mm10_v2_chr19_-_10457447_10457557	9.02386	Rfx3_Rfx1_Rfx4	ENSMUST00000171400.2|Lrrc10b|ENSMUSG00000090291.2|leucine rich repeat containing 10B
mm10_v2_chr17_+_24696234_24696320	5.71946	Rfx3_Rfx1_Rfx4	ENSMUST00000019464.7|Noxo1|ENSMUSG00000019320.7|NADPH oxidase organizer 1
mm10_v2_chr9_+_59589288_59589353	5.5659	Rfx3_Rfx1_Rfx4	ENSMUST00000121266.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6 	ENSMUST00000118164.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6
mm10_v2_chr1_+_172521044_172521181	5.54364	Rfx3_Rfx1_Rfx4	ENSMUST00000085894.5|Ccdc19|ENSMUSG00000026546.10|coiled-coil domain containing 19 	ENSMUST00000161140.1|Ccdc19|ENSMUSG00000026546.10|coiled-coil domain containing 19 	ENSMUST00000162988.1|Ccdc19|ENSMUSG00000026546.10|coiled-coil domain containing 19
mm10_v2_chr8_+_123235086_123235096	5.50668	Rfx3_Rfx1_Rfx4	ENSMUST00000181432.1|4933417D19Rik|ENSMUSG00000097637.1|RIKEN cDNA 4933417D19 gene
mm10_v2_chr10_+_75037066_75037100	4.99974	Rfx3_Rfx1_Rfx4	ENSMUST00000147802.1|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family 	ENSMUST00000020391.5|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family
mm10_v2_chrX_-_74645635_74645635	4.9665	Rfx3_Rfx1_Rfx4	ENSMUST00000114119.1|Gm5640|ENSMUSG00000079534.1|predicted gene 5640
mm10_v2_chr8_-_22125030_22125073	4.81756	Rfx3_Rfx1_Rfx4	ENSMUST00000169834.1|Nek5|ENSMUSG00000037738.9|NIMA (never in mitosis gene a)-related expressed kinase 5
mm10_v2_chr13_+_24845122_24845186	4.81437	Rfx3_Rfx1_Rfx4	ENSMUST00000006893.8|D130043K22Rik|ENSMUSG00000006711.9|RIKEN cDNA D130043K22 gene
mm10_v2_chrX_+_73123068_73123068	4.79987	Rfx3_Rfx1_Rfx4	ENSMUST00000179117.1|Gm14685|ENSMUSG00000067771.3|predicted gene 14685
mm10_v2_chr1_-_60043087_60043175	4.61279	Rfx3_Rfx1_Rfx4	ENSMUST00000027172.6|Ica1l|ENSMUSG00000026018.6|islet cell autoantigen 1-like
mm10_v2_chr11_+_87760533_87760587	4.57221	Rfx3_Rfx1_Rfx4	ENSMUST00000039627.5|Bzrap1|ENSMUSG00000034156.10|benzodiazepine receptor associated protein 1 	ENSMUST00000100644.3|Bzrap1|ENSMUSG00000034156.10|benzodiazepine receptor associated protein 1
mm10_v2_chr7_-_4546567_4546567	4.56102	Rfx3_Rfx1_Rfx4	ENSMUST00000065957.5|Syt5|ENSMUSG00000004961.6|synaptotagmin V
mm10_v2_chr7_-_140082489_140082556	4.53516	Rfx3_Rfx1_Rfx4	ENSMUST00000026541.7|Caly|ENSMUSG00000025468.8|calcyon neuron-specific vesicular protein
mm10_v2_chr5_+_124598749_124598798	4.2682	Rfx3_Rfx1_Rfx4	ENSMUST00000130912.1|Tctn2|ENSMUSG00000029386.9|tectonic family member 2 	ENSMUST00000100706.3|Tctn2|ENSMUSG00000029386.9|tectonic family member 2
mm10_v2_chr16_+_23429133_23429133	4.25241	Rfx3_Rfx1_Rfx4	ENSMUST00000038730.6|Rtp1|ENSMUSG00000033383.6|receptor transporter protein 1
mm10_v2_chr10_-_77259223_77259223	4.19618	Rfx3_Rfx1_Rfx4	ENSMUST00000105408.3|Gm10941|ENSMUSG00000078444.3|predicted gene 10941
mm10_v2_chrX_+_74837196_74837196	4.15201	Rfx3_Rfx1_Rfx4	ENSMUST00000114116.1|Gm5936|ENSMUSG00000079531.1|predicted gene 5936
mm10_v2_chr7_-_140082246_140082301	3.71977	Rfx3_Rfx1_Rfx4	ENSMUST00000166758.2|Caly|ENSMUSG00000025468.8|calcyon neuron-specific vesicular protein
mm10_v2_chr6_-_124779686_124779742	3.61983	Rfx3_Rfx1_Rfx4	ENSMUST00000147669.1|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000128697.1|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000032218.3|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000112475.2|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23
mm10_v2_chr10_+_80295930_80296003	3.60865	Rfx3_Rfx1_Rfx4	ENSMUST00000105359.1|Apc2|ENSMUSG00000020135.7|adenomatosis polyposis coli 2
mm10_v2_chr16_+_96235801_96235801	3.58332	Rfx3_Rfx1_Rfx4	ENSMUST00000113800.2|B3galt5|ENSMUSG00000074892.3|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5
mm10_v2_chr2_+_181219998_181220055	3.48256	Rfx3_Rfx1_Rfx4	ENSMUST00000050026.6|BC051628|ENSMUSG00000047841.8|cDNA sequence BC051628 	ENSMUST00000108835.1|BC051628|ENSMUSG00000047841.8|cDNA sequence BC051628
mm10_v2_chr12_-_84148449_84148499	3.38702	Rfx3_Rfx1_Rfx4	ENSMUST00000061425.2|Pnma1|ENSMUSG00000054383.2|paraneoplastic antigen MA1
mm10_v2_chr10_+_75037291_75037332	3.38099	Rfx3_Rfx1_Rfx4	ENSMUST00000139384.1|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family
mm10_v2_chr17_-_35979679_35979831	3.37967	Rfx3_Rfx1_Rfx4	ENSMUST00000173724.1|Prr3|ENSMUSG00000038500.9|proline-rich polypeptide 3 	ENSMUST00000172900.1|Prr3|ENSMUSG00000038500.9|proline-rich polypeptide 3 	ENSMUST00000174849.1|Prr3|ENSMUSG00000038500.9|proline-rich polypeptide 3
mm10_v2_chr8_+_22808275_22808275	3.35134	Rfx3_Rfx1_Rfx4	ENSMUST00000068068.4|1700041G16Rik|ENSMUSG00000054822.4|RIKEN cDNA 1700041G16 gene
mm10_v2_chr11_-_4160286_4160305	3.23859	Rfx3_Rfx1_Rfx4	ENSMUST00000093381.4|Ccdc157|ENSMUSG00000051427.8|coiled-coil domain containing 157 	ENSMUST00000101626.2|Ccdc157|ENSMUSG00000051427.8|coiled-coil domain containing 157
mm10_v2_chr9_+_46012810_46012821	3.20196	Rfx3_Rfx1_Rfx4	ENSMUST00000126865.1|Sik3|ENSMUSG00000034135.8|SIK family kinase 3
mm10_v2_chr16_-_3908596_3908623	3.08533	Rfx3_Rfx1_Rfx4	ENSMUST00000123235.2|1700037C18Rik|ENSMUSG00000005983.9|RIKEN cDNA 1700037C18 gene
mm10_v2_chr9_+_110476985_110476999	3.02058	Rfx3_Rfx1_Rfx4	ENSMUST00000084948.4|Kif9|ENSMUSG00000032489.11|kinesin family member 9 	ENSMUST00000061155.6|Kif9|ENSMUSG00000032489.11|kinesin family member 9 	ENSMUST00000140686.1|Kif9|ENSMUSG00000032489.11|kinesin family member 9 	ENSMUST00000084952.5|Kif9|ENSMUSG00000032489.11|kinesin family member 9
mm10_v2_chr8_-_22805596_22805654	3.00343	Rfx3_Rfx1_Rfx4	ENSMUST00000163739.1|Ap3m2|ENSMUSG00000031539.5|adaptor-related protein complex 3, mu 2 subunit
mm10_v2_chr11_+_9048575_9048630	2.97611	Rfx3_Rfx1_Rfx4	ENSMUST00000043285.4|Gm11992|ENSMUSG00000040978.4|predicted gene 11992
mm10_v2_chr7_+_133776857_133776942	2.93423	Rfx3_Rfx1_Rfx4	ENSMUST00000065359.5|Fank1|ENSMUSG00000053111.6|fibronectin type 3 and ankyrin repeat domains 1 	ENSMUST00000151031.1|Fank1|ENSMUSG00000053111.6|fibronectin type 3 and ankyrin repeat domains 1 	ENSMUST00000121560.1|Fank1|ENSMUSG00000053111.6|fibronectin type 3 and ankyrin repeat domains 1
mm10_v2_chr9_+_119102463_119102530	2.91845	Rfx3_Rfx1_Rfx4	ENSMUST00000140326.1|Dlec1|ENSMUSG00000038060.9|deleted in lung and esophageal cancer 1 	ENSMUST00000165231.1|Dlec1|ENSMUSG00000038060.9|deleted in lung and esophageal cancer 1
mm10_v2_chr5_+_149439706_149439721	2.84587	Rfx3_Rfx1_Rfx4	ENSMUST00000031667.4|Tex26|ENSMUSG00000029660.7|testis expressed 26
mm10_v2_chr17_-_46144156_46144218	2.83876	Rfx3_Rfx1_Rfx4	ENSMUST00000024762.2|Rsph9|ENSMUSG00000023966.2|radial spoke head 9 homolog (Chlamydomonas)
mm10_v2_chr1_+_59119822_59119861	2.82795	Rfx3_Rfx1_Rfx4	ENSMUST00000180570.1|G730003C15Rik|ENSMUSG00000097573.1|RIKEN cDNA G730003C15 gene
mm10_v2_chr15_-_79658889_79658956	2.81895	Rfx3_Rfx1_Rfx4	ENSMUST00000109648.2|Fam227a|ENSMUSG00000042564.6|family with sequence similarity 227, member A 	ENSMUST00000046816.6|Fam227a|ENSMUSG00000042564.6|family with sequence similarity 227, member A
mm10_v2_chr17_+_85090647_85090726	2.81503	Rfx3_Rfx1_Rfx4	ENSMUST00000095188.5|Camkmt|ENSMUSG00000071037.5|calmodulin-lysine N-methyltransferase
mm10_v2_chrX_+_48623737_48623790	2.77489	Rfx3_Rfx1_Rfx4	ENSMUST00000114936.1|Slc25a14|ENSMUSG00000031105.10|solute carrier family 25 (mitochondrial carrier, brain), member 14
mm10_v2_chr1_-_160077918_160077944	2.77055	Rfx3_Rfx1_Rfx4	ENSMUST00000028061.3|4930562F07Rik|ENSMUSG00000026729.4|RIKEN cDNA 4930562F07 gene
mm10_v2_chr4_-_119415494_119415522	2.76549	Rfx3_Rfx1_Rfx4	ENSMUST00000063642.2|Ccdc30|ENSMUSG00000028637.9|coiled-coil domain containing 30
mm10_v2_chrX_+_7919816_7919905	2.76034	Rfx3_Rfx1_Rfx4	ENSMUST00000041096.3|Pcsk1n|ENSMUSG00000039278.10|proprotein convertase subtilisin/kexin type 1 inhibitor
mm10_v2_chr2_-_38287174_38287195	2.74365	Rfx3_Rfx1_Rfx4	ENSMUST00000130472.1|Dennd1a|ENSMUSG00000035392.11|DENN/MADD domain containing 1A
mm10_v2_chr15_-_79062866_79062941	2.71929	Rfx3_Rfx1_Rfx4	ENSMUST00000151889.1|Ankrd54|ENSMUSG00000033055.4|ankyrin repeat domain 54 	ENSMUST00000040676.4|Ankrd54|ENSMUSG00000033055.4|ankyrin repeat domain 54
mm10_v2_chr4_-_142015056_142015069	2.70931	Rfx3_Rfx1_Rfx4	ENSMUST00000105780.1|Fhad1|ENSMUSG00000051435.5|forkhead-associated (FHA) phosphopeptide binding domain 1
mm10_v2_chr6_+_56017489_56017517	2.67439	Rfx3_Rfx1_Rfx4	ENSMUST00000052827.4|Ppp1r17|ENSMUSG00000002930.5|protein phosphatase 1, regulatory subunit 17
mm10_v2_chr15_-_66500857_66500910	2.58082	Rfx3_Rfx1_Rfx4	ENSMUST00000023006.6|Lrrc6|ENSMUSG00000022375.6|leucine rich repeat containing 6 (testis)
mm10_v2_chr4_+_43669266_43669287	2.56319	Rfx3_Rfx1_Rfx4	ENSMUST00000107864.1|Tmem8b|ENSMUSG00000078716.3|transmembrane protein 8B
mm10_v2_chr7_+_80246529_80246579	2.5226	Rfx3_Rfx1_Rfx4	ENSMUST00000107381.1|Ttll13|ENSMUSG00000045467.7|tubulin tyrosine ligase-like family, member 13
mm10_v2_chr4_+_110397661_110397708	2.47931	Rfx3_Rfx1_Rfx4	ENSMUST00000106589.2|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4 	ENSMUST00000106587.2|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4 	ENSMUST00000106591.1|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4 	ENSMUST00000106592.1|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4
mm10_v2_chr10_+_34297421_34297513	2.4585	Rfx3_Rfx1_Rfx4	ENSMUST00000047935.6|Tspyl4|ENSMUSG00000039485.6|TSPY-like 4
mm10_v2_chr12_+_21417872_21417911	2.38524	Rfx3_Rfx1_Rfx4	ENSMUST00000180671.1|Gm4419|ENSMUSG00000097055.1|predicted gene 4419
mm10_v2_chr4_-_43653560_43653594	2.36315	Rfx3_Rfx1_Rfx4	ENSMUST00000107870.2|Spag8|ENSMUSG00000066196.5|sperm associated antigen 8
mm10_v2_chr6_-_115838412_115838412	2.34405	Rfx3_Rfx1_Rfx4	ENSMUST00000032468.5|Efcab12|ENSMUSG00000030321.9|EF-hand calcium binding domain 12 	ENSMUST00000184428.1|Efcab12|ENSMUSG00000030321.9|EF-hand calcium binding domain 12
mm10_v2_chr4_-_40722307_40722398	2.33781	Rfx3_Rfx1_Rfx4	ENSMUST00000181475.1|Gm6297|ENSMUSG00000097123.1|predicted gene 6297
mm10_v2_chr5_-_103211251_103211334	2.33572	Rfx3_Rfx1_Rfx4	ENSMUST00000060871.5|Mapk10|ENSMUSG00000046709.10|mitogen-activated protein kinase 10 	ENSMUST00000112846.1|Mapk10|ENSMUSG00000046709.10|mitogen-activated protein kinase 10 	ENSMUST00000170792.1|Mapk10|ENSMUSG00000046709.10|mitogen-activated protein kinase 10 	ENSMUST00000112847.2|Mapk10|ENSMUSG00000046709.10|mitogen-activated protein kinase 10
mm10_v2_chr4_-_141933080_141933095	2.33281	Rfx3_Rfx1_Rfx4	ENSMUST00000036701.7|Fhad1|ENSMUSG00000051435.5|forkhead-associated (FHA) phosphopeptide binding domain 1
mm10_v2_chr9_-_60688118_60688184	2.2979	Rfx3_Rfx1_Rfx4	ENSMUST00000114034.2|Lrrc49|ENSMUSG00000047766.9|leucine rich repeat containing 49 	ENSMUST00000065603.5|Lrrc49|ENSMUSG00000047766.9|leucine rich repeat containing 49
mm10_v2_chr7_+_80246375_80246429	2.29774	Rfx3_Rfx1_Rfx4	ENSMUST00000058266.6|Ttll13|ENSMUSG00000045467.7|tubulin tyrosine ligase-like family, member 13
mm10_v2_chr9_-_98563580_98563620	2.28706	Rfx3_Rfx1_Rfx4	ENSMUST00000058992.2|4930579K19Rik|ENSMUSG00000051074.2|RIKEN cDNA 4930579K19 gene
mm10_v2_chr16_+_14906622_14906680	2.26223	Rfx3_Rfx1_Rfx4	ENSMUST00000090277.1|Efcab1|ENSMUSG00000068617.4|EF hand calcium binding domain 1
mm10_v2_chr9_+_108049254_108049339	2.21974	Rfx3_Rfx1_Rfx4	ENSMUST00000112295.2|Gmppb|ENSMUSG00000070284.4|GDP-mannose pyrophosphorylase B 	ENSMUST00000047947.7|Gmppb|ENSMUSG00000070284.4|GDP-mannose pyrophosphorylase B
mm10_v2_chr11_-_114795888_114795903	2.20088	Rfx3_Rfx1_Rfx4	ENSMUST00000000206.3|Btbd17|ENSMUSG00000000202.3|BTB (POZ) domain containing 17
mm10_v2_chrX_+_36195938_36195946	2.19793	Rfx3_Rfx1_Rfx4	ENSMUST00000048067.3|Zcchc12|ENSMUSG00000036699.6|zinc finger, CCHC domain containing 12
mm10_v2_chr1_-_156674290_156674356	2.17614	Rfx3_Rfx1_Rfx4	ENSMUST00000079625.4|Tor3a|ENSMUSG00000060519.5|torsin family 3, member A
mm10_v2_chrX_+_36195904_36195932	2.15779	Rfx3_Rfx1_Rfx4	ENSMUST00000115258.2|Zcchc12|ENSMUSG00000036699.6|zinc finger, CCHC domain containing 12
mm10_v2_chr9_+_72985504_72985567	2.15371	Rfx3_Rfx1_Rfx4	ENSMUST00000156879.1|Ccpg1|ENSMUSG00000034563.10|cell cycle progression 1
mm10_v2_chr7_+_139213239_139213304	2.12691	Rfx3_Rfx1_Rfx4	ENSMUST00000106104.1|Lrrc27|ENSMUSG00000015980.8|leucine rich repeat containing 27
mm10_v2_chrX_+_36195950_36195959	2.11957	Rfx3_Rfx1_Rfx4	ENSMUST00000115257.1|Zcchc12|ENSMUSG00000036699.6|zinc finger, CCHC domain containing 12
mm10_v2_chr9_+_59578192_59578337	2.11602	Rfx3_Rfx1_Rfx4	ENSMUST00000118549.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6 	ENSMUST00000034840.3|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6
mm10_v2_chr8_+_123212857_123212911	2.11121	Rfx3_Rfx1_Rfx4	ENSMUST00000060133.6|Spata33|ENSMUSG00000048478.6|spermatogenesis associated 33
mm10_v2_chr9_+_72985410_72985429	2.10379	Rfx3_Rfx1_Rfx4	ENSMUST00000037977.8|Ccpg1|ENSMUSG00000034563.10|cell cycle progression 1
mm10_v2_chrX_+_36195968_36195993	2.10218	Rfx3_Rfx1_Rfx4	ENSMUST00000115256.1|Zcchc12|ENSMUSG00000036699.6|zinc finger, CCHC domain containing 12
mm10_v2_chr9_-_121277160_121277217	2.09778	Rfx3_Rfx1_Rfx4	ENSMUST00000051479.6|Ulk4|ENSMUSG00000040936.8|unc-51-like kinase 4 	ENSMUST00000171923.1|Ulk4|ENSMUSG00000040936.8|unc-51-like kinase 4
mm10_v2_chr4_-_138725262_138725267	2.09519	Rfx3_Rfx1_Rfx4	ENSMUST00000105811.2|Ubxn10|ENSMUSG00000043621.7|UBX domain protein 10
mm10_v2_chr1_-_84696182_84696221	2.08988	Rfx3_Rfx1_Rfx4	ENSMUST00000049126.6|Dner|ENSMUSG00000036766.6|delta/notch-like EGF-related receptor
mm10_v2_chr7_+_139212974_139212993	2.0852	Rfx3_Rfx1_Rfx4	ENSMUST00000016124.8|Lrrc27|ENSMUSG00000015980.8|leucine rich repeat containing 27
mm10_v2_chr7_-_31051431_31051488	2.08001	Rfx3_Rfx1_Rfx4	ENSMUST00000073892.4|Fxyd7|ENSMUSG00000036578.6|FXYD domain-containing ion transport regulator 7
mm10_v2_chr17_-_85090204_85090275	2.07768	Rfx3_Rfx1_Rfx4	ENSMUST00000072406.3|Prepl|ENSMUSG00000024127.8|prolyl endopeptidase-like 	ENSMUST00000171795.1|Prepl|ENSMUSG00000024127.8|prolyl endopeptidase-like
mm10_v2_chr7_-_127588595_127588595	2.04291	Rfx3_Rfx1_Rfx4	ENSMUST00000072155.3|Gm166|ENSMUSG00000057176.3|predicted gene 166
mm10_v2_chr7_+_16944645_16944720	2.03387	Rfx3_Rfx1_Rfx4	ENSMUST00000094807.5|Pnmal2|ENSMUSG00000070802.5|PNMA-like 2
mm10_v2_chr4_+_152338887_152338967	2.02649	Rfx3_Rfx1_Rfx4	ENSMUST00000005175.4|Chd5|ENSMUSG00000005045.10|chromodomain helicase DNA binding protein 5
mm10_v2_chr9_-_106685653_106685674	2.01592	Rfx3_Rfx1_Rfx4	ENSMUST00000163441.1|Tex264|ENSMUSG00000040813.9|testis expressed gene 264
mm10_v2_chr1_+_24678536_24678609	2.01411	Rfx3_Rfx1_Rfx4	ENSMUST00000095062.3|Lmbrd1|ENSMUSG00000073725.2|LMBR1 domain containing 1
mm10_v2_chr16_+_36041184_36041197	2.00979	Rfx3_Rfx1_Rfx4	ENSMUST00000042203.8|Wdr5b|ENSMUSG00000034379.8|WD repeat domain 5B
mm10_v2_chr10_-_40025253_40025286	1.99627	Rfx3_Rfx1_Rfx4	ENSMUST00000163705.2|AI317395|ENSMUSG00000038522.6|expressed sequence AI317395
mm10_v2_chr12_+_113140198_113140257	1.9942	Rfx3_Rfx1_Rfx4	ENSMUST00000084882.4|Crip2|ENSMUSG00000006356.6|cysteine rich protein 2
mm10_v2_chr17_+_80290206_80290279	1.97087	Rfx3_Rfx1_Rfx4	ENSMUST00000061703.9|Morn2|ENSMUSG00000045257.9|MORN repeat containing 2
mm10_v2_chr7_+_139894696_139894854	1.92597	Rfx3_Rfx1_Rfx4	ENSMUST00000151421.1|Kndc1|ENSMUSG00000066129.8|kinase non-catalytic C-lobe domain (KIND) containing 1 	ENSMUST00000053445.9|Kndc1|ENSMUSG00000066129.8|kinase non-catalytic C-lobe domain (KIND) containing 1 	ENSMUST00000121839.1|Kndc1|ENSMUSG00000066129.8|kinase non-catalytic C-lobe domain (KIND) containing 1
