mm10_v2_chr3_+_55782500_55782521	0.122132	Hoxa3	ENSMUST00000075422.4|Mab21l1|ENSMUSG00000056947.4|mab-21-like 1 (C. elegans)
mm10_v2_chr16_-_42340595_42340651	0.119151	Hoxa3	ENSMUST00000102817.4|Gap43|ENSMUSG00000047261.9|growth associated protein 43
mm10_v2_chr14_+_27000362_27000507	0.0907894	Hoxa3	ENSMUST00000035433.8|Hesx1|ENSMUSG00000040726.8|homeobox gene expressed in ES cells
mm10_v2_chr19_-_7966000_7966037	0.0850754	Hoxa3	ENSMUST00000182102.1|Slc22a27|ENSMUSG00000067656.7|solute carrier family 22, member 27 	ENSMUST00000075619.4|Slc22a27|ENSMUSG00000067656.7|solute carrier family 22, member 27
mm10_v2_chr5_+_90561102_90561209	0.070178	Hoxa3	ENSMUST00000094615.4|5830473C10Rik|ENSMUSG00000070690.4|RIKEN cDNA 5830473C10 gene
mm10_v2_chr17_+_17402672_17402771	0.0697945	Hoxa3	ENSMUST00000115576.2|Lix1|ENSMUSG00000047786.12|limb expression 1 homolog (chicken)
mm10_v2_chr10_+_23894688_23894688	0.0592799	Hoxa3	ENSMUST00000041416.7|Vnn1|ENSMUSG00000037440.7|vanin 1
mm10_v2_chr9_+_119063429_119063467	0.0544425	Hoxa3	ENSMUST00000141185.1|Vill|ENSMUSG00000038775.8|villin-like 	ENSMUST00000126251.1|Vill|ENSMUSG00000038775.8|villin-like 	ENSMUST00000136561.1|Vill|ENSMUSG00000038775.8|villin-like
mm10_v2_chr7_-_45103747_45103822	0.0510835	Hoxa3	ENSMUST00000003512.7|Fcgrt|ENSMUSG00000003420.7|Fc receptor, IgG, alpha chain transporter
mm10_v2_chr19_-_5560570_5560582	0.0456649	Hoxa3	ENSMUST00000025861.1|Ovol1|ENSMUSG00000024922.1|OVO homolog-like 1 (Drosophila)
mm10_v2_chr17_-_70853482_70853546	0.045146	Hoxa3	ENSMUST00000118283.1|Tgif1|ENSMUSG00000047407.11|TGFB-induced factor homeobox 1
mm10_v2_chr5_+_138187485_138187521	0.0432501	Hoxa3	ENSMUST00000110934.2|Cnpy4|ENSMUSG00000036968.9|canopy 4 homolog (zebrafish)
mm10_v2_chr17_+_45734506_45734630	0.0383628	Hoxa3	ENSMUST00000180558.1|F630040K05Rik|ENSMUSG00000097727.1|RIKEN cDNA F630040K05 gene
mm10_v2_chr10_+_37139558_37139558	0.0307368	Hoxa3	ENSMUST00000062667.3|5930403N24Rik|ENSMUSG00000046463.3|RIKEN cDNA 5930403N24 gene
mm10_v2_chr3_-_86548268_86548290	0.0301968	Hoxa3	ENSMUST00000077524.3|Mab21l2|ENSMUSG00000057777.3|mab-21-like 2 (C. elegans)
mm10_v2_chr10_+_73821857_73821883	0.027595	Hoxa3	ENSMUST00000177128.1|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000064562.7|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000129404.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000105426.3|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000131321.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000126920.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000147189.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000105424.3|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000092420.6|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000105429.3|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000131724.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000152655.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000151116.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000155701.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000152819.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000125517.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000124046.1|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000149977.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000146682.1|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000177107.1|Pcdh15|ENSMUSG00000052613.10|protocadherin 15
mm10_v2_chr11_+_95384662_95384757	0.0270489	Hoxa3	ENSMUST00000021243.7|Slc35b1|ENSMUSG00000020873.7|solute carrier family 35, member B1 	ENSMUST00000146556.1|Slc35b1|ENSMUSG00000020873.7|solute carrier family 35, member B1
mm10_v2_chr3_-_72967854_72967869	0.0265634	Hoxa3	ENSMUST00000167334.1|Sis|ENSMUSG00000027790.8|sucrase isomaltase (alpha-glucosidase)
