mm10_v2_chr19_+_5406815_5406880	0.198688	Hoxa11_Hoxc12	ENSMUST00000174412.1|4930481A15Rik|ENSMUSG00000086938.2|RIKEN cDNA 4930481A15 gene 	ENSMUST00000153017.2|4930481A15Rik|ENSMUSG00000086938.2|RIKEN cDNA 4930481A15 gene
mm10_v2_chr11_-_62457772_62457835	0.165966	Hoxa11_Hoxc12	ENSMUST00000127471.2|Ncor1|ENSMUSG00000018501.11|nuclear receptor co-repressor 1
mm10_v2_chr3_+_81996922_81996922	0.15198	Hoxa11_Hoxc12	ENSMUST00000029641.3|Asic5|ENSMUSG00000028008.4|acid-sensing (proton-gated) ion channel family member 5
mm10_v2_chr9_-_50659780_50659801	0.14588	Hoxa11_Hoxc12	ENSMUST00000034567.3|Dlat|ENSMUSG00000000168.3|dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)
mm10_v2_chr7_-_120145286_120145292	0.135267	Hoxa11_Hoxc12	ENSMUST00000033207.4|Zp2|ENSMUSG00000030911.6|zona pellucida glycoprotein 2
mm10_v2_chr2_-_26516620_26516663	0.112592	Hoxa11_Hoxc12	ENSMUST00000132820.1|Notch1|ENSMUSG00000026923.9|notch 1
mm10_v2_chr18_+_37655891_37655915	0.104028	Hoxa11_Hoxc12	ENSMUST00000097608.2|3222401L13Rik|ENSMUSG00000073590.2|RIKEN cDNA 3222401L13 gene
mm10_v2_chr10_-_67912620_67912685	0.103943	Hoxa11_Hoxc12	ENSMUST00000064656.7|Zfp365|ENSMUSG00000037855.9|zinc finger protein 365
mm10_v2_chr13_+_58281183_58281196	0.0984123	Hoxa11_Hoxc12	ENSMUST00000180882.1|Gm26555|ENSMUSG00000097399.1|predicted gene, 26555 	ENSMUST00000180452.1|Gm26555|ENSMUSG00000097399.1|predicted gene, 26555
mm10_v2_chrX_-_7319291_7319358	0.0960441	Hoxa11_Hoxc12	ENSMUST00000128319.1|Clcn5|ENSMUSG00000004317.8|chloride channel 5
mm10_v2_chr1_+_136683375_136683410	0.0891939	Hoxa11_Hoxc12	ENSMUST00000181524.1|Gm19705|ENSMUSG00000097113.1|predicted gene, 19705
mm10_v2_chr5_-_123666682_123666695	0.0877396	Hoxa11_Hoxc12	ENSMUST00000149410.1|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1
mm10_v2_chr7_-_46795661_46795722	0.0866736	Hoxa11_Hoxc12	ENSMUST00000123725.1|Hps5|ENSMUSG00000014418.9|Hermansky-Pudlak syndrome 5 homolog (human)
mm10_v2_chr3_+_129532386_129532440	0.0835278	Hoxa11_Hoxc12	ENSMUST00000071402.2|Elovl6|ENSMUSG00000041220.6|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm10_v2_chr17_-_21845759_21845759	0.0823775	Hoxa11_Hoxc12	ENSMUST00000084141.4|Zfp820|ENSMUSG00000069743.4|zinc finger protein 820
mm10_v2_chr7_-_141435327_141435397	0.076198	Hoxa11_Hoxc12	ENSMUST00000138865.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm10_v2_chr8_-_69373914_69373914	0.0718766	Hoxa11_Hoxc12	ENSMUST00000095282.1|Gm10311|ENSMUSG00000071083.1|predicted gene 10311
mm10_v2_chr14_+_80000292_80000309	0.071737	Hoxa11_Hoxc12	ENSMUST00000088735.3|Olfm4|ENSMUSG00000022026.6|olfactomedin 4
mm10_v2_chr10_+_128015157_128015175	0.0673869	Hoxa11_Hoxc12	ENSMUST00000178041.1|Prim1|ENSMUSG00000025395.8|DNA primase, p49 subunit 	ENSMUST00000026461.7|Prim1|ENSMUSG00000025395.8|DNA primase, p49 subunit
mm10_v2_chr3_+_100489508_100489664	0.0669261	Hoxa11_Hoxc12	ENSMUST00000122898.1|Gm12474|ENSMUSG00000053957.5|predicted gene 12474
mm10_v2_chr6_+_149141638_149141663	0.0666345	Hoxa11_Hoxc12	ENSMUST00000166416.1|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20 	ENSMUST00000111551.1|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20
mm10_v2_chr13_+_109685994_109686156	0.0651085	Hoxa11_Hoxc12	ENSMUST00000074103.5|Pde4d|ENSMUSG00000021699.11|phosphodiesterase 4D, cAMP specific
mm10_v2_chr15_-_100424092_100424173	0.0644186	Hoxa11_Hoxc12	ENSMUST00000154676.1|Slc11a2|ENSMUSG00000023030.10|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
mm10_v2_chr14_+_27622433_27622543	0.0639198	Hoxa11_Hoxc12	ENSMUST00000090302.5|Erc2|ENSMUSG00000040640.9|ELKS/RAB6-interacting/CAST family member 2