mm10_v2_chr7_+_139213003_139213016	1.90922	Rfx3_Rfx1_Rfx4	ENSMUST00000156768.1|Lrrc27|ENSMUSG00000015980.8|leucine rich repeat containing 27
mm10_v2_chr11_+_106374820_106374832	1.89675	Rfx3_Rfx1_Rfx4	ENSMUST00000106816.1|2310007L24Rik|ENSMUSG00000009210.4|RIKEN cDNA 2310007L24 gene
mm10_v2_chr4_+_110397764_110397808	1.88752	Rfx3_Rfx1_Rfx4	ENSMUST00000097920.2|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4 	ENSMUST00000080744.6|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4
mm10_v2_chr17_-_46752170_46752231	1.88351	Rfx3_Rfx1_Rfx4	ENSMUST00000121671.1|Cnpy3|ENSMUSG00000023973.7|canopy 3 homolog (zebrafish) 	ENSMUST00000059844.6|Cnpy3|ENSMUSG00000023973.7|canopy 3 homolog (zebrafish)
mm10_v2_chr13_-_3945349_3945349	1.87934	Rfx3_Rfx1_Rfx4	ENSMUST00000058610.7|Ucn3|ENSMUSG00000044988.7|urocortin 3
mm10_v2_chr9_+_72985568_72985642	1.87054	Rfx3_Rfx1_Rfx4	ENSMUST00000150826.2|Ccpg1|ENSMUSG00000034563.10|cell cycle progression 1 	ENSMUST00000085350.4|Ccpg1|ENSMUSG00000034563.10|cell cycle progression 1 	ENSMUST00000140675.1|Ccpg1|ENSMUSG00000034563.10|cell cycle progression 1
mm10_v2_chr6_+_34780836_34780905	1.86428	Rfx3_Rfx1_Rfx4	ENSMUST00000115012.1|Agbl3|ENSMUSG00000038836.9|ATP/GTP binding protein-like 3 	ENSMUST00000115014.1|Agbl3|ENSMUSG00000038836.9|ATP/GTP binding protein-like 3 	ENSMUST00000115009.1|Agbl3|ENSMUSG00000038836.9|ATP/GTP binding protein-like 3
mm10_v2_chr6_+_38381469_38381528	1.85907	Rfx3_Rfx1_Rfx4	ENSMUST00000162554.1|Ttc26|ENSMUSG00000056832.8|tetratricopeptide repeat domain 26 	ENSMUST00000161751.1|Ttc26|ENSMUSG00000056832.8|tetratricopeptide repeat domain 26
mm10_v2_chr14_+_31001414_31001464	1.85397	Rfx3_Rfx1_Rfx4	ENSMUST00000022476.7|Glt8d1|ENSMUSG00000021916.9|glycosyltransferase 8 domain containing 1
mm10_v2_chr1_+_74362108_74362156	1.84404	Rfx3_Rfx1_Rfx4	ENSMUST00000097697.1|Gm216|ENSMUSG00000073650.2|predicted gene 216
mm10_v2_chr9_+_109095427_109095453	1.83954	Rfx3_Rfx1_Rfx4	ENSMUST00000072093.6|Plxnb1|ENSMUSG00000053646.7|plexin B1
mm10_v2_chr10_+_77259280_77259348	1.82609	Rfx3_Rfx1_Rfx4	ENSMUST00000020493.7|Pofut2|ENSMUSG00000020260.8|protein O-fucosyltransferase 2
mm10_v2_chr11_-_105944412_105944518	1.8234	Rfx3_Rfx1_Rfx4	ENSMUST00000019734.4|Cyb561|ENSMUSG00000019590.10|cytochrome b-561 	ENSMUST00000184269.1|Cyb561|ENSMUSG00000019590.10|cytochrome b-561 	ENSMUST00000150563.1|Cyb561|ENSMUSG00000019590.10|cytochrome b-561
mm10_v2_chr7_-_31054815_31054853	1.82255	Rfx3_Rfx1_Rfx4	ENSMUST00000071697.4|Fxyd1|ENSMUSG00000036570.8|FXYD domain-containing ion transport regulator 1 	ENSMUST00000108110.3|Fxyd1|ENSMUSG00000036570.8|FXYD domain-containing ion transport regulator 1
mm10_v2_chr8_-_3467617_3467680	1.81597	Rfx3_Rfx1_Rfx4	ENSMUST00000111081.3|Pex11g|ENSMUSG00000069633.6|peroxisomal biogenesis factor 11 gamma 	ENSMUST00000118194.1|Pex11g|ENSMUSG00000069633.6|peroxisomal biogenesis factor 11 gamma 	ENSMUST00000004686.6|Pex11g|ENSMUSG00000069633.6|peroxisomal biogenesis factor 11 gamma
mm10_v2_chr11_-_97766508_97766574	1.81506	Rfx3_Rfx1_Rfx4	ENSMUST00000107579.1|Cwc25|ENSMUSG00000018541.4|CWC25 spliceosome-associated protein homolog (S. cerevisiae) 	ENSMUST00000018685.2|Cwc25|ENSMUSG00000018541.4|CWC25 spliceosome-associated protein homolog (S. cerevisiae)
mm10_v2_chr7_+_3290553_3290586	1.81288	Rfx3_Rfx1_Rfx4	ENSMUST00000096744.5|Myadm|ENSMUSG00000068566.6|myeloid-associated differentiation marker
mm10_v2_chr10_+_41490436_41490483	1.78652	Rfx3_Rfx1_Rfx4	ENSMUST00000105507.3|Ppil6|ENSMUSG00000078451.4|peptidylprolyl isomerase (cyclophilin)-like 6
mm10_v2_chr2_-_164857542_164857652	1.7792	Rfx3_Rfx1_Rfx4	ENSMUST00000109316.1|Pltp|ENSMUSG00000017754.7|phospholipid transfer protein 	ENSMUST00000156255.1|Pltp|ENSMUSG00000017754.7|phospholipid transfer protein 	ENSMUST00000128110.1|Pltp|ENSMUSG00000017754.7|phospholipid transfer protein 	ENSMUST00000109317.3|Pltp|ENSMUSG00000017754.7|phospholipid transfer protein
mm10_v2_chr9_-_22002599_22002640	1.77723	Rfx3_Rfx1_Rfx4	ENSMUST00000115336.2|Ccdc151|ENSMUSG00000039632.6|coiled-coil domain containing 151 	ENSMUST00000044926.5|Ccdc151|ENSMUSG00000039632.6|coiled-coil domain containing 151
mm10_v2_chr7_+_141195047_141195083	1.76097	Rfx3_Rfx1_Rfx4	ENSMUST00000047093.4|Lrrc56|ENSMUSG00000038637.8|leucine rich repeat containing 56
mm10_v2_chr4_-_43653542_43653557	1.75326	Rfx3_Rfx1_Rfx4	ENSMUST00000084646.4|Spag8|ENSMUSG00000066196.5|sperm associated antigen 8
mm10_v2_chr18_+_37264998_37264998	1.74859	Rfx3_Rfx1_Rfx4	ENSMUST00000052366.3|Pcdhb1|ENSMUSG00000051663.3|protocadherin beta 1
mm10_v2_chr2_+_145934800_145934816	1.74398	Rfx3_Rfx1_Rfx4	ENSMUST00000138774.1|4930529M08Rik|ENSMUSG00000037143.11|RIKEN cDNA 4930529M08 gene 	ENSMUST00000152515.1|4930529M08Rik|ENSMUSG00000037143.11|RIKEN cDNA 4930529M08 gene 	ENSMUST00000130168.1|4930529M08Rik|ENSMUSG00000037143.11|RIKEN cDNA 4930529M08 gene 	ENSMUST00000133433.1|4930529M08Rik|ENSMUSG00000037143.11|RIKEN cDNA 4930529M08 gene 	ENSMUST00000118002.1|4930529M08Rik|ENSMUSG00000037143.11|RIKEN cDNA 4930529M08 gene
mm10_v2_chr14_+_31001383_31001407	1.73638	Rfx3_Rfx1_Rfx4	ENSMUST00000168584.1|Glt8d1|ENSMUSG00000021916.9|glycosyltransferase 8 domain containing 1
mm10_v2_chr11_+_119229092_119229131	1.72678	Rfx3_Rfx1_Rfx4	ENSMUST00000053440.7|Ccdc40|ENSMUSG00000039963.12|coiled-coil domain containing 40
mm10_v2_chr7_+_80186835_80186904	1.72462	Rfx3_Rfx1_Rfx4	ENSMUST00000107383.1|Sema4b|ENSMUSG00000030539.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 	ENSMUST00000032754.7|Sema4b|ENSMUSG00000030539.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm10_v2_chr16_-_36874806_36874862	1.7128	Rfx3_Rfx1_Rfx4	ENSMUST00000075946.5|Eaf2|ENSMUSG00000022838.7|ELL associated factor 2
mm10_v2_chr11_-_31824518_31824535	1.71086	Rfx3_Rfx1_Rfx4	ENSMUST00000134944.1|D630024D03Rik|ENSMUSG00000085772.1|RIKEN cDNA D630024D03 gene
mm10_v2_chr9_-_26806384_26806468	1.70926	Rfx3_Rfx1_Rfx4	ENSMUST00000162702.1|Glb1l2|ENSMUSG00000036395.8|galactosidase, beta 1-like 2 	ENSMUST00000040398.7|Glb1l2|ENSMUSG00000036395.8|galactosidase, beta 1-like 2 	ENSMUST00000066560.6|Glb1l2|ENSMUSG00000036395.8|galactosidase, beta 1-like 2
mm10_v2_chr9_-_106685892_106685961	1.70538	Rfx3_Rfx1_Rfx4	ENSMUST00000169068.1|Tex264|ENSMUSG00000040813.9|testis expressed gene 264 	ENSMUST00000046735.4|Tex264|ENSMUSG00000040813.9|testis expressed gene 264
mm10_v2_chr12_-_84361802_84361838	1.69393	Rfx3_Rfx1_Rfx4	ENSMUST00000021659.1|Fam161b|ENSMUSG00000021234.3|family with sequence similarity 161, member B 	ENSMUST00000065536.2|Fam161b|ENSMUSG00000021234.3|family with sequence similarity 161, member B
mm10_v2_chr12_+_69963452_69963474	1.69319	Rfx3_Rfx1_Rfx4	ENSMUST00000110560.1|Gm3086|ENSMUSG00000079076.1|predicted gene 3086
mm10_v2_chr6_+_34780412_34780467	1.6924	Rfx3_Rfx1_Rfx4	ENSMUST00000115016.1|Agbl3|ENSMUSG00000038836.9|ATP/GTP binding protein-like 3 	ENSMUST00000115017.1|Agbl3|ENSMUSG00000038836.9|ATP/GTP binding protein-like 3
mm10_v2_chr4_+_99829437_99829500	1.67679	Rfx3_Rfx1_Rfx4	ENSMUST00000124547.1|Efcab7|ENSMUSG00000073791.5|EF-hand calcium binding domain 7 	ENSMUST00000106994.1|Efcab7|ENSMUSG00000073791.5|EF-hand calcium binding domain 7
mm10_v2_chr4_+_111719975_111720047	1.67303	Rfx3_Rfx1_Rfx4	ENSMUST00000038868.7|Spata6|ENSMUSG00000034401.10|spermatogenesis associated 6 	ENSMUST00000070513.6|Spata6|ENSMUSG00000034401.10|spermatogenesis associated 6 	ENSMUST00000153746.1|Spata6|ENSMUSG00000034401.10|spermatogenesis associated 6
mm10_v2_chr17_+_35979851_35979924	1.66901	Rfx3_Rfx1_Rfx4	ENSMUST00000087200.3|Gnl1|ENSMUSG00000024429.9|guanine nucleotide binding protein-like 1
mm10_v2_chr9_+_46012822_46013000	1.66605	Rfx3_Rfx1_Rfx4	ENSMUST00000120463.2|Sik3|ENSMUSG00000034135.8|SIK family kinase 3 	ENSMUST00000120247.1|Sik3|ENSMUSG00000034135.8|SIK family kinase 3
mm10_v2_chr11_+_102145530_102145549	1.6627	Rfx3_Rfx1_Rfx4	ENSMUST00000055409.5|Nags|ENSMUSG00000048217.5|N-acetylglutamate synthase
mm10_v2_chr15_-_84557776_84557875	1.65161	Rfx3_Rfx1_Rfx4	ENSMUST00000069476.4|Ldoc1l|ENSMUSG00000055745.4|leucine zipper, down-regulated in cancer 1-like
mm10_v2_chr9_+_72958785_72958850	1.64695	Rfx3_Rfx1_Rfx4	ENSMUST00000098567.2|Dyx1c1|ENSMUSG00000092192.1|dyslexia susceptibility 1 candidate 1 homolog (human) 	ENSMUST00000034734.8|Dyx1c1|ENSMUSG00000092192.1|dyslexia susceptibility 1 candidate 1 homolog (human)
mm10_v2_chr2_-_164857671_164857711	1.63937	Rfx3_Rfx1_Rfx4	ENSMUST00000059954.7|Pltp|ENSMUSG00000017754.7|phospholipid transfer protein
mm10_v2_chr7_+_44748584_44748634	1.63467	Rfx3_Rfx1_Rfx4	ENSMUST00000171821.1|Vrk3|ENSMUSG00000002205.9|vaccinia related kinase 3
mm10_v2_chr9_-_51102062_51102085	1.63208	Rfx3_Rfx1_Rfx4	ENSMUST00000170947.1|4833427G06Rik|ENSMUSG00000032057.8|RIKEN cDNA 4833427G06 gene
mm10_v2_chr3_-_155093346_155093385	1.62294	Rfx3_Rfx1_Rfx4	ENSMUST00000066568.4|Fpgt|ENSMUSG00000053870.6|fucose-1-phosphate guanylyltransferase
mm10_v2_chr17_+_34836987_34837049	1.60579	Rfx3_Rfx1_Rfx4	ENSMUST00000173874.1|Dxo|ENSMUSG00000040482.9|decapping exoribonuclease 	ENSMUST00000046244.8|Dxo|ENSMUSG00000040482.9|decapping exoribonuclease 	ENSMUST00000180043.1|Dxo|ENSMUSG00000040482.9|decapping exoribonuclease
mm10_v2_chr11_-_105944128_105944223	1.59922	Rfx3_Rfx1_Rfx4	ENSMUST00000184086.1|Cyb561|ENSMUSG00000019590.10|cytochrome b-561
mm10_v2_chr15_-_79658749_79658798	1.59698	Rfx3_Rfx1_Rfx4	ENSMUST00000109646.2|Fam227a|ENSMUSG00000042564.6|family with sequence similarity 227, member A
mm10_v2_chr4_+_152338619_152338709	1.59629	Rfx3_Rfx1_Rfx4	ENSMUST00000030775.5|Chd5|ENSMUSG00000005045.10|chromodomain helicase DNA binding protein 5 	ENSMUST00000164662.1|Chd5|ENSMUSG00000005045.10|chromodomain helicase DNA binding protein 5
mm10_v2_chr4_-_117872520_117872560	1.58828	Rfx3_Rfx1_Rfx4	ENSMUST00000171052.1|Ccdc24|ENSMUSG00000078588.4|coiled-coil domain containing 24 	ENSMUST00000166325.1|Ccdc24|ENSMUSG00000078588.4|coiled-coil domain containing 24 	ENSMUST00000106422.2|Ccdc24|ENSMUSG00000078588.4|coiled-coil domain containing 24
mm10_v2_chr3_+_90062781_90062836	1.58761	Rfx3_Rfx1_Rfx4	ENSMUST00000029551.2|1700094D03Rik|ENSMUSG00000078667.2|RIKEN cDNA 1700094D03 gene
mm10_v2_chr4_+_111720187_111720205	1.58649	Rfx3_Rfx1_Rfx4	ENSMUST00000084354.3|Spata6|ENSMUSG00000034401.10|spermatogenesis associated 6
mm10_v2_chr8_-_64733534_64733554	1.56871	Rfx3_Rfx1_Rfx4	ENSMUST00000141021.1|Sc4mol|ENSMUSG00000031604.4|sterol-C4-methyl oxidase-like
mm10_v2_chr4_-_43669141_43669200	1.56609	Rfx3_Rfx1_Rfx4	ENSMUST00000056474.6|Fam221b|ENSMUSG00000043633.6|family with sequence similarity 221, member B
mm10_v2_chr2_-_38287347_38287394	1.56539	Rfx3_Rfx1_Rfx4	ENSMUST00000102787.3|Dennd1a|ENSMUSG00000035392.11|DENN/MADD domain containing 1A
mm10_v2_chr16_+_32099781_32099857	1.56204	Rfx3_Rfx1_Rfx4	ENSMUST00000115168.2|Cep19|ENSMUSG00000035790.9|centrosomal protein 19
mm10_v2_chr12_-_69790660_69790735	1.55662	Rfx3_Rfx1_Rfx4	ENSMUST00000021377.4|Cdkl1|ENSMUSG00000020990.4|cyclin-dependent kinase-like 1 (CDC2-related kinase)
mm10_v2_chr3_+_40540751_40540790	1.55626	Rfx3_Rfx1_Rfx4	ENSMUST00000091186.3|Intu|ENSMUSG00000060798.4|inturned planar cell polarity effector homolog (Drosophila)
mm10_v2_chr15_-_79141197_79141268	1.555	Rfx3_Rfx1_Rfx4	ENSMUST00000169604.1|1700088E04Rik|ENSMUSG00000033029.6|RIKEN cDNA 1700088E04 gene
mm10_v2_chr15_+_76671615_76671710	1.55318	Rfx3_Rfx1_Rfx4	ENSMUST00000037551.8|Ppp1r16a|ENSMUSG00000033819.9|protein phosphatase 1, regulatory (inhibitor) subunit 16A
mm10_v2_chr7_-_29213957_29214033	1.55051	Rfx3_Rfx1_Rfx4	ENSMUST00000169143.1|Catsperg1|ENSMUSG00000049676.8|catsper channel auxiliary subunit gamma 1 	ENSMUST00000047846.6|Catsperg1|ENSMUSG00000049676.8|catsper channel auxiliary subunit gamma 1
mm10_v2_chr10_+_81574699_81574739	1.5384	Rfx3_Rfx1_Rfx4	ENSMUST00000131794.1|Tle2|ENSMUSG00000034771.9|transducin-like enhancer of split 2, homolog of Drosophila E(spl) 	ENSMUST00000136341.1|Tle2|ENSMUSG00000034771.9|transducin-like enhancer of split 2, homolog of Drosophila E(spl)
mm10_v2_chrX_+_136993281_136993308	1.52867	Rfx3_Rfx1_Rfx4	ENSMUST00000033804.4|Zcchc18|ENSMUSG00000031428.5|zinc finger, CCHC domain containing 18
mm10_v2_chr11_+_43474276_43474340	1.51377	Rfx3_Rfx1_Rfx4	ENSMUST00000173002.1|C1qtnf2|ENSMUSG00000046491.4|C1q and tumor necrosis factor related protein 2 	ENSMUST00000057679.3|C1qtnf2|ENSMUSG00000046491.4|C1q and tumor necrosis factor related protein 2
mm10_v2_chr10_+_39899304_39899352	1.49341	Rfx3_Rfx1_Rfx4	ENSMUST00000181590.1|4930547M16Rik|ENSMUSG00000097890.1|RIKEN cDNA 4930547M16 gene
mm10_v2_chr5_-_140702241_140702378	1.487	Rfx3_Rfx1_Rfx4	ENSMUST00000077890.5|Iqce|ENSMUSG00000036555.8|IQ motif containing E 	ENSMUST00000041783.7|Iqce|ENSMUSG00000036555.8|IQ motif containing E 	ENSMUST00000142081.1|Iqce|ENSMUSG00000036555.8|IQ motif containing E
mm10_v2_chr14_+_50955992_50956169	1.48239	Rfx3_Rfx1_Rfx4	ENSMUST00000095925.4|Pnp2|ENSMUSG00000068417.7|purine-nucleoside phosphorylase 2
mm10_v2_chr10_-_62578387_62578457	1.47989	Rfx3_Rfx1_Rfx4	ENSMUST00000162525.1|2510003E04Rik|ENSMUSG00000036955.9|RIKEN cDNA 2510003E04 gene 	ENSMUST00000159704.1|2510003E04Rik|ENSMUSG00000036955.9|RIKEN cDNA 2510003E04 gene 	ENSMUST00000162759.1|2510003E04Rik|ENSMUSG00000036955.9|RIKEN cDNA 2510003E04 gene 	ENSMUST00000065887.7|2510003E04Rik|ENSMUSG00000036955.9|RIKEN cDNA 2510003E04 gene
mm10_v2_chr11_-_31824463_31824480	1.47681	Rfx3_Rfx1_Rfx4	ENSMUST00000129425.1|D630024D03Rik|ENSMUSG00000085772.1|RIKEN cDNA D630024D03 gene 	ENSMUST00000126265.1|D630024D03Rik|ENSMUSG00000085772.1|RIKEN cDNA D630024D03 gene
mm10_v2_chr4_+_138725282_138725325	1.47203	Rfx3_Rfx1_Rfx4	ENSMUST00000030530.4|Pla2g2c|ENSMUSG00000028750.6|phospholipase A2, group IIC 	ENSMUST00000124660.1|Pla2g2c|ENSMUSG00000028750.6|phospholipase A2, group IIC
mm10_v2_chr3_-_57847478_57847610	1.46516	Rfx3_Rfx1_Rfx4	ENSMUST00000120289.1|Pfn2|ENSMUSG00000027805.10|profilin 2 	ENSMUST00000066882.8|Pfn2|ENSMUSG00000027805.10|profilin 2
mm10_v2_chr17_-_35979237_35979526	1.45302	Rfx3_Rfx1_Rfx4	ENSMUST00000165613.2|Prr3|ENSMUSG00000038500.9|proline-rich polypeptide 3 	ENSMUST00000173872.1|Prr3|ENSMUSG00000038500.9|proline-rich polypeptide 3
mm10_v2_chr2_+_38998302_38998340	1.44633	Rfx3_Rfx1_Rfx4	ENSMUST00000112872.1|Wdr38|ENSMUSG00000035295.4|WD repeat domain 38
mm10_v2_chr15_-_33687840_33687883	1.44341	Rfx3_Rfx1_Rfx4	ENSMUST00000042021.3|Tspyl5|ENSMUSG00000038984.3|testis-specific protein, Y-encoded-like 5
mm10_v2_chr8_+_85060055_85060135	1.44205	Rfx3_Rfx1_Rfx4	ENSMUST00000095220.3|Fbxw9|ENSMUSG00000008167.8|F-box and WD-40 domain protein 9
mm10_v2_chr16_+_32099904_32099973	1.43767	Rfx3_Rfx1_Rfx4	ENSMUST00000042869.6|Cep19|ENSMUSG00000035790.9|centrosomal protein 19
mm10_v2_chr16_-_33056174_33056218	1.43015	Rfx3_Rfx1_Rfx4	ENSMUST00000115100.1|Iqcg|ENSMUSG00000035578.9|IQ motif containing G 	ENSMUST00000040309.8|Iqcg|ENSMUSG00000035578.9|IQ motif containing G
mm10_v2_chr16_+_36875119_36875205	1.42645	Rfx3_Rfx1_Rfx4	ENSMUST00000135406.1|Golgb1|ENSMUSG00000034243.10|golgi autoantigen, golgin subfamily b, macrogolgin 1 	ENSMUST00000023534.6|Golgb1|ENSMUSG00000078096.1|golgi autoantigen, golgin subfamily b, macrogolgin 1 	ENSMUST00000114812.1|Golgb1|ENSMUSG00000034243.10|golgi autoantigen, golgin subfamily b, macrogolgin 1 	ENSMUST00000134616.1|Golgb1|ENSMUSG00000034243.10|golgi autoantigen, golgin subfamily b, macrogolgin 1
