mm10_v2_chr1_+_180111339_180111339	0.339535	Hoxd9	ENSMUST00000145181.1|Cdc42bpa|ENSMUSG00000026490.11|CDC42 binding protein kinase alpha
mm10_v2_chr1_-_128328311_128328326	0.305378	Hoxd9	ENSMUST00000073490.6|Lct|ENSMUSG00000026354.8|lactase
mm10_v2_chr6_-_147243794_147243806	0.223173	Hoxd9	ENSMUST00000153786.1|Gm15767|ENSMUSG00000086021.1|predicted gene 15767
mm10_v2_chr19_+_23723279_23723279	0.217455	Hoxd9	ENSMUST00000067077.1|Gm9938|ENSMUSG00000054178.1|predicted gene 9938
mm10_v2_chr2_+_14174513_14174546	0.205214	Hoxd9	ENSMUST00000077517.7|Tmem236|ENSMUSG00000061531.7|transmembrane protein 236
mm10_v2_chr1_-_82768449_82768465	0.198857	Hoxd9	ENSMUST00000027331.2|Tm4sf20|ENSMUSG00000026149.2|transmembrane 4 L six family member 20
mm10_v2_chr8_-_68121527_68121637	0.191016	Hoxd9	ENSMUST00000178529.1|Gm21807|ENSMUSG00000095306.1|predicted gene, 21807
mm10_v2_chr15_-_58364148_58364148	0.184568	Hoxd9	ENSMUST00000068515.7|Anxa13|ENSMUSG00000055114.7|annexin A13
mm10_v2_chr1_+_88211956_88211985	0.177611	Hoxd9	ENSMUST00000073049.6|Ugt1a1|ENSMUSG00000089960.1|UDP glucuronosyltransferase 1 family, polypeptide A1
mm10_v2_chr6_-_40951826_40951826	0.173219	Hoxd9	ENSMUST00000073642.5|Gm4744|ENSMUSG00000063252.5|predicted gene 4744
mm10_v2_chr17_-_40880525_40880579	0.159623	Hoxd9	ENSMUST00000068258.2|9130008F23Rik|ENSMUSG00000054951.2|RIKEN cDNA 9130008F23 gene
mm10_v2_chr12_+_8012359_8012419	0.154973	Hoxd9	ENSMUST00000171239.1|Apob|ENSMUSG00000020609.8|apolipoprotein B
mm10_v2_chr1_-_86111970_86111984	0.147557	Hoxd9	ENSMUST00000027431.6|Htr2b|ENSMUSG00000026228.6|5-hydroxytryptamine (serotonin) receptor 2B
mm10_v2_chr9_+_7347374_7347410	0.146357	Hoxd9	ENSMUST00000065079.5|Mmp12|ENSMUSG00000049723.8|matrix metallopeptidase 12 	ENSMUST00000005950.5|Mmp12|ENSMUSG00000049723.8|matrix metallopeptidase 12
mm10_v2_chr8_+_107119110_107119110	0.140172	Hoxd9	ENSMUST00000046116.1|C630050I24Rik|ENSMUSG00000040399.1|RIKEN cDNA C630050I24 gene
mm10_v2_chr1_-_130452416_130452530	0.133929	Hoxd9	ENSMUST00000140400.1|Cd55|ENSMUSG00000026399.6|CD55 antigen
mm10_v2_chr1_-_139377094_139377110	0.132731	Hoxd9	ENSMUST00000131586.1|Crb1|ENSMUSG00000063681.8|crumbs homolog 1 (Drosophila) 	ENSMUST00000145244.1|Crb1|ENSMUSG00000063681.8|crumbs homolog 1 (Drosophila)
mm10_v2_chr13_+_58281183_58281196	0.125653	Hoxd9	ENSMUST00000180882.1|Gm26555|ENSMUSG00000097399.1|predicted gene, 26555 	ENSMUST00000180452.1|Gm26555|ENSMUSG00000097399.1|predicted gene, 26555
mm10_v2_chr19_-_56548013_56548046	0.11744	Hoxd9	ENSMUST00000182059.1|Dclre1a|ENSMUSG00000025077.7|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
mm10_v2_chr2_+_43748802_43748875	0.114562	Hoxd9	ENSMUST00000112824.1|Arhgap15|ENSMUSG00000049744.9|Rho GTPase activating protein 15 	ENSMUST00000055776.7|Arhgap15|ENSMUSG00000049744.9|Rho GTPase activating protein 15
mm10_v2_chr6_+_122553799_122553816	0.110545	Hoxd9	ENSMUST00000043301.7|Aicda|ENSMUSG00000040627.8|activation-induced cytidine deaminase
mm10_v2_chr5_-_43235352_43235352	0.1063	Hoxd9	ENSMUST00000140650.2|Gm7854|ENSMUSG00000085720.2|predicted gene 7854
mm10_v2_chr16_-_23029012_23029026	0.105594	Hoxd9	ENSMUST00000039338.6|Kng2|ENSMUSG00000060459.7|kininogen 2
mm10_v2_chr1_-_168432270_168432347	0.0981125	Hoxd9	ENSMUST00000072863.4|Pbx1|ENSMUSG00000052534.9|pre B cell leukemia homeobox 1
mm10_v2_chr1_-_163289214_163289235	0.0946752	Hoxd9	ENSMUST00000183691.1|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1
mm10_v2_chr7_+_121707189_121707189	0.0946287	Hoxd9	ENSMUST00000065310.2|1700069B07Rik|ENSMUSG00000053081.2|RIKEN cDNA 1700069B07 gene
mm10_v2_chr5_-_87424201_87424205	0.0931282	Hoxd9	ENSMUST00000072818.5|Ugt2b38|ENSMUSG00000061906.5|UDP glucuronosyltransferase 2 family, polypeptide B38
mm10_v2_chr11_-_109472611_109472688	0.0909097	Hoxd9	ENSMUST00000168740.1|Slc16a6|ENSMUSG00000041920.8|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm10_v2_chr17_-_35910032_35910076	0.0899622	Hoxd9	ENSMUST00000141662.1|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000056034.6|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000077494.6|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000149277.1|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000061052.5|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1
mm10_v2_chr13_-_74376566_74376566	0.0884693	Hoxd9	ENSMUST00000091481.2|Zfp72|ENSMUSG00000069184.2|zinc finger protein 72
mm10_v2_chr1_-_97761538_97761609	0.0878109	Hoxd9	ENSMUST00000171129.1|Ppip5k2|ENSMUSG00000040648.8|diphosphoinositol pentakisphosphate kinase 2
mm10_v2_chr3_+_138415484_138415510	0.0867785	Hoxd9	ENSMUST00000161312.1|Adh4|ENSMUSG00000037797.8|alcohol dehydrogenase 4 (class II), pi polypeptide 	ENSMUST00000013458.8|Adh4|ENSMUSG00000037797.8|alcohol dehydrogenase 4 (class II), pi polypeptide
mm10_v2_chr10_-_19014549_19014589	0.0858159	Hoxd9	ENSMUST00000146388.1|Tnfaip3|ENSMUSG00000019850.5|tumor necrosis factor, alpha-induced protein 3
mm10_v2_chr12_+_38783503_38783527	0.0843597	Hoxd9	ENSMUST00000159334.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr17_+_47649621_47649621	0.0843037	Hoxd9	ENSMUST00000145314.1|Usp49|ENSMUSG00000090115.1|ubiquitin specific peptidase 49
mm10_v2_chr3_+_35754121_35754135	0.0824541	Hoxd9	ENSMUST00000108186.1|Atp11b|ENSMUSG00000037400.10|ATPase, class VI, type 11B 	ENSMUST00000029257.8|Atp11b|ENSMUSG00000037400.10|ATPase, class VI, type 11B
mm10_v2_chr9_-_18385981_18386068	0.0823033	Hoxd9	ENSMUST00000166825.1|Naalad2|ENSMUSG00000043943.8|N-acetylated alpha-linked acidic dipeptidase 2
mm10_v2_chr16_-_50330987_50331017	0.0811481	Hoxd9	ENSMUST00000114488.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila)
mm10_v2_chr16_-_23029080_23029106	0.074613	Hoxd9	ENSMUST00000100046.2|Kng2|ENSMUSG00000060459.7|kininogen 2
mm10_v2_chr11_+_29373618_29373777	0.0741208	Hoxd9	ENSMUST00000040182.6|Ccdc88a|ENSMUSG00000032740.10|coiled coil domain containing 88A 	ENSMUST00000109477.1|Ccdc88a|ENSMUSG00000032740.10|coiled coil domain containing 88A
mm10_v2_chr16_-_79091078_79091107	0.0696372	Hoxd9	ENSMUST00000023566.4|Tmprss15|ENSMUSG00000022857.7|transmembrane protease, serine 15 	ENSMUST00000060402.5|Tmprss15|ENSMUSG00000022857.7|transmembrane protease, serine 15
mm10_v2_chr8_-_41016295_41016321	0.0693893	Hoxd9	ENSMUST00000131965.1|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1
mm10_v2_chr1_-_139377041_139377078	0.0646175	Hoxd9	ENSMUST00000059825.5|Crb1|ENSMUSG00000063681.8|crumbs homolog 1 (Drosophila)
mm10_v2_chr7_-_29906524_29906572	0.0645554	Hoxd9	ENSMUST00000159920.1|Zfp27|ENSMUSG00000062040.8|zinc finger protein 27 	ENSMUST00000162592.1|Zfp27|ENSMUSG00000062040.8|zinc finger protein 27
mm10_v2_chr9_-_39604124_39604403	0.063734	Hoxd9	ENSMUST00000042485.4|AW551984|ENSMUSG00000038112.9|expressed sequence AW551984 	ENSMUST00000141370.1|AW551984|ENSMUSG00000038112.9|expressed sequence AW551984
mm10_v2_chr5_-_113310697_113310727	0.0624529	Hoxd9	ENSMUST00000154248.1|Sgsm1|ENSMUSG00000042216.7|small G protein signaling modulator 1
mm10_v2_chr18_+_80046854_80046904	0.0620033	Hoxd9	ENSMUST00000070219.7|Pard6g|ENSMUSG00000056214.8|par-6 partitioning defective 6 homolog gamma (C. elegans)
mm10_v2_chr3_-_144819494_144819494	0.0618386	Hoxd9	ENSMUST00000029929.7|Clca2|ENSMUSG00000028262.9|chloride channel calcium activated 2
mm10_v2_chrX_-_134111852_134111873	0.0616414	Hoxd9	ENSMUST00000033610.6|Nox1|ENSMUSG00000031257.8|NADPH oxidase 1
mm10_v2_chr19_-_57197435_57197460	0.0593967	Hoxd9	ENSMUST00000111550.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr19_-_56548122_56548222	0.0592931	Hoxd9	ENSMUST00000026063.5|Dclre1a|ENSMUSG00000025077.7|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae) 	ENSMUST00000182276.1|Dclre1a|ENSMUSG00000025077.7|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
mm10_v2_chr14_-_100149764_100149764	0.0544342	Hoxd9	ENSMUST00000097079.4|Klf12|ENSMUSG00000072294.4|Kruppel-like factor 12
mm10_v2_chr4_-_94650092_94650127	0.0529617	Hoxd9	ENSMUST00000107101.1|Lrrc19|ENSMUSG00000049799.7|leucine rich repeat containing 19
mm10_v2_chr18_+_32067729_32067811	0.0521821	Hoxd9	ENSMUST00000025243.3|Iws1|ENSMUSG00000024384.3|IWS1 homolog (S. cerevisiae)
mm10_v2_chr19_-_29753600_29753600	0.0511038	Hoxd9	ENSMUST00000175764.1|9930021J03Rik|ENSMUSG00000046138.8|RIKEN cDNA 9930021J03 gene
mm10_v2_chr19_+_39113898_39113916	0.0506946	Hoxd9	ENSMUST00000087234.2|Cyp2c66|ENSMUSG00000067229.3|cytochrome P450, family 2, subfamily c, polypeptide 66
mm10_v2_chr1_+_88200601_88200631	0.0498019	Hoxd9	ENSMUST00000049289.8|Ugt1a2|ENSMUSG00000090171.1|UDP glucuronosyltransferase 1 family, polypeptide A2
mm10_v2_chr19_-_57197496_57197536	0.0488496	Hoxd9	ENSMUST00000111544.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr14_+_26894557_26894604	0.0486908	Hoxd9	ENSMUST00000090337.4|Asb14|ENSMUSG00000021898.8|ankyrin repeat and SOCS box-containing 14 	ENSMUST00000165929.2|Asb14|ENSMUSG00000021898.8|ankyrin repeat and SOCS box-containing 14
mm10_v2_chr16_-_23029062_23029076	0.0473702	Hoxd9	ENSMUST00000115349.2|Kng2|ENSMUSG00000060459.7|kininogen 2
mm10_v2_chr19_+_56548254_56548283	0.0466383	Hoxd9	ENSMUST00000071423.5|Nhlrc2|ENSMUSG00000025078.8|NHL repeat containing 2
mm10_v2_chr2_-_63184253_63184292	0.0457501	Hoxd9	ENSMUST00000075052.3|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7 	ENSMUST00000112454.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr19_-_57197377_57197417	0.045056	Hoxd9	ENSMUST00000111546.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr1_-_37536232_37536236	0.0450327	Hoxd9	ENSMUST00000042161.8|Mgat4a|ENSMUSG00000026110.9|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm10_v2_chr8_+_66386292_66386308	0.0428067	Hoxd9	ENSMUST00000039540.5|March1|ENSMUSG00000036469.10|membrane-associated ring finger (C3HC4) 1 	ENSMUST00000110253.2|March1|ENSMUSG00000036469.10|membrane-associated ring finger (C3HC4) 1
mm10_v2_chr14_-_75754475_75754563	0.0427996	Hoxd9	ENSMUST00000049168.7|Cog3|ENSMUSG00000034893.7|component of oligomeric golgi complex 3
mm10_v2_chr18_+_37355271_37355271	0.0404887	Hoxd9	ENSMUST00000051163.1|Pcdhb8|ENSMUSG00000045876.3|protocadherin beta 8
mm10_v2_chr13_-_12520377_12520450	0.0402212	Hoxd9	ENSMUST00000179308.1|Edaradd|ENSMUSG00000095105.1|EDAR (ectodysplasin-A receptor)-associated death domain
mm10_v2_chrX_-_49797700_49797755	0.0399105	Hoxd9	ENSMUST00000033442.7|Igsf1|ENSMUSG00000031111.10|immunoglobulin superfamily, member 1 	ENSMUST00000114891.1|Igsf1|ENSMUSG00000031111.10|immunoglobulin superfamily, member 1
mm10_v2_chr1_-_128102412_128102485	0.0394085	Hoxd9	ENSMUST00000112538.1|Zranb3|ENSMUSG00000036086.10|zinc finger, RAN-binding domain containing 3 	ENSMUST00000086614.5|Zranb3|ENSMUSG00000036086.10|zinc finger, RAN-binding domain containing 3
mm10_v2_chr15_-_37459327_37459380	0.0393666	Hoxd9	ENSMUST00000119730.1|Ncald|ENSMUSG00000051359.8|neurocalcin delta 	ENSMUST00000120746.1|Ncald|ENSMUSG00000051359.8|neurocalcin delta
mm10_v2_chrX_-_134751331_134751424	0.0391593	Hoxd9	ENSMUST00000113194.1|Armcx6|ENSMUSG00000050394.8|armadillo repeat containing, X-linked 6 	ENSMUST00000052431.5|Armcx6|ENSMUSG00000050394.8|armadillo repeat containing, X-linked 6
mm10_v2_chr17_-_45474839_45474938	0.0387515	Hoxd9	ENSMUST00000024731.8|Spats1|ENSMUSG00000023935.9|spermatogenesis associated, serine-rich 1
mm10_v2_chr17_-_78684262_78684352	0.0372274	Hoxd9	ENSMUST00000145480.1|Strn|ENSMUSG00000024077.9|striatin, calmodulin binding protein
mm10_v2_chr3_-_104777483_104777547	0.0359719	Hoxd9	ENSMUST00000139783.1|Fam19a3|ENSMUSG00000055865.8|family with sequence similarity 19, member A3
mm10_v2_chr10_-_127030789_127030812	0.0355142	Hoxd9	ENSMUST00000120547.1|Tsfm|ENSMUSG00000040521.5|Ts translation elongation factor, mitochondrial 	ENSMUST00000152054.1|Tsfm|ENSMUSG00000040521.5|Ts translation elongation factor, mitochondrial
mm10_v2_chrX_-_111697069_111697127	0.030912	Hoxd9	ENSMUST00000113422.2|Hdx|ENSMUSG00000034551.6|highly divergent homeobox 	ENSMUST00000038472.5|Hdx|ENSMUSG00000034551.6|highly divergent homeobox
mm10_v2_chr5_-_66514815_66514837	0.0306672	Hoxd9	ENSMUST00000161879.1|Apbb2|ENSMUSG00000029207.10|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENSMUST00000159357.1|Apbb2|ENSMUSG00000029207.10|amyloid beta (A4) precursor protein-binding, family B, member 2
mm10_v2_chr2_+_91526756_91526763	0.0300482	Hoxd9	ENSMUST00000111338.3|Ckap5|ENSMUSG00000040549.10|cytoskeleton associated protein 5
mm10_v2_chrX_+_85048309_85048413	0.0285394	Hoxd9	ENSMUST00000113991.1|Dmd|ENSMUSG00000045103.11|dystrophin, muscular dystrophy 	ENSMUST00000113992.2|Dmd|ENSMUSG00000045103.11|dystrophin, muscular dystrophy
mm10_v2_chr12_+_59129757_59129818	0.0276006	Hoxd9	ENSMUST00000069430.8|Ctage5|ENSMUSG00000021000.9|CTAGE family, member 5 	ENSMUST00000177370.1|Ctage5|ENSMUSG00000021000.9|CTAGE family, member 5
mm10_v2_chr11_-_61720795_61720803	0.0272796	Hoxd9	ENSMUST00000051552.4|Slc5a10|ENSMUSG00000042371.6|solute carrier family 5 (sodium/glucose cotransporter), member 10
mm10_v2_chr13_-_100246323_100246323	0.0270861	Hoxd9	ENSMUST00000049789.2|Naip5|ENSMUSG00000071203.6|NLR family, apoptosis inhibitory protein 5
mm10_v2_chr5_+_87925579_87925621	0.0266143	Hoxd9	ENSMUST00000001667.6|Csn3|ENSMUSG00000001622.9|casein kappa 	ENSMUST00000113267.1|Csn3|ENSMUSG00000001622.9|casein kappa
mm10_v2_chr13_-_3945349_3945349	0.0265057	Hoxd9	ENSMUST00000058610.7|Ucn3|ENSMUSG00000044988.7|urocortin 3
mm10_v2_chr1_-_24612700_24612700	0.0242335	Hoxd9	ENSMUST00000088336.1|Gm10222|ENSMUSG00000067736.1|predicted gene 10222
mm10_v2_chr2_+_125136692_125136769	0.0219267	Hoxd9	ENSMUST00000099452.2|Ctxn2|ENSMUSG00000074872.2|cortexin 2
mm10_v2_chr7_-_34313531_34313568	0.0217591	Hoxd9	ENSMUST00000108074.1|4931406P16Rik|ENSMUSG00000066571.7|RIKEN cDNA 4931406P16 gene
mm10_v2_chr13_-_96435952_96435967	0.0214828	Hoxd9	ENSMUST00000181761.1|Ankdd1b|ENSMUSG00000047117.6|ankyrin repeat and death domain containing 1B
mm10_v2_chr17_-_32166879_32166898	0.0210862	Hoxd9	ENSMUST00000087723.3|Notch3|ENSMUSG00000038146.7|notch 3
mm10_v2_chr9_-_21989427_21989456	0.0200321	Hoxd9	ENSMUST00000045726.6|Rgl3|ENSMUSG00000040146.8|ral guanine nucleotide dissociation stimulator-like 3
mm10_v2_chr17_+_75435886_75435937	0.019609	Hoxd9	ENSMUST00000164192.1|Rasgrp3|ENSMUSG00000071042.5|RAS, guanyl releasing protein 3
mm10_v2_chr1_+_194619815_194619833	0.0195209	Hoxd9	ENSMUST00000027952.5|Plxna2|ENSMUSG00000026640.6|plexin A2
mm10_v2_chr3_+_32436376_32436376	0.0194691	Hoxd9	ENSMUST00000108242.1|Pik3ca|ENSMUSG00000027665.7|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm10_v2_chrX_-_10216918_10216921	0.0193693	Hoxd9	ENSMUST00000072393.2|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator 	ENSMUST00000044598.6|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator 	ENSMUST00000073392.4|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator 	ENSMUST00000115533.1|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator 	ENSMUST00000115532.1|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator
mm10_v2_chr14_-_36919314_36919352	0.0188917	Hoxd9	ENSMUST00000182797.1|Ccser2|ENSMUSG00000058690.8|coiled-coil serine rich 2
mm10_v2_chr1_-_140183404_140183415	0.0179683	Hoxd9	ENSMUST00000066859.6|Cfh|ENSMUSG00000026365.9|complement component factor h 	ENSMUST00000111976.2|Cfh|ENSMUSG00000026365.9|complement component factor h
mm10_v2_chr7_+_120851183_120851201	0.0176361	Hoxd9	ENSMUST00000106487.1|Eef2k|ENSMUSG00000035064.10|eukaryotic elongation factor-2 kinase 	ENSMUST00000143322.1|Eef2k|ENSMUSG00000035064.10|eukaryotic elongation factor-2 kinase 	ENSMUST00000106488.1|Eef2k|ENSMUSG00000035064.10|eukaryotic elongation factor-2 kinase
mm10_v2_chr3_+_114030532_114030571	0.0176193	Hoxd9	ENSMUST00000123619.1|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1 	ENSMUST00000092155.5|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1
mm10_v2_chr3_-_65958236_65958252	0.0175894	Hoxd9	ENSMUST00000029416.7|Ccnl1|ENSMUSG00000027829.9|cyclin L1
mm10_v2_chr7_+_30565410_30565432	0.0169579	Hoxd9	ENSMUST00000043850.7|Igflr1|ENSMUSG00000036826.8|IGF-like family receptor 1
mm10_v2_chr5_-_103977326_103977356	0.0169317	Hoxd9	ENSMUST00000120320.1|Hsd17b13|ENSMUSG00000034528.9|hydroxysteroid (17-beta) dehydrogenase 13
mm10_v2_chr6_+_84008540_84008590	0.0151882	Hoxd9	ENSMUST00000113821.1|Dysf|ENSMUSG00000033788.9|dysferlin 	ENSMUST00000113823.1|Dysf|ENSMUSG00000033788.9|dysferlin
mm10_v2_chr2_-_37647199_37647285	0.0149102	Hoxd9	ENSMUST00000028279.3|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr6_-_142473075_142473115	0.0129377	Hoxd9	ENSMUST00000032371.7|Gys2|ENSMUSG00000030244.7|glycogen synthase 2
mm10_v2_chr8_+_71887264_71887264	0.0123177	Hoxd9	ENSMUST00000034259.7|Zfp709|ENSMUSG00000056019.6|zinc finger protein 709
mm10_v2_chr15_+_81744848_81744848	0.0108861	Hoxd9	ENSMUST00000109554.1|Zc3h7b|ENSMUSG00000022390.10|zinc finger CCCH type containing 7B
mm10_v2_chr12_+_59129720_59129755	0.010168	Hoxd9	ENSMUST00000175912.1|Ctage5|ENSMUSG00000021000.9|CTAGE family, member 5 	ENSMUST00000176892.1|Ctage5|ENSMUSG00000021000.9|CTAGE family, member 5
mm10_v2_chr5_-_113310729_113310788	0.00997028	Hoxd9	ENSMUST00000112325.1|Sgsm1|ENSMUSG00000042216.7|small G protein signaling modulator 1 	ENSMUST00000048112.6|Sgsm1|ENSMUSG00000042216.7|small G protein signaling modulator 1
mm10_v2_chr10_+_23920356_23920356	0.0098767	Hoxd9	ENSMUST00000051532.4|Taar1|ENSMUSG00000056379.3|trace amine-associated receptor 1
mm10_v2_chr9_-_96437434_96437434	0.00920257	Hoxd9	ENSMUST00000070500.2|BC043934|ENSMUSG00000056418.2|cDNA sequence BC043934
mm10_v2_chr9_+_78051938_78051958	0.00840317	Hoxd9	ENSMUST00000024104.7|Gcm1|ENSMUSG00000023333.7|glial cells missing homolog 1 (Drosophila)
mm10_v2_chr11_+_110968016_110968042	0.00735299	Hoxd9	ENSMUST00000106636.1|Kcnj16|ENSMUSG00000051497.9|potassium inwardly-rectifying channel, subfamily J, member 16 	ENSMUST00000180023.1|Kcnj16|ENSMUSG00000051497.9|potassium inwardly-rectifying channel, subfamily J, member 16
