zic1	ENSMUST00000046316.6|Lrig2|ENSMUSG00000032913.9|leucine-rich repeats and immunoglobulin-like domains 2
mm10_v2_chr1_+_125561010_125561095	0.23969	Gli3_Zic1	ENSMUST00000027580.4|Slc35f5|ENSMUSG00000026342.4|solute carrier family 35, member F5
mm10_v2_chr5_-_34187670_34187749	0.23961	Gli3_Zic1	ENSMUST00000042701.6|Mxd4|ENSMUSG00000037235.7|Max dimerization protein 4 	ENSMUST00000119171.1|Mxd4|ENSMUSG00000037235.7|Max dimerization protein 4
mm10_v2_chr10_-_128804353_128804374	0.23643	Gli3_Zic1	ENSMUST00000051011.7|Tmem198b|ENSMUSG00000047090.7|transmembrane protein 198b
mm10_v2_chr17_-_68004075_68004140	0.236249	Gli3_Zic1	ENSMUST00000024840.5|Arhgap28|ENSMUSG00000024043.7|Rho GTPase activating protein 28
mm10_v2_chr9_-_50752348_50752373	0.235143	Gli3_Zic1	ENSMUST00000042790.3|Hspb2|ENSMUSG00000038086.3|heat shock protein 2
mm10_v2_chr11_+_62847062_62847087	0.233905	Gli3_Zic1	ENSMUST00000036085.4|Fbxw10|ENSMUSG00000090173.2|F-box and WD-40 domain protein 10
mm10_v2_chr2_+_106693185_106693278	0.233774	Gli3_Zic1	ENSMUST00000111063.1|Mpped2|ENSMUSG00000016386.9|metallophosphoesterase domain containing 2
mm10_v2_chr19_-_5085483_5085531	0.232468	Gli3_Zic1	ENSMUST00000140389.1|Tmem151a|ENSMUSG00000061451.7|transmembrane protein 151A 	ENSMUST00000151413.1|Tmem151a|ENSMUSG00000061451.7|transmembrane protein 151A 	ENSMUST00000077066.7|Tmem151a|ENSMUSG00000061451.7|transmembrane protein 151A
mm10_v2_chr4_+_124657646_124657656	0.231516	Gli3_Zic1	ENSMUST00000053491.7|Pou3f1|ENSMUSG00000090125.2|POU domain, class 3, transcription factor 1
mm10_v2_chr10_-_22149270_22149270	0.229932	Gli3_Zic1	ENSMUST00000179054.1|E030030I06Rik|ENSMUSG00000055657.8|RIKEN cDNA E030030I06 gene 	ENSMUST00000069372.6|E030030I06Rik|ENSMUSG00000055657.8|RIKEN cDNA E030030I06 gene
mm10_v2_chr4_+_44943727_44943791	0.229415	Gli3_Zic1	ENSMUST00000154177.1|Gm12678|ENSMUSG00000084854.1|predicted gene 12678
mm10_v2_chr5_-_148928619_148928659	0.227829	Gli3_Zic1	ENSMUST00000149169.1|Katnal1|ENSMUSG00000041298.9|katanin p60 subunit A-like 1 	ENSMUST00000047257.8|Katnal1|ENSMUSG00000041298.9|katanin p60 subunit A-like 1
mm10_v2_chr5_+_135887988_135888018	0.227645	Gli3_Zic1	ENSMUST00000111155.1|Hspb1|ENSMUSG00000004951.10|heat shock protein 1
mm10_v2_chr15_-_100669496_100669511	0.226937	Gli3_Zic1	ENSMUST00000182814.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2 	ENSMUST00000182068.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2
mm10_v2_chr5_+_149411749_149411811	0.22503	Gli3_Zic1	ENSMUST00000093110.5|Medag|ENSMUSG00000029659.10|mesenteric estrogen dependent adipogenesis
mm10_v2_chr7_+_128246812_128246948	0.224858	Gli3_Zic1	ENSMUST00000164710.1|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1 	ENSMUST00000070656.5|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1
mm10_v2_chr11_-_61494173_61494296	0.224548	Gli3_Zic1	ENSMUST00000101085.2|Mapk7|ENSMUSG00000001034.11|mitogen-activated protein kinase 7 	ENSMUST00000079080.6|Mapk7|ENSMUSG00000001034.11|mitogen-activated protein kinase 7 	ENSMUST00000108714.1|Mapk7|ENSMUSG00000001034.11|mitogen-activated protein kinase 7
mm10_v2_chr7_-_142657466_142657496	0.224083	Gli3_Zic1	ENSMUST00000097936.2|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2 	ENSMUST00000000033.5|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2
mm10_v2_chr6_-_101377897_101378016	0.222901	Gli3_Zic1	ENSMUST00000075994.6|Pdzrn3|ENSMUSG00000035357.10|PDZ domain containing RING finger 3
mm10_v2_chr5_+_92137896_92137939	0.222106	Gli3_Zic1	ENSMUST00000031355.6|Uso1|ENSMUSG00000029407.7|USO1 vesicle docking factor
mm10_v2_chr11_+_60353324_60353408	0.220934	Gli3_Zic1	ENSMUST00000070805.6|Lrrc48|ENSMUSG00000056598.10|leucine rich repeat containing 48 	ENSMUST00000094140.2|Lrrc48|ENSMUSG00000056598.10|leucine rich repeat containing 48 	ENSMUST00000108723.2|Lrrc48|ENSMUSG00000056598.10|leucine rich repeat containing 48 	ENSMUST00000108722.4|Lrrc48|ENSMUSG00000056598.10|leucine rich repeat containing 48
mm10_v2_chr5_-_122900267_122900377	0.220759	Gli3_Zic1	ENSMUST00000031435.7|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr15_-_89140664_89140703	0.220672	Gli3_Zic1	ENSMUST00000088827.6|Mapk12|ENSMUSG00000022610.9|mitogen-activated protein kinase 12
mm10_v2_chr7_-_81454751_81454764	0.217592	Gli3_Zic1	ENSMUST00000098331.3|Cpeb1|ENSMUSG00000025586.10|cytoplasmic polyadenylation element binding protein 1 	ENSMUST00000178892.1|Cpeb1|ENSMUSG00000025586.10|cytoplasmic polyadenylation element binding protein 1
mm10_v2_chr5_+_24425232_24425291	0.216311	Gli3_Zic1	ENSMUST00000080067.6|Slc4a2|ENSMUSG00000028962.8|solute carrier family 4 (anion exchanger), member 2
mm10_v2_chr3_+_94478831_94478831	0.215779	Gli3_Zic1	ENSMUST00000029784.5|Celf3|ENSMUSG00000028137.5|CUGBP, Elav-like family member 3
mm10_v2_chr17_+_37045963_37045975	0.214765	Gli3_Zic1	ENSMUST00000025338.9|Gabbr1|ENSMUSG00000024462.11|gamma-aminobutyric acid (GABA) B receptor, 1
mm10_v2_chr4_-_151108244_151108303	0.214424	Gli3_Zic1	ENSMUST00000131948.1|Camta1|ENSMUSG00000014592.13|calmodulin binding transcription activator 1
mm10_v2_chr6_+_37870786_37870882	0.214216	Gli3_Zic1	ENSMUST00000120428.1|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24 	ENSMUST00000031859.7|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24
mm10_v2_chr16_+_38562821_38562861	0.21392	Gli3_Zic1	ENSMUST00000163948.1|Tmem39a|ENSMUSG00000002845.8|transmembrane protein 39a
mm10_v2_chr12_+_32378692_32378789	0.213074	Gli3_Zic1	ENSMUST00000172332.2|Ccdc71l|ENSMUSG00000090946.2|coiled-coil domain containing 71 like
mm10_v2_chr1_-_131276914_131276951	0.212906	Gli3_Zic1	ENSMUST00000161764.1|Ikbke|ENSMUSG00000042349.7|inhibitor of kappaB kinase epsilon
mm10_v2_chr18_-_38918642_38918771	0.211942	Gli3_Zic1	ENSMUST00000040647.4|Fgf1|ENSMUSG00000036585.9|fibroblast growth factor 1
mm10_v2_chr5_+_135887905_135887923	0.211054	Gli3_Zic1	ENSMUST00000005077.6|Hspb1|ENSMUSG00000004951.10|heat shock protein 1
mm10_v2_chr12_+_32953874_32953891	0.210378	Gli3_Zic1	ENSMUST00000076698.5|Sypl|ENSMUSG00000020570.8|synaptophysin-like protein
mm10_v2_chr11_-_42000532_42000592	0.210258	Gli3_Zic1	ENSMUST00000070735.3|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm10_v2_chr2_+_181520485_181520531	0.210114	Gli3_Zic1	ENSMUST00000072334.5|Dnajc5|ENSMUSG00000000826.10|DnaJ (Hsp40) homolog, subfamily C, member 5
mm10_v2_chrX_+_161717498_161717627	0.208086	Gli3_Zic1	ENSMUST00000061514.7|Rai2|ENSMUSG00000043518.7|retinoic acid induced 2
mm10_v2_chr17_+_37050631_37050674	0.207923	Gli3_Zic1	ENSMUST00000172792.1|Gabbr1|ENSMUSG00000024462.11|gamma-aminobutyric acid (GABA) B receptor, 1 	ENSMUST00000174347.1|Gabbr1|ENSMUSG00000024462.11|gamma-aminobutyric acid (GABA) B receptor, 1
mm10_v2_chr4_+_144893077_144893103	0.207627	Gli3_Zic1	ENSMUST00000154208.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr9_+_118506226_118506318	0.206655	Gli3_Zic1	ENSMUST00000084820.4|Golga4|ENSMUSG00000038708.9|golgi autoantigen, golgin subfamily a, 4