mm10_v2_chr18_+_69346143_69346203	0.0634332	Hoxa11_Hoxc12	ENSMUST00000114980.1|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr9_-_55919605_55919605	0.0629492	Hoxa11_Hoxc12	ENSMUST00000037408.8|Scaper|ENSMUSG00000034007.9|S phase cyclin A-associated protein in the ER
mm10_v2_chr19_+_58943413_58943431	0.0617244	Hoxa11_Hoxc12	ENSMUST00000054280.6|Eno4|ENSMUSG00000048029.7|enolase 4
mm10_v2_chr17_+_75465538_75465568	0.0595459	Hoxa11_Hoxc12	ENSMUST00000095204.4|Rasgrp3|ENSMUSG00000071042.5|RAS, guanyl releasing protein 3
mm10_v2_chr16_+_87553313_87553342	0.0576779	Hoxa11_Hoxc12	ENSMUST00000026700.7|Map3k7cl|ENSMUSG00000025610.7|Map3k7 C-terminal like
mm10_v2_chr11_+_55213783_55213814	0.0575408	Hoxa11_Hoxc12	ENSMUST00000108867.1|Slc36a1|ENSMUSG00000020261.9|solute carrier family 36 (proton/amino acid symporter), member 1
mm10_v2_chr6_-_118455475_118455528	0.05679	Hoxa11_Hoxc12	ENSMUST00000161519.1|Zfp248|ENSMUSG00000030145.8|zinc finger protein 248 	ENSMUST00000069292.7|Zfp248|ENSMUSG00000030145.8|zinc finger protein 248
mm10_v2_chr13_+_16014457_16014475	0.0548613	Hoxa11_Hoxc12	ENSMUST00000164993.1|Inhba|ENSMUSG00000041324.7|inhibin beta-A
mm10_v2_chr12_-_54986363_54986529	0.05455	Hoxa11_Hoxc12	ENSMUST00000173433.1|Baz1a|ENSMUSG00000035021.7|bromodomain adjacent to zinc finger domain 1A 	ENSMUST00000173803.1|Gm20403|ENSMUSG00000092233.1|predicted gene 20403
mm10_v2_chr3_+_69721985_69722071	0.0543627	Hoxa11_Hoxc12	ENSMUST00000029358.8|Nmd3|ENSMUSG00000027787.8|NMD3 homolog (S. cerevisiae)
mm10_v2_chr13_-_98262946_98263020	0.0538476	Hoxa11_Hoxc12	ENSMUST00000040972.2|Utp15|ENSMUSG00000041747.2|UTP15, U3 small nucleolar ribonucleoprotein, homolog (yeast)
mm10_v2_chr16_-_74411776_74411792	0.0518288	Hoxa11_Hoxc12	ENSMUST00000116586.2|Robo2|ENSMUSG00000052516.11|roundabout homolog 2 (Drosophila)
mm10_v2_chr7_-_141434532_141434605	0.0514053	Hoxa11_Hoxc12	ENSMUST00000133021.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000106007.3|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000150026.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000133206.2|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm10_v2_chr8_+_40307458_40307458	0.0505212	Hoxa11_Hoxc12	ENSMUST00000068999.7|Micu3|ENSMUSG00000039478.9|mitochondrial calcium uptake family, member 3
mm10_v2_chr14_-_34503323_34503345	0.0494581	Hoxa11_Hoxc12	ENSMUST00000171343.1|Bmpr1a|ENSMUSG00000021796.8|bone morphogenetic protein receptor, type 1A
mm10_v2_chr8_+_124023394_124023394	0.0488388	Hoxa11_Hoxc12	ENSMUST00000034457.8|Urb2|ENSMUSG00000031976.8|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
mm10_v2_chr17_+_8182247_8182247	0.0485289	Hoxa11_Hoxc12	ENSMUST00000161898.1|Fgfr1op|ENSMUSG00000069135.5|Fgfr1 oncogene partner
mm10_v2_chr8_+_31150307_31150346	0.0474321	Hoxa11_Hoxc12	ENSMUST00000098842.2|Tti2|ENSMUSG00000031577.9|TELO2 interacting protein 2
mm10_v2_chr6_+_108213086_108213123	0.0460784	Hoxa11_Hoxc12	ENSMUST00000032192.6|Itpr1|ENSMUSG00000030102.8|inositol 1,4,5-trisphosphate receptor 1
mm10_v2_chr13_+_98263105_98263177	0.0451397	Hoxa11_Hoxc12	ENSMUST00000150916.1|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2
mm10_v2_chr11_+_105994635_105994678	0.0447121	Hoxa11_Hoxc12	ENSMUST00000183675.1|ACE3|ENSMUSG00000098427.1|angiotensin I converting enzyme 3 precursor  	ENSMUST00000184871.1|Ace3|ENSMUSG00000098551.1|angiotensin I converting enzyme (peptidyl-dipeptidase A) 3
