mm10_v2_chr6_-_145048809_145048821	2.04979	Pax1_Pax9	ENSMUST00000032402.5|Bcat1|ENSMUSG00000030268.11|branched chain aminotransferase 1, cytosolic
mm10_v2_chr9_-_22389113_22389206	1.25072	Pax1_Pax9	ENSMUST00000040912.7|Anln|ENSMUSG00000036777.7|anillin, actin binding protein
mm10_v2_chr2_+_178193075_178193099	1.04962	Pax1_Pax9	ENSMUST00000103065.1|Phactr3|ENSMUSG00000027525.11|phosphatase and actin regulator 3
mm10_v2_chr5_+_112255813_112255874	0.718936	Pax1_Pax9	ENSMUST00000031286.6|Crybb1|ENSMUSG00000029343.11|crystallin, beta B1 	ENSMUST00000131673.1|Crybb1|ENSMUSG00000029343.11|crystallin, beta B1 	ENSMUST00000112375.1|Crybb1|ENSMUSG00000029343.11|crystallin, beta B1
mm10_v2_chr4_+_115000156_115000170	0.652357	Pax1_Pax9	ENSMUST00000030490.6|Stil|ENSMUSG00000028718.10|Scl/Tal1 interrupting locus
mm10_v2_chr15_-_84105662_84105754	0.533616	Pax1_Pax9	ENSMUST00000082365.5|Sult4a1|ENSMUSG00000018865.8|sulfotransferase family 4A, member 1
mm10_v2_chr4_+_11558914_11558979	0.500261	Pax1_Pax9	ENSMUST00000178703.1|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae) 	ENSMUST00000095145.5|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae) 	ENSMUST00000108306.2|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae) 	ENSMUST00000070755.6|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae)
mm10_v2_chr1_-_37719782_37719899	0.442608	Pax1_Pax9	ENSMUST00000160589.1|2010300C02Rik|ENSMUSG00000026090.10|RIKEN cDNA 2010300C02 gene
mm10_v2_chr7_+_48789003_48789060	0.425876	Pax1_Pax9	ENSMUST00000118927.1|Zdhhc13|ENSMUSG00000030471.11|zinc finger, DHHC domain containing 13 	ENSMUST00000125280.1|Zdhhc13|ENSMUSG00000030471.11|zinc finger, DHHC domain containing 13
mm10_v2_chr4_+_115000174_115000189	0.425696	Pax1_Pax9	ENSMUST00000129957.1|Stil|ENSMUSG00000028718.10|Scl/Tal1 interrupting locus
mm10_v2_chr13_-_62607499_62607499	0.311197	Pax1_Pax9	ENSMUST00000091563.4|6720489N17Rik|ENSMUSG00000072066.3|RIKEN cDNA 6720489N17 gene
mm10_v2_chr5_-_129787175_129787259	0.284731	Pax1_Pax9	ENSMUST00000031399.6|Psph|ENSMUSG00000029446.8|phosphoserine phosphatase
mm10_v2_chr5_+_129787390_129787439	0.263912	Pax1_Pax9	ENSMUST00000031402.8|Cct6a|ENSMUSG00000029447.8|chaperonin containing Tcp1, subunit 6a (zeta)
mm10_v2_chr10_+_75573448_75573464	0.186203	Pax1_Pax9	ENSMUST00000006508.3|Ggt1|ENSMUSG00000006345.4|gamma-glutamyltransferase 1
mm10_v2_chr9_+_21337828_21337859	0.129893	Pax1_Pax9	ENSMUST00000034697.7|Slc44a2|ENSMUSG00000057193.7|solute carrier family 44, member 2
mm10_v2_chr18_+_69344503_69344530	0.126908	Pax1_Pax9	ENSMUST00000114985.3|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr8_-_94838255_94838358	0.123837	Pax1_Pax9	ENSMUST00000161762.1|Ciapin1|ENSMUSG00000031781.7|cytokine induced apoptosis inhibitor 1 	ENSMUST00000162538.1|Ciapin1|ENSMUSG00000031781.7|cytokine induced apoptosis inhibitor 1
mm10_v2_chr3_-_117360876_117360876	0.108972	Pax1_Pax9	ENSMUST00000061071.8|D3Bwg0562e|ENSMUSG00000044667.8|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed
mm10_v2_chr12_+_33957645_33957671	0.0835099	Pax1_Pax9	ENSMUST00000049089.5|Twist1|ENSMUSG00000035799.5|twist basic helix-loop-helix transcription factor 1
mm10_v2_chr9_+_65361049_65361060	0.0730394	Pax1_Pax9	ENSMUST00000147185.1|Gm514|ENSMUSG00000086228.1|predicted gene 514
mm10_v2_chr2_-_33468493_33468572	0.0675838	Pax1_Pax9	ENSMUST00000113156.1|Zbtb43|ENSMUSG00000026788.7|zinc finger and BTB domain containing 43 	ENSMUST00000028125.5|Zbtb43|ENSMUSG00000026788.7|zinc finger and BTB domain containing 43 	ENSMUST00000126442.1|Zbtb43|ENSMUSG00000026788.7|zinc finger and BTB domain containing 43
mm10_v2_chr9_+_96196246_96196280	0.0492073	Pax1_Pax9	ENSMUST00000165120.2|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2 	ENSMUST00000034982.9|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2
mm10_v2_chr19_+_8840519_8840549	0.0489836	Pax1_Pax9	ENSMUST00000086058.6|Bscl2|ENSMUSG00000071657.6|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)
mm10_v2_chr8_+_94838321_94838429	0.0454273	Pax1_Pax9	ENSMUST00000034234.8|Coq9|ENSMUSG00000031782.8|coenzyme Q9 homolog (yeast) 	ENSMUST00000159871.1|Coq9|ENSMUSG00000031782.8|coenzyme Q9 homolog (yeast)
mm10_v2_chr5_-_93206428_93206470	0.0440132	Pax1_Pax9	ENSMUST00000144514.1|Ccni|ENSMUSG00000063015.6|cyclin I
mm10_v2_chr13_-_62777089_62777089	0.0388341	Pax1_Pax9	ENSMUST00000167516.2|Gm5141|ENSMUSG00000091183.2|predicted gene 5141
mm10_v2_chr17_-_27909206_27909264	0.0379396	Pax1_Pax9	ENSMUST00000114848.1|Taf11|ENSMUSG00000024218.6|TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr2_-_36105271_36105434	0.0368263	Pax1_Pax9	ENSMUST00000112960.1|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6 	ENSMUST00000112967.5|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6 	ENSMUST00000112963.1|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6
mm10_v2_chr8_+_31150307_31150346	0.0365018	Pax1_Pax9	ENSMUST00000098842.2|Tti2|ENSMUSG00000031577.9|TELO2 interacting protein 2
mm10_v2_chr11_+_83753689_83753722	0.0338407	Pax1_Pax9	ENSMUST00000001002.7|Heatr6|ENSMUSG00000000976.7|HEAT repeat containing 6
mm10_v2_chr5_+_91074611_91074629	0.0307662	Pax1_Pax9	ENSMUST00000031324.4|Ereg|ENSMUSG00000029377.4|epiregulin
mm10_v2_chr19_-_29047847_29047977	0.0261603	Pax1_Pax9	ENSMUST00000025696.4|Ak3|ENSMUSG00000024782.7|adenylate kinase 3
mm10_v2_chr4_-_117375453_117375467	0.0228243	Pax1_Pax9	ENSMUST00000094853.2|Rnf220|ENSMUSG00000028677.12|ring finger protein 220
mm10_v2_chr5_-_93206489_93206498	0.0216711	Pax1_Pax9	ENSMUST00000058550.8|Ccni|ENSMUSG00000063015.6|cyclin I
mm10_v2_chr13_-_62520451_62520544	0.0200068	Pax1_Pax9	ENSMUST00000082203.6|Zfp934|ENSMUSG00000074865.4|zinc finger protein 934 	ENSMUST00000101547.4|Zfp934|ENSMUSG00000074865.4|zinc finger protein 934
mm10_v2_chr4_-_110286581_110286617	0.0189492	Pax1_Pax9	ENSMUST00000138972.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm10_v2_chr9_-_97111117_97111159	0.0169107	Pax1_Pax9	ENSMUST00000085206.4|Slc25a36|ENSMUSG00000032449.7|solute carrier family 25, member 36