mm10_v2_chr9_-_77399308_77399418	0.0250689	Hoxa3	ENSMUST00000183878.1|RP23-264N13.2|ENSMUSG00000099170.1|RP23-264N13.2
mm10_v2_chrX_-_75416533_75416555	0.0226689	Hoxa3	ENSMUST00000033542.4|Mtcp1|ENSMUSG00000031200.10|mature T cell proliferation 1
mm10_v2_chr10_+_73821937_73821951	0.0189878	Hoxa3	ENSMUST00000134009.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000125006.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000177420.1|Pcdh15|ENSMUSG00000052613.10|protocadherin 15
mm10_v2_chr1_-_37916485_37916499	0.0181869	Hoxa3	ENSMUST00000078307.5|Lyg2|ENSMUSG00000061584.5|lysozyme G-like 2
mm10_v2_chr3_+_159839729_159839745	0.0180502	Hoxa3	ENSMUST00000068952.5|Wls|ENSMUSG00000028173.6|wntless homolog (Drosophila)
mm10_v2_chr4_-_14621805_14621819	0.0156742	Hoxa3	ENSMUST00000042221.7|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr2_-_116067391_116067444	0.0153372	Hoxa3	ENSMUST00000140185.1|2700033N17Rik|ENSMUSG00000086328.1|RIKEN cDNA 2700033N17 gene
mm10_v2_chr7_-_116038734_116038750	0.0152868	Hoxa3	ENSMUST00000166877.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr4_-_14621494_14621506	0.0149163	Hoxa3	ENSMUST00000149633.1|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr1_-_172027251_172027268	0.0148498	Hoxa3	ENSMUST00000138714.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr10_+_26772477_26772515	0.0129513	Hoxa3	ENSMUST00000039557.7|Arhgap18|ENSMUSG00000039031.9|Rho GTPase activating protein 18
mm10_v2_chr18_+_77332394_77332394	0.0119919	Hoxa3	ENSMUST00000148341.1|Loxhd1|ENSMUSG00000032818.9|lipoxygenase homology domains 1
mm10_v2_chrX_+_160768013_160768122	0.0115807	Hoxa3	ENSMUST00000033650.7|Rs1|ENSMUSG00000031293.7|retinoschisis (X-linked, juvenile) 1 (human)
mm10_v2_chr5_-_137531204_137531297	0.0108148	Hoxa3	ENSMUST00000150063.2|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2
mm10_v2_chr4_+_154964117_154964147	0.0106309	Hoxa3	ENSMUST00000030931.4|Pank4|ENSMUSG00000029056.7|pantothenate kinase 4 	ENSMUST00000070953.4|Pank4|ENSMUSG00000029056.7|pantothenate kinase 4
mm10_v2_chr15_-_101892916_101892921	0.00736556	Hoxa3	ENSMUST00000100179.1|Krt76|ENSMUSG00000075402.1|keratin 76
mm10_v2_chr2_-_168767029_168767104	0.00707561	Hoxa3	ENSMUST00000075044.3|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila)
mm10_v2_chr2_+_110721587_110721619	0.00627446	Hoxa3	ENSMUST00000111017.2|Muc15|ENSMUSG00000050808.7|mucin 15
mm10_v2_chr5_-_137531952_137531984	0.00342282	Hoxa3	ENSMUST00000140139.1|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2
mm10_v2_chr1_-_172027269_172027313	0.00312595	Hoxa3	ENSMUST00000027837.6|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila) 	ENSMUST00000111264.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr2_+_110721340_110721490	0.00286369	Hoxa3	ENSMUST00000111016.2|Muc15|ENSMUSG00000050808.7|mucin 15
mm10_v2_chr2_-_168767136_168767201	0.00136704	Hoxa3	ENSMUST00000029061.5|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila) 	ENSMUST00000103074.1|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila)
mm10_v2_chrX_+_160768179_160768183	0.00132487	Hoxa3	ENSMUST00000112368.2|Rs1|ENSMUSG00000031293.7|retinoschisis (X-linked, juvenile) 1 (human)
mm10_v2_chr10_+_40349265_40349387	0.000801076	Hoxa3	ENSMUST00000044672.4|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19 	ENSMUST00000095743.2|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19
mm10_v2_chr5_-_138187177_138187237	0.000176774	Hoxa3	ENSMUST00000110937.1|Taf6|ENSMUSG00000036980.7|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000139276.1|Taf6|ENSMUSG00000036980.7|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000048698.7|Taf6|ENSMUSG00000036980.7|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000123415.1|Taf6|ENSMUSG00000036980.7|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor
