mm10_v2_chr15_-_102366314_102366338	0.18619	Rara	ENSMUST00000078508.5|Sp7|ENSMUSG00000060284.6|Sp7 transcription factor 7
mm10_v2_chr7_-_141429351_141429429	0.122628	Rara	ENSMUST00000164387.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1 	ENSMUST00000137488.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1 	ENSMUST00000084436.3|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1
mm10_v2_chr14_+_55618023_55618037	0.118501	Rara	ENSMUST00000002395.7|Rec8|ENSMUSG00000002324.7|REC8 homolog (yeast)
mm10_v2_chrX_-_59567348_59567472	0.116684	Rara	ENSMUST00000124402.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr7_-_141429433_141429491	0.0883934	Rara	ENSMUST00000124444.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1
mm10_v2_chr11_+_98960412_98960485	0.0869888	Rara	ENSMUST00000107473.2|Rara|ENSMUSG00000037992.10|retinoic acid receptor, alpha
mm10_v2_chr10_+_4611971_4612021	0.0819258	Rara	ENSMUST00000105590.1|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha) 	ENSMUST00000067086.7|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha)
mm10_v2_chr1_+_157458554_157458597	0.0816284	Rara	ENSMUST00000046743.4|BC026585|ENSMUSG00000033488.5|cDNA sequence BC026585 	ENSMUST00000119891.1|BC026585|ENSMUSG00000033488.5|cDNA sequence BC026585
mm10_v2_chr10_+_70868633_70868669	0.0650903	Rara	ENSMUST00000058942.5|4930533K18Rik|ENSMUSG00000047692.5|RIKEN cDNA 4930533K18 gene
mm10_v2_chr7_-_44670820_44670862	0.0578168	Rara	ENSMUST00000048102.7|Myh14|ENSMUSG00000030739.11|myosin, heavy polypeptide 14
mm10_v2_chr5_+_135806859_135806902	0.0558477	Rara	ENSMUST00000126232.1|Srrm3|ENSMUSG00000039860.13|serine/arginine repetitive matrix 3
mm10_v2_chr10_+_19951055_19951055	0.0518824	Rara	ENSMUST00000152533.1|Map3k5|ENSMUSG00000071369.4|mitogen-activated protein kinase kinase kinase 5
mm10_v2_chr3_-_54915867_54915887	0.0511656	Rara	ENSMUST00000070342.3|Sertm1|ENSMUSG00000056306.5|serine rich and transmembrane domain containing 1
mm10_v2_chr5_-_137625069_137625079	0.0504962	Rara	ENSMUST00000031732.7|Fbxo24|ENSMUSG00000089984.1|F-box protein 24
mm10_v2_chr4_-_46991842_46991916	0.0436685	Rara	ENSMUST00000107749.2|Gabbr2|ENSMUSG00000039809.9|gamma-aminobutyric acid (GABA) B receptor, 2
mm10_v2_chr11_-_5261558_5261637	0.0435583	Rara	ENSMUST00000020662.8|Kremen1|ENSMUSG00000020393.10|kringle containing transmembrane protein 1
mm10_v2_chr15_+_82256023_82256130	0.0430661	Rara	ENSMUST00000143238.1|1500009C09Rik|ENSMUSG00000068099.4|RIKEN cDNA 1500009C09 gene
mm10_v2_chr11_+_4986824_4986894	0.0414611	Rara	ENSMUST00000009234.9|Ap1b1|ENSMUSG00000009090.11|adaptor protein complex AP-1, beta 1 subunit 	ENSMUST00000109897.1|Ap1b1|ENSMUSG00000009090.11|adaptor protein complex AP-1, beta 1 subunit
mm10_v2_chr12_+_87026564_87026616	0.0408652	Rara	ENSMUST00000110187.1|Tmem63c|ENSMUSG00000034145.8|transmembrane protein 63c 	ENSMUST00000156162.1|Tmem63c|ENSMUSG00000034145.8|transmembrane protein 63c
mm10_v2_chr14_+_64588112_64588120	0.0405002	Rara	ENSMUST00000181808.1|A930011O12Rik|ENSMUSG00000097545.1|RIKEN cDNA A930011O12 gene
mm10_v2_chr2_-_25617672_25617689	0.0391088	Rara	ENSMUST00000028309.3|4921530D09Rik|ENSMUSG00000026940.3|RIKEN cDNA 4921530D09 gene
mm10_v2_chr11_+_3488275_3488287	0.0374163	Rara	ENSMUST00000064265.6|Pla2g3|ENSMUSG00000034579.11|phospholipase A2, group III
mm10_v2_chr1_-_175692624_175692776	0.0368579	Rara	ENSMUST00000027809.7|Opn3|ENSMUSG00000026525.9|opsin 3
mm10_v2_chr6_+_91157373_91157397	0.0347226	Rara	ENSMUST00000155007.1|Hdac11|ENSMUSG00000034245.4|histone deacetylase 11
mm10_v2_chr17_+_34593388_34593417	0.0340924	Rara	ENSMUST00000174532.1|Pbx2|ENSMUSG00000034673.8|pre B cell leukemia homeobox 2
mm10_v2_chr8_-_119778380_119778431	0.0334628	Rara	ENSMUST00000049156.5|Tldc1|ENSMUSG00000034105.8|TBC/LysM associated domain containing 1
mm10_v2_chr4_+_141444654_141444714	0.0333845	Rara	ENSMUST00000006377.6|Zbtb17|ENSMUSG00000006215.6|zinc finger and BTB domain containing 17
mm10_v2_chr11_-_5915124_5915141	0.0326426	Rara	ENSMUST00000109823.2|Gck|ENSMUSG00000041798.9|glucokinase 	ENSMUST00000109822.1|Gck|ENSMUSG00000041798.9|glucokinase
mm10_v2_chr4_-_128609981_128610098	0.0318142	Rara	ENSMUST00000141040.1|Zscan20|ENSMUSG00000061894.9|zinc finger and SCAN domains 20 	ENSMUST00000147876.1|Zscan20|ENSMUSG00000061894.9|zinc finger and SCAN domains 20 	ENSMUST00000097877.2|Zscan20|ENSMUSG00000061894.9|zinc finger and SCAN domains 20
mm10_v2_chr8_-_72212837_72212837	0.0315379	Rara	ENSMUST00000098630.3|Cib3|ENSMUSG00000074240.3|calcium and integrin binding family member 3
mm10_v2_chr8_+_106150359_106150417	0.0302125	Rara	ENSMUST00000034377.6|Pla2g15|ENSMUSG00000031903.6|phospholipase A2, group XV
mm10_v2_chr10_+_79910856_79910856	0.029332	Rara	ENSMUST00000181321.1|Gm26602|ENSMUSG00000097854.1|predicted gene, 26602
mm10_v2_chr2_-_91070283_91070417	0.0275836	Rara	ENSMUST00000111436.2|Slc39a13|ENSMUSG00000002105.9|solute carrier family 39 (metal ion transporter), member 13 	ENSMUST00000073575.5|Slc39a13|ENSMUSG00000002105.9|solute carrier family 39 (metal ion transporter), member 13
mm10_v2_chr3_+_79884931_79885090	0.0270194	Rara	ENSMUST00000135021.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr2_+_169633517_169633676	0.0266344	Rara	ENSMUST00000109157.1|Tshz2|ENSMUSG00000047907.10|teashirt zinc finger family member 2
mm10_v2_chr9_-_83146601_83146614	0.0261886	Rara	ENSMUST00000162246.2|Hmgn3|ENSMUSG00000066456.8|high mobility group nucleosomal binding domain 3 	ENSMUST00000161796.2|Hmgn3|ENSMUSG00000066456.8|high mobility group nucleosomal binding domain 3
mm10_v2_chr2_-_91070180_91070249	0.0253075	Rara	ENSMUST00000153367.1|Slc39a13|ENSMUSG00000002105.9|solute carrier family 39 (metal ion transporter), member 13 	ENSMUST00000079976.3|Slc39a13|ENSMUSG00000002105.9|solute carrier family 39 (metal ion transporter), member 13
mm10_v2_chr7_+_45873127_45873187	0.0250633	Rara	ENSMUST00000107718.1|Kdelr1|ENSMUSG00000002778.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1
mm10_v2_chr19_-_8405060_8405111	0.0242007	Rara	ENSMUST00000064507.5|Slc22a30|ENSMUSG00000052562.9|solute carrier family 22, member 30 	ENSMUST00000120540.1|Slc22a30|ENSMUSG00000052562.9|solute carrier family 22, member 30 	ENSMUST00000096269.4|Slc22a30|ENSMUSG00000052562.9|solute carrier family 22, member 30