mm10_v2_chr7_-_111779963_111779993	0.206139	Gli3_Zic1	ENSMUST00000049430.8|Galnt18|ENSMUSG00000038296.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18 	ENSMUST00000106663.1|Galnt18|ENSMUSG00000038296.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18
mm10_v2_chr11_+_85832551_85832551	0.205289	Gli3_Zic1	ENSMUST00000000095.6|Tbx2|ENSMUSG00000000093.6|T-box 2
mm10_v2_chr7_+_29783958_29784084	0.204727	Gli3_Zic1	ENSMUST00000032803.5|Zfp30|ENSMUSG00000047473.8|zinc finger protein 30 	ENSMUST00000122387.1|Zfp30|ENSMUSG00000047473.8|zinc finger protein 30
mm10_v2_chr9_-_114026711_114026764	0.204493	Gli3_Zic1	ENSMUST00000117537.1|Fbxl2|ENSMUSG00000032507.9|F-box and leucine-rich repeat protein 2 	ENSMUST00000035090.7|Fbxl2|ENSMUSG00000032507.9|F-box and leucine-rich repeat protein 2
mm10_v2_chr10_+_79777261_79777280	0.203602	Gli3_Zic1	ENSMUST00000020575.4|Fstl3|ENSMUSG00000020325.10|follistatin-like 3
mm10_v2_chr5_+_43818893_43818928	0.199778	Gli3_Zic1	ENSMUST00000101237.4|Bst1|ENSMUSG00000029082.11|bone marrow stromal cell antigen 1
mm10_v2_chr1_+_43445736_43445830	0.198531	Gli3_Zic1	ENSMUST00000086421.5|Nck2|ENSMUSG00000066877.5|non-catalytic region of tyrosine kinase adaptor protein 2 	ENSMUST00000114744.1|Nck2|ENSMUSG00000066877.5|non-catalytic region of tyrosine kinase adaptor protein 2
mm10_v2_chr8_-_95434869_95434901	0.196684	Gli3_Zic1	ENSMUST00000034249.6|Gtl3|ENSMUSG00000031796.6|gene trap locus 3
mm10_v2_chr11_-_69369377_69369415	0.19643	Gli3_Zic1	ENSMUST00000092971.6|Chd3|ENSMUSG00000018474.11|chromodomain helicase DNA binding protein 3 	ENSMUST00000108661.1|Chd3|ENSMUSG00000018474.11|chromodomain helicase DNA binding protein 3
mm10_v2_chr9_+_62858085_62858138	0.196195	Gli3_Zic1	ENSMUST00000034777.6|Calml4|ENSMUSG00000032246.7|calmodulin-like 4 	ENSMUST00000163820.1|Calml4|ENSMUSG00000032246.7|calmodulin-like 4
mm10_v2_chr18_-_62179948_62179986	0.195094	Gli3_Zic1	ENSMUST00000053640.3|Adrb2|ENSMUSG00000045730.3|adrenergic receptor, beta 2
mm10_v2_chr15_-_97844254_97844318	0.1947	Gli3_Zic1	ENSMUST00000119670.1|Hdac7|ENSMUSG00000022475.12|histone deacetylase 7 	ENSMUST00000116409.2|Hdac7|ENSMUSG00000022475.12|histone deacetylase 7
mm10_v2_chr4_-_110292719_110292732	0.194204	Gli3_Zic1	ENSMUST00000106601.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm10_v2_chr18_-_38929148_38929168	0.193418	Gli3_Zic1	ENSMUST00000134864.1|Fgf1|ENSMUSG00000036585.9|fibroblast growth factor 1
mm10_v2_chr5_-_122264378_122264460	0.192153	Gli3_Zic1	ENSMUST00000111738.3|Tctn1|ENSMUSG00000038593.12|tectonic family member 1
mm10_v2_chr10_+_26772477_26772515	0.190519	Gli3_Zic1	ENSMUST00000039557.7|Arhgap18|ENSMUSG00000039031.9|Rho GTPase activating protein 18
mm10_v2_chr14_+_70530819_70530847	0.188724	Gli3_Zic1	ENSMUST00000047331.6|Lgi3|ENSMUSG00000033595.6|leucine-rich repeat LGI family, member 3
mm10_v2_chr1_-_69108039_69108064	0.187588	Gli3_Zic1	ENSMUST00000121473.1|Erbb4|ENSMUSG00000062209.9|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)
mm10_v2_chr17_-_34862473_34862535	0.186399	Gli3_Zic1	ENSMUST00000025229.4|Cfb|ENSMUSG00000090231.4|complement factor B 	ENSMUST00000176203.2|Cfb|ENSMUSG00000090231.4|complement factor B 	ENSMUST00000128767.1|Cfb|ENSMUSG00000090231.4|complement factor B
mm10_v2_chr4_-_70534904_70534987	0.185883	Gli3_Zic1	ENSMUST00000107359.2|Megf9|ENSMUSG00000039270.3|multiple EGF-like-domains 9
mm10_v2_chr2_-_104712122_104712180	0.185843	Gli3_Zic1	ENSMUST00000111118.1|Tcp11l1|ENSMUSG00000027175.4|t-complex 11 like 1 	ENSMUST00000028597.3|Tcp11l1|ENSMUSG00000027175.4|t-complex 11 like 1
mm10_v2_chr15_-_97844164_97844245	0.184097	Gli3_Zic1	ENSMUST00000120683.1|Hdac7|ENSMUSG00000022475.12|histone deacetylase 7
mm10_v2_chr5_-_38561658_38561680	0.183487	Gli3_Zic1	ENSMUST00000005234.9|Wdr1|ENSMUSG00000005103.9|WD repeat domain 1
mm10_v2_chr2_-_36104060_36104073	0.182724	Gli3_Zic1	ENSMUST00000112961.3|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6 	ENSMUST00000112966.3|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6
mm10_v2_chr1_-_165460430_165460487	0.182225	Gli3_Zic1	ENSMUST00000027856.7|Dcaf6|ENSMUSG00000026571.7|DDB1 and CUL4 associated factor 6
mm10_v2_chr3_-_130709419_130709451	0.182048	Gli3_Zic1	ENSMUST00000043937.7|Ostc|ENSMUSG00000041084.7|oligosaccharyltransferase complex subunit
mm10_v2_chr1_+_75360321_75360338	0.182006	Gli3_Zic1	ENSMUST00000027409.9|Des|ENSMUSG00000026208.9|desmin
mm10_v2_chr6_-_56362356_56362519	0.181534	Gli3_Zic1	ENSMUST00000044505.7|Pde1c|ENSMUSG00000004347.10|phosphodiesterase 1C 	ENSMUST00000166102.1|Pde1c|ENSMUSG00000004347.10|phosphodiesterase 1C 	ENSMUST00000164037.1|Pde1c|ENSMUSG00000004347.10|phosphodiesterase 1C 	ENSMUST00000114327.2|Pde1c|ENSMUSG00000004347.10|phosphodiesterase 1C
mm10_v2_chr15_+_75969123_75969189	0.181397	Gli3_Zic1	ENSMUST00000109966.1|Zfp707|ENSMUSG00000034429.8|zinc finger protein 707 	ENSMUST00000109967.3|Zfp707|ENSMUSG00000034429.8|zinc finger protein 707
mm10_v2_chr3_-_101110278_101110294	0.181254	Gli3_Zic1	ENSMUST00000102694.3|Ptgfrn|ENSMUSG00000027864.8|prostaglandin F2 receptor negative regulator
mm10_v2_chr11_+_75655873_75655918	0.179898	Gli3_Zic1	ENSMUST00000108431.2|Myo1c|ENSMUSG00000017774.13|myosin IC
mm10_v2_chr16_+_23107413_23107479	0.178826	Gli3_Zic1	ENSMUST00000023599.6|Eif4a2|ENSMUSG00000022884.8|eukaryotic translation initiation factor 4A2 	ENSMUST00000168891.1|Eif4a2|ENSMUSG00000022884.8|eukaryotic translation initiation factor 4A2
mm10_v2_chr6_+_92940572_92940592	0.17742	Gli3_Zic1	ENSMUST00000181145.1|9530026P05Rik|ENSMUSG00000097462.1|RIKEN cDNA 9530026P05 gene 	ENSMUST00000181840.1|9530026P05Rik|ENSMUSG00000097462.1|RIKEN cDNA 9530026P05 gene
mm10_v2_chr9_-_79793507_79793519	0.176093	Gli3_Zic1	ENSMUST00000120690.1|Tmem30a|ENSMUSG00000032328.6|transmembrane protein 30A
mm10_v2_chr16_-_30550560_30550594	0.176033	Gli3_Zic1	ENSMUST00000140402.1|Tmem44|ENSMUSG00000022537.11|transmembrane protein 44
mm10_v2_chr9_-_79793378_79793430	0.175894	Gli3_Zic1	ENSMUST00000034878.5|Tmem30a|ENSMUSG00000032328.6|transmembrane protein 30A
mm10_v2_chr11_+_70000578_70000624	0.175883	Gli3_Zic1	ENSMUST00000019362.8|Dvl2|ENSMUSG00000020888.10|dishevelled 2, dsh homolog (Drosophila)
mm10_v2_chr6_+_125009113_125009179	0.175587	Gli3_Zic1	ENSMUST00000054553.4|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384
mm10_v2_chr8_+_121127827_121127940	0.17169	Gli3_Zic1	ENSMUST00000181609.1|Foxl1|ENSMUSG00000097084.1|forkhead box L1
mm10_v2_chr6_+_125009232_125009253	0.170452	Gli3_Zic1	ENSMUST00000112428.1|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384
mm10_v2_chr5_+_115506668_115506808	0.170051	Gli3_Zic1	ENSMUST00000067268.8|Pxn|ENSMUSG00000029528.11|paxillin 	ENSMUST00000086523.3|Pxn|ENSMUSG00000029528.11|paxillin
mm10_v2_chr15_+_75969287_75969312	0.169625	Gli3_Zic1	ENSMUST00000147641.1|Zfp707|ENSMUSG00000034429.8|zinc finger protein 707