mm10_v2_chr7_-_73537621_73537766	0.0440638	Hoxa11_Hoxc12	ENSMUST00000172704.1|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr11_-_43426192_43426258	0.0438335	Hoxa11_Hoxc12	ENSMUST00000101340.4|Pttg1|ENSMUSG00000020415.10|pituitary tumor-transforming gene 1 	ENSMUST00000118368.1|Pttg1|ENSMUSG00000020415.10|pituitary tumor-transforming gene 1 	ENSMUST00000020685.9|Pttg1|ENSMUSG00000020415.10|pituitary tumor-transforming gene 1 	ENSMUST00000020687.8|Pttg1|ENSMUSG00000020415.10|pituitary tumor-transforming gene 1
mm10_v2_chr4_+_136143497_136143497	0.0437762	Hoxa11_Hoxc12	ENSMUST00000008016.2|Id3|ENSMUSG00000007872.3|inhibitor of DNA binding 3
mm10_v2_chr2_-_73485733_73485769	0.0435454	Hoxa11_Hoxc12	ENSMUST00000102680.1|Wipf1|ENSMUSG00000075284.4|WAS/WASL interacting protein family, member 1
mm10_v2_chr9_+_106281061_106281061	0.0434608	Hoxa11_Hoxc12	ENSMUST00000072206.6|Poc1a|ENSMUSG00000023345.9|POC1 centriolar protein homolog A (Chlamydomonas)
mm10_v2_chr2_+_5845243_5845311	0.0434234	Hoxa11_Hoxc12	ENSMUST00000127116.1|Nudt5|ENSMUSG00000025817.6|nudix (nucleoside diphosphate linked moiety X)-type motif 5
mm10_v2_chr2_-_130629994_130630038	0.0422457	Hoxa11_Hoxc12	ENSMUST00000110262.1|Fastkd5|ENSMUSG00000079043.2|FAST kinase domains 5 	ENSMUST00000028761.4|Ubox5|ENSMUSG00000027300.9|U box domain containing 5
mm10_v2_chr11_+_62458414_62458469	0.040537	Hoxa11_Hoxc12	ENSMUST00000014389.5|Pigl|ENSMUSG00000014245.8|phosphatidylinositol glycan anchor biosynthesis, class L
mm10_v2_chr3_+_126597299_126597413	0.0396277	Hoxa11_Hoxc12	ENSMUST00000106400.2|Camk2d|ENSMUSG00000053819.10|calcium/calmodulin-dependent protein kinase II, delta 	ENSMUST00000106401.1|Camk2d|ENSMUSG00000053819.10|calcium/calmodulin-dependent protein kinase II, delta
mm10_v2_chr7_+_126649297_126649344	0.0389456	Hoxa11_Hoxc12	ENSMUST00000032956.8|Ccdc101|ENSMUSG00000030714.8|coiled-coil domain containing 101
mm10_v2_chr1_-_93101825_93101849	0.0358194	Hoxa11_Hoxc12	ENSMUST00000112958.2|Kif1a|ENSMUSG00000014602.9|kinesin family member 1A
mm10_v2_chr1_-_128328311_128328326	0.0336273	Hoxa11_Hoxc12	ENSMUST00000073490.6|Lct|ENSMUSG00000026354.8|lactase
mm10_v2_chr5_+_150018675_150018799	0.0321317	Hoxa11_Hoxc12	ENSMUST00000065745.3|Rxfp2|ENSMUSG00000053368.7|relaxin/insulin-like family peptide receptor 2 	ENSMUST00000110496.1|Rxfp2|ENSMUSG00000053368.7|relaxin/insulin-like family peptide receptor 2
mm10_v2_chr17_+_8283762_8283852	0.032044	Hoxa11_Hoxc12	ENSMUST00000155364.1|Mpc1|ENSMUSG00000023861.11|mitochondrial pyruvate carrier 1 	ENSMUST00000046754.8|Mpc1|ENSMUSG00000023861.11|mitochondrial pyruvate carrier 1 	ENSMUST00000124023.1|Mpc1|ENSMUSG00000023861.11|mitochondrial pyruvate carrier 1
mm10_v2_chr9_+_3404058_3404098	0.0319425	Hoxa11_Hoxc12	ENSMUST00000027027.5|Cwf19l2|ENSMUSG00000025898.5|CWF19-like 2, cell cycle control (S. pombe)
mm10_v2_chrX_+_41401128_41401200	0.0306867	Hoxa11_Hoxc12	ENSMUST00000115103.2|Gria3|ENSMUSG00000001986.10|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm10_v2_chr3_+_32436376_32436376	0.0288023	Hoxa11_Hoxc12	ENSMUST00000108242.1|Pik3ca|ENSMUSG00000027665.7|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm10_v2_chr2_-_120970706_120970761	0.028739	Hoxa11_Hoxc12	ENSMUST00000028728.5|Ubr1|ENSMUSG00000027272.5|ubiquitin protein ligase E3 component n-recognin 1
mm10_v2_chr5_-_20951769_20951824	0.0278289	Hoxa11_Hoxc12	ENSMUST00000036489.5|Rsbn1l|ENSMUSG00000039968.5|round spermatid basic protein 1-like
mm10_v2_chr18_+_37333853_37333946	0.0277418	Hoxa11_Hoxc12	ENSMUST00000061717.2|Pcdhb6|ENSMUSG00000051678.3|protocadherin beta 6
mm10_v2_chr11_-_115627948_115628122	0.0272987	Hoxa11_Hoxc12	ENSMUST00000154623.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 	ENSMUST00000106503.3|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 	ENSMUST00000141614.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