mm10_v2_chr5_-_112228934_112228975	1.41969	Rfx3_Rfx1_Rfx4	ENSMUST00000181535.2|Miat|ENSMUSG00000097767.2|myocardial infarction associated transcript (non-protein coding)
mm10_v2_chr9_-_72985344_72985397	1.41924	Rfx3_Rfx1_Rfx4	ENSMUST00000124565.2|Gm5918|ENSMUSG00000086158.2|predicted gene 5918
mm10_v2_chr2_-_75938407_75938462	1.41373	Rfx3_Rfx1_Rfx4	ENSMUST00000099996.3|Ttc30b|ENSMUSG00000075273.3|tetratricopeptide repeat domain 30B
mm10_v2_chr3_+_105870898_105870912	1.40835	Rfx3_Rfx1_Rfx4	ENSMUST00000010279.5|Adora3|ENSMUSG00000074344.2|adenosine A3 receptor
mm10_v2_chr7_-_82648469_82648545	1.40822	Rfx3_Rfx1_Rfx4	ENSMUST00000056728.4|Fam154b|ENSMUSG00000038570.8|family with sequence similarity 154, member B
mm10_v2_chrX_+_136993147_136993216	1.40255	Rfx3_Rfx1_Rfx4	ENSMUST00000113067.1|Zcchc18|ENSMUSG00000031428.5|zinc finger, CCHC domain containing 18 	ENSMUST00000101227.2|Zcchc18|ENSMUSG00000031428.5|zinc finger, CCHC domain containing 18
mm10_v2_chr2_-_52742169_52742281	1.40135	Rfx3_Rfx1_Rfx4	ENSMUST00000102759.1|Stam2|ENSMUSG00000055371.11|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 	ENSMUST00000127316.1|Stam2|ENSMUSG00000055371.11|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2
mm10_v2_chr7_+_116504409_116504430	1.39712	Rfx3_Rfx1_Rfx4	ENSMUST00000183175.1|Nucb2|ENSMUSG00000030659.8|nucleobindin 2
mm10_v2_chrX_+_136590841_136590866	1.39536	Rfx3_Rfx1_Rfx4	ENSMUST00000138047.1|Tceal3|ENSMUSG00000044550.5|transcription elongation factor A (SII)-like 3 	ENSMUST00000145648.1|Tceal3|ENSMUSG00000044550.5|transcription elongation factor A (SII)-like 3
mm10_v2_chr5_-_114813943_114813976	1.39177	Rfx3_Rfx1_Rfx4	ENSMUST00000061251.5|1500011B03Rik|ENSMUSG00000072694.7|RIKEN cDNA 1500011B03 gene 	ENSMUST00000112160.3|1500011B03Rik|ENSMUSG00000072694.7|RIKEN cDNA 1500011B03 gene
mm10_v2_chr5_+_29195983_29196032	1.37743	Rfx3_Rfx1_Rfx4	ENSMUST00000160888.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000159272.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000001247.5|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000161398.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000160246.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32
mm10_v2_chr8_-_111933761_111933816	1.37568	Rfx3_Rfx1_Rfx4	ENSMUST00000034429.7|Tmem231|ENSMUSG00000031951.7|transmembrane protein 231
mm10_v2_chr5_-_148928619_148928659	1.36886	Rfx3_Rfx1_Rfx4	ENSMUST00000149169.1|Katnal1|ENSMUSG00000041298.9|katanin p60 subunit A-like 1 	ENSMUST00000047257.8|Katnal1|ENSMUSG00000041298.9|katanin p60 subunit A-like 1
mm10_v2_chr7_+_116504363_116504397	1.36005	Rfx3_Rfx1_Rfx4	ENSMUST00000032895.8|Nucb2|ENSMUSG00000030659.8|nucleobindin 2
mm10_v2_chr16_+_20696175_20696211	1.35878	Rfx3_Rfx1_Rfx4	ENSMUST00000128273.1|Fam131a|ENSMUSG00000050821.7|family with sequence similarity 131, member A
mm10_v2_chr7_-_141214080_141214082	1.34488	Rfx3_Rfx1_Rfx4	ENSMUST00000026573.5|1600016N20Rik|ENSMUSG00000025500.5|RIKEN cDNA 1600016N20 gene 	ENSMUST00000170841.1|1600016N20Rik|ENSMUSG00000025500.5|RIKEN cDNA 1600016N20 gene
mm10_v2_chr4_-_155669171_155669231	1.34155	Rfx3_Rfx1_Rfx4	ENSMUST00000103176.3|Mib2|ENSMUSG00000029060.11|mindbomb homolog 2 (Drosophila)
mm10_v2_chr7_+_3303503_3303565	1.33933	Rfx3_Rfx1_Rfx4	ENSMUST00000100301.4|Prkcg|ENSMUSG00000078816.3|protein kinase C, gamma
mm10_v2_chr11_-_74897052_74897094	1.3386	Rfx3_Rfx1_Rfx4	ENSMUST00000057631.5|Sgsm2|ENSMUSG00000038351.8|small G protein signaling modulator 2 	ENSMUST00000081799.5|Sgsm2|ENSMUSG00000038351.8|small G protein signaling modulator 2
mm10_v2_chr14_-_25927250_25927250	1.31926	Rfx3_Rfx1_Rfx4	ENSMUST00000100811.5|Tmem254a|ENSMUSG00000072676.5|transmembrane protein 254a
mm10_v2_chr7_-_6730412_6730431	1.2942	Rfx3_Rfx1_Rfx4	ENSMUST00000051209.4|Peg3|ENSMUSG00000002265.9|paternally expressed 3
mm10_v2_chr7_+_19176416_19176440	1.29002	Rfx3_Rfx1_Rfx4	ENSMUST00000117338.1|Eml2|ENSMUSG00000040811.9|echinoderm microtubule associated protein like 2
mm10_v2_chr11_+_108425192_108425304	1.28075	Rfx3_Rfx1_Rfx4	ENSMUST00000150863.2|Cep112|ENSMUSG00000020728.11|centrosomal protein 112 	ENSMUST00000061287.5|Cep112|ENSMUSG00000020728.11|centrosomal protein 112 	ENSMUST00000149683.2|Cep112|ENSMUSG00000020728.11|centrosomal protein 112
mm10_v2_chr2_+_164460945_164461018	1.27255	Rfx3_Rfx1_Rfx4	ENSMUST00000072452.4|Sys1|ENSMUSG00000045503.10|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
mm10_v2_chr10_-_81472859_81473127	1.26959	Rfx3_Rfx1_Rfx4	ENSMUST00000147524.1|Celf5|ENSMUSG00000034818.10|CUGBP, Elav-like family member 5 	ENSMUST00000119060.1|Celf5|ENSMUSG00000034818.10|CUGBP, Elav-like family member 5
mm10_v2_chr10_+_42860348_42860377	1.26683	Rfx3_Rfx1_Rfx4	ENSMUST00000063063.7|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr4_+_152096719_152096782	1.26273	Rfx3_Rfx1_Rfx4	ENSMUST00000105661.3|Plekhg5|ENSMUSG00000039713.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 5 	ENSMUST00000084115.3|Plekhg5|ENSMUSG00000039713.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 5
mm10_v2_chr9_+_107547288_107547379	1.24515	Rfx3_Rfx1_Rfx4	ENSMUST00000010188.7|Zmynd10|ENSMUSG00000010044.7|zinc finger, MYND domain containing 10
mm10_v2_chr7_+_44748413_44748560	1.24225	Rfx3_Rfx1_Rfx4	ENSMUST00000002275.8|Vrk3|ENSMUSG00000002205.9|vaccinia related kinase 3
mm10_v2_chr11_+_101552135_101552184	1.24156	Rfx3_Rfx1_Rfx4	ENSMUST00000103099.1|Nbr1|ENSMUSG00000017119.13|neighbor of Brca1 gene 1
mm10_v2_chr12_-_110840905_110840950	1.238	Rfx3_Rfx1_Rfx4	ENSMUST00000177224.1|Stk30|ENSMUSG00000056458.10|serine/threonine kinase 30 	ENSMUST00000084974.4|Stk30|ENSMUSG00000056458.10|serine/threonine kinase 30 	ENSMUST00000070565.8|Stk30|ENSMUSG00000056458.10|serine/threonine kinase 30
mm10_v2_chr19_+_4839366_4839482	1.22599	Rfx3_Rfx1_Rfx4	ENSMUST00000088653.2|Ccdc87|ENSMUSG00000067872.2|coiled-coil domain containing 87
mm10_v2_chr18_+_60925612_60925639	1.2216	Rfx3_Rfx1_Rfx4	ENSMUST00000102888.3|Camk2a|ENSMUSG00000024617.10|calcium/calmodulin-dependent protein kinase II alpha 	ENSMUST00000025519.4|Camk2a|ENSMUSG00000024617.10|calcium/calmodulin-dependent protein kinase II alpha
mm10_v2_chr9_-_87255536_87255536	1.21846	Rfx3_Rfx1_Rfx4	ENSMUST00000093802.4|4922501C03Rik|ENSMUSG00000056919.8|RIKEN cDNA 4922501C03 gene
mm10_v2_chr4_+_126058557_126058613	1.21572	Rfx3_Rfx1_Rfx4	ENSMUST00000035497.4|Oscp1|ENSMUSG00000042616.7|organic solute carrier partner 1
mm10_v2_chr2_+_85050439_85050500	1.21202	Rfx3_Rfx1_Rfx4	ENSMUST00000111605.2|Tnks1bp1|ENSMUSG00000033955.6|tankyrase 1 binding protein 1
mm10_v2_chr14_-_26066961_26066961	1.20628	Rfx3_Rfx1_Rfx4	ENSMUST00000100818.5|Tmem254c|ENSMUSG00000072680.5|transmembrane protein 254c
mm10_v2_chr18_-_38918642_38918771	1.20282	Rfx3_Rfx1_Rfx4	ENSMUST00000040647.4|Fgf1|ENSMUSG00000036585.9|fibroblast growth factor 1
mm10_v2_chr16_-_96192222_96192262	1.18781	Rfx3_Rfx1_Rfx4	ENSMUST00000113804.1|Lca5l|ENSMUSG00000045275.9|Leber congenital amaurosis 5-like 	ENSMUST00000054855.7|Lca5l|ENSMUSG00000045275.9|Leber congenital amaurosis 5-like
mm10_v2_chr11_-_29247208_29247409	1.1814	Rfx3_Rfx1_Rfx4	ENSMUST00000020754.3|Ccdc104|ENSMUSG00000020462.8|coiled-coil domain containing 104
mm10_v2_chr14_-_54253907_54253920	1.17657	Rfx3_Rfx1_Rfx4	ENSMUST00000128231.1|Dad1|ENSMUSG00000022174.8|defender against cell death 1
mm10_v2_chr8_-_95434869_95434901	1.16279	Rfx3_Rfx1_Rfx4	ENSMUST00000034249.6|Gtl3|ENSMUSG00000031796.6|gene trap locus 3
mm10_v2_chr19_+_6061176_6061235	1.15267	Rfx3_Rfx1_Rfx4	ENSMUST00000162726.3|Znhit2|ENSMUSG00000075227.5|zinc finger, HIT domain containing 2
mm10_v2_chr1_+_191977368_191977389	1.15246	Rfx3_Rfx1_Rfx4	ENSMUST00000181512.1|Rd3|ENSMUSG00000049353.11|retinal degeneration 3 	ENSMUST00000053463.7|Rd3|ENSMUSG00000049353.11|retinal degeneration 3 	ENSMUST00000180463.1|Rd3|ENSMUSG00000049353.11|retinal degeneration 3
mm10_v2_chr6_-_122340200_122340244	1.15034	Rfx3_Rfx1_Rfx4	ENSMUST00000159384.1|Phc1|ENSMUSG00000040669.8|polyhomeotic-like 1 (Drosophila)
mm10_v2_chr7_-_121981669_121981711	1.14101	Rfx3_Rfx1_Rfx4	ENSMUST00000057576.7|Cog7|ENSMUSG00000034951.9|component of oligomeric golgi complex 7
mm10_v2_chr7_+_44748640_44748651	1.1408	Rfx3_Rfx1_Rfx4	ENSMUST00000165957.1|Vrk3|ENSMUSG00000002205.9|vaccinia related kinase 3 	ENSMUST00000144515.2|Vrk3|ENSMUSG00000002205.9|vaccinia related kinase 3
mm10_v2_chr19_-_4906598_4906632	1.13965	Rfx3_Rfx1_Rfx4	ENSMUST00000053506.6|Bbs1|ENSMUSG00000006464.8|Bardet-Biedl syndrome 1 (human)
mm10_v2_chr1_+_37299882_37299937	1.13896	Rfx3_Rfx1_Rfx4	ENSMUST00000136846.1|Inpp4a|ENSMUSG00000026113.11|inositol polyphosphate-4-phosphatase, type I 	ENSMUST00000027287.4|Inpp4a|ENSMUSG00000026113.11|inositol polyphosphate-4-phosphatase, type I 	ENSMUST00000132401.1|Inpp4a|ENSMUSG00000026113.11|inositol polyphosphate-4-phosphatase, type I
mm10_v2_chr14_+_32085804_32085877	1.13778	Rfx3_Rfx1_Rfx4	ENSMUST00000170600.1|Oxnad1|ENSMUSG00000021906.7|oxidoreductase NAD-binding domain containing 1 	ENSMUST00000168986.1|Oxnad1|ENSMUSG00000021906.7|oxidoreductase NAD-binding domain containing 1 	ENSMUST00000169649.1|Oxnad1|ENSMUSG00000021906.7|oxidoreductase NAD-binding domain containing 1
mm10_v2_chr17_+_88530113_88530142	1.13538	Rfx3_Rfx1_Rfx4	ENSMUST00000038551.6|Ppp1r21|ENSMUSG00000034709.7|protein phosphatase 1, regulatory subunit 21
mm10_v2_chr10_-_80742211_80742280	1.13476	Rfx3_Rfx1_Rfx4	ENSMUST00000020420.7|Ap3d1|ENSMUSG00000020198.7|adaptor-related protein complex 3, delta 1 subunit
mm10_v2_chr12_+_69790288_69790288	1.12303	Rfx3_Rfx1_Rfx4	ENSMUST00000021378.3|4930512B01Rik|ENSMUSG00000020992.3|RIKEN cDNA 4930512B01 gene
mm10_v2_chr7_+_16959714_16959800	1.09924	Rfx3_Rfx1_Rfx4	ENSMUST00000038163.6|Pnmal1|ENSMUSG00000041141.6|PNMA-like 1
mm10_v2_chr16_+_44394771_44394804	1.08682	Rfx3_Rfx1_Rfx4	ENSMUST00000099742.2|Wdr52|ENSMUSG00000071550.7|WD repeat domain 52
mm10_v2_chr8_-_83332416_83332494	1.08394	Rfx3_Rfx1_Rfx4	ENSMUST00000177594.1|Elmod2|ENSMUSG00000035151.6|ELMO/CED-12 domain containing 2 	ENSMUST00000053902.3|Elmod2|ENSMUSG00000035151.6|ELMO/CED-12 domain containing 2
mm10_v2_chr2_-_164745916_164745940	1.08232	Rfx3_Rfx1_Rfx4	ENSMUST00000109328.1|Wfdc3|ENSMUSG00000076434.3|WAP four-disulfide core domain 3 	ENSMUST00000043448.1|Wfdc3|ENSMUSG00000039951.1|WAP four-disulfide core domain 3
mm10_v2_chr7_+_3303643_3303654	1.06683	Rfx3_Rfx1_Rfx4	ENSMUST00000172109.1|Prkcg|ENSMUSG00000078816.3|protein kinase C, gamma
mm10_v2_chr19_-_57197556_57197631	1.06611	Rfx3_Rfx1_Rfx4	ENSMUST00000099294.2|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr5_+_137758133_137758213	1.06278	Rfx3_Rfx1_Rfx4	ENSMUST00000141733.1|Tsc22d4|ENSMUSG00000029723.10|TSC22 domain family, member 4 	ENSMUST00000110985.1|Tsc22d4|ENSMUSG00000029723.10|TSC22 domain family, member 4
mm10_v2_chr9_+_37539255_37539279	1.05749	Rfx3_Rfx1_Rfx4	ENSMUST00000002008.5|Vsig2|ENSMUSG00000001943.7|V-set and immunoglobulin domain containing 2
mm10_v2_chr8_+_36993551_36993611	1.05734	Rfx3_Rfx1_Rfx4	ENSMUST00000098825.3|AI429214|ENSMUSG00000074384.3|expressed sequence AI429214
mm10_v2_chr9_-_64341145_64341257	1.05087	Rfx3_Rfx1_Rfx4	ENSMUST00000120760.1|Dis3l|ENSMUSG00000032396.11|DIS3 mitotic control homolog (S. cerevisiae)-like 	ENSMUST00000168844.2|Dis3l|ENSMUSG00000032396.11|DIS3 mitotic control homolog (S. cerevisiae)-like
mm10_v2_chr7_+_127588698_127588725	1.04608	Rfx3_Rfx1_Rfx4	ENSMUST00000033088.6|Rnf40|ENSMUSG00000030816.7|ring finger protein 40
mm10_v2_chr2_-_127788854_127788900	1.04503	Rfx3_Rfx1_Rfx4	ENSMUST00000028857.7|Nphp1|ENSMUSG00000027378.10|nephronophthisis 1 (juvenile) homolog (human) 	ENSMUST00000110357.1|Nphp1|ENSMUSG00000027378.10|nephronophthisis 1 (juvenile) homolog (human)
mm10_v2_chr2_+_118926496_118926554	1.03647	Rfx3_Rfx1_Rfx4	ENSMUST00000099546.4|Chst14|ENSMUSG00000074916.4|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14 	ENSMUST00000110837.1|Chst14|ENSMUSG00000074916.4|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14
mm10_v2_chr5_+_30814571_30814641	1.03624	Rfx3_Rfx1_Rfx4	ENSMUST00000031058.8|Mapre3|ENSMUSG00000029166.8|microtubule-associated protein, RP/EB family, member 3
mm10_v2_chr7_-_109493627_109493738	1.03011	Rfx3_Rfx1_Rfx4	ENSMUST00000106739.1|Trim66|ENSMUSG00000031026.8|tripartite motif-containing 66
mm10_v2_chr2_+_145934776_145934797	1.02879	Rfx3_Rfx1_Rfx4	ENSMUST00000126415.1|4930529M08Rik|ENSMUSG00000037143.11|RIKEN cDNA 4930529M08 gene 	ENSMUST00000116398.1|4930529M08Rik|ENSMUSG00000037143.11|RIKEN cDNA 4930529M08 gene
mm10_v2_chr11_+_69070790_69070856	1.02726	Rfx3_Rfx1_Rfx4	ENSMUST00000075980.5|Tmem107|ENSMUSG00000020895.8|transmembrane protein 107 	ENSMUST00000094081.4|Tmem107|ENSMUSG00000020895.8|transmembrane protein 107
mm10_v2_chr14_-_31001588_31001672	1.02725	Rfx3_Rfx1_Rfx4	ENSMUST00000162092.1|Spcs1|ENSMUSG00000021917.8|signal peptidase complex subunit 1 homolog (S. cerevisiae) 	ENSMUST00000160342.1|Spcs1|ENSMUSG00000021917.8|signal peptidase complex subunit 1 homolog (S. cerevisiae)
mm10_v2_chr11_+_49794157_49794187	1.01449	Rfx3_Rfx1_Rfx4	ENSMUST00000020629.4|Gfpt2|ENSMUSG00000020363.6|glutamine fructose-6-phosphate transaminase 2
mm10_v2_chr17_+_33920522_33920554	1.01358	Rfx3_Rfx1_Rfx4	ENSMUST00000172489.1|Tapbp|ENSMUSG00000024308.8|TAP binding protein
mm10_v2_chr17_+_8988333_8988347	1.00929	Rfx3_Rfx1_Rfx4	ENSMUST00000024650.5|1700010I14Rik|ENSMUSG00000023873.6|RIKEN cDNA 1700010I14 gene
mm10_v2_chr11_+_101425068_101425114	1.00685	Rfx3_Rfx1_Rfx4	ENSMUST00000040561.5|Rundc1|ENSMUSG00000035007.5|RUN domain containing 1
mm10_v2_chr7_-_68749170_68749241	1.00469	Rfx3_Rfx1_Rfx4	ENSMUST00000118110.1|Arrdc4|ENSMUSG00000042659.8|arrestin domain containing 4 	ENSMUST00000048068.7|Arrdc4|ENSMUSG00000042659.8|arrestin domain containing 4
mm10_v2_chr9_-_15627897_15627907	0.998956	Rfx3_Rfx1_Rfx4	ENSMUST00000045513.6|Ccdc67|ENSMUSG00000039977.10|coiled-coil domain containing 67
mm10_v2_chr11_+_78536393_78536492	0.997986	Rfx3_Rfx1_Rfx4	ENSMUST00000050366.8|Ift20|ENSMUSG00000001105.9|intraflagellar transport 20 	ENSMUST00000108275.1|Ift20|ENSMUSG00000001105.9|intraflagellar transport 20
mm10_v2_chr11_+_78536355_78536368	0.993907	Rfx3_Rfx1_Rfx4	ENSMUST00000128788.1|Ift20|ENSMUSG00000001105.9|intraflagellar transport 20
mm10_v2_chr19_+_6363671_6363704	0.992716	Rfx3_Rfx1_Rfx4	ENSMUST00000131252.1|Sf1|ENSMUSG00000024949.11|splicing factor 1
mm10_v2_chr10_+_86705811_86705878	0.986317	Rfx3_Rfx1_Rfx4	ENSMUST00000061458.7|BC030307|ENSMUSG00000044937.8|cDNA sequence BC030307 	ENSMUST00000075632.6|BC030307|ENSMUSG00000044937.8|cDNA sequence BC030307
mm10_v2_chr4_-_47010781_47010807	0.975778	Rfx3_Rfx1_Rfx4	ENSMUST00000135777.1|Gm568|ENSMUSG00000048824.7|predicted gene 568
mm10_v2_chr14_-_78536762_78536851	0.974459	Rfx3_Rfx1_Rfx4	ENSMUST00000123853.1|Akap11|ENSMUSG00000022016.9|A kinase (PRKA) anchor protein 11
mm10_v2_chr14_-_78536854_78536879	0.967492	Rfx3_Rfx1_Rfx4	ENSMUST00000022593.5|Akap11|ENSMUSG00000022016.9|A kinase (PRKA) anchor protein 11
mm10_v2_chr1_-_87510306_87510373	0.96482	Rfx3_Rfx1_Rfx4	ENSMUST00000027477.8|Ngef|ENSMUSG00000026259.8|neuronal guanine nucleotide exchange factor
mm10_v2_chr6_-_122339627_122339708	0.964008	Rfx3_Rfx1_Rfx4	ENSMUST00000161210.1|Phc1|ENSMUSG00000040669.8|polyhomeotic-like 1 (Drosophila) 	ENSMUST00000161054.1|Phc1|ENSMUSG00000040669.8|polyhomeotic-like 1 (Drosophila) 	ENSMUST00000159252.1|Phc1|ENSMUSG00000040669.8|polyhomeotic-like 1 (Drosophila) 	ENSMUST00000161739.1|Phc1|ENSMUSG00000040669.8|polyhomeotic-like 1 (Drosophila) 	ENSMUST00000161149.1|Phc1|ENSMUSG00000040669.8|polyhomeotic-like 1 (Drosophila)
mm10_v2_chr9_-_64341288_64341311	0.961287	Rfx3_Rfx1_Rfx4	ENSMUST00000068367.7|Dis3l|ENSMUSG00000032396.11|DIS3 mitotic control homolog (S. cerevisiae)-like
mm10_v2_chr9_-_51008936_51009080	0.951091	Rfx3_Rfx1_Rfx4	ENSMUST00000176824.1|Sik2|ENSMUSG00000037112.10|salt inducible kinase 2 	ENSMUST00000176663.1|Sik2|ENSMUSG00000037112.10|salt inducible kinase 2 	ENSMUST00000041375.10|Sik2|ENSMUSG00000037112.10|salt inducible kinase 2
mm10_v2_chr4_+_137681663_137681719	0.94908	Rfx3_Rfx1_Rfx4	ENSMUST00000047243.5|Rap1gap|ENSMUSG00000041351.10|Rap1 GTPase-activating protein
mm10_v2_chr2_+_125136692_125136769	0.948019	Rfx3_Rfx1_Rfx4	ENSMUST00000099452.2|Ctxn2|ENSMUSG00000074872.2|cortexin 2
mm10_v2_chr9_+_108569885_108569943	0.937827	Rfx3_Rfx1_Rfx4	ENSMUST00000019183.8|Dalrd3|ENSMUSG00000019039.8|DALR anticodon binding domain containing 3
mm10_v2_chr9_-_121839460_121839465	0.935107	Rfx3_Rfx1_Rfx4	ENSMUST00000135986.2|Ccdc13|ENSMUSG00000079235.4|coiled-coil domain containing 13
mm10_v2_chr19_-_8929323_8929356	0.934282	Rfx3_Rfx1_Rfx4	ENSMUST00000096242.3|Rom1|ENSMUSG00000071648.3|rod outer segment membrane protein 1
mm10_v2_chrX_-_140062712_140062726	0.932275	Rfx3_Rfx1_Rfx4	ENSMUST00000133780.1|Nup62cl|ENSMUSG00000072944.5|nucleoporin 62 C-terminal like
mm10_v2_chr2_+_118663235_118663309	0.926351	Rfx3_Rfx1_Rfx4	ENSMUST00000099557.3|Pak6|ENSMUSG00000074923.4|p21 protein (Cdc42/Rac)-activated kinase 6
mm10_v2_chr7_+_44857309_44857354	0.924828	Rfx3_Rfx1_Rfx4	ENSMUST00000098478.3|Pnkp|ENSMUSG00000002963.10|polynucleotide kinase 3'- phosphatase
mm10_v2_chr3_+_155093414_155093475	0.923681	Rfx3_Rfx1_Rfx4	ENSMUST00000029833.7|Lrriq3|ENSMUSG00000028182.9|leucine-rich repeats and IQ motif containing 3
mm10_v2_chr9_-_59353430_59353508	0.919147	Rfx3_Rfx1_Rfx4	ENSMUST00000026265.6|Bbs4|ENSMUSG00000025235.7|Bardet-Biedl syndrome 4 (human)
mm10_v2_chr7_+_6172482_6172531	0.915796	Rfx3_Rfx1_Rfx4	ENSMUST00000108567.1|Zfp444|ENSMUSG00000044876.8|zinc finger protein 444 	ENSMUST00000054680.5|Zfp444|ENSMUSG00000044876.8|zinc finger protein 444 	ENSMUST00000108566.1|Zfp444|ENSMUSG00000044876.8|zinc finger protein 444
mm10_v2_chr7_+_4740178_4740206	0.910687	Rfx3_Rfx1_Rfx4	ENSMUST00000108583.2|Suv420h2|ENSMUSG00000059851.9|suppressor of variegation 4-20 homolog 2 (Drosophila)
mm10_v2_chr16_-_3908639_3908689	0.909093	Rfx3_Rfx1_Rfx4	ENSMUST00000115859.1|1700037C18Rik|ENSMUSG00000005983.9|RIKEN cDNA 1700037C18 gene
mm10_v2_chr12_-_85374696_85374719	0.908476	Rfx3_Rfx1_Rfx4	ENSMUST00000040766.7|Tmed10|ENSMUSG00000021248.8|transmembrane emp24-like trafficking protein 10 (yeast)
mm10_v2_chr15_+_9436028_9436083	0.904978	Rfx3_Rfx1_Rfx4	ENSMUST00000042360.3|Capsl|ENSMUSG00000039676.3|calcyphosine-like
mm10_v2_chr11_-_89302545_89302567	0.904013	Rfx3_Rfx1_Rfx4	ENSMUST00000061728.3|Nog|ENSMUSG00000048616.3|noggin
mm10_v2_chr9_+_53405280_53405323	0.899995	Rfx3_Rfx1_Rfx4	ENSMUST00000005262.1|4930550C14Rik|ENSMUSG00000005131.3|RIKEN cDNA 4930550C14 gene
mm10_v2_chrX_-_102071188_102071204	0.895781	Rfx3_Rfx1_Rfx4	ENSMUST00000113631.1|Rgag4|ENSMUSG00000049191.6|retrotransposon gag domain containing 4
mm10_v2_chr7_-_13054514_13054514	0.894407	Rfx3_Rfx1_Rfx4	ENSMUST00000182087.1|Mzf1|ENSMUSG00000030380.10|myeloid zinc finger 1
mm10_v2_chr19_-_4283033_4283142	0.883619	Rfx3_Rfx1_Rfx4	ENSMUST00000167215.1|Ankrd13d|ENSMUSG00000005986.9|ankyrin repeat domain 13 family, member D 	ENSMUST00000056888.6|Ankrd13d|ENSMUSG00000005986.9|ankyrin repeat domain 13 family, member D
mm10_v2_chr5_+_124112297_124112351	0.879641	Rfx3_Rfx1_Rfx4	ENSMUST00000024470.6|Ogfod2|ENSMUSG00000023707.7|2-oxoglutarate and iron-dependent oxygenase domain containing 2 	ENSMUST00000119269.1|Ogfod2|ENSMUSG00000023707.7|2-oxoglutarate and iron-dependent oxygenase domain containing 2
mm10_v2_chr10_-_41490335_41490368	0.879113	Rfx3_Rfx1_Rfx4	ENSMUST00000019965.6|Smpd2|ENSMUSG00000019822.6|sphingomyelin phosphodiesterase 2, neutral
mm10_v2_chr2_-_134644125_134644145	0.875207	Rfx3_Rfx1_Rfx4	ENSMUST00000038228.4|Tmx4|ENSMUSG00000034723.5|thioredoxin-related transmembrane protein 4
mm10_v2_chr14_-_31001311_31001389	0.868002	Rfx3_Rfx1_Rfx4	ENSMUST00000161219.1|Spcs1|ENSMUSG00000021917.8|signal peptidase complex subunit 1 homolog (S. cerevisiae) 	ENSMUST00000182501.1|Spcs1|ENSMUSG00000021917.8|signal peptidase complex subunit 1 homolog (S. cerevisiae)
mm10_v2_chr2_-_75981967_75981967	0.866263	Rfx3_Rfx1_Rfx4	ENSMUST00000099994.3|Ttc30a1|ENSMUSG00000075271.3|tetratricopeptide repeat domain 30A1
mm10_v2_chr3_-_89245005_89245031	0.864195	Rfx3_Rfx1_Rfx4	ENSMUST00000107464.1|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr2_-_134644079_134644109	0.863502	Rfx3_Rfx1_Rfx4	ENSMUST00000110119.1|Tmx4|ENSMUSG00000034723.5|thioredoxin-related transmembrane protein 4
mm10_v2_chr2_+_27009926_27009935	0.862595	Rfx3_Rfx1_Rfx4	ENSMUST00000114005.2|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1 	ENSMUST00000114004.1|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1 	ENSMUST00000114006.1|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1 	ENSMUST00000114007.1|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1
mm10_v2_chr17_+_34604262_34604304	0.852064	Rfx3_Rfx1_Rfx4	ENSMUST00000174041.1|Agpat1|ENSMUSG00000034254.11|1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)
mm10_v2_chr12_+_52699297_52699411	0.846964	Rfx3_Rfx1_Rfx4	ENSMUST00000095737.3|Akap6|ENSMUSG00000061603.7|A kinase (PRKA) anchor protein 6
mm10_v2_chr3_-_75451818_75451818	0.846521	Rfx3_Rfx1_Rfx4	ENSMUST00000178270.1|Wdr49|ENSMUSG00000095162.1|WD repeat domain 49
mm10_v2_chr5_+_30814722_30814776	0.845221	Rfx3_Rfx1_Rfx4	ENSMUST00000114724.1|Mapre3|ENSMUSG00000029166.8|microtubule-associated protein, RP/EB family, member 3
mm10_v2_chr2_-_26140468_26140530	0.836547	Rfx3_Rfx1_Rfx4	ENSMUST00000133808.1|C330006A16Rik|ENSMUSG00000087679.2|RIKEN cDNA C330006A16 gene
mm10_v2_chr3_-_89245159_89245199	0.835729	Rfx3_Rfx1_Rfx4	ENSMUST00000090924.6|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr7_-_19149189_19149273	0.831072	Rfx3_Rfx1_Rfx4	ENSMUST00000032566.1|Qpctl|ENSMUSG00000030407.1|glutaminyl-peptide cyclotransferase-like
mm10_v2_chr1_+_20951666_20951717	0.828599	Rfx3_Rfx1_Rfx4	ENSMUST00000038447.4|Efhc1|ENSMUSG00000041809.4|EF-hand domain (C-terminal) containing 1
mm10_v2_chr9_-_105395237_105395289	0.826601	Rfx3_Rfx1_Rfx4	ENSMUST00000140851.1|Nek11|ENSMUSG00000035032.5|NIMA (never in mitosis gene a)-related expressed kinase 11
mm10_v2_chr2_+_28700155_28700187	0.82483	Rfx3_Rfx1_Rfx4	ENSMUST00000074156.6|Ak8|ENSMUSG00000026807.8|adenylate kinase 8
mm10_v2_chr11_+_101468164_101468175	0.817918	Rfx3_Rfx1_Rfx4	ENSMUST00000001347.6|Rnd2|ENSMUSG00000001313.6|Rho family GTPase 2
mm10_v2_chr17_-_35704000_35704139	0.809629	Rfx3_Rfx1_Rfx4	ENSMUST00000097333.3|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1 	ENSMUST00000003628.6|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr2_-_92024502_92024529	0.807985	Rfx3_Rfx1_Rfx4	ENSMUST00000028663.4|Creb3l1|ENSMUSG00000027230.9|cAMP responsive element binding protein 3-like 1
mm10_v2_chr17_-_23684019_23684032	0.800761	Rfx3_Rfx1_Rfx4	ENSMUST00000085989.5|Cldn9|ENSMUSG00000066720.5|claudin 9
mm10_v2_chr7_-_44553901_44553955	0.799373	Rfx3_Rfx1_Rfx4	ENSMUST00000107910.1|Nr1h2|ENSMUSG00000060601.6|nuclear receptor subfamily 1, group H, member 2 	ENSMUST00000167197.1|Nr1h2|ENSMUSG00000060601.6|nuclear receptor subfamily 1, group H, member 2 	ENSMUST00000107911.1|Nr1h2|ENSMUSG00000060601.6|nuclear receptor subfamily 1, group H, member 2 	ENSMUST00000073488.5|Nr1h2|ENSMUSG00000060601.6|nuclear receptor subfamily 1, group H, member 2
mm10_v2_chr9_+_22003035_22003046	0.79824	Rfx3_Rfx1_Rfx4	ENSMUST00000115331.2|Prkcsh|ENSMUSG00000003402.7|protein kinase C substrate 80K-H 	ENSMUST00000003493.7|Prkcsh|ENSMUSG00000003402.7|protein kinase C substrate 80K-H
mm10_v2_chr4_-_125065603_125065703	0.79631	Rfx3_Rfx1_Rfx4	ENSMUST00000036383.3|Dnali1|ENSMUSG00000042707.6|dynein, axonemal, light intermediate polypeptide 1
mm10_v2_chrX_-_140062550_140062583	0.792135	Rfx3_Rfx1_Rfx4	ENSMUST00000124075.1|Nup62cl|ENSMUSG00000072944.5|nucleoporin 62 C-terminal like 	ENSMUST00000101212.2|Nup62cl|ENSMUSG00000072944.5|nucleoporin 62 C-terminal like 	ENSMUST00000125678.2|Nup62cl|ENSMUSG00000072944.5|nucleoporin 62 C-terminal like
mm10_v2_chr7_+_4740111_4740120	0.788589	Rfx3_Rfx1_Rfx4	ENSMUST00000098853.2|Suv420h2|ENSMUSG00000059851.9|suppressor of variegation 4-20 homolog 2 (Drosophila)
mm10_v2_chr19_+_10577439_10577461	0.785381	Rfx3_Rfx1_Rfx4	ENSMUST00000168445.1|Cyb561a3|ENSMUSG00000034445.7|cytochrome b561 family, member A3
mm10_v2_chr1_+_164275559_164275660	0.777897	Rfx3_Rfx1_Rfx4	ENSMUST00000027867.6|Ccdc181|ENSMUSG00000026578.6|coiled-coil domain containing 181
mm10_v2_chr1_+_86154752_86154821	0.776065	Rfx3_Rfx1_Rfx4	ENSMUST00000113309.2|Armc9|ENSMUSG00000062590.7|armadillo repeat containing 9 	ENSMUST00000027434.8|Armc9|ENSMUSG00000062590.7|armadillo repeat containing 9 	ENSMUST00000131412.1|Armc9|ENSMUSG00000062590.7|armadillo repeat containing 9
mm10_v2_chr7_+_4740137_4740175	0.773103	Rfx3_Rfx1_Rfx4	ENSMUST00000130215.1|Suv420h2|ENSMUSG00000059851.9|suppressor of variegation 4-20 homolog 2 (Drosophila) 	ENSMUST00000108582.3|Suv420h2|ENSMUSG00000059851.9|suppressor of variegation 4-20 homolog 2 (Drosophila)
mm10_v2_chr14_+_54254124_54254247	0.76436	Rfx3_Rfx1_Rfx4	ENSMUST00000180359.1|Abhd4|ENSMUSG00000040997.7|abhydrolase domain containing 4
mm10_v2_chr1_+_75521521_75521602	0.760306	Rfx3_Rfx1_Rfx4	ENSMUST00000027414.9|Stk11ip|ENSMUSG00000026213.9|serine/threonine kinase 11 interacting protein 	ENSMUST00000113553.1|Stk11ip|ENSMUSG00000026213.9|serine/threonine kinase 11 interacting protein
mm10_v2_chr6_+_34029421_34029456	0.757823	Rfx3_Rfx1_Rfx4	ENSMUST00000070189.3|Lrguk|ENSMUSG00000056215.6|leucine-rich repeats and guanylate kinase domain containing 	ENSMUST00000101564.2|Lrguk|ENSMUSG00000056215.6|leucine-rich repeats and guanylate kinase domain containing
mm10_v2_chr9_-_110476637_110476694	0.756866	Rfx3_Rfx1_Rfx4	ENSMUST00000111934.1|Klhl18|ENSMUSG00000054792.9|kelch-like 18 	ENSMUST00000068025.6|Klhl18|ENSMUSG00000054792.9|kelch-like 18
mm10_v2_chr6_-_90810118_90810160	0.755577	Rfx3_Rfx1_Rfx4	ENSMUST00000101151.3|Iqsec1|ENSMUSG00000034312.7|IQ motif and Sec7 domain 1
mm10_v2_chr19_+_6363719_6363810	0.750001	Rfx3_Rfx1_Rfx4	ENSMUST00000113489.1|Sf1|ENSMUSG00000024949.11|splicing factor 1 	ENSMUST00000113488.1|Sf1|ENSMUSG00000024949.11|splicing factor 1
mm10_v2_chr17_+_46248069_46248139	0.745078	Rfx3_Rfx1_Rfx4	ENSMUST00000095263.3|Yipf3|ENSMUSG00000071074.3|Yip1 domain family, member 3 	ENSMUST00000123311.1|Yipf3|ENSMUSG00000071074.3|Yip1 domain family, member 3
mm10_v2_chr5_-_149636331_149636376	0.744597	Rfx3_Rfx1_Rfx4	ENSMUST00000074846.7|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1 	ENSMUST00000110498.1|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1 	ENSMUST00000127977.1|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1 	ENSMUST00000132412.1|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1
mm10_v2_chr9_-_15627910_15627933	0.743345	Rfx3_Rfx1_Rfx4	ENSMUST00000152377.1|Ccdc67|ENSMUSG00000039977.10|coiled-coil domain containing 67 	ENSMUST00000115593.3|Ccdc67|ENSMUSG00000039977.10|coiled-coil domain containing 67
mm10_v2_chr13_-_38635036_38635119	0.741466	Rfx3_Rfx1_Rfx4	ENSMUST00000035899.6|Bloc1s5|ENSMUSG00000038982.9|biogenesis of organelles complex-1, subunit 5, muted
mm10_v2_chr19_-_6942406_6942450	0.736834	Rfx3_Rfx1_Rfx4	ENSMUST00000099782.3|Gpr137|ENSMUSG00000024958.6|G protein-coupled receptor 137
mm10_v2_chr10_-_68541842_68541908	0.729705	Rfx3_Rfx1_Rfx4	ENSMUST00000020103.2|1700040L02Rik|ENSMUSG00000019945.3|RIKEN cDNA 1700040L02 gene
mm10_v2_chr11_-_90638062_90638100	0.729061	Rfx3_Rfx1_Rfx4	ENSMUST00000020858.7|Stxbp4|ENSMUSG00000020546.8|syntaxin binding protein 4 	ENSMUST00000107875.1|Stxbp4|ENSMUSG00000020546.8|syntaxin binding protein 4 	ENSMUST00000107872.1|Stxbp4|ENSMUSG00000020546.8|syntaxin binding protein 4 	ENSMUST00000143203.1|Stxbp4|ENSMUSG00000020546.8|syntaxin binding protein 4
mm10_v2_chr9_-_8042785_8042882	0.727141	Rfx3_Rfx1_Rfx4	ENSMUST00000065291.1|9230110C19Rik|ENSMUSG00000053070.4|RIKEN cDNA 9230110C19 gene
mm10_v2_chr10_-_81060134_81060204	0.723572	Rfx3_Rfx1_Rfx4	ENSMUST00000005067.5|Sgta|ENSMUSG00000004937.5|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha
mm10_v2_chr2_+_31152316_31152360	0.722438	Rfx3_Rfx1_Rfx4	ENSMUST00000056433.6|Gpr107|ENSMUSG00000000194.7|G protein-coupled receptor 107
mm10_v2_chr16_+_17646564_17646620	0.716396	Rfx3_Rfx1_Rfx4	ENSMUST00000182117.1|Ccdc74a|ENSMUSG00000041617.4|coiled-coil domain containing 74A 	ENSMUST00000182671.1|Ccdc74a|ENSMUSG00000041617.4|coiled-coil domain containing 74A 	ENSMUST00000182344.1|Ccdc74a|ENSMUSG00000041617.4|coiled-coil domain containing 74A
mm10_v2_chr2_+_164823001_164823040	0.715999	Rfx3_Rfx1_Rfx4	ENSMUST00000132282.1|Zswim1|ENSMUSG00000017764.2|zinc finger SWIM-type containing 1
mm10_v2_chr6_-_88518760_88518905	0.715293	Rfx3_Rfx1_Rfx4	ENSMUST00000032168.5|Sec61a1|ENSMUSG00000030082.8|Sec61 alpha 1 subunit (S. cerevisiae)
mm10_v2_chr2_-_28583189_28583230	0.713218	Rfx3_Rfx1_Rfx4	ENSMUST00000113889.2|Gtf3c5|ENSMUSG00000026816.8|general transcription factor IIIC, polypeptide 5
mm10_v2_chr7_-_44929410_44929521	0.711471	Rfx3_Rfx1_Rfx4	ENSMUST00000107857.3|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit 	ENSMUST00000085399.6|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit 	ENSMUST00000167930.1|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit 	ENSMUST00000166972.1|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit
mm10_v2_chr13_+_21945084_21945140	0.707264	Rfx3_Rfx1_Rfx4	ENSMUST00000176511.1|Zfp184|ENSMUSG00000006720.10|zinc finger protein 184 (Kruppel-like) 	ENSMUST00000102978.1|Zfp184|ENSMUSG00000006720.10|zinc finger protein 184 (Kruppel-like) 	ENSMUST00000152258.2|Zfp184|ENSMUSG00000006720.10|zinc finger protein 184 (Kruppel-like)
mm10_v2_chr5_-_31291026_31291143	0.703296	Rfx3_Rfx1_Rfx4	ENSMUST00000041565.7|Ift172|ENSMUSG00000038564.7|intraflagellar transport 172
mm10_v2_chr12_-_21417591_21417637	0.700107	Rfx3_Rfx1_Rfx4	ENSMUST00000135088.1|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm10_v2_chr7_+_126950687_126950729	0.699395	Rfx3_Rfx1_Rfx4	ENSMUST00000106333.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2
mm10_v2_chr7_+_44857137_44857190	0.698709	Rfx3_Rfx1_Rfx4	ENSMUST00000107876.1|Pnkp|ENSMUSG00000002963.10|polynucleotide kinase 3'- phosphatase 	ENSMUST00000003044.7|Pnkp|ENSMUSG00000002963.10|polynucleotide kinase 3'- phosphatase 	ENSMUST00000154968.1|Pnkp|ENSMUSG00000002963.10|polynucleotide kinase 3'- phosphatase
mm10_v2_chr16_-_16829276_16829349	0.698257	Rfx3_Rfx1_Rfx4	ENSMUST00000023468.5|Spag6|ENSMUSG00000022783.5|sperm associated antigen 6
mm10_v2_chr10_+_119992916_119992958	0.698247	Rfx3_Rfx1_Rfx4	ENSMUST00000105261.2|Grip1|ENSMUSG00000034813.10|glutamate receptor interacting protein 1
mm10_v2_chr5_+_130187158_130187166	0.697919	Rfx3_Rfx1_Rfx4	ENSMUST00000119027.1|Rabgef1|ENSMUSG00000025340.8|RAB guanine nucleotide exchange factor (GEF) 1 	ENSMUST00000026390.7|Rabgef1|ENSMUSG00000025340.8|RAB guanine nucleotide exchange factor (GEF) 1
mm10_v2_chr4_-_43429117_43429139	0.696757	Rfx3_Rfx1_Rfx4	ENSMUST00000171134.2|Fam166b|ENSMUSG00000042788.6|family with sequence similarity 166, member B 	ENSMUST00000052829.3|Fam166b|ENSMUSG00000042788.6|family with sequence similarity 166, member B
mm10_v2_chr5_+_35583018_35583110	0.696599	Rfx3_Rfx1_Rfx4	ENSMUST00000068947.7|Acox3|ENSMUSG00000029098.10|acyl-Coenzyme A oxidase 3, pristanoyl 	ENSMUST00000114237.1|Acox3|ENSMUSG00000029098.10|acyl-Coenzyme A oxidase 3, pristanoyl 	ENSMUST00000156125.1|Acox3|ENSMUSG00000029098.10|acyl-Coenzyme A oxidase 3, pristanoyl 	ENSMUST00000068563.5|Acox3|ENSMUSG00000029098.10|acyl-Coenzyme A oxidase 3, pristanoyl
mm10_v2_chr15_-_75841907_75841932	0.691357	Rfx3_Rfx1_Rfx4	ENSMUST00000100538.2|Zc3h3|ENSMUSG00000075600.2|zinc finger CCCH type containing 3
mm10_v2_chr5_+_136987019_136987019	0.690486	Rfx3_Rfx1_Rfx4	ENSMUST00000004968.4|Plod3|ENSMUSG00000004846.4|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
mm10_v2_chr3_+_156562141_156562196	0.689726	Rfx3_Rfx1_Rfx4	ENSMUST00000175773.1|Negr1|ENSMUSG00000040037.7|neuronal growth regulator 1
mm10_v2_chr11_-_67965631_67965663	0.684518	Rfx3_Rfx1_Rfx4	ENSMUST00000021287.5|Wdr16|ENSMUSG00000020904.5|WD repeat domain 16 	ENSMUST00000126766.1|Wdr16|ENSMUSG00000020904.5|WD repeat domain 16
mm10_v2_chr6_-_138658444_138658456	0.681276	Rfx3_Rfx1_Rfx4	ENSMUST00000054786.4|Igbp1b|ENSMUSG00000046717.4|immunoglobulin (CD79A) binding protein 1b
mm10_v2_chr2_-_106003549_106003549	0.680597	Rfx3_Rfx1_Rfx4	ENSMUST00000102555.4|Dnajc24|ENSMUSG00000027166.8|DnaJ (Hsp40) homolog, subfamily C, member 24
mm10_v2_chr10_+_119992962_119993070	0.66748	Rfx3_Rfx1_Rfx4	ENSMUST00000154238.1|Grip1|ENSMUSG00000034813.10|glutamate receptor interacting protein 1
mm10_v2_chr2_-_134644019_134644042	0.658103	Rfx3_Rfx1_Rfx4	ENSMUST00000110120.1|Tmx4|ENSMUSG00000034723.5|thioredoxin-related transmembrane protein 4
mm10_v2_chr3_+_65109343_65109420	0.658008	Rfx3_Rfx1_Rfx4	ENSMUST00000159525.1|Kcnab1|ENSMUSG00000027827.10|potassium voltage-gated channel, shaker-related subfamily, beta member 1 	ENSMUST00000049230.8|Kcnab1|ENSMUSG00000027827.10|potassium voltage-gated channel, shaker-related subfamily, beta member 1
mm10_v2_chr15_+_59315030_59315087	0.657783	Rfx3_Rfx1_Rfx4	ENSMUST00000022977.7|Sqle|ENSMUSG00000022351.8|squalene epoxidase
mm10_v2_chr7_+_126950518_126950584	0.657344	Rfx3_Rfx1_Rfx4	ENSMUST00000106335.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2 	ENSMUST00000146017.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2
mm10_v2_chr1_+_152766540_152766551	0.657294	Rfx3_Rfx1_Rfx4	ENSMUST00000077755.5|Arpc5|ENSMUSG00000008475.7|actin related protein 2/3 complex, subunit 5 	ENSMUST00000097536.4|Arpc5|ENSMUSG00000008475.7|actin related protein 2/3 complex, subunit 5
mm10_v2_chr14_-_32085595_32085639	0.655323	Rfx3_Rfx1_Rfx4	ENSMUST00000022461.4|Dph3|ENSMUSG00000021905.7|diphthamine biosynthesis 3 	ENSMUST00000067955.5|Dph3|ENSMUSG00000021905.7|diphthamine biosynthesis 3 	ENSMUST00000124303.1|Dph3|ENSMUSG00000021905.7|diphthamine biosynthesis 3 	ENSMUST00000112000.1|Dph3|ENSMUSG00000021905.7|diphthamine biosynthesis 3
mm10_v2_chr1_+_191036812_191036825	0.653379	Rfx3_Rfx1_Rfx4	ENSMUST00000077889.6|1700022P22Rik|ENSMUSG00000057072.6|RIKEN cDNA 1700022P22 gene
mm10_v2_chr15_+_25752860_25752979	0.653108	Rfx3_Rfx1_Rfx4	ENSMUST00000022882.5|Myo10|ENSMUSG00000022272.11|myosin X 	ENSMUST00000135173.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr11_-_103267405_103267472	0.651049	Rfx3_Rfx1_Rfx4	ENSMUST00000021324.2|Map3k14|ENSMUSG00000020941.7|mitogen-activated protein kinase kinase kinase 14
mm10_v2_chr2_-_131174653_131174653	0.650968	Rfx3_Rfx1_Rfx4	ENSMUST00000127987.1|Spef1|ENSMUSG00000027329.3|sperm flagellar 1
mm10_v2_chr16_-_64771146_64771184	0.650917	Rfx3_Rfx1_Rfx4	ENSMUST00000076991.6|4930453N24Rik|ENSMUSG00000059920.9|RIKEN cDNA 4930453N24 gene
mm10_v2_chr17_+_24549950_24550062	0.650432	Rfx3_Rfx1_Rfx4	ENSMUST00000035565.3|Pkd1|ENSMUSG00000032855.5|polycystic kidney disease 1 homolog
mm10_v2_chr5_+_30281377_30281447	0.645669	Rfx3_Rfx1_Rfx4	ENSMUST00000101448.3|Drc1|ENSMUSG00000073102.3|dynein regulatory complex subunit 1
mm10_v2_chr5_+_38039224_38039299	0.645518	Rfx3_Rfx1_Rfx4	ENSMUST00000031008.6|Stx18|ENSMUSG00000029125.8|syntaxin 18 	ENSMUST00000042146.8|Stx18|ENSMUSG00000029125.8|syntaxin 18 	ENSMUST00000154929.1|Stx18|ENSMUSG00000029125.8|syntaxin 18
mm10_v2_chr9_-_50728067_50728129	0.642741	Rfx3_Rfx1_Rfx4	ENSMUST00000117646.1|Dixdc1|ENSMUSG00000032064.11|DIX domain containing 1
mm10_v2_chr17_+_56584973_56585059	0.638507	Rfx3_Rfx1_Rfx4	ENSMUST00000182533.1|Safb|ENSMUSG00000071054.6|scaffold attachment factor B 	ENSMUST00000182800.1|Safb|ENSMUSG00000071054.6|scaffold attachment factor B 	ENSMUST00000095224.4|Safb|ENSMUSG00000071054.6|scaffold attachment factor B
mm10_v2_chr1_-_187215421_187215451	0.627458	Rfx3_Rfx1_Rfx4	ENSMUST00000110945.3|Spata17|ENSMUSG00000026611.11|spermatogenesis associated 17 	ENSMUST00000183931.1|Spata17|ENSMUSG00000026611.11|spermatogenesis associated 17 	ENSMUST00000027908.6|Spata17|ENSMUSG00000026611.11|spermatogenesis associated 17
mm10_v2_chr6_+_88084473_88084527	0.626663	Rfx3_Rfx1_Rfx4	ENSMUST00000032143.6|Rpn1|ENSMUSG00000030062.6|ribophorin I
mm10_v2_chr1_+_75236439_75236469	0.625613	Rfx3_Rfx1_Rfx4	ENSMUST00000082158.6|Dnajb2|ENSMUSG00000026203.10|DnaJ (Hsp40) homolog, subfamily B, member 2 	ENSMUST00000055223.7|Dnajb2|ENSMUSG00000026203.10|DnaJ (Hsp40) homolog, subfamily B, member 2
mm10_v2_chr8_-_105827190_105827350	0.623555	Rfx3_Rfx1_Rfx4	ENSMUST00000041400.5|Ranbp10|ENSMUSG00000037415.5|RAN binding protein 10
mm10_v2_chr11_-_59839745_59839763	0.619592	Rfx3_Rfx1_Rfx4	ENSMUST00000141415.1|Cops3|ENSMUSG00000019373.5|COP9 (constitutive photomorphogenic) homolog, subunit 3 (Arabidopsis thaliana)
mm10_v2_chr12_-_21417526_21417588	0.619092	Rfx3_Rfx1_Rfx4	ENSMUST00000049531.9|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide 	ENSMUST00000155480.1|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm10_v2_chr4_-_106617232_106617240	0.613816	Rfx3_Rfx1_Rfx4	ENSMUST00000106788.1|BC055111|ENSMUSG00000054362.3|cDNA sequence BC055111
mm10_v2_chr7_+_126950837_126950966	0.61355	Rfx3_Rfx1_Rfx4	ENSMUST00000106332.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2
mm10_v2_chr2_+_90904740_90904778	0.613274	Rfx3_Rfx1_Rfx4	ENSMUST00000111464.1|Kbtbd4|ENSMUSG00000005505.6|kelch repeat and BTB (POZ) domain containing 4 	ENSMUST00000090682.3|Kbtbd4|ENSMUSG00000005505.6|kelch repeat and BTB (POZ) domain containing 4
mm10_v2_chr4_-_12087912_12088011	0.611964	Rfx3_Rfx1_Rfx4	ENSMUST00000050686.3|Tmem67|ENSMUSG00000049488.8|transmembrane protein 67
mm10_v2_chr6_-_126921804_126921839	0.609445	Rfx3_Rfx1_Rfx4	ENSMUST00000078521.5|Dyrk4|ENSMUSG00000030345.10|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4
mm10_v2_chr11_+_83302641_83302803	0.603535	Rfx3_Rfx1_Rfx4	ENSMUST00000176430.1|Ap2b1|ENSMUSG00000035152.8|adaptor-related protein complex 2, beta 1 subunit 	ENSMUST00000065692.7|Ap2b1|ENSMUSG00000035152.8|adaptor-related protein complex 2, beta 1 subunit
mm10_v2_chr15_+_75993756_75993832	0.60091	Rfx3_Rfx1_Rfx4	ENSMUST00000089669.4|Mapk15|ENSMUSG00000063704.6|mitogen-activated protein kinase 15
mm10_v2_chr9_-_72491939_72492212	0.599018	Rfx3_Rfx1_Rfx4	ENSMUST00000185151.1|Tex9|ENSMUSG00000090626.3|testis expressed gene 9 	ENSMUST00000085358.5|Tex9|ENSMUSG00000090626.3|testis expressed gene 9 	ENSMUST00000184125.1|Tex9|ENSMUSG00000090626.3|testis expressed gene 9 	ENSMUST00000183574.1|Tex9|ENSMUSG00000090626.3|testis expressed gene 9 	ENSMUST00000184831.1|Tex9|ENSMUSG00000090626.3|testis expressed gene 9
mm10_v2_chr7_-_140882274_140882330	0.595558	Rfx3_Rfx1_Rfx4	ENSMUST00000026559.7|Sirt3|ENSMUSG00000025486.10|sirtuin 3
mm10_v2_chr1_+_182124737_182124800	0.593974	Rfx3_Rfx1_Rfx4	ENSMUST00000111018.1|Srp9|ENSMUSG00000026511.6|signal recognition particle 9 	ENSMUST00000027792.5|Srp9|ENSMUSG00000026511.6|signal recognition particle 9
mm10_v2_chr15_+_100761741_100761797	0.590716	Rfx3_Rfx1_Rfx4	ENSMUST00000023776.6|Slc4a8|ENSMUSG00000023032.6|solute carrier family 4 (anion exchanger), member 8
mm10_v2_chr4_-_125127817_125127843	0.587768	Rfx3_Rfx1_Rfx4	ENSMUST00000036188.7|Zc3h12a|ENSMUSG00000042677.7|zinc finger CCCH type containing 12A
mm10_v2_chr1_+_133131143_133131283	0.586687	Rfx3_Rfx1_Rfx4	ENSMUST00000052529.3|Ppp1r15b|ENSMUSG00000046062.5|protein phosphatase 1, regulatory (inhibitor) subunit 15b
mm10_v2_chr16_-_3909192_3909192	0.585438	Rfx3_Rfx1_Rfx4	ENSMUST00000181699.1|1700016D08Rik|ENSMUSG00000097179.1|RIKEN cDNA 1700016D08 gene
mm10_v2_chr4_+_40722461_40722512	0.577074	Rfx3_Rfx1_Rfx4	ENSMUST00000030118.3|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1
mm10_v2_chr18_-_22850738_22850759	0.576549	Rfx3_Rfx1_Rfx4	ENSMUST00000092015.4|Nol4|ENSMUSG00000041923.9|nucleolar protein 4 	ENSMUST00000069215.6|Nol4|ENSMUSG00000041923.9|nucleolar protein 4
mm10_v2_chr6_+_38433913_38433965	0.575814	Rfx3_Rfx1_Rfx4	ENSMUST00000160583.1|Ubn2|ENSMUSG00000038538.11|ubinuclein 2
mm10_v2_chr8_+_45627946_45627975	0.575466	Rfx3_Rfx1_Rfx4	ENSMUST00000145458.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr15_+_59315088_59315128	0.573167	Rfx3_Rfx1_Rfx4	ENSMUST00000100640.4|Sqle|ENSMUSG00000022351.8|squalene epoxidase
mm10_v2_chr11_+_109650921_109651003	0.567798	Rfx3_Rfx1_Rfx4	ENSMUST00000049527.6|Prkar1a|ENSMUSG00000020612.10|protein kinase, cAMP dependent regulatory, type I, alpha
mm10_v2_chr5_-_41708135_41708170	0.565404	Rfx3_Rfx1_Rfx4	ENSMUST00000031011.8|Rab28|ENSMUSG00000029128.9|RAB28, member RAS oncogene family
mm10_v2_chr18_+_63708689_63708730	0.562861	Rfx3_Rfx1_Rfx4	ENSMUST00000072726.5|Wdr7|ENSMUSG00000040560.9|WD repeat domain 7
mm10_v2_chrX_+_20364481_20364616	0.561483	Rfx3_Rfx1_Rfx4	ENSMUST00000033372.6|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human) 	ENSMUST00000115391.1|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human) 	ENSMUST00000115387.1|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human)
mm10_v2_chr1_+_88211956_88211985	0.560171	Rfx3_Rfx1_Rfx4	ENSMUST00000073049.6|Ugt1a1|ENSMUSG00000089960.1|UDP glucuronosyltransferase 1 family, polypeptide A1
mm10_v2_chr2_-_5063996_5064048	0.559969	Rfx3_Rfx1_Rfx4	ENSMUST00000114996.1|Optn|ENSMUSG00000026672.5|optineurin
mm10_v2_chr5_+_118027743_118027800	0.555599	Rfx3_Rfx1_Rfx4	ENSMUST00000031304.7|Tesc|ENSMUSG00000029359.7|tescalcin
mm10_v2_chr11_+_45980309_45980337	0.555331	Rfx3_Rfx1_Rfx4	ENSMUST00000049038.3|Sox30|ENSMUSG00000040489.5|SRY-box containing gene 30
mm10_v2_chr1_-_58695944_58695989	0.553389	Rfx3_Rfx1_Rfx4	ENSMUST00000055313.7|Als2cr12|ENSMUSG00000047528.7|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12 (human)
mm10_v2_chr10_-_80329426_80329498	0.55243	Rfx3_Rfx1_Rfx4	ENSMUST00000020340.8|Pcsk4|ENSMUSG00000020131.8|proprotein convertase subtilisin/kexin type 4
mm10_v2_chr4_+_134102581_134102618	0.550321	Rfx3_Rfx1_Rfx4	ENSMUST00000074690.4|Ubxn11|ENSMUSG00000012126.10|UBX domain protein 11 	ENSMUST00000070246.2|Ubxn11|ENSMUSG00000012126.10|UBX domain protein 11 	ENSMUST00000156750.1|Ubxn11|ENSMUSG00000012126.10|UBX domain protein 11
mm10_v2_chr5_+_108369858_108369858	0.548517	Rfx3_Rfx1_Rfx4	ENSMUST00000100944.2|Gm10419|ENSMUSG00000072769.2|predicted gene 10419
mm10_v2_chr7_-_99141068_99141149	0.54592	Rfx3_Rfx1_Rfx4	ENSMUST00000037968.8|Uvrag|ENSMUSG00000035354.8|UV radiation resistance associated gene
mm10_v2_chr14_+_31641051_31641082	0.544004	Rfx3_Rfx1_Rfx4	ENSMUST00000090147.6|Btd|ENSMUSG00000021900.10|biotinidase
mm10_v2_chr4_+_130107556_130107606	0.542021	Rfx3_Rfx1_Rfx4	ENSMUST00000030563.5|Pef1|ENSMUSG00000028779.10|penta-EF hand domain containing 1
mm10_v2_chr5_-_143732273_143732316	0.541822	Rfx3_Rfx1_Rfx4	ENSMUST00000053287.5|Usp42|ENSMUSG00000051306.7|ubiquitin specific peptidase 42
mm10_v2_chr6_+_30509849_30509889	0.535519	Rfx3_Rfx1_Rfx4	ENSMUST00000031797.4|Ssmem1|ENSMUSG00000029784.7|serine-rich single-pass membrane protein 1
mm10_v2_chr19_+_6363896_6363941	0.533261	Rfx3_Rfx1_Rfx4	ENSMUST00000113487.1|Sf1|ENSMUSG00000024949.11|splicing factor 1
mm10_v2_chr12_+_35047180_35047230	0.532391	Rfx3_Rfx1_Rfx4	ENSMUST00000048519.9|Snx13|ENSMUSG00000020590.9|sorting nexin 13 	ENSMUST00000163677.1|Snx13|ENSMUSG00000020590.9|sorting nexin 13
mm10_v2_chr16_+_49699198_49699304	0.524088	Rfx3_Rfx1_Rfx4	ENSMUST00000046777.4|Ift57|ENSMUSG00000032965.4|intraflagellar transport 57 	ENSMUST00000142682.1|Ift57|ENSMUSG00000032965.4|intraflagellar transport 57
mm10_v2_chr2_-_26092149_26092177	0.523095	Rfx3_Rfx1_Rfx4	ENSMUST00000114159.2|Nacc2|ENSMUSG00000026932.8|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm10_v2_chr17_+_80207460_80207517	0.519466	Rfx3_Rfx1_Rfx4	ENSMUST00000134652.1|Ttc39d|ENSMUSG00000046196.4|tetratricopeptide repeat domain 39D
mm10_v2_chr8_-_94918012_94918098	0.517453	Rfx3_Rfx1_Rfx4	ENSMUST00000077955.5|Ccdc102a|ENSMUSG00000063605.5|coiled-coil domain containing 102A
mm10_v2_chr19_-_42086338_42086375	0.51506	Rfx3_Rfx1_Rfx4	ENSMUST00000051772.8|Morn4|ENSMUSG00000049670.8|MORN repeat containing 4
mm10_v2_chr7_-_126976092_126976105	0.51477	Rfx3_Rfx1_Rfx4	ENSMUST00000181859.1|D830044I16Rik|ENSMUSG00000097075.1|RIKEN cDNA D830044I16 gene
mm10_v2_chr2_-_75978164_75978206	0.514494	Rfx3_Rfx1_Rfx4	ENSMUST00000099995.3|Ttc30a2|ENSMUSG00000075272.3|tetratricopeptide repeat domain 30A2
mm10_v2_chr11_-_101425330_101425388	0.513484	Rfx3_Rfx1_Rfx4	ENSMUST00000103102.3|Ptges3l|ENSMUSG00000097487.1|prostaglandin E synthase 3 (cytosolic)-like
mm10_v2_chr19_-_57197435_57197460	0.50824	Rfx3_Rfx1_Rfx4	ENSMUST00000111550.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr2_+_27009936_27010082	0.507677	Rfx3_Rfx1_Rfx4	ENSMUST00000133807.1|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1
mm10_v2_chr9_+_98563704_98563737	0.507569	Rfx3_Rfx1_Rfx4	ENSMUST00000035033.5|Copb2|ENSMUSG00000032458.5|coatomer protein complex, subunit beta 2 (beta prime)
mm10_v2_chr3_-_37312418_37312465	0.503805	Rfx3_Rfx1_Rfx4	ENSMUST00000075537.6|Cetn4|ENSMUSG00000045031.12|centrin 4 	ENSMUST00000071400.6|Cetn4|ENSMUSG00000045031.12|centrin 4 	ENSMUST00000102955.4|Cetn4|ENSMUSG00000045031.12|centrin 4 	ENSMUST00000140956.1|Cetn4|ENSMUSG00000045031.12|centrin 4
mm10_v2_chr2_+_166792525_166792536	0.503203	Rfx3_Rfx1_Rfx4	ENSMUST00000065753.1|Trp53rk|ENSMUSG00000042854.9|transformation related protein 53 regulating kinase
mm10_v2_chr5_-_136986829_136986901	0.502992	Rfx3_Rfx1_Rfx4	ENSMUST00000034953.7|Znhit1|ENSMUSG00000059518.8|zinc finger, HIT domain containing 1 	ENSMUST00000085941.5|Znhit1|ENSMUSG00000059518.8|zinc finger, HIT domain containing 1
mm10_v2_chr5_+_138171997_138172021	0.500324	Rfx3_Rfx1_Rfx4	ENSMUST00000019662.4|Ap4m1|ENSMUSG00000019518.4|adaptor-related protein complex AP-4, mu 1 	ENSMUST00000151318.1|Ap4m1|ENSMUSG00000019518.4|adaptor-related protein complex AP-4, mu 1
mm10_v2_chr1_-_171287916_171287929	0.495738	Rfx3_Rfx1_Rfx4	ENSMUST00000111305.1|Usp21|ENSMUSG00000053483.7|ubiquitin specific peptidase 21
mm10_v2_chr11_+_108587077_108587110	0.492607	Rfx3_Rfx1_Rfx4	ENSMUST00000146912.2|Cep112|ENSMUSG00000020728.11|centrosomal protein 112
mm10_v2_chr19_-_10001625_10001633	0.490428	Rfx3_Rfx1_Rfx4	ENSMUST00000117346.1|Best1|ENSMUSG00000037418.5|bestrophin 1
mm10_v2_chr15_-_98763195_98763220	0.486781	Rfx3_Rfx1_Rfx4	ENSMUST00000053183.9|Arf3|ENSMUSG00000051853.8|ADP-ribosylation factor 3
mm10_v2_chr6_+_55203381_55203459	0.486712	Rfx3_Rfx1_Rfx4	ENSMUST00000053094.7|Fam188b|ENSMUSG00000038022.9|family with sequence similarity 188, member B
mm10_v2_chr11_+_97801917_97801998	0.485211	Rfx3_Rfx1_Rfx4	ENSMUST00000127033.2|Lasp1|ENSMUSG00000038366.9|LIM and SH3 protein 1
mm10_v2_chr8_-_25597459_25597517	0.484091	Rfx3_Rfx1_Rfx4	ENSMUST00000079160.6|Letm2|ENSMUSG00000037363.8|leucine zipper-EF-hand containing transmembrane protein 2
mm10_v2_chr9_-_50727921_50728008	0.483112	Rfx3_Rfx1_Rfx4	ENSMUST00000118707.1|Dixdc1|ENSMUSG00000032064.11|DIX domain containing 1 	ENSMUST00000034566.8|Dixdc1|ENSMUSG00000032064.11|DIX domain containing 1
mm10_v2_chr11_+_109650574_109650579	0.481932	Rfx3_Rfx1_Rfx4	ENSMUST00000106676.1|Prkar1a|ENSMUSG00000020612.10|protein kinase, cAMP dependent regulatory, type I, alpha
mm10_v2_chr7_-_80232479_80232498	0.481795	Rfx3_Rfx1_Rfx4	ENSMUST00000123279.1|Cib1|ENSMUSG00000030538.9|calcium and integrin binding 1 (calmyrin)
mm10_v2_chr15_+_98571004_98571026	0.481699	Rfx3_Rfx1_Rfx4	ENSMUST00000023728.6|4930415O20Rik|ENSMUSG00000022993.6|RIKEN cDNA 4930415O20 gene
mm10_v2_chr3_+_105870858_105870895	0.480994	Rfx3_Rfx1_Rfx4	ENSMUST00000164730.1|Adora3|ENSMUSG00000000562.4|adenosine A3 receptor
mm10_v2_chr2_+_71981184_71981287	0.477468	Rfx3_Rfx1_Rfx4	ENSMUST00000090826.5|Rapgef4|ENSMUSG00000049044.10|Rap guanine nucleotide exchange factor (GEF) 4 	ENSMUST00000102698.3|Rapgef4|ENSMUSG00000049044.10|Rap guanine nucleotide exchange factor (GEF) 4
mm10_v2_chr14_-_31640878_31640980	0.475368	Rfx3_Rfx1_Rfx4	ENSMUST00000167066.1|Hacl1|ENSMUSG00000021884.11|2-hydroxyacyl-CoA lyase 1 	ENSMUST00000127204.2|Hacl1|ENSMUSG00000021884.11|2-hydroxyacyl-CoA lyase 1 	ENSMUST00000022437.8|Hacl1|ENSMUSG00000021884.11|2-hydroxyacyl-CoA lyase 1
mm10_v2_chr16_-_91069142_91069159	0.474085	Rfx3_Rfx1_Rfx4	ENSMUST00000035689.1|4932438H23Rik|ENSMUSG00000039851.5|RIKEN cDNA 4932438H23 gene 	ENSMUST00000114076.1|4932438H23Rik|ENSMUSG00000039851.5|RIKEN cDNA 4932438H23 gene
mm10_v2_chr2_+_153161303_153161339	0.469384	Rfx3_Rfx1_Rfx4	ENSMUST00000089027.2|Tm9sf4|ENSMUSG00000068040.4|transmembrane 9 superfamily protein member 4
mm10_v2_chr11_+_87853207_87853249	0.468992	Rfx3_Rfx1_Rfx4	ENSMUST00000038196.6|Mks1|ENSMUSG00000034121.6|Meckel syndrome, type 1
mm10_v2_chr7_-_13054665_13054764	0.468237	Rfx3_Rfx1_Rfx4	ENSMUST00000182515.1|Mzf1|ENSMUSG00000030380.10|myeloid zinc finger 1 	ENSMUST00000069289.8|Mzf1|ENSMUSG00000030380.10|myeloid zinc finger 1
mm10_v2_chr4_-_152477433_152477549	0.467855	Rfx3_Rfx1_Rfx4	ENSMUST00000159186.1|Kcnab2|ENSMUSG00000028931.5|potassium voltage-gated channel, shaker-related subfamily, beta member 2 	ENSMUST00000162017.1|Kcnab2|ENSMUSG00000028931.5|potassium voltage-gated channel, shaker-related subfamily, beta member 2 	ENSMUST00000030768.2|Kcnab2|ENSMUSG00000028931.5|potassium voltage-gated channel, shaker-related subfamily, beta member 2
mm10_v2_chr6_+_83156401_83156451	0.466535	Rfx3_Rfx1_Rfx4	ENSMUST00000032106.4|1700003E16Rik|ENSMUSG00000030030.4|RIKEN cDNA 1700003E16 gene
mm10_v2_chr4_-_62408618_62408643	0.461268	Rfx3_Rfx1_Rfx4	ENSMUST00000107459.1|Cdc26|ENSMUSG00000066149.5|cell division cycle 26 	ENSMUST00000084525.5|Cdc26|ENSMUSG00000066149.5|cell division cycle 26
mm10_v2_chr4_+_152478142_152478183	0.456525	Rfx3_Rfx1_Rfx4	ENSMUST00000081393.3|Nphp4|ENSMUSG00000039577.11|nephronophthisis 4 (juvenile) homolog (human)
mm10_v2_chr10_+_83722865_83722947	0.454483	Rfx3_Rfx1_Rfx4	ENSMUST00000150459.1|1500009L16Rik|ENSMUSG00000087651.2|RIKEN cDNA 1500009L16 gene
mm10_v2_chr14_+_48446340_48446429	0.453126	Rfx3_Rfx1_Rfx4	ENSMUST00000111735.2|Tmem260|ENSMUSG00000036339.11|transmembrane protein 260
mm10_v2_chr9_-_122950960_122951006	0.452849	Rfx3_Rfx1_Rfx4	ENSMUST00000035154.3|1110059G10Rik|ENSMUSG00000032551.6|RIKEN cDNA 1110059G10 gene
mm10_v2_chr3_-_95133989_95134017	0.452687	Rfx3_Rfx1_Rfx4	ENSMUST00000172572.2|Scnm1|ENSMUSG00000092607.3|sodium channel modifier 1 	ENSMUST00000173462.2|Scnm1|ENSMUSG00000092607.3|sodium channel modifier 1
mm10_v2_chr17_-_24650270_24650311	0.452141	Rfx3_Rfx1_Rfx4	ENSMUST00000002572.4|Slc9a3r2|ENSMUSG00000002504.8|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
mm10_v2_chr18_+_31609512_31609512	0.450254	Rfx3_Rfx1_Rfx4	ENSMUST00000164667.1|B930094E09Rik|ENSMUSG00000092124.1|RIKEN cDNA B930094E09 gene
mm10_v2_chr4_-_123904826_123904844	0.44592	Rfx3_Rfx1_Rfx4	ENSMUST00000181292.1|Gm26606|ENSMUSG00000097337.1|predicted gene, 26606
mm10_v2_chr13_+_42681513_42681564	0.445576	Rfx3_Rfx1_Rfx4	ENSMUST00000149235.1|Phactr1|ENSMUSG00000054728.10|phosphatase and actin regulator 1
mm10_v2_chr6_+_115853470_115853598	0.444159	Rfx3_Rfx1_Rfx4	ENSMUST00000112925.1|Ift122|ENSMUSG00000030323.7|intraflagellar transport 122 	ENSMUST00000112923.1|Ift122|ENSMUSG00000030323.7|intraflagellar transport 122 	ENSMUST00000038234.6|Ift122|ENSMUSG00000030323.7|intraflagellar transport 122
mm10_v2_chr11_-_48816936_48816961	0.444016	Rfx3_Rfx1_Rfx4	ENSMUST00000140800.1|Trim41|ENSMUSG00000040365.8|tripartite motif-containing 41
mm10_v2_chr18_-_78206408_78206440	0.440558	Rfx3_Rfx1_Rfx4	ENSMUST00000163367.1|Slc14a2|ENSMUSG00000024552.9|solute carrier family 14 (urea transporter), member 2
mm10_v2_chr10_+_20952547_20952593	0.43954	Rfx3_Rfx1_Rfx4	ENSMUST00000105525.4|Ahi1|ENSMUSG00000019986.10|Abelson helper integration site 1
mm10_v2_chr1_-_171287931_171287991	0.437188	Rfx3_Rfx1_Rfx4	ENSMUST00000111306.3|Usp21|ENSMUSG00000053483.7|ubiquitin specific peptidase 21 	ENSMUST00000065941.5|Usp21|ENSMUSG00000053483.7|ubiquitin specific peptidase 21
mm10_v2_chr11_+_53567361_53567526	0.437055	Rfx3_Rfx1_Rfx4	ENSMUST00000057330.8|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A 	ENSMUST00000120613.2|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A 	ENSMUST00000173744.1|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A 	ENSMUST00000118353.2|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A
mm10_v2_chr4_-_62208426_62208487	0.435368	Rfx3_Rfx1_Rfx4	ENSMUST00000068822.3|Zfp37|ENSMUSG00000028389.4|zinc finger protein 37
mm10_v2_chr4_-_127330799_127330845	0.435306	Rfx3_Rfx1_Rfx4	ENSMUST00000046532.3|Gjb3|ENSMUSG00000042367.6|gap junction protein, beta 3
mm10_v2_chr4_+_138434647_138434748	0.428727	Rfx3_Rfx1_Rfx4	ENSMUST00000044058.4|Mul1|ENSMUSG00000041241.6|mitochondrial ubiquitin ligase activator of NFKB 1 	ENSMUST00000105813.1|Mul1|ENSMUSG00000041241.6|mitochondrial ubiquitin ligase activator of NFKB 1 	ENSMUST00000105815.1|Mul1|ENSMUSG00000041241.6|mitochondrial ubiquitin ligase activator of NFKB 1
mm10_v2_chr17_+_32506446_32506473	0.428267	Rfx3_Rfx1_Rfx4	ENSMUST00000165999.1|Cyp4f17|ENSMUSG00000091586.1|cytochrome P450, family 4, subfamily f, polypeptide 17
mm10_v2_chr6_+_48395586_48395646	0.426397	Rfx3_Rfx1_Rfx4	ENSMUST00000114571.1|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1 	ENSMUST00000114572.3|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1 	ENSMUST00000031815.5|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1
mm10_v2_chr16_-_59639124_59639191	0.423354	Rfx3_Rfx1_Rfx4	ENSMUST00000149797.1|Arl6|ENSMUSG00000022722.12|ADP-ribosylation factor-like 6 	ENSMUST00000023405.9|Arl6|ENSMUSG00000022722.12|ADP-ribosylation factor-like 6
mm10_v2_chr2_-_118549668_118549687	0.422436	Rfx3_Rfx1_Rfx4	ENSMUST00000090219.6|Bmf|ENSMUSG00000040093.9|BCL2 modifying factor
mm10_v2_chr7_-_67222412_67222458	0.421134	Rfx3_Rfx1_Rfx4	ENSMUST00000181631.1|1700112J16Rik|ENSMUSG00000097527.1|RIKEN cDNA 1700112J16 gene
mm10_v2_chr10_+_117045341_117045363	0.414725	Rfx3_Rfx1_Rfx4	ENSMUST00000073834.4|Lrrc10|ENSMUSG00000060187.4|leucine rich repeat containing 10
mm10_v2_chr5_+_134099704_134099760	0.407849	Rfx3_Rfx1_Rfx4	ENSMUST00000016088.8|Gatsl2|ENSMUSG00000015944.8|GATS protein-like 2
mm10_v2_chr8_+_120488416_120488490	0.407149	Rfx3_Rfx1_Rfx4	ENSMUST00000034279.9|Gse1|ENSMUSG00000031822.12|genetic suppressor element 1
mm10_v2_chr9_+_104569754_104569793	0.40463	Rfx3_Rfx1_Rfx4	ENSMUST00000077190.6|Cpne4|ENSMUSG00000032564.9|copine IV
mm10_v2_chr3_+_108591279_108591414	0.400642	Rfx3_Rfx1_Rfx4	ENSMUST00000051145.8|Wdr47|ENSMUSG00000040389.9|WD repeat domain 47 	ENSMUST00000139626.1|Wdr47|ENSMUSG00000040389.9|WD repeat domain 47
mm10_v2_chr6_+_145211134_145211222	0.3996	Rfx3_Rfx1_Rfx4	ENSMUST00000111725.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111726.3|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000039729.3|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111723.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111724.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111721.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111719.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5
mm10_v2_chr16_-_17561240_17561254	0.399462	Rfx3_Rfx1_Rfx4	ENSMUST00000065125.5|4930451C15Rik|ENSMUSG00000022759.7|RIKEN cDNA 4930451C15 gene 	ENSMUST00000100123.3|4930451C15Rik|ENSMUSG00000022759.7|RIKEN cDNA 4930451C15 gene 	ENSMUST00000023442.6|4930451C15Rik|ENSMUSG00000022759.7|RIKEN cDNA 4930451C15 gene
mm10_v2_chr5_-_92675253_92675287	0.398483	Rfx3_Rfx1_Rfx4	ENSMUST00000151180.1|Ccdc158|ENSMUSG00000050050.10|coiled-coil domain containing 158 	ENSMUST00000150359.1|Ccdc158|ENSMUSG00000050050.10|coiled-coil domain containing 158
mm10_v2_chr7_-_30232186_30232272	0.397368	Rfx3_Rfx1_Rfx4	ENSMUST00000006254.5|Tbcb|ENSMUSG00000006095.6|tubulin folding cofactor B
mm10_v2_chr9_-_122950922_122950953	0.396024	Rfx3_Rfx1_Rfx4	ENSMUST00000118422.1|1110059G10Rik|ENSMUSG00000032551.6|RIKEN cDNA 1110059G10 gene
mm10_v2_chr15_-_71727815_71727848	0.394695	Rfx3_Rfx1_Rfx4	ENSMUST00000022953.8|Fam135b|ENSMUSG00000036800.7|family with sequence similarity 135, member B
mm10_v2_chr9_+_104569671_104569683	0.393162	Rfx3_Rfx1_Rfx4	ENSMUST00000057742.8|Cpne4|ENSMUSG00000032564.9|copine IV
mm10_v2_chr12_-_86726439_86726475	0.391968	Rfx3_Rfx1_Rfx4	ENSMUST00000021682.8|Angel1|ENSMUSG00000021257.8|angel homolog 1 (Drosophila)
mm10_v2_chr2_-_131175201_131175201	0.388331	Rfx3_Rfx1_Rfx4	ENSMUST00000110218.2|Spef1|ENSMUSG00000027329.3|sperm flagellar 1
mm10_v2_chr3_+_106684943_106685021	0.387269	Rfx3_Rfx1_Rfx4	ENSMUST00000098751.3|Lrif1|ENSMUSG00000056260.9|ligand dependent nuclear receptor interacting factor 1
mm10_v2_chr15_+_103272893_103272911	0.3846	Rfx3_Rfx1_Rfx4	ENSMUST00000100162.3|Copz1|ENSMUSG00000060992.8|coatomer protein complex, subunit zeta 1
mm10_v2_chr1_+_187215737_187215748	0.384047	Rfx3_Rfx1_Rfx4	ENSMUST00000160471.1|Gpatch2|ENSMUSG00000039210.10|G patch domain containing 2
mm10_v2_chr2_-_140066661_140066805	0.383835	Rfx3_Rfx1_Rfx4	ENSMUST00000046656.2|Tasp1|ENSMUSG00000039033.5|taspase, threonine aspartase 1 	ENSMUST00000099304.3|Tasp1|ENSMUSG00000039033.5|taspase, threonine aspartase 1 	ENSMUST00000110079.2|Tasp1|ENSMUSG00000039033.5|taspase, threonine aspartase 1
mm10_v2_chr2_-_28699636_28699659	0.382319	Rfx3_Rfx1_Rfx4	ENSMUST00000102877.1|1700026L06Rik|ENSMUSG00000026809.9|RIKEN cDNA 1700026L06 gene
mm10_v2_chr15_+_89532816_89532890	0.382126	Rfx3_Rfx1_Rfx4	ENSMUST00000167173.1|Shank3|ENSMUSG00000022623.9|SH3/ankyrin domain gene 3
mm10_v2_chr13_+_43615950_43615991	0.381653	Rfx3_Rfx1_Rfx4	ENSMUST00000161817.1|Rnf182|ENSMUSG00000044164.2|ring finger protein 182
mm10_v2_chr7_-_43313233_43313285	0.38154	Rfx3_Rfx1_Rfx4	ENSMUST00000012796.7|Zfp715|ENSMUSG00000012640.10|zinc finger protein 715 	ENSMUST00000107986.2|Zfp715|ENSMUSG00000012640.10|zinc finger protein 715
mm10_v2_chr11_+_53519725_53519800	0.381158	Rfx3_Rfx1_Rfx4	ENSMUST00000108987.1|Sept8|ENSMUSG00000018398.12|septin 8 	ENSMUST00000121334.1|Sept8|ENSMUSG00000018398.12|septin 8 	ENSMUST00000117061.1|Sept8|ENSMUSG00000018398.12|septin 8
mm10_v2_chr17_+_8988348_8988395	0.377722	Rfx3_Rfx1_Rfx4	ENSMUST00000151609.1|1700010I14Rik|ENSMUSG00000023873.6|RIKEN cDNA 1700010I14 gene
mm10_v2_chr6_+_48395652_48395688	0.374765	Rfx3_Rfx1_Rfx4	ENSMUST00000077093.4|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1
mm10_v2_chr2_-_73775341_73775378	0.374638	Rfx3_Rfx1_Rfx4	ENSMUST00000112024.3|Chn1|ENSMUSG00000056486.11|chimerin (chimaerin) 1 	ENSMUST00000166199.1|Chn1|ENSMUSG00000056486.11|chimerin (chimaerin) 1 	ENSMUST00000180045.1|Chn1|ENSMUSG00000056486.11|chimerin (chimaerin) 1
mm10_v2_chr15_-_101869695_101869712	0.373662	Rfx3_Rfx1_Rfx4	ENSMUST00000087996.5|Krt77|ENSMUSG00000067594.5|keratin 77
mm10_v2_chr5_-_120634235_120634294	0.370951	Rfx3_Rfx1_Rfx4	ENSMUST00000177908.1|Ccdc42b|ENSMUSG00000094282.1|coiled-coil domain containing 42B
mm10_v2_chr1_-_59237093_59237256	0.367224	Rfx3_Rfx1_Rfx4	ENSMUST00000163058.1|Als2|ENSMUSG00000026024.8|amyotrophic lateral sclerosis 2 (juvenile) 	ENSMUST00000027178.6|Als2|ENSMUSG00000026024.8|amyotrophic lateral sclerosis 2 (juvenile)
mm10_v2_chr1_+_84839833_84839875	0.363829	Rfx3_Rfx1_Rfx4	ENSMUST00000097672.3|Fbxo36|ENSMUSG00000073633.3|F-box protein 36
mm10_v2_chr17_+_25829036_25829120	0.363452	Rfx3_Rfx1_Rfx4	ENSMUST00000026832.7|Jmjd8|ENSMUSG00000025736.8|jumonji domain containing 8 	ENSMUST00000123582.1|Jmjd8|ENSMUSG00000025736.8|jumonji domain containing 8
mm10_v2_chr14_+_50944499_50944514	0.361762	Rfx3_Rfx1_Rfx4	ENSMUST00000178092.1|Pnp|ENSMUSG00000021871.11|purine-nucleoside phosphorylase
mm10_v2_chr1_+_136018062_136018068	0.359889	Rfx3_Rfx1_Rfx4	ENSMUST00000117950.1|Tmem9|ENSMUSG00000026411.11|transmembrane protein 9
mm10_v2_chr11_+_22512088_22512088	0.35938	Rfx3_Rfx1_Rfx4	ENSMUST00000059319.7|Tmem17|ENSMUSG00000049904.7|transmembrane protein 17
mm10_v2_chr8_+_94666722_94666769	0.359319	Rfx3_Rfx1_Rfx4	ENSMUST00000034228.8|Arl2bp|ENSMUSG00000031776.10|ADP-ribosylation factor-like 2 binding protein
mm10_v2_chr19_-_4139605_4139613	0.359203	Rfx3_Rfx1_Rfx4	ENSMUST00000025761.6|Cabp4|ENSMUSG00000024842.7|calcium binding protein 4
mm10_v2_chr8_+_45627709_45627803	0.359052	Rfx3_Rfx1_Rfx4	ENSMUST00000134321.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000135336.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr8_+_105827721_105827751	0.358857	Rfx3_Rfx1_Rfx4	ENSMUST00000034365.4|Tsnaxip1|ENSMUSG00000031893.6|translin-associated factor X (Tsnax) interacting protein 1
mm10_v2_chr3_+_146450467_146450503	0.357447	Rfx3_Rfx1_Rfx4	ENSMUST00000061937.6|Ctbs|ENSMUSG00000028189.6|chitobiase, di-N-acetyl- 	ENSMUST00000029840.3|Ctbs|ENSMUSG00000028189.6|chitobiase, di-N-acetyl-
mm10_v2_chr11_-_59839828_59839843	0.357106	Rfx3_Rfx1_Rfx4	ENSMUST00000019517.3|Cops3|ENSMUSG00000019373.5|COP9 (constitutive photomorphogenic) homolog, subunit 3 (Arabidopsis thaliana)
mm10_v2_chr15_+_5143861_5143896	0.35545	Rfx3_Rfx1_Rfx4	ENSMUST00000051186.8|Prkaa1|ENSMUSG00000050697.8|protein kinase, AMP-activated, alpha 1 catalytic subunit
mm10_v2_chr17_-_55915870_55915870	0.354517	Rfx3_Rfx1_Rfx4	ENSMUST00000074828.4|Rpl21-ps6|ENSMUSG00000059912.4|ribosomal protein L21, pseudogene 6
mm10_v2_chr13_-_119755882_119755882	0.352003	Rfx3_Rfx1_Rfx4	ENSMUST00000178142.1|Nim1|ENSMUSG00000095930.1|serine/threonine-protein kinase NIM1
mm10_v2_chr1_-_124045247_124045267	0.35087	Rfx3_Rfx1_Rfx4	ENSMUST00000112603.2|Dpp10|ENSMUSG00000036815.10|dipeptidylpeptidase 10
mm10_v2_chr1_-_124045523_124045571	0.350533	Rfx3_Rfx1_Rfx4	ENSMUST00000112606.1|Dpp10|ENSMUSG00000036815.10|dipeptidylpeptidase 10
mm10_v2_chr5_-_92675125_92675145	0.346942	Rfx3_Rfx1_Rfx4	ENSMUST00000060930.3|Ccdc158|ENSMUSG00000050050.10|coiled-coil domain containing 158
mm10_v2_chr18_-_31949571_31949636	0.344219	Rfx3_Rfx1_Rfx4	ENSMUST00000064016.5|Gpr17|ENSMUSG00000052229.5|G protein-coupled receptor 17
mm10_v2_chr3_-_30647793_30647876	0.343405	Rfx3_Rfx1_Rfx4	ENSMUST00000029252.7|Lrrc34|ENSMUSG00000027702.7|leucine rich repeat containing 34
mm10_v2_chr16_-_38341812_38341859	0.343185	Rfx3_Rfx1_Rfx4	ENSMUST00000114740.2|Maats1|ENSMUSG00000022805.10|MYCBP-associated, testis expressed 1 	ENSMUST00000023501.8|Maats1|ENSMUSG00000022805.10|MYCBP-associated, testis expressed 1
mm10_v2_chr16_+_78301673_78301760	0.342866	Rfx3_Rfx1_Rfx4	ENSMUST00000114229.2|Cxadr|ENSMUSG00000022865.7|coxsackie virus and adenovirus receptor
mm10_v2_chr16_-_32099697_32099752	0.341187	Rfx3_Rfx1_Rfx4	ENSMUST00000155966.1|Pigx|ENSMUSG00000023791.8|phosphatidylinositol glycan anchor biosynthesis, class X 	ENSMUST00000096109.4|Pigx|ENSMUSG00000023791.8|phosphatidylinositol glycan anchor biosynthesis, class X
mm10_v2_chr9_-_7177000_7177063	0.341047	Rfx3_Rfx1_Rfx4	ENSMUST00000048417.6|Dync2h1|ENSMUSG00000047193.9|dynein cytoplasmic 2 heavy chain 1
mm10_v2_chr5_-_137531204_137531297	0.338349	Rfx3_Rfx1_Rfx4	ENSMUST00000150063.2|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2
mm10_v2_chr14_-_73049107_73049120	0.335012	Rfx3_Rfx1_Rfx4	ENSMUST00000044664.4|Cysltr2|ENSMUSG00000033470.5|cysteinyl leukotriene receptor 2 	ENSMUST00000169168.1|Cysltr2|ENSMUSG00000033470.5|cysteinyl leukotriene receptor 2
mm10_v2_chr8_+_94984399_94984477	0.334351	Rfx3_Rfx1_Rfx4	ENSMUST00000093271.6|Gpr56|ENSMUSG00000031785.9|G protein-coupled receptor 56
mm10_v2_chr5_-_129008546_129008596	0.334104	Rfx3_Rfx1_Rfx4	ENSMUST00000031378.7|Stx2|ENSMUSG00000029428.7|syntaxin 2
mm10_v2_chr11_+_120467635_120467719	0.333987	Rfx3_Rfx1_Rfx4	ENSMUST00000140862.1|Hgs|ENSMUSG00000025793.9|HGF-regulated tyrosine kinase substrate 	ENSMUST00000106205.1|Hgs|ENSMUSG00000025793.9|HGF-regulated tyrosine kinase substrate 	ENSMUST00000106203.1|Hgs|ENSMUSG00000025793.9|HGF-regulated tyrosine kinase substrate 	ENSMUST00000026900.7|Hgs|ENSMUSG00000025793.9|HGF-regulated tyrosine kinase substrate
mm10_v2_chr8_-_45975224_45975281	0.332438	Rfx3_Rfx1_Rfx4	ENSMUST00000095323.1|1700029J07Rik|ENSMUSG00000071103.3|RIKEN cDNA 1700029J07 gene 	ENSMUST00000098786.2|1700029J07Rik|ENSMUSG00000071103.3|RIKEN cDNA 1700029J07 gene
mm10_v2_chr14_-_20452217_20452241	0.332326	Rfx3_Rfx1_Rfx4	ENSMUST00000144797.1|Ttc18|ENSMUSG00000039543.9|tetratricopeptide repeat domain 18 	ENSMUST00000151077.1|Ttc18|ENSMUSG00000039543.9|tetratricopeptide repeat domain 18 	ENSMUST00000022348.7|Ttc18|ENSMUSG00000039543.9|tetratricopeptide repeat domain 18 	ENSMUST00000056073.6|Ttc18|ENSMUSG00000039543.9|tetratricopeptide repeat domain 18 	ENSMUST00000022349.6|Ttc18|ENSMUSG00000039543.9|tetratricopeptide repeat domain 18
mm10_v2_chr7_-_79743034_79743088	0.33158	Rfx3_Rfx1_Rfx4	ENSMUST00000032761.7|Pex11a|ENSMUSG00000030545.8|peroxisomal biogenesis factor 11 alpha
mm10_v2_chr7_-_126583177_126583255	0.327108	Rfx3_Rfx1_Rfx4	ENSMUST00000098036.2|Cln3|ENSMUSG00000030720.10|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) 	ENSMUST00000032962.4|Cln3|ENSMUSG00000030720.10|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)
mm10_v2_chr7_+_12978238_12978285	0.326075	Rfx3_Rfx1_Rfx4	ENSMUST00000108536.1|Zfp446|ENSMUSG00000033961.9|zinc finger protein 446
mm10_v2_chr12_-_21417356_21417436	0.325087	Rfx3_Rfx1_Rfx4	ENSMUST00000103002.1|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm10_v2_chr5_-_122264378_122264460	0.322445	Rfx3_Rfx1_Rfx4	ENSMUST00000111738.3|Tctn1|ENSMUSG00000038593.12|tectonic family member 1
mm10_v2_chr19_+_6276725_6276792	0.321638	Rfx3_Rfx1_Rfx4	ENSMUST00000025684.3|Ehd1|ENSMUSG00000024772.9|EH-domain containing 1
mm10_v2_chr2_-_29055051_29055079	0.318485	Rfx3_Rfx1_Rfx4	ENSMUST00000113843.1|1700101E01Rik|ENSMUSG00000079502.2|RIKEN cDNA 1700101E01 gene 	ENSMUST00000157048.2|1700101E01Rik|ENSMUSG00000079502.2|RIKEN cDNA 1700101E01 gene
mm10_v2_chr10_-_39960144_39960162	0.318419	Rfx3_Rfx1_Rfx4	ENSMUST00000095749.4|G630090E17Rik|ENSMUSG00000071335.4|RIKEN cDNA G630090E17 gene
mm10_v2_chr18_-_77186257_77186257	0.317323	Rfx3_Rfx1_Rfx4	ENSMUST00000097520.2|Gm7276|ENSMUSG00000073532.2|predicted gene 7276
mm10_v2_chr2_-_91444622_91444726	0.312073	Rfx3_Rfx1_Rfx4	ENSMUST00000064652.7|1110051M20Rik|ENSMUSG00000040591.12|RIKEN cDNA 1110051M20 gene 	ENSMUST00000102594.4|1110051M20Rik|ENSMUSG00000040591.12|RIKEN cDNA 1110051M20 gene 	ENSMUST00000094835.2|1110051M20Rik|ENSMUSG00000040591.12|RIKEN cDNA 1110051M20 gene
mm10_v2_chr7_-_140881811_140881869	0.311276	Rfx3_Rfx1_Rfx4	ENSMUST00000106048.3|Sirt3|ENSMUSG00000025486.10|sirtuin 3 	ENSMUST00000147331.2|Sirt3|ENSMUSG00000025486.10|sirtuin 3 	ENSMUST00000137710.1|Sirt3|ENSMUSG00000025486.10|sirtuin 3
mm10_v2_chr17_+_25828791_25828867	0.309501	Rfx3_Rfx1_Rfx4	ENSMUST00000133595.1|Jmjd8|ENSMUSG00000025736.8|jumonji domain containing 8
mm10_v2_chr1_+_187215501_187215547	0.309053	Rfx3_Rfx1_Rfx4	ENSMUST00000097443.3|Gpatch2|ENSMUSG00000039210.10|G patch domain containing 2 	ENSMUST00000065573.7|Gpatch2|ENSMUSG00000039210.10|G patch domain containing 2 	ENSMUST00000110943.2|Gpatch2|ENSMUSG00000039210.10|G patch domain containing 2 	ENSMUST00000044812.5|Gpatch2|ENSMUSG00000039210.10|G patch domain containing 2
mm10_v2_chr12_-_72184990_72185033	0.308911	Rfx3_Rfx1_Rfx4	ENSMUST00000021494.4|Ccdc175|ENSMUSG00000021086.4|coiled-coil domain containing 175
mm10_v2_chr17_+_33955902_33955926	0.3088	Rfx3_Rfx1_Rfx4	ENSMUST00000173196.2|Vps52|ENSMUSG00000024319.11|vacuolar protein sorting 52 (yeast)
mm10_v2_chr7_-_67803489_67803532	0.307171	Rfx3_Rfx1_Rfx4	ENSMUST00000181235.1|4833412C05Rik|ENSMUSG00000097697.1|RIKEN cDNA 4833412C05 gene
mm10_v2_chr17_-_23975183_23975235	0.30705	Rfx3_Rfx1_Rfx4	ENSMUST00000147626.1|Prss30|ENSMUSG00000024124.3|protease, serine, 30 	ENSMUST00000024936.3|Prss30|ENSMUSG00000024124.3|protease, serine, 30
mm10_v2_chr14_-_55643523_55643600	0.303981	Rfx3_Rfx1_Rfx4	ENSMUST00000132338.1|Tm9sf1|ENSMUSG00000002320.9|transmembrane 9 superfamily member 1
mm10_v2_chr5_-_129008494_129008537	0.303849	Rfx3_Rfx1_Rfx4	ENSMUST00000100680.3|Stx2|ENSMUSG00000029428.7|syntaxin 2
mm10_v2_chr17_+_33955812_33955901	0.301261	Rfx3_Rfx1_Rfx4	ENSMUST00000025178.9|Vps52|ENSMUSG00000024319.11|vacuolar protein sorting 52 (yeast) 	ENSMUST00000114330.2|Vps52|ENSMUSG00000024319.11|vacuolar protein sorting 52 (yeast)
mm10_v2_chr7_-_43313063_43313116	0.299987	Rfx3_Rfx1_Rfx4	ENSMUST00000135130.1|Zfp715|ENSMUSG00000012640.10|zinc finger protein 715 	ENSMUST00000139061.1|Zfp715|ENSMUSG00000012640.10|zinc finger protein 715
mm10_v2_chr11_+_115163333_115163348	0.299881	Rfx3_Rfx1_Rfx4	ENSMUST00000021077.3|Slc9a3r1|ENSMUSG00000020733.3|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1
mm10_v2_chr1_+_178405881_178406020	0.299774	Rfx3_Rfx1_Rfx4	ENSMUST00000027775.7|Efcab2|ENSMUSG00000026495.7|EF-hand calcium binding domain 2
mm10_v2_chr19_-_10555724_10555761	0.296764	Rfx3_Rfx1_Rfx4	ENSMUST00000145210.1|Tmem216|ENSMUSG00000024667.5|transmembrane protein 216 	ENSMUST00000123788.1|Tmem216|ENSMUSG00000024667.5|transmembrane protein 216 	ENSMUST00000059582.2|Tmem216|ENSMUSG00000024667.5|transmembrane protein 216 	ENSMUST00000154383.1|Tmem216|ENSMUSG00000024667.5|transmembrane protein 216
mm10_v2_chr17_-_25837082_25837295	0.296025	Rfx3_Rfx1_Rfx4	ENSMUST00000183929.1|Rhbdl1|ENSMUSG00000025735.7|rhomboid, veinlet-like 1 (Drosophila) 	ENSMUST00000184865.1|Rhbdl1|ENSMUSG00000025735.7|rhomboid, veinlet-like 1 (Drosophila) 	ENSMUST00000026831.7|Rhbdl1|ENSMUSG00000025735.7|rhomboid, veinlet-like 1 (Drosophila)
mm10_v2_chr1_+_136017967_136018042	0.295814	Rfx3_Rfx1_Rfx4	ENSMUST00000063719.8|Tmem9|ENSMUSG00000026411.11|transmembrane protein 9 	ENSMUST00000118832.1|Tmem9|ENSMUSG00000026411.11|transmembrane protein 9
mm10_v2_chr7_+_30232310_30232350	0.295722	Rfx3_Rfx1_Rfx4	ENSMUST00000108193.1|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I 	ENSMUST00000108192.1|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I
mm10_v2_chr10_-_56228636_56228695	0.295134	Rfx3_Rfx1_Rfx4	ENSMUST00000099739.3|Tbc1d32|ENSMUSG00000038122.8|TBC1 domain family, member 32
mm10_v2_chr4_-_103114238_103114299	0.294449	Rfx3_Rfx1_Rfx4	ENSMUST00000036451.8|Wdr78|ENSMUSG00000035126.13|WD repeat domain 78 	ENSMUST00000036557.8|Wdr78|ENSMUSG00000035126.13|WD repeat domain 78
mm10_v2_chr15_-_98762992_98763190	0.294036	Rfx3_Rfx1_Rfx4	ENSMUST00000156572.1|Arf3|ENSMUSG00000051853.8|ADP-ribosylation factor 3
mm10_v2_chr16_+_38902305_38902316	0.290504	Rfx3_Rfx1_Rfx4	ENSMUST00000023478.7|Igsf11|ENSMUSG00000022790.7|immunoglobulin superfamily, member 11
mm10_v2_chr1_-_36445248_36445271	0.289986	Rfx3_Rfx1_Rfx4	ENSMUST00000125304.1|Lman2l|ENSMUSG00000001143.7|lectin, mannose-binding 2-like 	ENSMUST00000115011.1|Lman2l|ENSMUSG00000001143.7|lectin, mannose-binding 2-like
mm10_v2_chr7_-_109616548_109616616	0.28971	Rfx3_Rfx1_Rfx4	ENSMUST00000077909.1|St5|ENSMUSG00000031024.6|suppression of tumorigenicity 5 	ENSMUST00000084738.3|St5|ENSMUSG00000031024.6|suppression of tumorigenicity 5
mm10_v2_chr2_+_119288725_119288771	0.280733	Rfx3_Rfx1_Rfx4	ENSMUST00000037280.4|Vps18|ENSMUSG00000034216.6|vacuolar protein sorting 18 (yeast)
mm10_v2_chr16_-_91728975_91729092	0.279907	Rfx3_Rfx1_Rfx4	ENSMUST00000073466.6|Cryzl1|ENSMUSG00000058240.7|crystallin, zeta (quinone reductase)-like 1
mm10_v2_chr14_+_48446128_48446276	0.279131	Rfx3_Rfx1_Rfx4	ENSMUST00000124720.1|Tmem260|ENSMUSG00000036339.11|transmembrane protein 260
mm10_v2_chr19_-_57197377_57197417	0.27806	Rfx3_Rfx1_Rfx4	ENSMUST00000111546.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr10_+_74967164_74967203	0.277438	Rfx3_Rfx1_Rfx4	ENSMUST00000037813.4|Gnaz|ENSMUSG00000040009.5|guanine nucleotide binding protein, alpha z subunit
mm10_v2_chr2_+_167932327_167932379	0.276159	Rfx3_Rfx1_Rfx4	ENSMUST00000029053.7|Ptpn1|ENSMUSG00000027540.7|protein tyrosine phosphatase, non-receptor type 1
mm10_v2_chr18_+_77185979_77186048	0.274522	Rfx3_Rfx1_Rfx4	ENSMUST00000075290.6|St8sia5|ENSMUSG00000025425.11|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
mm10_v2_chr5_-_112228633_112228680	0.274401	Rfx3_Rfx1_Rfx4	ENSMUST00000182699.1|Miat|ENSMUSG00000097767.2|myocardial infarction associated transcript (non-protein coding) 	ENSMUST00000182258.1|Miat|ENSMUSG00000097767.2|myocardial infarction associated transcript (non-protein coding) 	ENSMUST00000183036.1|Miat|ENSMUSG00000097767.2|myocardial infarction associated transcript (non-protein coding)
mm10_v2_chr1_+_179668202_179668268	0.273581	Rfx3_Rfx1_Rfx4	ENSMUST00000040538.3|Sccpdh|ENSMUSG00000038936.7|saccharopine dehydrogenase (putative)
mm10_v2_chr8_+_45975514_45975558	0.270132	Rfx3_Rfx1_Rfx4	ENSMUST00000034051.6|Ufsp2|ENSMUSG00000031634.6|UFM1-specific peptidase 2
mm10_v2_chr7_-_80232556_80232633	0.267792	Rfx3_Rfx1_Rfx4	ENSMUST00000071457.5|Cib1|ENSMUSG00000030538.9|calcium and integrin binding 1 (calmyrin)
mm10_v2_chr4_-_118620763_118620792	0.266559	Rfx3_Rfx1_Rfx4	ENSMUST00000071972.4|Wdr65|ENSMUSG00000028730.8|WD repeat domain 65
mm10_v2_chrX_-_122397351_122397425	0.262291	Rfx3_Rfx1_Rfx4	ENSMUST00000079490.4|Nap1l3|ENSMUSG00000055733.5|nucleosome assembly protein 1-like 3
mm10_v2_chr7_+_118855735_118855798	0.262255	Rfx3_Rfx1_Rfx4	ENSMUST00000098087.2|Iqck|ENSMUSG00000073856.4|IQ motif containing K 	ENSMUST00000106547.1|Iqck|ENSMUSG00000073856.4|IQ motif containing K
mm10_v2_chr17_-_35703971_35703994	0.255935	Rfx3_Rfx1_Rfx4	ENSMUST00000148065.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr2_+_129129700_129129791	0.252895	Rfx3_Rfx1_Rfx4	ENSMUST00000035481.4|Chchd5|ENSMUSG00000037938.4|coiled-coil-helix-coiled-coil-helix domain containing 5
mm10_v2_chr7_+_30231884_30231948	0.250426	Rfx3_Rfx1_Rfx4	ENSMUST00000019882.9|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I
mm10_v2_chr19_-_57197496_57197536	0.249491	Rfx3_Rfx1_Rfx4	ENSMUST00000111544.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr7_+_112427706_112427718	0.249203	Rfx3_Rfx1_Rfx4	ENSMUST00000033030.7|Parva|ENSMUSG00000030770.8|parvin, alpha
mm10_v2_chr18_+_77185815_77185879	0.249196	Rfx3_Rfx1_Rfx4	ENSMUST00000079618.4|St8sia5|ENSMUSG00000025425.11|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
mm10_v2_chr9_-_7176957_7176997	0.248722	Rfx3_Rfx1_Rfx4	ENSMUST00000147193.1|Dync2h1|ENSMUSG00000047193.9|dynein cytoplasmic 2 heavy chain 1 	ENSMUST00000139115.1|Dync2h1|ENSMUSG00000047193.9|dynein cytoplasmic 2 heavy chain 1
mm10_v2_chr11_+_3895223_3895310	0.247915	Rfx3_Rfx1_Rfx4	ENSMUST00000055931.4|Dusp18|ENSMUSG00000047205.6|dual specificity phosphatase 18 	ENSMUST00000109996.1|Dusp18|ENSMUSG00000047205.6|dual specificity phosphatase 18
mm10_v2_chr17_+_34837172_34837248	0.24653	Rfx3_Rfx1_Rfx4	ENSMUST00000173995.1|Dxo|ENSMUSG00000040482.9|decapping exoribonuclease
mm10_v2_chr11_-_107337556_107337637	0.245334	Rfx3_Rfx1_Rfx4	ENSMUST00000040380.6|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr4_+_155086577_155086610	0.241679	Rfx3_Rfx1_Rfx4	ENSMUST00000030915.4|Morn1|ENSMUSG00000029049.8|MORN repeat containing 1 	ENSMUST00000155775.1|Morn1|ENSMUSG00000029049.8|MORN repeat containing 1 	ENSMUST00000127457.1|Morn1|ENSMUSG00000029049.8|MORN repeat containing 1
mm10_v2_chr9_+_107563246_107563285	0.239874	Rfx3_Rfx1_Rfx4	ENSMUST00000010198.3|Tusc2|ENSMUSG00000010054.3|tumor suppressor candidate 2
mm10_v2_chr5_-_135778340_135778391	0.238314	Rfx3_Rfx1_Rfx4	ENSMUST00000178796.1|Styxl1|ENSMUSG00000019178.11|serine/threonine/tyrosine interacting-like 1 	ENSMUST00000178515.1|Styxl1|ENSMUSG00000019178.11|serine/threonine/tyrosine interacting-like 1 	ENSMUST00000111164.2|Styxl1|ENSMUSG00000019178.11|serine/threonine/tyrosine interacting-like 1
mm10_v2_chr11_-_3895085_3895104	0.236982	Rfx3_Rfx1_Rfx4	ENSMUST00000020712.4|4921536K21Rik|ENSMUSG00000020434.4|RIKEN cDNA 4921536K21 gene
mm10_v2_chr17_-_34850162_34850210	0.235958	Rfx3_Rfx1_Rfx4	ENSMUST00000046022.9|Skiv2l|ENSMUSG00000040356.10|superkiller viralicidic activity 2-like (S. cerevisiae)
mm10_v2_chrX_-_8132770_8132857	0.234184	Rfx3_Rfx1_Rfx4	ENSMUST00000130832.1|Wdr13|ENSMUSG00000031166.7|WD repeat domain 13 	ENSMUST00000033506.6|Wdr13|ENSMUSG00000031166.7|WD repeat domain 13 	ENSMUST00000115623.1|Wdr13|ENSMUSG00000031166.7|WD repeat domain 13 	ENSMUST00000153839.1|Wdr13|ENSMUSG00000031166.7|WD repeat domain 13
mm10_v2_chr16_-_31275277_31275290	0.228346	Rfx3_Rfx1_Rfx4	ENSMUST00000060188.7|Ppp1r2|ENSMUSG00000047714.8|protein phosphatase 1, regulatory (inhibitor) subunit 2
mm10_v2_chr2_-_163645125_163645136	0.227666	Rfx3_Rfx1_Rfx4	ENSMUST00000017851.3|Serinc3|ENSMUSG00000017707.9|serine incorporator 3
mm10_v2_chr9_+_108002501_108002680	0.226031	Rfx3_Rfx1_Rfx4	ENSMUST00000035214.4|Ip6k1|ENSMUSG00000032594.5|inositol hexaphosphate kinase 1 	ENSMUST00000175874.1|Ip6k1|ENSMUSG00000032594.5|inositol hexaphosphate kinase 1
mm10_v2_chr12_-_17011727_17011727	0.221631	Rfx3_Rfx1_Rfx4	ENSMUST00000095823.2|2410004P03Rik|ENSMUSG00000071398.2|RIKEN cDNA 2410004P03 gene
mm10_v2_chr2_+_29060239_29060287	0.22131	Rfx3_Rfx1_Rfx4	ENSMUST00000100237.3|Ttf1|ENSMUSG00000026803.11|transcription termination factor, RNA polymerase I
mm10_v2_chr8_-_85299483_85299535	0.220499	Rfx3_Rfx1_Rfx4	ENSMUST00000034131.8|Vps35|ENSMUSG00000031696.8|vacuolar protein sorting 35
mm10_v2_chr11_+_98863610_98863646	0.220117	Rfx3_Rfx1_Rfx4	ENSMUST00000142414.1|Wipf2|ENSMUSG00000038013.8|WAS/WASL interacting protein family, member 2 	ENSMUST00000037480.8|Wipf2|ENSMUSG00000038013.8|WAS/WASL interacting protein family, member 2
mm10_v2_chr7_+_27473761_27473773	0.218793	Rfx3_Rfx1_Rfx4	ENSMUST00000068641.6|Sertad3|ENSMUSG00000055200.6|SERTA domain containing 3
mm10_v2_chr7_-_92669917_92669943	0.217856	Rfx3_Rfx1_Rfx4	ENSMUST00000119954.1|Pcf11|ENSMUSG00000041328.9|cleavage and polyadenylation factor subunit homolog (S. cerevisiae)