mm10_v2_chr2_+_105127200_105127222	0.169279	Gli3_Zic1	ENSMUST00000139585.1|Wt1|ENSMUSG00000016458.7|Wilms tumor 1 homolog
mm10_v2_chr7_+_25267669_25267723	0.168782	Gli3_Zic1	ENSMUST00000169266.1|Cic|ENSMUSG00000005442.7|capicua homolog (Drosophila)
mm10_v2_chr10_+_127041931_127041972	0.16737	Gli3_Zic1	ENSMUST00000006915.7|Mettl1|ENSMUSG00000006732.8|methyltransferase like 1 	ENSMUST00000120542.1|Mettl1|ENSMUSG00000006732.8|methyltransferase like 1
mm10_v2_chr13_-_54611274_54611297	0.167141	Gli3_Zic1	ENSMUST00000049575.7|Cltb|ENSMUSG00000047547.8|clathrin, light polypeptide (Lcb)
mm10_v2_chr11_-_116654245_116654325	0.165004	Gli3_Zic1	ENSMUST00000021166.5|Cygb|ENSMUSG00000020810.5|cytoglobin
mm10_v2_chr6_+_17463749_17463809	0.164969	Gli3_Zic1	ENSMUST00000115443.1|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chrX_+_163909132_163909169	0.164886	Gli3_Zic1	ENSMUST00000033734.7|Ap1s2|ENSMUSG00000031367.9|adaptor-related protein complex 1, sigma 2 subunit 	ENSMUST00000112294.2|Ap1s2|ENSMUSG00000031367.9|adaptor-related protein complex 1, sigma 2 subunit
mm10_v2_chr9_+_45055166_45055195	0.163827	Gli3_Zic1	ENSMUST00000114664.1|Mpzl3|ENSMUSG00000070305.4|myelin protein zero-like 3 	ENSMUST00000093856.3|Mpzl3|ENSMUSG00000070305.4|myelin protein zero-like 3
mm10_v2_chr15_-_100669512_100669529	0.163385	Gli3_Zic1	ENSMUST00000182574.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2 	ENSMUST00000182775.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2
mm10_v2_chr11_-_60352869_60352905	0.163206	Gli3_Zic1	ENSMUST00000095254.5|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken) 	ENSMUST00000102683.4|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken) 	ENSMUST00000093048.6|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken) 	ENSMUST00000093046.6|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken) 	ENSMUST00000064019.8|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken) 	ENSMUST00000102682.4|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken)
mm10_v2_chr5_-_5266038_5266292	0.162338	Gli3_Zic1	ENSMUST00000115451.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14 	ENSMUST00000115452.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14 	ENSMUST00000131392.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14
mm10_v2_chr5_-_24730635_24730727	0.161282	Gli3_Zic1	ENSMUST00000068693.5|Wdr86|ENSMUSG00000055235.5|WD repeat domain 86
mm10_v2_chr10_+_127165118_127165225	0.159163	Gli3_Zic1	ENSMUST00000006914.9|B4galnt1|ENSMUSG00000006731.9|beta-1,4-N-acetyl-galactosaminyl transferase 1
mm10_v2_chr7_-_99626936_99627103	0.15882	Gli3_Zic1	ENSMUST00000178124.1|Gm4980|ENSMUSG00000096606.1|predicted gene 4980
mm10_v2_chr17_-_24650270_24650311	0.156686	Gli3_Zic1	ENSMUST00000002572.4|Slc9a3r2|ENSMUSG00000002504.8|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
mm10_v2_chr16_-_85173692_85173718	0.154787	Gli3_Zic1	ENSMUST00000005406.10|App|ENSMUSG00000022892.10|amyloid beta (A4) precursor protein
mm10_v2_chr7_+_128246953_128246993	0.154179	Gli3_Zic1	ENSMUST00000167965.1|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1
mm10_v2_chr7_+_45017953_45018009	0.154054	Gli3_Zic1	ENSMUST00000044111.7|Rras|ENSMUSG00000038387.7|Harvey rat sarcoma oncogene, subgroup R
mm10_v2_chr4_+_40948401_40948412	0.151915	Gli3_Zic1	ENSMUST00000030128.5|Chmp5|ENSMUSG00000028419.5|charged multivesicular body protein 5
mm10_v2_chr9_-_108578657_108578675	0.151782	Gli3_Zic1	ENSMUST00000068700.5|Wdr6|ENSMUSG00000066357.5|WD repeat domain 6
mm10_v2_chr1_+_191906743_191906767	0.150346	Gli3_Zic1	ENSMUST00000044954.6|Slc30a1|ENSMUSG00000037434.7|solute carrier family 30 (zinc transporter), member 1
mm10_v2_chr13_+_74121435_74121515	0.150301	Gli3_Zic1	ENSMUST00000036208.6|Slc9a3|ENSMUSG00000036123.6|solute carrier family 9 (sodium/hydrogen exchanger), member 3
mm10_v2_chr18_-_38601268_38601355	0.149164	Gli3_Zic1	ENSMUST00000025295.6|Spry4|ENSMUSG00000024427.6|sprouty homolog 4 (Drosophila)
mm10_v2_chr13_-_54611332_54611387	0.147752	Gli3_Zic1	ENSMUST00000091609.4|Cltb|ENSMUSG00000047547.8|clathrin, light polypeptide (Lcb)
mm10_v2_chr5_-_97111565_97111586	0.147401	Gli3_Zic1	ENSMUST00000112969.3|Paqr3|ENSMUSG00000055725.5|progestin and adipoQ receptor family member III
mm10_v2_chr18_-_35662180_35662195	0.14629	Gli3_Zic1	ENSMUST00000025209.4|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24 	ENSMUST00000096573.2|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24
mm10_v2_chr17_+_35135174_35135181	0.145997	Gli3_Zic1	ENSMUST00000166426.2|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000025250.7|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6
mm10_v2_chr4_+_42950369_42950445	0.145626	Gli3_Zic1	ENSMUST00000084662.5|Dnajb5|ENSMUSG00000036052.8|DnaJ (Hsp40) homolog, subfamily B, member 5
mm10_v2_chr7_+_65693447_65693477	0.144165	Gli3_Zic1	ENSMUST00000143508.1|Tm2d3|ENSMUSG00000078681.4|TM2 domain containing 3
mm10_v2_chrX_+_159697308_159697331	0.143009	Gli3_Zic1	ENSMUST00000123433.1|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1
mm10_v2_chr15_-_95528702_95528777	0.142754	Gli3_Zic1	ENSMUST00000166170.1|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr11_+_96282648_96282725	0.141747	Gli3_Zic1	ENSMUST00000168043.1|Hoxb8|ENSMUSG00000056648.4|homeobox B8
mm10_v2_chr2_-_153444441_153444492	0.141354	Gli3_Zic1	ENSMUST00000109784.1|8430427H17Rik|ENSMUSG00000061411.6|RIKEN cDNA 8430427H17 gene
mm10_v2_chrX_-_59568068_59568094	0.139909	Gli3_Zic1	ENSMUST00000119833.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13 	ENSMUST00000131319.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr3_-_89245159_89245199	0.139827	Gli3_Zic1	ENSMUST00000090924.6|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr8_-_107096510_107096562	0.139272	Gli3_Zic1	ENSMUST00000068388.8|Terf2|ENSMUSG00000031921.11|telomeric repeat binding factor 2 	ENSMUST00000133925.1|Terf2|ENSMUSG00000031921.11|telomeric repeat binding factor 2 	ENSMUST00000068421.6|Terf2|ENSMUSG00000031921.11|telomeric repeat binding factor 2 	ENSMUST00000116425.2|Terf2|ENSMUSG00000031921.11|telomeric repeat binding factor 2
mm10_v2_chr6_+_125009261_125009317	0.138951	Gli3_Zic1	ENSMUST00000112427.1|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384
mm10_v2_chr19_+_42045792_42045897	0.138809	Gli3_Zic1	ENSMUST00000172244.1|Hoga1|ENSMUSG00000025176.8|4-hydroxy-2-oxoglutarate aldolase 1 	ENSMUST00000081714.4|Hoga1|ENSMUSG00000025176.8|4-hydroxy-2-oxoglutarate aldolase 1
mm10_v2_chr4_-_133672601_133672652	0.138476	Gli3_Zic1	ENSMUST00000062118.4|Pigv|ENSMUSG00000043257.9|phosphatidylinositol glycan anchor biosynthesis, class V 	ENSMUST00000067902.6|Pigv|ENSMUSG00000043257.9|phosphatidylinositol glycan anchor biosynthesis, class V
mm10_v2_chrX_+_161717055_161717073	0.136647	Gli3_Zic1	ENSMUST00000112338.1|Rai2|ENSMUSG00000043518.7|retinoic acid induced 2