mm10_v2_chrX_+_20364481_20364616	0.0270236	Hoxa11_Hoxc12	ENSMUST00000033372.6|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human) 	ENSMUST00000115391.1|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human) 	ENSMUST00000115387.1|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human)
mm10_v2_chr1_+_88070765_88070800	0.0267528	Hoxa11_Hoxc12	ENSMUST00000073772.4|Ugt1a9|ENSMUSG00000090175.1|UDP glucuronosyltransferase 1 family, polypeptide A9
mm10_v2_chr13_-_23430826_23431022	0.0267446	Hoxa11_Hoxc12	ENSMUST00000153753.1|C230035I16Rik|ENSMUSG00000085024.1|RIKEN cDNA C230035I16 gene 	ENSMUST00000141543.1|C230035I16Rik|ENSMUSG00000085024.1|RIKEN cDNA C230035I16 gene
mm10_v2_chr6_+_40325471_40325501	0.0266342	Hoxa11_Hoxc12	ENSMUST00000031977.8|Agk|ENSMUSG00000029916.8|acylglycerol kinase
mm10_v2_chr3_-_88458876_88459043	0.0260885	Hoxa11_Hoxc12	ENSMUST00000147200.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 	ENSMUST00000169222.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm10_v2_chr4_-_135986917_135987018	0.0260126	Hoxa11_Hoxc12	ENSMUST00000123404.1|Pithd1|ENSMUSG00000028669.9|PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1
mm10_v2_chr4_-_129378116_129378116	0.0256344	Hoxa11_Hoxc12	ENSMUST00000030610.2|Zbtb8a|ENSMUSG00000028807.2|zinc finger and BTB domain containing 8a
mm10_v2_chr16_-_56024628_56024668	0.0247573	Hoxa11_Hoxc12	ENSMUST00000119981.1|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein 	ENSMUST00000096021.3|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein
mm10_v2_chr13_-_54749849_54749893	0.0244362	Hoxa11_Hoxc12	ENSMUST00000135343.1|Gprin1|ENSMUSG00000069227.4|G protein-regulated inducer of neurite outgrowth 1
mm10_v2_chr3_-_88459047_88459101	0.0243172	Hoxa11_Hoxc12	ENSMUST00000165898.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 	ENSMUST00000127436.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm10_v2_chr9_-_14782964_14782964	0.023735	Hoxa11_Hoxc12	ENSMUST00000034406.3|Ankrd49|ENSMUSG00000031931.3|ankyrin repeat domain 49
mm10_v2_chr17_-_24455265_24455345	0.0234484	Hoxa11_Hoxc12	ENSMUST00000056032.7|E4f1|ENSMUSG00000024137.8|E4F transcription factor 1
mm10_v2_chr11_-_23895208_23895280	0.0234017	Hoxa11_Hoxc12	ENSMUST00000102863.2|Papolg|ENSMUSG00000020273.7|poly(A) polymerase gamma 	ENSMUST00000020513.3|Papolg|ENSMUSG00000020273.7|poly(A) polymerase gamma
mm10_v2_chr2_+_166805506_166805605	0.0231474	Hoxa11_Hoxc12	ENSMUST00000099078.3|Arfgef2|ENSMUSG00000074582.4|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
mm10_v2_chr3_+_145576196_145576266	0.0222733	Hoxa11_Hoxc12	ENSMUST00000098534.4|Znhit6|ENSMUSG00000074182.4|zinc finger, HIT type 6
mm10_v2_chr16_-_16600533_16600576	0.0220252	Hoxa11_Hoxc12	ENSMUST00000159542.1|Fgd4|ENSMUSG00000022788.10|FYVE, RhoGEF and PH domain containing 4
mm10_v2_chr1_+_72307413_72307450	0.0215635	Hoxa11_Hoxc12	ENSMUST00000027379.8|Xrcc5|ENSMUSG00000026187.8|X-ray repair complementing defective repair in Chinese hamster cells 5
mm10_v2_chr4_+_130913264_130913358	0.0207506	Hoxa11_Hoxc12	ENSMUST00000156225.1|Laptm5|ENSMUSG00000028581.11|lysosomal-associated protein transmembrane 5 	ENSMUST00000156742.1|Laptm5|ENSMUSG00000028581.11|lysosomal-associated protein transmembrane 5
mm10_v2_chr5_-_116024475_116024508	0.01995	Hoxa11_Hoxc12	ENSMUST00000111999.1|Prkab1|ENSMUSG00000029513.8|protein kinase, AMP-activated, beta 1 non-catalytic subunit
mm10_v2_chr6_-_29216277_29216292	0.0198767	Hoxa11_Hoxc12	ENSMUST00000162215.1|Impdh1|ENSMUSG00000003500.7|inosine 5'-phosphate dehydrogenase 1