mm10_v2_chr14_-_30353468_30353535	0.0239165	Rara	ENSMUST00000112249.1|Cacna1d|ENSMUSG00000015968.10|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm10_v2_chr3_+_79884496_79884571	0.023674	Rara	ENSMUST00000118853.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr14_+_58070547_58070547	0.0236043	Rara	ENSMUST00000165526.1|Fgf9|ENSMUSG00000021974.8|fibroblast growth factor 9
mm10_v2_chr14_-_74947865_74947883	0.0235339	Rara	ENSMUST00000088970.5|Lrch1|ENSMUSG00000068015.6|leucine-rich repeats and calponin homology (CH) domain containing 1
mm10_v2_chr2_+_26319741_26319773	0.0227648	Rara	ENSMUST00000066889.6|Gpsm1|ENSMUSG00000026930.9|G-protein signalling modulator 1 (AGS3-like, C. elegans)
mm10_v2_chr14_+_76488436_76488541	0.0226178	Rara	ENSMUST00000101618.2|Tsc22d1|ENSMUSG00000022010.13|TSC22 domain family, member 1
mm10_v2_chr7_+_45872772_45872857	0.0225358	Rara	ENSMUST00000002855.5|Kdelr1|ENSMUSG00000002778.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 	ENSMUST00000107719.1|Kdelr1|ENSMUSG00000002778.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1
mm10_v2_chr6_-_54972603_54972626	0.0222126	Rara	ENSMUST00000060655.8|Nod1|ENSMUSG00000038058.8|nucleotide-binding oligomerization domain containing 1
mm10_v2_chr4_+_150853919_150854050	0.0199725	Rara	ENSMUST00000073600.2|Errfi1|ENSMUSG00000028967.4|ERBB receptor feedback inhibitor 1
mm10_v2_chr3_+_96104498_96104571	0.0164947	Rara	ENSMUST00000132980.1|Otud7b|ENSMUSG00000038495.8|OTU domain containing 7B 	ENSMUST00000138206.1|Otud7b|ENSMUSG00000038495.8|OTU domain containing 7B 	ENSMUST00000090785.2|Otud7b|ENSMUSG00000038495.8|OTU domain containing 7B 	ENSMUST00000035519.5|Otud7b|ENSMUSG00000038495.8|OTU domain containing 7B
mm10_v2_chrX_+_74254782_74254872	0.0155418	Rara	ENSMUST00000119197.1|Emd|ENSMUSG00000001964.8|emerin 	ENSMUST00000088313.4|Emd|ENSMUSG00000001964.8|emerin
mm10_v2_chr8_-_94876269_94876321	0.0153593	Rara	ENSMUST00000046461.7|Dok4|ENSMUSG00000040631.7|docking protein 4
mm10_v2_chr5_+_53267103_53267127	0.0136082	Rara	ENSMUST00000121042.1|Smim20|ENSMUSG00000061461.6|small integral membrane protein 20
mm10_v2_chr15_-_101786458_101786528	0.0134788	Rara	ENSMUST00000071104.4|Krt72|ENSMUSG00000056605.6|keratin 72
mm10_v2_chr5_-_105239533_105239533	0.0131475	Rara	ENSMUST00000065588.6|Gbp10|ENSMUSG00000054588.8|guanylate-binding protein 10
mm10_v2_chr2_-_34754364_34754561	0.0112058	Rara	ENSMUST00000142436.1|Gapvd1|ENSMUSG00000026867.12|GTPase activating protein and VPS9 domains 1 	ENSMUST00000113099.3|Gapvd1|ENSMUSG00000026867.12|GTPase activating protein and VPS9 domains 1 	ENSMUST00000028224.8|Gapvd1|ENSMUSG00000026867.12|GTPase activating protein and VPS9 domains 1
mm10_v2_chr17_+_24038144_24038228	0.0103467	Rara	ENSMUST00000059482.5|Prss27|ENSMUSG00000050762.5|protease, serine, 27
mm10_v2_chr2_-_181365306_181365404	0.00976069	Rara	ENSMUST00000108808.1|Arfrp1|ENSMUSG00000038671.9|ADP-ribosylation factor related protein 1 	ENSMUST00000170190.1|Arfrp1|ENSMUSG00000038671.9|ADP-ribosylation factor related protein 1 	ENSMUST00000127988.1|Arfrp1|ENSMUSG00000038671.9|ADP-ribosylation factor related protein 1
mm10_v2_chr1_-_163403627_163403679	0.00736271	Rara	ENSMUST00000045138.4|Gorab|ENSMUSG00000040124.4|golgin, RAB6-interacting
mm10_v2_chr3_-_36475688_36475843	0.00654891	Rara	ENSMUST00000029266.8|Anxa5|ENSMUSG00000027712.8|annexin A5
mm10_v2_chr4_+_41348996_41349064	0.00646344	Rara	ENSMUST00000072866.5|Ubap1|ENSMUSG00000028437.8|ubiquitin-associated protein 1 	ENSMUST00000108060.3|Ubap1|ENSMUSG00000028437.8|ubiquitin-associated protein 1
mm10_v2_chr3_-_75556759_75556871	0.00642844	Rara	ENSMUST00000162138.1|Pdcd10|ENSMUSG00000027835.5|programmed cell death 10 	ENSMUST00000029424.5|Pdcd10|ENSMUSG00000027835.5|programmed cell death 10 	ENSMUST00000161137.1|Pdcd10|ENSMUSG00000027835.5|programmed cell death 10
mm10_v2_chr9_-_43105718_43105793	0.00618281	Rara	ENSMUST00000165665.1|Arhgef12|ENSMUSG00000059495.7|Rho guanine nucleotide exchange factor (GEF) 12
mm10_v2_chr7_-_17056669_17056696	0.00486202	Rara	ENSMUST00000037762.4|Hif3a|ENSMUSG00000004328.9|hypoxia inducible factor 3, alpha subunit
mm10_v2_chr12_-_108893197_108893215	0.00479942	Rara	ENSMUST00000161154.1|Wars|ENSMUSG00000021266.10|tryptophanyl-tRNA synthetase 	ENSMUST00000161410.1|Wars|ENSMUSG00000021266.10|tryptophanyl-tRNA synthetase
mm10_v2_chr1_-_36369173_36369186	0.00478632	Rara	ENSMUST00000010597.3|Kansl3|ENSMUSG00000010453.6|KAT8 regulatory NSL complex subunit 3
mm10_v2_chr3_+_152210458_152210534	0.00473255	Rara	ENSMUST00000166984.1|Fubp1|ENSMUSG00000028034.9|far upstream element (FUSE) binding protein 1 	ENSMUST00000106121.1|Fubp1|ENSMUSG00000028034.9|far upstream element (FUSE) binding protein 1
mm10_v2_chr5_+_138255608_138255725	0.00472805	Rara	ENSMUST00000062067.6|Lamtor4|ENSMUSG00000050552.7|late endosomal/lysosomal adaptor, MAPK and MTOR activator 4
mm10_v2_chr2_+_120977017_120977107	0.00426767	Rara	ENSMUST00000067582.7|Tmem62|ENSMUSG00000054484.8|transmembrane protein 62
mm10_v2_chr6_-_124542281_124542359	0.00229964	Rara	ENSMUST00000159463.1|C1s|ENSMUSG00000038521.11|complement component 1, s subcomponent 	ENSMUST00000162844.1|C1s|ENSMUSG00000038521.11|complement component 1, s subcomponent 	ENSMUST00000160505.1|C1s|ENSMUSG00000038521.11|complement component 1, s subcomponent 	ENSMUST00000162443.1|C1s|ENSMUSG00000038521.11|complement component 1, s subcomponent
mm10_v2_chr9_+_54586450_54586512	0.00149066	Rara	ENSMUST00000167866.1|Idh3a|ENSMUSG00000032279.10|isocitrate dehydrogenase 3 (NAD+) alpha
mm10_v2_chr17_-_32388885_32389116	0.00133913	Rara	ENSMUST00000087703.5|Wiz|ENSMUSG00000024050.9|widely-interspaced zinc finger motifs 	ENSMUST00000170603.1|Wiz|ENSMUSG00000024050.9|widely-interspaced zinc finger motifs
mm10_v2_chr2_-_5845164_5845164	0.000759026	Rara	ENSMUST00000043864.3|Cdc123|ENSMUSG00000039128.7|cell division cycle 123
mm10_v2_chr18_+_36528145_36528157	0.000652386	Rara	ENSMUST00000074298.6|Slc4a9|ENSMUSG00000024485.9|solute carrier family 4, sodium bicarbonate cotransporter, member 9 	ENSMUST00000115694.2|Slc4a9|ENSMUSG00000024485.9|solute carrier family 4, sodium bicarbonate cotransporter, member 9