mm10_v2_chr3_-_89245005_89245031	0.135881	Gli3_Zic1	ENSMUST00000107464.1|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr8_-_105295934_105296098	0.134416	Gli3_Zic1	ENSMUST00000057855.3|Exoc3l|ENSMUSG00000043251.5|exocyst complex component 3-like
mm10_v2_chr11_-_118248507_118248571	0.134177	Gli3_Zic1	ENSMUST00000017276.7|Cyth1|ENSMUSG00000017132.11|cytohesin 1
mm10_v2_chr3_+_106547693_106547888	0.133645	Gli3_Zic1	ENSMUST00000117469.1|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2 	ENSMUST00000067630.6|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2 	ENSMUST00000134396.1|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2 	ENSMUST00000144746.1|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2 	ENSMUST00000121034.1|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2 	ENSMUST00000029507.6|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2 	ENSMUST00000132923.1|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2 	ENSMUST00000151465.1|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2
mm10_v2_chr17_+_35135196_35135243	0.131767	Gli3_Zic1	ENSMUST00000172571.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000173491.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6
mm10_v2_chr15_+_59315030_59315087	0.131754	Gli3_Zic1	ENSMUST00000022977.7|Sqle|ENSMUSG00000022351.8|squalene epoxidase
mm10_v2_chr14_-_56811716_56811716	0.130916	Gli3_Zic1	ENSMUST00000039812.9|Zmym5|ENSMUSG00000040123.10|zinc finger, MYM-type 5 	ENSMUST00000111285.2|Zmym5|ENSMUSG00000040123.10|zinc finger, MYM-type 5
mm10_v2_chr6_-_119330723_119330800	0.12999	Gli3_Zic1	ENSMUST00000068351.7|Lrtm2|ENSMUSG00000055003.8|leucine-rich repeats and transmembrane domains 2
mm10_v2_chr7_+_80186835_80186904	0.129689	Gli3_Zic1	ENSMUST00000107383.1|Sema4b|ENSMUSG00000030539.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 	ENSMUST00000032754.7|Sema4b|ENSMUSG00000030539.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm10_v2_chr19_+_6384395_6384422	0.129023	Gli3_Zic1	ENSMUST00000035269.8|Pygm|ENSMUSG00000032648.8|muscle glycogen phosphorylase 	ENSMUST00000113483.1|Pygm|ENSMUSG00000032648.8|muscle glycogen phosphorylase
mm10_v2_chr17_+_56326045_56326097	0.12889	Gli3_Zic1	ENSMUST00000139679.1|Kdm4b|ENSMUSG00000024201.6|lysine (K)-specific demethylase 4B 	ENSMUST00000025036.4|Kdm4b|ENSMUSG00000024201.6|lysine (K)-specific demethylase 4B 	ENSMUST00000086835.5|Kdm4b|ENSMUSG00000024201.6|lysine (K)-specific demethylase 4B
mm10_v2_chr13_-_9765137_9765321	0.126927	Gli3_Zic1	ENSMUST00000062658.8|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000130151.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000110636.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000152725.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr12_+_95692212_95692246	0.126821	Gli3_Zic1	ENSMUST00000057324.3|Flrt2|ENSMUSG00000047414.6|fibronectin leucine rich transmembrane protein 2
mm10_v2_chrX_-_59567348_59567472	0.126684	Gli3_Zic1	ENSMUST00000124402.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr8_-_71723308_71723357	0.126307	Gli3_Zic1	ENSMUST00000125092.1|Fcho1|ENSMUSG00000070000.7|FCH domain only 1
mm10_v2_chr1_-_170174900_170174951	0.126248	Gli3_Zic1	ENSMUST00000111351.3|Uap1|ENSMUSG00000026670.9|UDP-N-acetylglucosamine pyrophosphorylase 1 	ENSMUST00000027981.7|Uap1|ENSMUSG00000026670.9|UDP-N-acetylglucosamine pyrophosphorylase 1
mm10_v2_chr2_+_181520533_181520563	0.126116	Gli3_Zic1	ENSMUST00000108797.1|Dnajc5|ENSMUSG00000000826.10|DnaJ (Hsp40) homolog, subfamily C, member 5
mm10_v2_chr7_-_140950236_140950257	0.125611	Gli3_Zic1	ENSMUST00000026562.4|Ifitm5|ENSMUSG00000025489.4|interferon induced transmembrane protein 5
mm10_v2_chr5_-_137786681_137786715	0.125586	Gli3_Zic1	ENSMUST00000132726.1|Mepce|ENSMUSG00000029726.10|methylphosphate capping enzyme
mm10_v2_chr2_+_156840077_156840141	0.124225	Gli3_Zic1	ENSMUST00000081335.6|Tgif2|ENSMUSG00000062175.7|TGFB-induced factor homeobox 2 	ENSMUST00000073352.3|Tgif2|ENSMUSG00000062175.7|TGFB-induced factor homeobox 2
mm10_v2_chr5_-_147725988_147726023	0.124176	Gli3_Zic1	ENSMUST00000110529.1|Flt1|ENSMUSG00000029648.7|FMS-like tyrosine kinase 1 	ENSMUST00000031652.3|Flt1|ENSMUSG00000029648.7|FMS-like tyrosine kinase 1 	ENSMUST00000031653.5|Flt1|ENSMUSG00000029648.7|FMS-like tyrosine kinase 1
mm10_v2_chr11_-_102556122_102556199	0.123722	Gli3_Zic1	ENSMUST00000143842.1|Gpatch8|ENSMUSG00000034621.8|G patch domain containing 8
mm10_v2_chr8_-_105637350_105637392	0.12273	Gli3_Zic1	ENSMUST00000182863.1|Gm5914|ENSMUSG00000098120.1|predicted gene 5914
mm10_v2_chr4_-_151108454_151108576	0.122421	Gli3_Zic1	ENSMUST00000105670.1|Camta1|ENSMUSG00000014592.13|calmodulin binding transcription activator 1
mm10_v2_chr10_+_69534039_69534070	0.122082	Gli3_Zic1	ENSMUST00000182557.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr7_-_28050028_28050101	0.121531	Gli3_Zic1	ENSMUST00000032824.9|Psmc4|ENSMUSG00000030603.9|proteasome (prosome, macropain) 26S subunit, ATPase, 4
mm10_v2_chr11_+_4135167_4135222	0.119915	Gli3_Zic1	ENSMUST00000003677.4|Rnf215|ENSMUSG00000003581.8|ring finger protein 215 	ENSMUST00000145705.1|Rnf215|ENSMUSG00000003581.8|ring finger protein 215
mm10_v2_chr7_-_75308373_75308386	0.118724	Gli3_Zic1	ENSMUST00000085164.5|Sv2b|ENSMUSG00000053025.7|synaptic vesicle glycoprotein 2 b
mm10_v2_chr2_-_46442681_46442713	0.117465	Gli3_Zic1	ENSMUST00000123911.1|Gm13470|ENSMUSG00000086644.1|predicted gene 13470
mm10_v2_chr4_+_123233556_123233556	0.115463	Gli3_Zic1	ENSMUST00000040821.4|Heyl|ENSMUSG00000032744.4|hairy/enhancer-of-split related with YRPW motif-like
mm10_v2_chr5_-_118244861_118245116	0.112616	Gli3_Zic1	ENSMUST00000117177.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000133372.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000154786.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000121369.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2
mm10_v2_chr12_-_111672290_111672338	0.111105	Gli3_Zic1	ENSMUST00000001304.7|Ckb|ENSMUSG00000001270.8|creatine kinase, brain
mm10_v2_chr1_+_135729147_135729234	0.110501	Gli3_Zic1	ENSMUST00000027677.7|Csrp1|ENSMUSG00000026421.8|cysteine and glycine-rich protein 1
mm10_v2_chr9_+_104063678_104063710	0.109415	Gli3_Zic1	ENSMUST00000047799.5|Acad11|ENSMUSG00000090150.2|acyl-Coenzyme A dehydrogenase family, member 11
mm10_v2_chr10_+_80016901_80016916	0.107374	Gli3_Zic1	ENSMUST00000105373.1|Hmha1|ENSMUSG00000035697.8|histocompatibility (minor) HA-1
mm10_v2_chr4_-_41517326_41517337	0.106078	Gli3_Zic1	ENSMUST00000030152.6|1110017D15Rik|ENSMUSG00000028441.6|RIKEN cDNA 1110017D15 gene 	ENSMUST00000095126.4|1110017D15Rik|ENSMUSG00000028441.6|RIKEN cDNA 1110017D15 gene
mm10_v2_chr7_+_65693417_65693446	0.105944	Gli3_Zic1	ENSMUST00000032726.7|Tm2d3|ENSMUSG00000078681.4|TM2 domain containing 3 	ENSMUST00000107495.3|Tm2d3|ENSMUSG00000078681.4|TM2 domain containing 3
mm10_v2_chr6_+_17463826_17463829	0.104863	Gli3_Zic1	ENSMUST00000140070.1|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr2_+_129800451_129800526	0.104102	Gli3_Zic1	ENSMUST00000165413.2|Stk35|ENSMUSG00000037885.12|serine/threonine kinase 35 	ENSMUST00000166282.2|Stk35|ENSMUSG00000037885.12|serine/threonine kinase 35
mm10_v2_chr18_+_38601498_38601534	0.102263	Gli3_Zic1	ENSMUST00000097595.1|9630014M24Rik|ENSMUSG00000073576.1|RIKEN cDNA 9630014M24 gene
mm10_v2_chrX_-_74393003_74393072	0.10214	Gli3_Zic1	ENSMUST00000015427.6|Fam3a|ENSMUSG00000031399.9|family with sequence similarity 3, member A
mm10_v2_chr1_+_171270321_171270360	0.10203	Gli3_Zic1	ENSMUST00000064272.3|B4galt3|ENSMUSG00000052423.8|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3 	ENSMUST00000141999.1|B4galt3|ENSMUSG00000052423.8|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3 	ENSMUST00000111313.3|B4galt3|ENSMUSG00000052423.8|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3
mm10_v2_chr5_-_75044562_75044774	0.100045	Gli3_Zic1	ENSMUST00000075452.5|Chic2|ENSMUSG00000029229.7|cysteine-rich hydrophobic domain 2
mm10_v2_chr5_-_123721007_123721062	0.100033	Gli3_Zic1	ENSMUST00000031376.7|Zcchc8|ENSMUSG00000029427.7|zinc finger, CCHC domain containing 8
mm10_v2_chr2_+_32646586_32646602	0.0985979	Gli3_Zic1	ENSMUST00000009705.7|Eng|ENSMUSG00000026814.10|endoglin 	ENSMUST00000167841.1|Eng|ENSMUSG00000026814.10|endoglin
mm10_v2_chr15_+_78899755_78899775	0.0982188	Gli3_Zic1	ENSMUST00000001226.3|Sh3bp1|ENSMUSG00000022436.9|SH3-domain binding protein 1 	ENSMUST00000061239.7|Sh3bp1|ENSMUSG00000022436.9|SH3-domain binding protein 1 	ENSMUST00000109698.2|Sh3bp1|ENSMUSG00000022436.9|SH3-domain binding protein 1
mm10_v2_chr8_+_83608175_83608198	0.0971769	Gli3_Zic1	ENSMUST00000005620.8|Dnajb1|ENSMUSG00000005483.9|DnaJ (Hsp40) homolog, subfamily B, member 1
mm10_v2_chr7_-_19665005_19665030	0.097118	Gli3_Zic1	ENSMUST00000055242.9|Clptm1|ENSMUSG00000002981.9|cleft lip and palate associated transmembrane protein 1
mm10_v2_chr15_-_84855093_84855127	0.0959479	Gli3_Zic1	ENSMUST00000016768.5|Phf21b|ENSMUSG00000016624.9|PHD finger protein 21B
mm10_v2_chr3_+_107036156_107036181	0.0956828	Gli3_Zic1	ENSMUST00000052718.3|Kcna3|ENSMUSG00000047959.3|potassium voltage-gated channel, shaker-related subfamily, member 3
mm10_v2_chr3_-_116007399_116007411	0.0955661	Gli3_Zic1	ENSMUST00000067485.3|Slc30a7|ENSMUSG00000054414.3|solute carrier family 30 (zinc transporter), member 7
mm10_v2_chr1_-_170174957_170175001	0.0949755	Gli3_Zic1	ENSMUST00000111350.3|Uap1|ENSMUSG00000026670.9|UDP-N-acetylglucosamine pyrophosphorylase 1
mm10_v2_chr1_-_75505641_75505703	0.0940843	Gli3_Zic1	ENSMUST00000155084.1|Obsl1|ENSMUSG00000026211.11|obscurin-like 1
mm10_v2_chr9_+_120303896_120303960	0.0934732	Gli3_Zic1	ENSMUST00000048121.6|Myrip|ENSMUSG00000041794.6|myosin VIIA and Rab interacting protein
mm10_v2_chr11_+_72796164_72796246	0.0933318	Gli3_Zic1	ENSMUST00000172220.1|Zzef1|ENSMUSG00000055670.7|zinc finger, ZZ-type with EF hand domain 1
mm10_v2_chr1_-_192834719_192834719	0.0915563	Gli3_Zic1	ENSMUST00000057543.2|A730013G03Rik|ENSMUSG00000047384.2|RIKEN cDNA A730013G03 gene
mm10_v2_chr18_+_52767994_52768149	0.0908817	Gli3_Zic1	ENSMUST00000025413.7|Sncaip|ENSMUSG00000024534.9|synuclein, alpha interacting protein (synphilin) 	ENSMUST00000163742.2|Sncaip|ENSMUSG00000024534.9|synuclein, alpha interacting protein (synphilin) 	ENSMUST00000178011.1|Sncaip|ENSMUSG00000024534.9|synuclein, alpha interacting protein (synphilin)
mm10_v2_chr11_+_59948206_59948261	0.0907665	Gli3_Zic1	ENSMUST00000081980.6|Med9|ENSMUSG00000061650.6|mediator of RNA polymerase II transcription, subunit 9 homolog (yeast)
mm10_v2_chr7_+_130865756_130865812	0.0883304	Gli3_Zic1	ENSMUST00000120441.1|Plekha1|ENSMUSG00000040268.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
mm10_v2_chr13_-_67526136_67526179	0.0880631	Gli3_Zic1	ENSMUST00000181341.1|Zfp87|ENSMUSG00000097333.1|zinc finger protein 87 	ENSMUST00000181767.1|Zfp87|ENSMUSG00000097333.1|zinc finger protein 87 	ENSMUST00000181573.1|Zfp87|ENSMUSG00000097333.1|zinc finger protein 87
mm10_v2_chr3_-_92485886_92485901	0.0875914	Gli3_Zic1	ENSMUST00000054599.7|Sprr1a|ENSMUSG00000050359.7|small proline-rich protein 1A
mm10_v2_chr5_-_137786651_137786668	0.0871606	Gli3_Zic1	ENSMUST00000031740.9|Mepce|ENSMUSG00000029726.10|methylphosphate capping enzyme
mm10_v2_chr3_+_116007457_116007540	0.0863195	Gli3_Zic1	ENSMUST00000029575.5|Extl2|ENSMUSG00000027963.8|exostoses (multiple)-like 2 	ENSMUST00000106501.1|Extl2|ENSMUSG00000027963.8|exostoses (multiple)-like 2
mm10_v2_chr16_+_52031549_52031570	0.0851409	Gli3_Zic1	ENSMUST00000114471.1|Cblb|ENSMUSG00000022637.10|Casitas B-lineage lymphoma b
mm10_v2_chr19_-_41263931_41264008	0.0843598	Gli3_Zic1	ENSMUST00000025989.8|Tm9sf3|ENSMUSG00000025016.10|transmembrane 9 superfamily member 3
mm10_v2_chr4_+_117096049_117096083	0.0834303	Gli3_Zic1	ENSMUST00000030443.5|Ptch2|ENSMUSG00000028681.5|patched homolog 2
mm10_v2_chr17_+_4994904_4995074	0.0833316	Gli3_Zic1	ENSMUST00000092723.4|Arid1b|ENSMUSG00000069729.7|AT rich interactive domain 1B (SWI-like) 	ENSMUST00000115797.2|Arid1b|ENSMUSG00000069729.7|AT rich interactive domain 1B (SWI-like)
mm10_v2_chr2_-_77170534_77170576	0.0815584	Gli3_Zic1	ENSMUST00000111833.2|Ccdc141|ENSMUSG00000044033.10|coiled-coil domain containing 141
mm10_v2_chr5_-_114380505_114380520	0.081037	Gli3_Zic1	ENSMUST00000102581.4|Kctd10|ENSMUSG00000001098.9|potassium channel tetramerisation domain containing 10
mm10_v2_chr11_-_118248590_118248607	0.0804731	Gli3_Zic1	ENSMUST00000106305.2|Cyth1|ENSMUSG00000017132.11|cytohesin 1
mm10_v2_chr1_-_22805994_22806007	0.0784712	Gli3_Zic1	ENSMUST00000097808.4|Rims1|ENSMUSG00000041670.9|regulating synaptic membrane exocytosis 1
mm10_v2_chr8_-_69887687_69887687	0.0762164	Gli3_Zic1	ENSMUST00000057831.7|Cilp2|ENSMUSG00000044006.8|cartilage intermediate layer protein 2
mm10_v2_chr1_+_131827977_131828019	0.0761382	Gli3_Zic1	ENSMUST00000086559.6|Slc41a1|ENSMUSG00000013275.9|solute carrier family 41, member 1
mm10_v2_chr16_-_32247152_32247179	0.0756695	Gli3_Zic1	ENSMUST00000042732.5|Fbxo45|ENSMUSG00000035764.5|F-box protein 45
mm10_v2_chr18_+_62180119_62180182	0.0755779	Gli3_Zic1	ENSMUST00000067743.1|Gm9949|ENSMUSG00000054589.1|predicted gene 9949
mm10_v2_chr10_+_26078255_26078255	0.0748946	Gli3_Zic1	ENSMUST00000041011.3|Gm9767|ENSMUSG00000039098.3|predicted gene 9767
mm10_v2_chr4_-_123750236_123750345	0.0747536	Gli3_Zic1	ENSMUST00000102636.3|Akirin1|ENSMUSG00000023075.9|akirin 1
mm10_v2_chr7_-_79131018_79131018	0.0744132	Gli3_Zic1	ENSMUST00000032827.7|Hapln3|ENSMUSG00000030606.7|hyaluronan and proteoglycan link protein 3
mm10_v2_chr11_+_101331069_101331069	0.0743486	Gli3_Zic1	ENSMUST00000017316.6|Aoc3|ENSMUSG00000019326.8|amine oxidase, copper containing 3
mm10_v2_chr14_-_56811464_56811464	0.0737507	Gli3_Zic1	ENSMUST00000173954.1|Zmym5|ENSMUSG00000040123.10|zinc finger, MYM-type 5
mm10_v2_chr10_-_79788924_79788985	0.0736606	Gli3_Zic1	ENSMUST00000020573.6|Prss57|ENSMUSG00000020323.8|protease, serine 57