mm10_v2_chr2_-_116064721_116064749	0.0072252	Hoxd9	ENSMUST00000110906.2|Meis2|ENSMUSG00000027210.14|Meis homeobox 2
mm10_v2_chr4_+_136143497_136143497	0.00651113	Hoxd9	ENSMUST00000008016.2|Id3|ENSMUSG00000007872.3|inhibitor of DNA binding 3
mm10_v2_chr12_+_36314160_36314171	0.0056297	Hoxd9	ENSMUST00000041407.5|Sostdc1|ENSMUSG00000036169.5|sclerostin domain containing 1
mm10_v2_chr16_-_65562686_65562769	0.00452155	Hoxd9	ENSMUST00000004965.6|Chmp2b|ENSMUSG00000004843.6|charged multivesicular body protein 2B
mm10_v2_chr2_-_140671462_140671476	0.00447955	Hoxd9	ENSMUST00000110057.2|Flrt3|ENSMUSG00000051379.6|fibronectin leucine rich transmembrane protein 3
mm10_v2_chr16_+_20696175_20696211	0.004317	Hoxd9	ENSMUST00000128273.1|Fam131a|ENSMUSG00000050821.7|family with sequence similarity 131, member A
mm10_v2_chr10_+_127420867_127420916	0.00431534	Hoxd9	ENSMUST00000064793.6|R3hdm2|ENSMUSG00000025404.9|R3H domain containing 2
mm10_v2_chr1_-_139781236_139781239	0.00351884	Hoxd9	ENSMUST00000027612.8|Gm4788|ENSMUSG00000070594.4|predicted gene 4788 	ENSMUST00000111989.2|Gm4788|ENSMUSG00000070594.4|predicted gene 4788 	ENSMUST00000111986.2|Gm4788|ENSMUSG00000070594.4|predicted gene 4788
mm10_v2_chr11_-_55607733_55607822	0.00336603	Hoxd9	ENSMUST00000108853.1|Glra1|ENSMUSG00000000263.9|glycine receptor, alpha 1 subunit 	ENSMUST00000075603.4|Glra1|ENSMUSG00000000263.9|glycine receptor, alpha 1 subunit
mm10_v2_chr1_+_183388981_183388981	0.00294352	Hoxd9	ENSMUST00000097043.5|Taf1a|ENSMUSG00000072258.5|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, A
mm10_v2_chr8_-_84249701_84249761	0.00251959	Hoxd9	ENSMUST00000019506.7|D8Ertd738e|ENSMUSG00000019362.7|DNA segment, Chr 8, ERATO Doi 738, expressed
mm10_v2_chr8_+_107031218_107031229	0.00190962	Hoxd9	ENSMUST00000034388.9|Vps4a|ENSMUSG00000031913.9|vacuolar protein sorting 4a (yeast)
mm10_v2_chr1_-_175491130_175491130	0.0018911	Hoxd9	ENSMUST00000027812.5|Rgs7|ENSMUSG00000026527.8|regulator of G protein signaling 7
mm10_v2_chr2_+_69790968_69790973	0.00145749	Hoxd9	ENSMUST00000180290.1|Phospho2|ENSMUSG00000027088.4|phosphatase, orphan 2
mm10_v2_chr7_+_45621805_45621825	0.000863432	Hoxd9	ENSMUST00000033100.4|Izumo1|ENSMUSG00000064158.4|izumo sperm-egg fusion 1
mm10_v2_chr6_+_11925869_11925941	0.000584447	Hoxd9	ENSMUST00000115510.1|Phf14|ENSMUSG00000029629.10|PHD finger protein 14 	ENSMUST00000115511.2|Phf14|ENSMUSG00000029629.10|PHD finger protein 14 	ENSMUST00000090632.4|Phf14|ENSMUSG00000029629.10|PHD finger protein 14
mm10_v2_chr15_+_39006272_39006365	0.000490332	Hoxd9	ENSMUST00000179165.1|Fzd6|ENSMUSG00000022297.8|frizzled homolog 6 (Drosophila) 	ENSMUST00000022906.7|Fzd6|ENSMUSG00000022297.8|frizzled homolog 6 (Drosophila)
mm10_v2_chr6_+_48537560_48537622	0.000259615	Hoxd9	ENSMUST00000040361.5|Atp6v0e2|ENSMUSG00000039347.5|ATPase, H+ transporting, lysosomal V0 subunit E2