mm10_v2_chr15_-_77970750_77970824	0.019329	Hoxa11_Hoxc12	ENSMUST00000100484.4|Eif3d|ENSMUSG00000016554.8|eukaryotic translation initiation factor 3, subunit D
mm10_v2_chr7_+_100372224_100372383	0.01917	Hoxa11_Hoxc12	ENSMUST00000051777.8|C2cd3|ENSMUSG00000047248.13|C2 calcium-dependent domain containing 3 	ENSMUST00000098259.4|C2cd3|ENSMUSG00000047248.13|C2 calcium-dependent domain containing 3
mm10_v2_chr11_-_102407315_102407448	0.019036	Hoxa11_Hoxc12	ENSMUST00000149777.1|Slc25a39|ENSMUSG00000018677.3|solute carrier family 25, member 39 	ENSMUST00000154001.1|Slc25a39|ENSMUSG00000018677.3|solute carrier family 25, member 39
mm10_v2_chr7_-_119895446_119895543	0.0188817	Hoxa11_Hoxc12	ENSMUST00000098080.2|Dcun1d3|ENSMUSG00000048787.6|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
mm10_v2_chr4_+_107889813_107889908	0.0186065	Hoxa11_Hoxc12	ENSMUST00000135454.1|0610037L13Rik|ENSMUSG00000028608.9|RIKEN cDNA 0610037L13 gene 	ENSMUST00000106726.3|0610037L13Rik|ENSMUSG00000028608.9|RIKEN cDNA 0610037L13 gene 	ENSMUST00000106727.3|0610037L13Rik|ENSMUSG00000028608.9|RIKEN cDNA 0610037L13 gene 	ENSMUST00000119394.1|0610037L13Rik|ENSMUSG00000028608.9|RIKEN cDNA 0610037L13 gene 	ENSMUST00000120473.1|0610037L13Rik|ENSMUSG00000028608.9|RIKEN cDNA 0610037L13 gene 	ENSMUST00000125107.1|0610037L13Rik|ENSMUSG00000028608.9|RIKEN cDNA 0610037L13 gene 	ENSMUST00000128474.1|0610037L13Rik|ENSMUSG00000028608.9|RIKEN cDNA 0610037L13 gene
mm10_v2_chr17_+_6270475_6270475	0.0182011	Hoxa11_Hoxc12	ENSMUST00000088940.4|Tmem181a|ENSMUSG00000038141.8|transmembrane protein 181A
mm10_v2_chr3_+_88621102_88621130	0.0181235	Hoxa11_Hoxc12	ENSMUST00000029694.7|Arhgef2|ENSMUSG00000028059.8|rho/rac guanine nucleotide exchange factor (GEF) 2 	ENSMUST00000176804.1|Arhgef2|ENSMUSG00000028059.8|rho/rac guanine nucleotide exchange factor (GEF) 2
mm10_v2_chr19_-_7483212_7483229	0.0177495	Hoxa11_Hoxc12	ENSMUST00000088169.5|Rtn3|ENSMUSG00000024758.8|reticulon 3
mm10_v2_chr5_+_3543812_3543853	0.017578	Hoxa11_Hoxc12	ENSMUST00000115527.3|Fam133b|ENSMUSG00000058503.7|family with sequence similarity 133, member B
mm10_v2_chr1_-_189922338_189922363	0.017546	Hoxa11_Hoxc12	ENSMUST00000027897.7|Smyd2|ENSMUSG00000026603.7|SET and MYND domain containing 2
mm10_v2_chr7_-_46795881_46796085	0.0174793	Hoxa11_Hoxc12	ENSMUST00000107653.1|Hps5|ENSMUSG00000014418.9|Hermansky-Pudlak syndrome 5 homolog (human) 	ENSMUST00000107654.1|Hps5|ENSMUSG00000014418.9|Hermansky-Pudlak syndrome 5 homolog (human) 	ENSMUST00000014562.7|Hps5|ENSMUSG00000014418.9|Hermansky-Pudlak syndrome 5 homolog (human) 	ENSMUST00000152759.1|Hps5|ENSMUSG00000014418.9|Hermansky-Pudlak syndrome 5 homolog (human)
mm10_v2_chr6_-_142473075_142473115	0.0172841	Hoxa11_Hoxc12	ENSMUST00000032371.7|Gys2|ENSMUSG00000030244.7|glycogen synthase 2
mm10_v2_chr9_-_44407526_44407551	0.0170763	Hoxa11_Hoxc12	ENSMUST00000034623.6|Trappc4|ENSMUSG00000032112.9|trafficking protein particle complex 4
mm10_v2_chr13_+_47193942_47194010	0.0167067	Hoxa11_Hoxc12	ENSMUST00000110111.2|Rnf144b|ENSMUSG00000038068.8|ring finger protein 144B
mm10_v2_chr11_-_115628260_115628298	0.0166796	Hoxa11_Hoxc12	ENSMUST00000178003.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
mm10_v2_chr16_+_23224724_23224804	0.0162768	Hoxa11_Hoxc12	ENSMUST00000023601.7|St6gal1|ENSMUSG00000022885.9|beta galactoside alpha 2,6 sialyltransferase 1
mm10_v2_chr5_+_32611171_32611245	0.0162739	Hoxa11_Hoxc12	ENSMUST00000072311.6|Yes1|ENSMUSG00000014932.9|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1 	ENSMUST00000168707.2|Yes1|ENSMUSG00000014932.9|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1
mm10_v2_chr11_-_102407455_102407544	0.0160642	Hoxa11_Hoxc12	ENSMUST00000107098.1|Slc25a39|ENSMUSG00000018677.3|solute carrier family 25, member 39 	ENSMUST00000018821.2|Slc25a39|ENSMUSG00000018677.3|solute carrier family 25, member 39
mm10_v2_chr2_+_23207470_23207497	0.0160348	Hoxa11_Hoxc12	ENSMUST00000028113.3|4931423N10Rik|ENSMUSG00000026774.5|RIKEN cDNA 4931423N10 gene 	ENSMUST00000114505.1|4931423N10Rik|ENSMUSG00000026774.5|RIKEN cDNA 4931423N10 gene
mm10_v2_chr3_+_126597415_126597440	0.0153075	Hoxa11_Hoxc12	ENSMUST00000066452.7|Camk2d|ENSMUSG00000053819.10|calcium/calmodulin-dependent protein kinase II, delta 	ENSMUST00000171289.1|Camk2d|ENSMUSG00000053819.10|calcium/calmodulin-dependent protein kinase II, delta 	ENSMUST00000106399.1|Camk2d|ENSMUSG00000053819.10|calcium/calmodulin-dependent protein kinase II, delta
mm10_v2_chr13_-_19732929_19732954	0.0147964	Hoxa11_Hoxc12	ENSMUST00000151029.1|A530099J19Rik|ENSMUSG00000047462.8|RIKEN cDNA A530099J19 gene
mm10_v2_chr11_+_3963970_3963983	0.0147047	Hoxa11_Hoxc12	ENSMUST00000020705.4|Pes1|ENSMUSG00000020430.6|pescadillo homolog 1, containing BRCT domain (zebrafish) 	ENSMUST00000109985.1|Pes1|ENSMUSG00000020430.6|pescadillo homolog 1, containing BRCT domain (zebrafish)
mm10_v2_chr5_+_66968961_66969132	0.0144217	Hoxa11_Hoxc12	ENSMUST00000132991.1|Limch1|ENSMUSG00000037736.12|LIM and calponin homology domains 1
mm10_v2_chr6_+_149141513_149141619	0.014016	Hoxa11_Hoxc12	ENSMUST00000047531.9|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20 	ENSMUST00000179873.1|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20 	ENSMUST00000111548.1|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20 	ENSMUST00000111547.1|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20 	ENSMUST00000134306.1|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20
mm10_v2_chr3_-_100489324_100489354	0.0134584	Hoxa11_Hoxc12	ENSMUST00000061455.8|Fam46c|ENSMUSG00000044468.8|family with sequence similarity 46, member C
mm10_v2_chr6_+_42286676_42286687	0.0132296	Hoxa11_Hoxc12	ENSMUST00000031894.6|Clcn1|ENSMUSG00000029862.9|chloride channel 1
mm10_v2_chr19_-_40994133_40994148	0.0121578	Hoxa11_Hoxc12	ENSMUST00000117695.1|Blnk|ENSMUSG00000061132.7|B cell linker
mm10_v2_chr13_+_98263242_98263302	0.0118175	Hoxa11_Hoxc12	ENSMUST00000022164.8|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2 	ENSMUST00000150352.1|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2
mm10_v2_chr7_+_4460687_4460730	0.0116948	Hoxa11_Hoxc12	ENSMUST00000167298.1|Eps8l1|ENSMUSG00000006154.7|EPS8-like 1 	ENSMUST00000171445.1|Eps8l1|ENSMUSG00000006154.7|EPS8-like 1
mm10_v2_chr11_-_95309557_95309602	0.0116829	Hoxa11_Hoxc12	ENSMUST00000092766.5|Kat7|ENSMUSG00000038909.10|K(lysine) acetyltransferase 7 	ENSMUST00000072621.5|Kat7|ENSMUSG00000038909.10|K(lysine) acetyltransferase 7
mm10_v2_chr6_-_87809757_87809787	0.0116103	Hoxa11_Hoxc12	ENSMUST00000032134.7|Rab43|ENSMUSG00000030055.10|RAB43, member RAS oncogene family
mm10_v2_chr13_-_35027077_35027099	0.0112919	Hoxa11_Hoxc12	ENSMUST00000170538.1|Eci2|ENSMUSG00000021417.8|enoyl-Coenzyme A delta isomerase 2 	ENSMUST00000163280.1|Eci2|ENSMUSG00000021417.8|enoyl-Coenzyme A delta isomerase 2
mm10_v2_chr17_-_46674255_46674274	0.0111366	Hoxa11_Hoxc12	ENSMUST00000024766.6|Rrp36|ENSMUSG00000023971.8|ribosomal RNA processing 36 homolog (S. cerevisiae)
mm10_v2_chr3_-_117360876_117360876	0.0110971	Hoxa11_Hoxc12	ENSMUST00000061071.8|D3Bwg0562e|ENSMUSG00000044667.8|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed
mm10_v2_chrX_+_41401304_41401427	0.0106123	Hoxa11_Hoxc12	ENSMUST00000076349.5|Gria3|ENSMUSG00000001986.10|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm10_v2_chr14_-_104522615_104522707	0.0102939	Hoxa11_Hoxc12	ENSMUST00000022716.2|Rnf219|ENSMUSG00000022120.3|ring finger protein 219
mm10_v2_chr10_+_80622677_80622780	0.00962922	Hoxa11_Hoxc12	ENSMUST00000079773.6|Csnk1g2|ENSMUSG00000003345.9|casein kinase 1, gamma 2
mm10_v2_chr8_+_33653238_33653238	0.00908986	Hoxa11_Hoxc12	ENSMUST00000033992.8|Gsr|ENSMUSG00000031584.10|glutathione reductase
mm10_v2_chr14_+_115042752_115042879	0.00903853	Hoxa11_Hoxc12	ENSMUST00000134140.2|Mir17hg|ENSMUSG00000089726.2|Mir17 host gene 1 (non-protein coding)
mm10_v2_chr6_-_52218686_52218716	0.00903816	Hoxa11_Hoxc12	ENSMUST00000134367.2|Hoxa7|ENSMUSG00000038236.6|homeobox A7
mm10_v2_chr6_+_42286709_42286856	0.00871448	Hoxa11_Hoxc12	ENSMUST00000163936.1|Clcn1|ENSMUSG00000029862.9|chloride channel 1
mm10_v2_chr12_+_78226627_78226655	0.00868725	Hoxa11_Hoxc12	ENSMUST00000110388.2|Gphn|ENSMUSG00000047454.5|gephyrin 	ENSMUST00000052472.4|Gphn|ENSMUSG00000047454.5|gephyrin
mm10_v2_chr8_+_105225145_105225193	0.0086802	Hoxa11_Hoxc12	ENSMUST00000034361.3|D230025D16Rik|ENSMUSG00000031889.3|RIKEN cDNA D230025D16 gene
mm10_v2_chr14_+_49172202_49172254	0.00865036	Hoxa11_Hoxc12	ENSMUST00000153488.1|Naa30|ENSMUSG00000036282.8|N(alpha)-acetyltransferase 30, NatC catalytic subunit
mm10_v2_chr7_-_41448641_41448641	0.00856128	Hoxa11_Hoxc12	ENSMUST00000165029.1|Vmn2r57|ENSMUSG00000066537.4|vomeronasal 2, receptor 57
mm10_v2_chr1_+_88087802_88087848	0.00826772	Hoxa11_Hoxc12	ENSMUST00000113139.1|Ugt1a8|ENSMUSG00000089675.1|UDP glucuronosyltransferase 1 family, polypeptide A8
mm10_v2_chr9_+_44407629_44407714	0.00821041	Hoxa11_Hoxc12	ENSMUST00000080300.7|Rps25|ENSMUSG00000009927.8|ribosomal protein S25
mm10_v2_chr5_-_73256555_73256636	0.00818583	Hoxa11_Hoxc12	ENSMUST00000171179.1|Fryl|ENSMUSG00000090491.1|furry homolog-like (Drosophila) 	ENSMUST00000101127.5|Fryl|ENSMUSG00000070733.7|furry homolog-like (Drosophila)
mm10_v2_chr11_-_102697710_102697782	0.00792991	Hoxa11_Hoxc12	ENSMUST00000164506.2|Ccdc43|ENSMUSG00000020925.10|coiled-coil domain containing 43 	ENSMUST00000092569.6|Ccdc43|ENSMUSG00000020925.10|coiled-coil domain containing 43
mm10_v2_chr3_-_142881942_142882017	0.00779922	Hoxa11_Hoxc12	ENSMUST00000043812.8|Pkn2|ENSMUSG00000004591.10|protein kinase N2
mm10_v2_chr10_-_19011948_19011973	0.00724296	Hoxa11_Hoxc12	ENSMUST00000105527.1|Tnfaip3|ENSMUSG00000019850.5|tumor necrosis factor, alpha-induced protein 3
mm10_v2_chr7_-_142661858_142661880	0.00717333	Hoxa11_Hoxc12	ENSMUST00000145896.2|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2
mm10_v2_chr16_-_23225334_23225368	0.00709511	Hoxa11_Hoxc12	ENSMUST00000055369.4|BC106179|ENSMUSG00000045231.4|cDNA sequence BC106179
mm10_v2_chr18_-_46280820_46280850	0.00666838	Hoxa11_Hoxc12	ENSMUST00000025354.3|Pggt1b|ENSMUSG00000024477.3|protein geranylgeranyltransferase type I, beta subunit
mm10_v2_chr11_-_115628125_115628164	0.00635615	Hoxa11_Hoxc12	ENSMUST00000155709.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 	ENSMUST00000021089.4|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
mm10_v2_chr2_-_165287755_165287845	0.00556259	Hoxa11_Hoxc12	ENSMUST00000109298.1|Slc35c2|ENSMUSG00000017664.10|solute carrier family 35, member C2 	ENSMUST00000109299.1|Slc35c2|ENSMUSG00000017664.10|solute carrier family 35, member C2 	ENSMUST00000130393.1|Slc35c2|ENSMUSG00000017664.10|solute carrier family 35, member C2 	ENSMUST00000017808.7|Slc35c2|ENSMUSG00000017664.10|solute carrier family 35, member C2 	ENSMUST00000131409.1|Slc35c2|ENSMUSG00000017664.10|solute carrier family 35, member C2 	ENSMUST00000156134.1|Slc35c2|ENSMUSG00000017664.10|solute carrier family 35, member C2 	ENSMUST00000133961.1|Slc35c2|ENSMUSG00000017664.10|solute carrier family 35, member C2
mm10_v2_chr19_-_46338632_46338670	0.00539947	Hoxa11_Hoxc12	ENSMUST00000051234.8|Cuedc2|ENSMUSG00000036748.9|CUE domain containing 2 	ENSMUST00000167861.1|Cuedc2|ENSMUSG00000036748.9|CUE domain containing 2
mm10_v2_chr13_+_98263187_98263221	0.00511583	Hoxa11_Hoxc12	ENSMUST00000091356.3|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2 	ENSMUST00000123924.1|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2
mm10_v2_chr9_+_37613806_37613858	0.00468203	Hoxa11_Hoxc12	ENSMUST00000002007.3|Siae|ENSMUSG00000001942.7|sialic acid acetylesterase
mm10_v2_chr2_-_104712122_104712180	0.00445108	Hoxa11_Hoxc12	ENSMUST00000111118.1|Tcp11l1|ENSMUSG00000027175.4|t-complex 11 like 1 	ENSMUST00000028597.3|Tcp11l1|ENSMUSG00000027175.4|t-complex 11 like 1
mm10_v2_chr1_+_182409162_182409184	0.00389172	Hoxa11_Hoxc12	ENSMUST00000117245.1|Trp53bp2|ENSMUSG00000026510.9|transformation related protein 53 binding protein 2
mm10_v2_chr8_-_69625503_69625559	0.0035992	Hoxa11_Hoxc12	ENSMUST00000121886.1|Zfp868|ENSMUSG00000060427.9|zinc finger protein 868
mm10_v2_chr2_+_23068168_23068241	0.00334941	Hoxa11_Hoxc12	ENSMUST00000028121.7|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5 	ENSMUST00000114523.2|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5 	ENSMUST00000144088.1|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5
mm10_v2_chr16_-_45408955_45409053	0.00329418	Hoxa11_Hoxc12	ENSMUST00000163230.1|Cd200|ENSMUSG00000022661.8|CD200 antigen
mm10_v2_chr16_-_57231434_57231509	0.00318434	Hoxa11_Hoxc12	ENSMUST00000023431.6|Tbc1d23|ENSMUSG00000022749.6|TBC1 domain family, member 23
mm10_v2_chr11_+_115403734_115403777	0.00317585	Hoxa11_Hoxc12	ENSMUST00000153983.1|Ict1|ENSMUSG00000018858.9|immature colon carcinoma transcript 1 	ENSMUST00000106539.3|Ict1|ENSMUSG00000018858.9|immature colon carcinoma transcript 1 	ENSMUST00000103036.4|Ict1|ENSMUSG00000018858.9|immature colon carcinoma transcript 1
mm10_v2_chr14_+_54883377_54883507	0.00267605	Hoxa11_Hoxc12	ENSMUST00000022806.3|Bcl2l2|ENSMUSG00000089682.3|BCL2-like 2 	ENSMUST00000134077.1|Gm20521|ENSMUSG00000092232.1|predicted gene 20521 	ENSMUST00000172844.1|Bcl2l2|ENSMUSG00000089682.3|BCL2-like 2 	ENSMUST00000133397.2|Bcl2l2|ENSMUSG00000089682.3|BCL2-like 2
mm10_v2_chrX_+_73064787_73064787	0.00265327	Hoxa11_Hoxc12	ENSMUST00000060418.6|Pnma3|ENSMUSG00000046287.6|paraneoplastic antigen MA3
mm10_v2_chr12_+_59066908_59066931	0.00199038	Hoxa11_Hoxc12	ENSMUST00000021381.4|Pnn|ENSMUSG00000020994.4|pinin
mm10_v2_chr6_+_40471352_40471526	0.00167184	Hoxa11_Hoxc12	ENSMUST00000114779.2|Ssbp1|ENSMUSG00000029911.8|single-stranded DNA binding protein 1 	ENSMUST00000031971.6|Ssbp1|ENSMUSG00000029911.8|single-stranded DNA binding protein 1 	ENSMUST00000121360.1|Ssbp1|ENSMUSG00000029911.8|single-stranded DNA binding protein 1 	ENSMUST00000117411.1|Ssbp1|ENSMUSG00000029911.8|single-stranded DNA binding protein 1 	ENSMUST00000117830.1|Ssbp1|ENSMUSG00000029911.8|single-stranded DNA binding protein 1
mm10_v2_chr7_-_30612731_30612744	0.001624	Hoxa11_Hoxc12	ENSMUST00000006476.4|Upk1a|ENSMUSG00000006313.4|uroplakin 1A
mm10_v2_chr12_-_23780265_23780265	0.000610671	Hoxa11_Hoxc12	ENSMUST00000072014.4|Gm10330|ENSMUSG00000071362.2|predicted gene 10330
mm10_v2_chr3_-_144849301_144849357	0.000480209	Hoxa11_Hoxc12	ENSMUST00000159989.1|Clca4|ENSMUSG00000037033.9|chloride channel calcium activated 4