mm10_v2_chr8_-_13890233_13890300	0.0730115	Gli3_Zic1	ENSMUST00000033839.7|Coprs|ENSMUSG00000031458.7|coordinator of PRMT5, differentiation stimulator
mm10_v2_chr7_+_127485221_127485221	0.0728229	Gli3_Zic1	ENSMUST00000048896.6|Fbrs|ENSMUSG00000042423.7|fibrosin
mm10_v2_chr3_-_145032765_145032781	0.0724854	Gli3_Zic1	ENSMUST00000029919.5|Clca3|ENSMUSG00000028255.5|chloride channel calcium activated 3
mm10_v2_chr5_+_123394782_123394826	0.0720382	Gli3_Zic1	ENSMUST00000111596.1|Mlxip|ENSMUSG00000038342.9|MLX interacting protein 	ENSMUST00000068237.5|Mlxip|ENSMUSG00000038342.9|MLX interacting protein
mm10_v2_chr11_+_72796254_72796268	0.0707342	Gli3_Zic1	ENSMUST00000069395.5|Zzef1|ENSMUSG00000055670.7|zinc finger, ZZ-type with EF hand domain 1
mm10_v2_chr4_-_129742275_129742312	0.070633	Gli3_Zic1	ENSMUST00000066257.5|Khdrbs1|ENSMUSG00000028790.7|KH domain containing, RNA binding, signal transduction associated 1
mm10_v2_chr5_+_35814424_35814453	0.070054	Gli3_Zic1	ENSMUST00000114203.1|Ablim2|ENSMUSG00000029095.11|actin-binding LIM protein 2
mm10_v2_chr10_-_52382074_52382142	0.0692875	Gli3_Zic1	ENSMUST00000020008.8|Gopc|ENSMUSG00000019861.8|golgi associated PDZ and coiled-coil motif containing 	ENSMUST00000105475.2|Gopc|ENSMUSG00000019861.8|golgi associated PDZ and coiled-coil motif containing
mm10_v2_chr16_-_46496955_46496986	0.0689878	Gli3_Zic1	ENSMUST00000023335.6|Pvrl3|ENSMUSG00000022656.9|poliovirus receptor-related 3 	ENSMUST00000023334.8|Pvrl3|ENSMUSG00000022656.9|poliovirus receptor-related 3
mm10_v2_chr7_+_127769809_127769854	0.0651661	Gli3_Zic1	ENSMUST00000118865.1|Orai3|ENSMUSG00000043964.8|ORAI calcium release-activated calcium modulator 3 	ENSMUST00000061587.6|Orai3|ENSMUSG00000043964.8|ORAI calcium release-activated calcium modulator 3 	ENSMUST00000121504.1|Orai3|ENSMUSG00000043964.8|ORAI calcium release-activated calcium modulator 3
mm10_v2_chr9_+_80067452_80067493	0.0647427	Gli3_Zic1	ENSMUST00000165607.2|Senp6|ENSMUSG00000034252.8|SUMO/sentrin specific peptidase 6
mm10_v2_chr11_+_85311232_85311286	0.062997	Gli3_Zic1	ENSMUST00000020835.9|Ppm1d|ENSMUSG00000020525.11|protein phosphatase 1D magnesium-dependent, delta isoform
mm10_v2_chr8_+_68880491_68880564	0.0625311	Gli3_Zic1	ENSMUST00000015712.8|Lpl|ENSMUSG00000015568.9|lipoprotein lipase
mm10_v2_chr8_+_104867488_104867488	0.062051	Gli3_Zic1	ENSMUST00000043209.9|Ces2d-ps|ENSMUSG00000031884.9|carboxylesterase 2D, pseudogene
mm10_v2_chrX_+_152144240_152144272	0.0619065	Gli3_Zic1	ENSMUST00000168786.1|Iqsec2|ENSMUSG00000041115.10|IQ motif and Sec7 domain 2 	ENSMUST00000112605.1|Iqsec2|ENSMUSG00000041115.10|IQ motif and Sec7 domain 2 	ENSMUST00000112604.1|Iqsec2|ENSMUSG00000041115.10|IQ motif and Sec7 domain 2
mm10_v2_chr16_-_46496772_46496883	0.0612241	Gli3_Zic1	ENSMUST00000149901.1|Pvrl3|ENSMUSG00000022656.9|poliovirus receptor-related 3 	ENSMUST00000096052.2|Pvrl3|ENSMUSG00000022656.9|poliovirus receptor-related 3
mm10_v2_chr4_+_12089373_12089441	0.059912	Gli3_Zic1	ENSMUST00000095143.2|Rbm12b2|ENSMUSG00000052137.5|RNA binding motif protein 12 B2 	ENSMUST00000063839.5|Rbm12b2|ENSMUSG00000052137.5|RNA binding motif protein 12 B2
mm10_v2_chr7_+_130865835_130865942	0.0582578	Gli3_Zic1	ENSMUST00000075181.4|Plekha1|ENSMUSG00000040268.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 	ENSMUST00000048180.5|Plekha1|ENSMUSG00000040268.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
mm10_v2_chr15_-_99820072_99820154	0.0581749	Gli3_Zic1	ENSMUST00000109024.2|Lima1|ENSMUSG00000023022.7|LIM domain and actin binding 1
mm10_v2_chr13_-_58385190_58385242	0.0580692	Gli3_Zic1	ENSMUST00000022032.5|2210016F16Rik|ENSMUSG00000021550.5|RIKEN cDNA 2210016F16 gene
mm10_v2_chr6_-_3763618_3763629	0.0557866	Gli3_Zic1	ENSMUST00000171613.1|Calcr|ENSMUSG00000023964.9|calcitonin receptor
mm10_v2_chr9_-_110743653_110743686	0.0553211	Gli3_Zic1	ENSMUST00000166716.1|Pth1r|ENSMUSG00000032492.8|parathyroid hormone 1 receptor
mm10_v2_chr12_+_55565188_55565257	0.0553174	Gli3_Zic1	ENSMUST00000080123.1|Aldoart2|ENSMUSG00000063129.1|aldolase 1 A, retrogene 2
mm10_v2_chr10_-_19015347_19015410	0.0553008	Gli3_Zic1	ENSMUST00000019997.4|Tnfaip3|ENSMUSG00000019850.5|tumor necrosis factor, alpha-induced protein 3
mm10_v2_chr4_+_12140263_12140317	0.0551446	Gli3_Zic1	ENSMUST00000050069.2|Rbm12b1|ENSMUSG00000046667.8|RNA binding motif protein 12 B1 	ENSMUST00000069128.7|Rbm12b1|ENSMUSG00000046667.8|RNA binding motif protein 12 B1
mm10_v2_chr19_+_55316313_55316367	0.0544898	Gli3_Zic1	ENSMUST00000095950.2|Vti1a|ENSMUSG00000024983.9|vesicle transport through interaction with t-SNAREs 1A
mm10_v2_chr11_+_95843226_95843239	0.0539232	Gli3_Zic1	ENSMUST00000107709.1|Gngt2|ENSMUSG00000038811.7|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2
mm10_v2_chr1_+_17601893_17601913	0.053	Gli3_Zic1	ENSMUST00000088476.2|Pi15|ENSMUSG00000067780.2|peptidase inhibitor 15
mm10_v2_chr17_-_24718051_24718062	0.0525848	Gli3_Zic1	ENSMUST00000008626.8|Rnf151|ENSMUSG00000008482.8|ring finger protein 151
mm10_v2_chr13_-_9764943_9764994	0.0524528	Gli3_Zic1	ENSMUST00000110634.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr8_+_120002720_120002741	0.0502929	Gli3_Zic1	ENSMUST00000108972.3|Crispld2|ENSMUSG00000031825.10|cysteine-rich secretory protein LCCL domain containing 2
mm10_v2_chr8_-_124897685_124897757	0.0493267	Gli3_Zic1	ENSMUST00000098312.2|Exoc8|ENSMUSG00000074030.2|exocyst complex component 8
mm10_v2_chr15_-_100669535_100669560	0.0490279	Gli3_Zic1	ENSMUST00000183211.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2
mm10_v2_chr11_+_60479915_60479915	0.0485589	Gli3_Zic1	ENSMUST00000126522.1|Myo15|ENSMUSG00000042678.10|myosin XV
mm10_v2_chr5_+_5573952_5574013	0.0482022	Gli3_Zic1	ENSMUST00000101627.2|Gm8773|ENSMUSG00000073234.2|predicted gene 8773
mm10_v2_chr2_+_118900377_118900397	0.0479664	Gli3_Zic1	ENSMUST00000151162.1|Bahd1|ENSMUSG00000040007.8|bromo adjacent homology domain containing 1
mm10_v2_chr10_-_127341583_127341614	0.0478661	Gli3_Zic1	ENSMUST00000026474.3|Gli1|ENSMUSG00000025407.6|GLI-Kruppel family member GLI1
mm10_v2_chr10_+_127063527_127063538	0.0476329	Gli3_Zic1	ENSMUST00000006911.5|Cdk4|ENSMUSG00000006728.6|cyclin-dependent kinase 4
mm10_v2_chr12_-_80436571_80436603	0.0475822	Gli3_Zic1	ENSMUST00000054145.6|Dcaf5|ENSMUSG00000049106.6|DDB1 and CUL4 associated factor 5
mm10_v2_chr3_+_45378396_45378413	0.0466508	Gli3_Zic1	ENSMUST00000166126.1|Pcdh10|ENSMUSG00000049100.9|protocadherin 10 	ENSMUST00000170695.1|Pcdh10|ENSMUSG00000049100.9|protocadherin 10 	ENSMUST00000171554.1|Pcdh10|ENSMUSG00000049100.9|protocadherin 10
mm10_v2_chr7_-_142372210_142372292	0.0460377	Gli3_Zic1	ENSMUST00000084412.5|Ifitm10|ENSMUSG00000045777.8|interferon induced transmembrane protein 10
mm10_v2_chr9_+_80066895_80066936	0.0442522	Gli3_Zic1	ENSMUST00000037484.8|Senp6|ENSMUSG00000034252.8|SUMO/sentrin specific peptidase 6 	ENSMUST00000176640.1|Senp6|ENSMUSG00000034252.8|SUMO/sentrin specific peptidase 6
mm10_v2_chr5_-_5514730_5514830	0.0430221	Gli3_Zic1	ENSMUST00000115445.1|Cldn12|ENSMUSG00000046798.8|claudin 12 	ENSMUST00000179804.1|Cldn12|ENSMUSG00000046798.8|claudin 12 	ENSMUST00000125110.1|Cldn12|ENSMUSG00000046798.8|claudin 12 	ENSMUST00000115446.1|Cldn12|ENSMUSG00000046798.8|claudin 12
mm10_v2_chr10_+_80016653_80016733	0.0427594	Gli3_Zic1	ENSMUST00000099501.3|Hmha1|ENSMUSG00000035697.8|histocompatibility (minor) HA-1
mm10_v2_chr13_-_49320219_49320311	0.0424349	Gli3_Zic1	ENSMUST00000110086.1|Fgd3|ENSMUSG00000037946.5|FYVE, RhoGEF and PH domain containing 3
mm10_v2_chr3_-_30509681_30509746	0.0423747	Gli3_Zic1	ENSMUST00000173495.1|Mecom|ENSMUSG00000027684.10|MDS1 and EVI1 complex locus
mm10_v2_chrX_+_36874351_36874368	0.0420353	Gli3_Zic1	ENSMUST00000016452.7|Ube2a|ENSMUSG00000016308.9|ubiquitin-conjugating enzyme E2A
mm10_v2_chrX_-_150812932_150813154	0.0414099	Gli3_Zic1	ENSMUST00000131241.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000147152.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000143843.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2
mm10_v2_chr11_+_77982710_77982823	0.0413531	Gli3_Zic1	ENSMUST00000108360.1|Phf12|ENSMUSG00000037791.9|PHD finger protein 12 	ENSMUST00000049167.7|Phf12|ENSMUSG00000037791.9|PHD finger protein 12
mm10_v2_chr6_+_149408973_149409038	0.0406576	Gli3_Zic1	ENSMUST00000086829.4|Bicd1|ENSMUSG00000003452.9|bicaudal D homolog 1 (Drosophila) 	ENSMUST00000111513.2|Bicd1|ENSMUSG00000003452.9|bicaudal D homolog 1 (Drosophila)
mm10_v2_chr17_+_15010266_15010266	0.0406024	Gli3_Zic1	ENSMUST00000097395.3|Gm3435|ENSMUSG00000079709.2|predicted gene 3435
mm10_v2_chr17_+_35135695_35135781	0.0405638	Gli3_Zic1	ENSMUST00000174478.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000174281.2|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000173550.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6
mm10_v2_chr6_+_91684061_91684132	0.0401616	Gli3_Zic1	ENSMUST00000032185.7|Slc6a6|ENSMUSG00000030096.7|solute carrier family 6 (neurotransmitter transporter, taurine), member 6
mm10_v2_chr4_+_43957678_43957735	0.0401197	Gli3_Zic1	ENSMUST00000107855.1|Glipr2|ENSMUSG00000028480.8|GLI pathogenesis-related 2
mm10_v2_chr5_+_143370092_143370118	0.0399688	Gli3_Zic1	ENSMUST00000120825.1|Grid2ip|ENSMUSG00000010825.11|glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1
mm10_v2_chr4_+_119733784_119733806	0.039839	Gli3_Zic1	ENSMUST00000084306.4|Hivep3|ENSMUSG00000078582.3|human immunodeficiency virus type I enhancer binding protein 3
mm10_v2_chr10_-_120979327_120979373	0.0392964	Gli3_Zic1	ENSMUST00000119944.1|Lemd3|ENSMUSG00000048661.8|LEM domain containing 3 	ENSMUST00000119093.1|Lemd3|ENSMUSG00000048661.8|LEM domain containing 3
mm10_v2_chr5_-_5514873_5514891	0.0390109	Gli3_Zic1	ENSMUST00000060947.7|Cldn12|ENSMUSG00000046798.8|claudin 12
mm10_v2_chr4_-_126202757_126202762	0.038145	Gli3_Zic1	ENSMUST00000080919.5|Thrap3|ENSMUSG00000043962.10|thyroid hormone receptor associated protein 3
mm10_v2_chr17_-_34862122_34862238	0.0381286	Gli3_Zic1	ENSMUST00000154526.1|Cfb|ENSMUSG00000090231.4|complement factor B
mm10_v2_chr1_-_133907053_133907172	0.036425	Gli3_Zic1	ENSMUST00000149380.1|Optc|ENSMUSG00000010311.9|opticin 	ENSMUST00000124051.2|Optc|ENSMUSG00000010311.9|opticin
mm10_v2_chr16_-_96082389_96082481	0.0361491	Gli3_Zic1	ENSMUST00000099502.2|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1 	ENSMUST00000023631.8|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1 	ENSMUST00000113829.1|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1 	ENSMUST00000153398.1|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1
mm10_v2_chr10_-_67548944_67549001	0.0355154	Gli3_Zic1	ENSMUST00000075686.4|Ado|ENSMUSG00000057134.4|2-aminoethanethiol (cysteamine) dioxygenase
mm10_v2_chr17_+_15041641_15041641	0.0353783	Gli3_Zic1	ENSMUST00000097393.3|Ermard|ENSMUSG00000036552.10|ER membrane associated RNA degradation
mm10_v2_chr5_+_3803160_3803193	0.0338487	Gli3_Zic1	ENSMUST00000171023.1|Krit1|ENSMUSG00000000600.9|KRIT1, ankyrin repeat containing 	ENSMUST00000080085.4|Krit1|ENSMUSG00000000600.9|KRIT1, ankyrin repeat containing
mm10_v2_chr1_+_167598384_167598411	0.0336961	Gli3_Zic1	ENSMUST00000015987.3|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma
mm10_v2_chr5_-_142530041_142530084	0.0335031	Gli3_Zic1	ENSMUST00000099400.2|Papolb|ENSMUSG00000074817.2|poly (A) polymerase beta (testis specific)
mm10_v2_chr2_-_150668198_150668258	0.0332438	Gli3_Zic1	ENSMUST00000028944.3|Acss1|ENSMUSG00000027452.5|acyl-CoA synthetase short-chain family member 1
mm10_v2_chr1_-_133906973_133907014	0.0330639	Gli3_Zic1	ENSMUST00000126123.1|Optc|ENSMUSG00000010311.9|opticin
mm10_v2_chr4_-_147848358_147848425	0.032933	Gli3_Zic1	ENSMUST00000105718.1|Zfp933|ENSMUSG00000059423.7|zinc finger protein 933 	ENSMUST00000135798.1|Zfp933|ENSMUSG00000059423.7|zinc finger protein 933
mm10_v2_chr5_+_118245226_118245289	0.0325324	Gli3_Zic1	ENSMUST00000049138.7|2410131K14Rik|ENSMUSG00000032840.7|RIKEN cDNA 2410131K14 gene
mm10_v2_chr7_-_109438998_109439017	0.0318339	Gli3_Zic1	ENSMUST00000121378.1|Stk33|ENSMUSG00000031027.9|serine/threonine kinase 33
mm10_v2_chr10_-_77113676_77113705	0.0293964	Gli3_Zic1	ENSMUST00000072755.4|Col18a1|ENSMUSG00000001435.8|collagen, type XVIII, alpha 1 	ENSMUST00000105409.1|Col18a1|ENSMUSG00000001435.8|collagen, type XVIII, alpha 1
mm10_v2_chr11_+_73018986_73019047	0.029321	Gli3_Zic1	ENSMUST00000092937.6|Camkk1|ENSMUSG00000020785.11|calcium/calmodulin-dependent protein kinase kinase 1, alpha
mm10_v2_chr1_+_167001457_167001471	0.028532	Gli3_Zic1	ENSMUST00000126198.1|Fam78b|ENSMUSG00000060568.8|family with sequence similarity 78, member B
mm10_v2_chr7_+_128129536_128129574	0.0284851	Gli3_Zic1	ENSMUST00000033053.6|Itgax|ENSMUSG00000030789.8|integrin alpha X
mm10_v2_chr13_-_56895737_56895793	0.0268921	Gli3_Zic1	ENSMUST00000022023.6|Trpc7|ENSMUSG00000021541.7|transient receptor potential cation channel, subfamily C, member 7 	ENSMUST00000109871.1|Trpc7|ENSMUSG00000021541.7|transient receptor potential cation channel, subfamily C, member 7
mm10_v2_chr8_+_23139030_23139061	0.0268081	Gli3_Zic1	ENSMUST00000121075.1|Ank1|ENSMUSG00000031543.12|ankyrin 1, erythroid
mm10_v2_chr5_-_97111589_97111632	0.0266846	Gli3_Zic1	ENSMUST00000069453.2|Paqr3|ENSMUSG00000055725.5|progestin and adipoQ receptor family member III 	ENSMUST00000112968.1|Paqr3|ENSMUSG00000055725.5|progestin and adipoQ receptor family member III
mm10_v2_chrX_+_18162575_18162657	0.026427	Gli3_Zic1	ENSMUST00000044484.6|Kdm6a|ENSMUSG00000037369.10|lysine (K)-specific demethylase 6A 	ENSMUST00000052368.8|Kdm6a|ENSMUSG00000037369.10|lysine (K)-specific demethylase 6A
mm10_v2_chr6_+_29694204_29694250	0.0252987	Gli3_Zic1	ENSMUST00000046750.7|Tspan33|ENSMUSG00000001763.8|tetraspanin 33 	ENSMUST00000115250.3|Tspan33|ENSMUSG00000001763.8|tetraspanin 33
mm10_v2_chr8_-_34146974_34147033	0.0250999	Gli3_Zic1	ENSMUST00000033910.8|Leprotl1|ENSMUSG00000031513.8|leptin receptor overlapping transcript-like 1
mm10_v2_chr17_-_15041457_15041559	0.0250441	Gli3_Zic1	ENSMUST00000097400.4|Gm3448|ENSMUSG00000079710.3|predicted gene 3448 	ENSMUST00000097398.4|Tcte3|ENSMUSG00000079707.3|t-complex-associated testis expressed 3 	ENSMUST00000040746.6|Tcte3|ENSMUSG00000079707.3|t-complex-associated testis expressed 3
mm10_v2_chr7_-_66689589_66689603	0.0249056	Gli3_Zic1	ENSMUST00000124899.1|Asb7|ENSMUSG00000030509.10|ankyrin repeat and SOCS box-containing 7
mm10_v2_chr3_-_106547726_106547802	0.0244812	Gli3_Zic1	ENSMUST00000039153.7|Cept1|ENSMUSG00000040774.9|choline/ethanolaminephosphotransferase 1 	ENSMUST00000148269.1|Cept1|ENSMUSG00000040774.9|choline/ethanolaminephosphotransferase 1 	ENSMUST00000068301.4|Cept1|ENSMUSG00000040774.9|choline/ethanolaminephosphotransferase 1
mm10_v2_chr6_-_24664960_24665038	0.0229	Gli3_Zic1	ENSMUST00000041737.7|Wasl|ENSMUSG00000029684.8|Wiskott-Aldrich syndrome-like (human) 	ENSMUST00000031695.8|Wasl|ENSMUSG00000029684.8|Wiskott-Aldrich syndrome-like (human)
mm10_v2_chr16_+_17894197_17894232	0.022725	Gli3_Zic1	ENSMUST00000046937.2|Tssk1|ENSMUSG00000041566.2|testis-specific serine kinase 1
mm10_v2_chr12_+_73997749_73997817	0.0222713	Gli3_Zic1	ENSMUST00000110451.2|Syt16|ENSMUSG00000044912.9|synaptotagmin XVI
mm10_v2_chr13_+_81783220_81783307	0.0214553	Gli3_Zic1	ENSMUST00000022009.8|Cetn3|ENSMUSG00000021537.8|centrin 3
mm10_v2_chr13_-_63431683_63431733	0.0194617	Gli3_Zic1	ENSMUST00000160931.1|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C 	ENSMUST00000099444.3|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C 	ENSMUST00000161977.1|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C 	ENSMUST00000163091.1|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C
mm10_v2_chr9_-_107605295_107605402	0.0190423	Gli3_Zic1	ENSMUST00000102529.3|Sema3b|ENSMUSG00000057969.9|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
mm10_v2_chr14_+_33589238_33589270	0.0189833	Gli3_Zic1	ENSMUST00000022508.6|Ptpn20|ENSMUSG00000021940.9|protein tyrosine phosphatase, non-receptor type 20
mm10_v2_chr15_+_82147238_82147275	0.017628	Gli3_Zic1	ENSMUST00000023100.6|Srebf2|ENSMUSG00000022463.7|sterol regulatory element binding factor 2
mm10_v2_chr12_-_31351368_31351437	0.0151598	Gli3_Zic1	ENSMUST00000110857.3|Dld|ENSMUSG00000020664.9|dihydrolipoamide dehydrogenase
mm10_v2_chr9_+_21616230_21616281	0.0150644	Gli3_Zic1	ENSMUST00000174008.1|Smarca4|ENSMUSG00000032187.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm10_v2_chr4_-_120287349_120287349	0.0150537	Gli3_Zic1	ENSMUST00000102656.3|Foxo6|ENSMUSG00000052135.8|forkhead box O6
mm10_v2_chr13_+_54575008_54575017	0.0147845	Gli3_Zic1	ENSMUST00000026988.4|Arl10|ENSMUSG00000025870.4|ADP-ribosylation factor-like 10
mm10_v2_chr8_-_85025268_85025296	0.0131515	Gli3_Zic1	ENSMUST00000064314.8|Asna1|ENSMUSG00000052456.8|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)
mm10_v2_chr11_-_69544556_69544556	0.0128267	Gli3_Zic1	ENSMUST00000035539.5|Dnah2|ENSMUSG00000005237.7|dynein, axonemal, heavy chain 2
mm10_v2_chr9_+_122572493_122572511	0.0127902	Gli3_Zic1	ENSMUST00000181682.1|9530059O14Rik|ENSMUSG00000097736.1|RIKEN cDNA 9530059O14 gene 	ENSMUST00000181107.1|9530059O14Rik|ENSMUSG00000097736.1|RIKEN cDNA 9530059O14 gene 	ENSMUST00000181719.1|9530059O14Rik|ENSMUSG00000097736.1|RIKEN cDNA 9530059O14 gene
mm10_v2_chr3_-_95904683_95904692	0.0126724	Gli3_Zic1	ENSMUST00000147962.1|Car14|ENSMUSG00000038526.8|carbonic anhydrase 14 	ENSMUST00000036181.8|Car14|ENSMUSG00000038526.8|carbonic anhydrase 14
mm10_v2_chrX_-_9662950_9663003	0.0115613	Gli3_Zic1	ENSMUST00000033519.2|Dynlt3|ENSMUSG00000031176.2|dynein light chain Tctex-type 3
mm10_v2_chr7_-_142656018_142656058	0.0114051	Gli3_Zic1	ENSMUST00000178921.1|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2
mm10_v2_chr6_+_114403825_114403825	0.0111587	Gli3_Zic1	ENSMUST00000161220.1|Hrh1|ENSMUSG00000053004.8|histamine receptor H1
mm10_v2_chr9_+_21616166_21616177	0.010665	Gli3_Zic1	ENSMUST00000034707.8|Smarca4|ENSMUSG00000032187.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 	ENSMUST00000098948.3|Smarca4|ENSMUSG00000032187.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm10_v2_chr17_+_33432890_33432911	0.0103107	Gli3_Zic1	ENSMUST00000174088.2|Actl9|ENSMUSG00000092519.2|actin-like 9
mm10_v2_chr19_+_5878622_5878656	0.0102276	Gli3_Zic1	ENSMUST00000136833.1|Slc25a45|ENSMUSG00000024818.8|solute carrier family 25, member 45 	ENSMUST00000141362.1|Slc25a45|ENSMUSG00000024818.8|solute carrier family 25, member 45
mm10_v2_chr17_+_86963077_86963094	0.00999455	Gli3_Zic1	ENSMUST00000024956.8|Rhoq|ENSMUSG00000024143.8|ras homolog gene family, member Q
mm10_v2_chr17_-_44735612_44735710	0.00745366	Gli3_Zic1	ENSMUST00000162373.1|Runx2|ENSMUSG00000039153.10|runt related transcription factor 2 	ENSMUST00000162878.1|Runx2|ENSMUSG00000039153.10|runt related transcription factor 2
mm10_v2_chr7_+_99268338_99268388	0.00708358	Gli3_Zic1	ENSMUST00000107100.2|Map6|ENSMUSG00000055407.7|microtubule-associated protein 6
mm10_v2_chr8_+_123117354_123117379	0.00639597	Gli3_Zic1	ENSMUST00000037900.8|Cpne7|ENSMUSG00000034796.8|copine VII
mm10_v2_chr11_-_30268169_30268191	0.00629044	Gli3_Zic1	ENSMUST00000006629.7|Sptbn1|ENSMUSG00000020315.12|spectrin beta, non-erythrocytic 1
mm10_v2_chr13_+_54949388_54949481	0.00586642	Gli3_Zic1	ENSMUST00000026994.7|Unc5a|ENSMUSG00000025876.9|unc-5 homolog A (C. elegans) 	ENSMUST00000109994.2|Unc5a|ENSMUSG00000025876.9|unc-5 homolog A (C. elegans)
mm10_v2_chr12_+_59066908_59066931	0.00515468	Gli3_Zic1	ENSMUST00000021381.4|Pnn|ENSMUSG00000020994.4|pinin
mm10_v2_chrX_-_8193387_8193512	0.00431462	Gli3_Zic1	ENSMUST00000143223.1|Ebp|ENSMUSG00000031168.8|phenylalkylamine Ca2+ antagonist (emopamil) binding protein 	ENSMUST00000033509.8|Ebp|ENSMUSG00000031168.8|phenylalkylamine Ca2+ antagonist (emopamil) binding protein
mm10_v2_chr6_+_115853470_115853598	0.00279081	Gli3_Zic1	ENSMUST00000112925.1|Ift122|ENSMUSG00000030323.7|intraflagellar transport 122 	ENSMUST00000112923.1|Ift122|ENSMUSG00000030323.7|intraflagellar transport 122 	ENSMUST00000038234.6|Ift122|ENSMUSG00000030323.7|intraflagellar transport 122
mm10_v2_chr7_+_141216626_141216700	0.00242732	Gli3_Zic1	ENSMUST00000141804.1|Rassf7|ENSMUSG00000038618.5|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7 	ENSMUST00000148975.1|Rassf7|ENSMUSG00000038618.5|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
mm10_v2_chr17_-_65772686_65772752	0.00125534	Gli3_Zic1	ENSMUST00000070673.7|Rab31|ENSMUSG00000056515.8|RAB31, member RAS oncogene family
mm10_v2_chr1_-_56972437_56972502	0.000994787	Gli3_Zic1	ENSMUST00000042857.7|Satb2|ENSMUSG00000038331.9|special AT-rich sequence binding protein 2
mm10_v2_chr6_+_47877204_47877204	0.000954931	Gli3_Zic1	ENSMUST00000061890.7|Zfp282|ENSMUSG00000025821.9|zinc finger protein 282
mm10_v2_chr13_-_63431737_63431755	0.000323149	Gli3_Zic1	ENSMUST00000073029.5|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C