mm10_v2_chr3_+_57425314_57425452	0.216336	Rfx3_Rfx1_Rfx4	ENSMUST00000029377.7|Tm4sf4|ENSMUSG00000027801.7|transmembrane 4 superfamily member 4
mm10_v2_chr9_-_60687459_60687672	0.215515	Rfx3_Rfx1_Rfx4	ENSMUST00000114032.1|Lrrc49|ENSMUSG00000047766.9|leucine rich repeat containing 49 	ENSMUST00000166168.1|Lrrc49|ENSMUSG00000047766.9|leucine rich repeat containing 49 	ENSMUST00000132366.1|Lrrc49|ENSMUSG00000047766.9|leucine rich repeat containing 49
mm10_v2_chr15_-_78174090_78174109	0.215201	Rfx3_Rfx1_Rfx4	ENSMUST00000016781.6|Ift27|ENSMUSG00000016637.6|intraflagellar transport 27
mm10_v2_chr13_+_96542602_96542626	0.214635	Rfx3_Rfx1_Rfx4	ENSMUST00000179226.1|Col4a3bp|ENSMUSG00000021669.8|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein
mm10_v2_chr13_+_96542727_96542775	0.214419	Rfx3_Rfx1_Rfx4	ENSMUST00000077672.4|Col4a3bp|ENSMUSG00000021669.8|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein 	ENSMUST00000109444.2|Col4a3bp|ENSMUSG00000021669.8|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein
mm10_v2_chr10_-_39899238_39899238	0.214075	Rfx3_Rfx1_Rfx4	ENSMUST00000178563.1|AA474331|ENSMUSG00000096687.1|expressed sequence AA474331
mm10_v2_chrX_+_7884321_7884378	0.213022	Rfx3_Rfx1_Rfx4	ENSMUST00000096514.3|Slc35a2|ENSMUSG00000031156.11|solute carrier family 35 (UDP-galactose transporter), member A2 	ENSMUST00000123277.1|Slc35a2|ENSMUSG00000031156.11|solute carrier family 35 (UDP-galactose transporter), member A2
mm10_v2_chr3_+_95134088_95134088	0.211617	Rfx3_Rfx1_Rfx4	ENSMUST00000066386.5|Lysmd1|ENSMUSG00000053769.5|LysM, putative peptidoglycan-binding, domain containing 1
mm10_v2_chr14_-_55643251_55643382	0.208909	Rfx3_Rfx1_Rfx4	ENSMUST00000120041.1|Tm9sf1|ENSMUSG00000002320.9|transmembrane 9 superfamily member 1 	ENSMUST00000121937.1|Tm9sf1|ENSMUSG00000002320.9|transmembrane 9 superfamily member 1 	ENSMUST00000133707.1|Tm9sf1|ENSMUSG00000002320.9|transmembrane 9 superfamily member 1 	ENSMUST00000002391.8|Tm9sf1|ENSMUSG00000002320.9|transmembrane 9 superfamily member 1 	ENSMUST00000121791.1|Tm9sf1|ENSMUSG00000002320.9|transmembrane 9 superfamily member 1
mm10_v2_chr4_+_10874498_10874607	0.206891	Rfx3_Rfx1_Rfx4	ENSMUST00000080517.7|2610301B20Rik|ENSMUSG00000059482.9|RIKEN cDNA 2610301B20 gene 	ENSMUST00000101504.2|2610301B20Rik|ENSMUSG00000059482.9|RIKEN cDNA 2610301B20 gene
mm10_v2_chr11_-_101278927_101279114	0.206714	Rfx3_Rfx1_Rfx4	ENSMUST00000168089.1|Coa3|ENSMUSG00000017188.3|cytochrome C oxidase assembly factor 3 	ENSMUST00000017332.3|Coa3|ENSMUSG00000017188.3|cytochrome C oxidase assembly factor 3
mm10_v2_chr1_+_180109192_180109265	0.205699	Rfx3_Rfx1_Rfx4	ENSMUST00000143176.1|Cdc42bpa|ENSMUSG00000026490.11|CDC42 binding protein kinase alpha 	ENSMUST00000135056.1|Cdc42bpa|ENSMUSG00000026490.11|CDC42 binding protein kinase alpha
mm10_v2_chr7_+_99268338_99268388	0.203755	Rfx3_Rfx1_Rfx4	ENSMUST00000107100.2|Map6|ENSMUSG00000055407.7|microtubule-associated protein 6
mm10_v2_chr4_+_128654686_128654738	0.201531	Rfx3_Rfx1_Rfx4	ENSMUST00000030588.6|Phc2|ENSMUSG00000028796.11|polyhomeotic-like 2 (Drosophila) 	ENSMUST00000136377.1|Phc2|ENSMUSG00000028796.11|polyhomeotic-like 2 (Drosophila)
mm10_v2_chr19_-_10556198_10556275	0.201201	Rfx3_Rfx1_Rfx4	ENSMUST00000025569.2|Tmem216|ENSMUSG00000024667.5|transmembrane protein 216
mm10_v2_chr3_-_36613461_36613477	0.201035	Rfx3_Rfx1_Rfx4	ENSMUST00000108156.2|Bbs7|ENSMUSG00000037325.4|Bardet-Biedl syndrome 7 (human)
mm10_v2_chr6_+_91473695_91473787	0.200543	Rfx3_Rfx1_Rfx4	ENSMUST00000032183.4|Tmem43|ENSMUSG00000030095.4|transmembrane protein 43
mm10_v2_chr7_+_122067164_122067216	0.2002	Rfx3_Rfx1_Rfx4	ENSMUST00000033158.4|Ubfd1|ENSMUSG00000030870.6|ubiquitin family domain containing 1
mm10_v2_chr6_-_77979652_77979708	0.199566	Rfx3_Rfx1_Rfx4	ENSMUST00000161846.1|Ctnna2|ENSMUSG00000063063.6|catenin (cadherin associated protein), alpha 2 	ENSMUST00000160894.1|Ctnna2|ENSMUSG00000063063.6|catenin (cadherin associated protein), alpha 2
mm10_v2_chr17_+_43389436_43389497	0.19939	Rfx3_Rfx1_Rfx4	ENSMUST00000113599.1|Gpr116|ENSMUSG00000056492.5|G protein-coupled receptor 116
mm10_v2_chr19_+_45560569_45560644	0.198519	Rfx3_Rfx1_Rfx4	ENSMUST00000047057.7|Dpcd|ENSMUSG00000041035.7|deleted in primary ciliary dyskinesia
mm10_v2_chr17_-_31277327_31277356	0.194458	Rfx3_Rfx1_Rfx4	ENSMUST00000024832.7|Rsph1|ENSMUSG00000024033.9|radial spoke head 1 homolog (Chlamydomonas)
mm10_v2_chr11_+_78245743_78245821	0.193624	Rfx3_Rfx1_Rfx4	ENSMUST00000002133.8|Sdf2|ENSMUSG00000002064.10|stromal cell derived factor 2
mm10_v2_chr17_-_84466186_84466245	0.193482	Rfx3_Rfx1_Rfx4	ENSMUST00000047524.8|Thada|ENSMUSG00000024251.9|thyroid adenoma associated
mm10_v2_chr14_+_60378242_60378292	0.193348	Rfx3_Rfx1_Rfx4	ENSMUST00000022561.6|Amer2|ENSMUSG00000021986.7|APC membrane recruitment 2
mm10_v2_chrX_+_7884244_7884313	0.19299	Rfx3_Rfx1_Rfx4	ENSMUST00000115663.3|Slc35a2|ENSMUSG00000031156.11|solute carrier family 35 (UDP-galactose transporter), member A2
mm10_v2_chr4_+_56802337_56802359	0.191134	Rfx3_Rfx1_Rfx4	ENSMUST00000045368.5|BC026590|ENSMUSG00000038827.5|cDNA sequence BC026590
mm10_v2_chr19_+_43689672_43689695	0.190029	Rfx3_Rfx1_Rfx4	ENSMUST00000081079.5|Entpd7|ENSMUSG00000025192.7|ectonucleoside triphosphate diphosphohydrolase 7
mm10_v2_chr11_-_62731865_62731910	0.190003	Rfx3_Rfx1_Rfx4	ENSMUST00000150336.1|Zfp287|ENSMUSG00000005267.7|zinc finger protein 287
mm10_v2_chr10_-_86705485_86705509	0.189675	Rfx3_Rfx1_Rfx4	ENSMUST00000020238.7|Hsp90b1|ENSMUSG00000020048.7|heat shock protein 90, beta (Grp94), member 1
mm10_v2_chr4_-_141664063_141664170	0.189109	Rfx3_Rfx1_Rfx4	ENSMUST00000084203.4|Plekhm2|ENSMUSG00000028917.8|pleckstrin homology domain containing, family M (with RUN domain) member 2
mm10_v2_chr7_+_130774069_130774185	0.18663	Rfx3_Rfx1_Rfx4	ENSMUST00000048453.5|Btbd16|ENSMUSG00000040298.5|BTB (POZ) domain containing 16
mm10_v2_chr11_+_101279092_101279111	0.18647	Rfx3_Rfx1_Rfx4	ENSMUST00000103107.4|Cntd1|ENSMUSG00000078653.4|cyclin N-terminal domain containing 1
mm10_v2_chr4_+_124802543_124802678	0.18437	Rfx3_Rfx1_Rfx4	ENSMUST00000138807.1|Mtf1|ENSMUSG00000028890.7|metal response element binding transcription factor 1 	ENSMUST00000030723.2|Mtf1|ENSMUSG00000028890.7|metal response element binding transcription factor 1 	ENSMUST00000175875.1|Mtf1|ENSMUSG00000028890.7|metal response element binding transcription factor 1
mm10_v2_chr19_-_60226666_60226706	0.183935	Rfx3_Rfx1_Rfx4	ENSMUST00000065286.1|D19Ertd737e|ENSMUSG00000057858.7|DNA segment, Chr 19, ERATO Doi 737, expressed
mm10_v2_chr7_+_80232862_80232945	0.18384	Rfx3_Rfx1_Rfx4	ENSMUST00000062915.7|Gdpgp1|ENSMUSG00000050973.10|GDP-D-glucose phosphorylase 1
mm10_v2_chr10_-_79746553_79746586	0.183344	Rfx3_Rfx1_Rfx4	ENSMUST00000020580.6|Polrmt|ENSMUSG00000020329.6|polymerase (RNA) mitochondrial (DNA directed) 	ENSMUST00000159016.1|Polrmt|ENSMUSG00000020329.6|polymerase (RNA) mitochondrial (DNA directed)
mm10_v2_chr4_+_103114385_103114395	0.183053	Rfx3_Rfx1_Rfx4	ENSMUST00000106858.1|Mier1|ENSMUSG00000028522.10|mesoderm induction early response 1 homolog (Xenopus laevis
mm10_v2_chr5_+_24586721_24586794	0.179479	Rfx3_Rfx1_Rfx4	ENSMUST00000121863.1|Chpf2|ENSMUSG00000038181.10|chondroitin polymerizing factor 2 	ENSMUST00000088295.4|Chpf2|ENSMUSG00000038181.10|chondroitin polymerizing factor 2
mm10_v2_chr19_+_4855129_4855269	0.176196	Rfx3_Rfx1_Rfx4	ENSMUST00000119694.1|Ctsf|ENSMUSG00000083282.2|cathepsin F
mm10_v2_chrX_-_49788204_49788243	0.173086	Rfx3_Rfx1_Rfx4	ENSMUST00000114893.1|Igsf1|ENSMUSG00000031111.10|immunoglobulin superfamily, member 1
mm10_v2_chr13_+_49504774_49504816	0.1729	Rfx3_Rfx1_Rfx4	ENSMUST00000051504.7|Ecm2|ENSMUSG00000043631.7|extracellular matrix protein 2, female organ and adipocyte specific
mm10_v2_chr2_+_164497518_164497560	0.169985	Rfx3_Rfx1_Rfx4	ENSMUST00000103101.4|Pigt|ENSMUSG00000017721.9|phosphatidylinositol glycan anchor biosynthesis, class T 	ENSMUST00000117066.1|Pigt|ENSMUSG00000017721.9|phosphatidylinositol glycan anchor biosynthesis, class T
mm10_v2_chr18_-_23041641_23041671	0.169892	Rfx3_Rfx1_Rfx4	ENSMUST00000097651.3|Nol4|ENSMUSG00000041923.9|nucleolar protein 4
mm10_v2_chr17_-_53463315_53463340	0.169275	Rfx3_Rfx1_Rfx4	ENSMUST00000024725.4|Efhb|ENSMUSG00000023931.4|EF hand domain family, member B
mm10_v2_chr6_+_48448100_48448229	0.169069	Rfx3_Rfx1_Rfx4	ENSMUST00000169350.2|Sspo|ENSMUSG00000029797.6|SCO-spondin 	ENSMUST00000043676.5|Sspo|ENSMUSG00000029797.6|SCO-spondin
mm10_v2_chr5_+_136908130_136908174	0.166975	Rfx3_Rfx1_Rfx4	ENSMUST00000008131.8|Rabl5|ENSMUSG00000007987.8|RAB, member of RAS oncogene family-like 5
mm10_v2_chr7_-_126922887_126922926	0.164345	Rfx3_Rfx1_Rfx4	ENSMUST00000134134.1|Tmem219|ENSMUSG00000060538.8|transmembrane protein 219 	ENSMUST00000119781.1|Tmem219|ENSMUSG00000060538.8|transmembrane protein 219 	ENSMUST00000121612.2|Tmem219|ENSMUSG00000060538.8|transmembrane protein 219
mm10_v2_chr9_+_46282997_46283024	0.163867	Rfx3_Rfx1_Rfx4	ENSMUST00000074957.3|Bud13|ENSMUSG00000032077.4|BUD13 homolog (yeast)
mm10_v2_chr16_+_91647859_91647905	0.163643	Rfx3_Rfx1_Rfx4	ENSMUST00000119368.1|Son|ENSMUSG00000022961.11|Son DNA binding protein 	ENSMUST00000114037.2|Son|ENSMUSG00000022961.11|Son DNA binding protein 	ENSMUST00000114036.2|Son|ENSMUSG00000022961.11|Son DNA binding protein 	ENSMUST00000122302.1|Son|ENSMUSG00000022961.11|Son DNA binding protein
mm10_v2_chr16_-_21694570_21694665	0.162616	Rfx3_Rfx1_Rfx4	ENSMUST00000053336.7|2510009E07Rik|ENSMUSG00000043391.9|RIKEN cDNA 2510009E07 gene
mm10_v2_chr16_-_4964168_4964237	0.161547	Rfx3_Rfx1_Rfx4	ENSMUST00000023157.4|Anks3|ENSMUSG00000022515.5|ankyrin repeat and sterile alpha motif domain containing 3
mm10_v2_chr4_-_103114555_103114578	0.160202	Rfx3_Rfx1_Rfx4	ENSMUST00000106868.3|Wdr78|ENSMUSG00000035126.13|WD repeat domain 78
mm10_v2_chr1_+_92906959_92907036	0.159765	Rfx3_Rfx1_Rfx4	ENSMUST00000060913.6|Dusp28|ENSMUSG00000047067.6|dual specificity phosphatase 28
mm10_v2_chr6_-_128424883_128424935	0.158367	Rfx3_Rfx1_Rfx4	ENSMUST00000001559.8|Itfg2|ENSMUSG00000001518.10|integrin alpha FG-GAP repeat containing 2
mm10_v2_chr9_-_99035679_99035718	0.158315	Rfx3_Rfx1_Rfx4	ENSMUST00000076730.6|Gm1123|ENSMUSG00000044860.8|predicted gene 1123
mm10_v2_chr6_-_119330668_119330694	0.156827	Rfx3_Rfx1_Rfx4	ENSMUST00000112756.1|Lrtm2|ENSMUSG00000055003.8|leucine-rich repeats and transmembrane domains 2
mm10_v2_chr17_-_34118476_34118522	0.155103	Rfx3_Rfx1_Rfx4	ENSMUST00000095347.5|Brd2|ENSMUSG00000024335.13|bromodomain containing 2
mm10_v2_chrX_+_7884022_7884055	0.153218	Rfx3_Rfx1_Rfx4	ENSMUST00000115660.4|Slc35a2|ENSMUSG00000031156.11|solute carrier family 35 (UDP-galactose transporter), member A2
mm10_v2_chr18_-_77047243_77047279	0.151967	Rfx3_Rfx1_Rfx4	ENSMUST00000137354.1|Katnal2|ENSMUSG00000025420.7|katanin p60 subunit A-like 2 	ENSMUST00000137498.1|Katnal2|ENSMUSG00000025420.7|katanin p60 subunit A-like 2
mm10_v2_chr17_+_46254017_46254165	0.151646	Rfx3_Rfx1_Rfx4	ENSMUST00000095262.4|Lrrc73|ENSMUSG00000071073.4|leucine rich repeat containing 73
mm10_v2_chr3_-_146770218_146770261	0.149994	Rfx3_Rfx1_Rfx4	ENSMUST00000106137.1|Prkacb|ENSMUSG00000005034.9|protein kinase, cAMP dependent, catalytic, beta
mm10_v2_chr8_-_92356103_92356120	0.14814	Rfx3_Rfx1_Rfx4	ENSMUST00000034183.3|4933436C20Rik|ENSMUSG00000031736.4|RIKEN cDNA 4933436C20 gene
mm10_v2_chr8_+_124231359_124231450	0.147649	Rfx3_Rfx1_Rfx4	ENSMUST00000034458.8|Galnt2|ENSMUSG00000089704.3|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2
mm10_v2_chr11_-_3193388_3193463	0.14614	Rfx3_Rfx1_Rfx4	ENSMUST00000081318.6|Sfi1|ENSMUSG00000023764.12|Sfi1 homolog, spindle assembly associated (yeast) 	ENSMUST00000142315.1|Sfi1|ENSMUSG00000023764.12|Sfi1 homolog, spindle assembly associated (yeast) 	ENSMUST00000118627.1|Sfi1|ENSMUSG00000023764.12|Sfi1 homolog, spindle assembly associated (yeast) 	ENSMUST00000066391.7|Sfi1|ENSMUSG00000023764.12|Sfi1 homolog, spindle assembly associated (yeast)
mm10_v2_chr4_-_55532453_55532485	0.14498	Rfx3_Rfx1_Rfx4	ENSMUST00000132746.1|Klf4|ENSMUSG00000003032.8|Kruppel-like factor 4 (gut) 	ENSMUST00000107619.2|Klf4|ENSMUSG00000003032.8|Kruppel-like factor 4 (gut)
mm10_v2_chr5_-_123749393_123749418	0.144759	Rfx3_Rfx1_Rfx4	ENSMUST00000057795.5|Rsrc2|ENSMUSG00000029422.8|arginine/serine-rich coiled-coil 2 	ENSMUST00000111515.1|Rsrc2|ENSMUSG00000029422.8|arginine/serine-rich coiled-coil 2 	ENSMUST00000182309.1|Rsrc2|ENSMUSG00000029422.8|arginine/serine-rich coiled-coil 2
mm10_v2_chr9_+_108479849_108479916	0.144673	Rfx3_Rfx1_Rfx4	ENSMUST00000065014.4|Lamb2|ENSMUSG00000052911.4|laminin, beta 2
mm10_v2_chr13_-_53377355_53377373	0.144627	Rfx3_Rfx1_Rfx4	ENSMUST00000021920.6|Sptlc1|ENSMUSG00000021468.7|serine palmitoyltransferase, long chain base subunit 1
mm10_v2_chr17_-_8101228_8101228	0.144244	Rfx3_Rfx1_Rfx4	ENSMUST00000097422.4|Gm1604A|ENSMUSG00000094083.1|predicted gene 1604A
mm10_v2_chr7_-_80232752_80232842	0.144001	Rfx3_Rfx1_Rfx4	ENSMUST00000065163.8|Cib1|ENSMUSG00000030538.9|calcium and integrin binding 1 (calmyrin)
mm10_v2_chr15_-_76126538_76126556	0.142123	Rfx3_Rfx1_Rfx4	ENSMUST00000054022.5|BC024139|ENSMUSG00000044361.9|cDNA sequence BC024139 	ENSMUST00000089654.3|BC024139|ENSMUSG00000044361.9|cDNA sequence BC024139
mm10_v2_chr17_+_35879770_35879824	0.142006	Rfx3_Rfx1_Rfx4	ENSMUST00000025292.8|Dhx16|ENSMUSG00000024422.8|DEAH (Asp-Glu-Ala-His) box polypeptide 16
mm10_v2_chr17_+_35049966_35049966	0.139946	Rfx3_Rfx1_Rfx4	ENSMUST00000007257.9|Clic1|ENSMUSG00000007041.9|chloride intracellular channel 1
mm10_v2_chr13_+_59585259_59585441	0.139355	Rfx3_Rfx1_Rfx4	ENSMUST00000168367.1|Naa35|ENSMUSG00000021555.8|N(alpha)-acetyltransferase 35, NatC auxiliary subunit 	ENSMUST00000022038.7|Naa35|ENSMUSG00000021555.8|N(alpha)-acetyltransferase 35, NatC auxiliary subunit 	ENSMUST00000166923.1|Naa35|ENSMUSG00000021555.8|N(alpha)-acetyltransferase 35, NatC auxiliary subunit
mm10_v2_chr18_-_31609893_31609927	0.139265	Rfx3_Rfx1_Rfx4	ENSMUST00000060396.6|Slc25a46|ENSMUSG00000024259.8|solute carrier family 25, member 46
mm10_v2_chr11_+_85171096_85171104	0.136263	Rfx3_Rfx1_Rfx4	ENSMUST00000018623.3|1700125H20Rik|ENSMUSG00000018479.6|RIKEN cDNA 1700125H20 gene
mm10_v2_chr2_-_3332566_3332650	0.134444	Rfx3_Rfx1_Rfx4	ENSMUST00000062672.6|Rpp38|ENSMUSG00000049950.6|ribonuclease P/MRP 38 subunit
mm10_v2_chr15_+_25773985_25774042	0.132102	Rfx3_Rfx1_Rfx4	ENSMUST00000125667.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr16_+_4741543_4741592	0.132027	Rfx3_Rfx1_Rfx4	ENSMUST00000120232.1|Hmox2|ENSMUSG00000004070.9|heme oxygenase (decycling) 2
mm10_v2_chr8_-_95281590_95281610	0.131178	Rfx3_Rfx1_Rfx4	ENSMUST00000120044.2|Cngb1|ENSMUSG00000031789.10|cyclic nucleotide gated channel beta 1 	ENSMUST00000121162.2|Cngb1|ENSMUSG00000031789.10|cyclic nucleotide gated channel beta 1
mm10_v2_chr8_+_47713266_47713266	0.130515	Rfx3_Rfx1_Rfx4	ENSMUST00000180928.1|E030037K01Rik|ENSMUSG00000097706.1|RIKEN cDNA E030037K01 gene
mm10_v2_chr9_+_8544196_8544225	0.130494	Rfx3_Rfx1_Rfx4	ENSMUST00000050433.6|Trpc6|ENSMUSG00000031997.8|transient receptor potential cation channel, subfamily C, member 6
mm10_v2_chr3_-_146770603_146770781	0.130165	Rfx3_Rfx1_Rfx4	ENSMUST00000106138.1|Prkacb|ENSMUSG00000005034.9|protein kinase, cAMP dependent, catalytic, beta
mm10_v2_chr17_+_28142267_28142321	0.128716	Rfx3_Rfx1_Rfx4	ENSMUST00000043503.3|Scube3|ENSMUSG00000038677.7|signal peptide, CUB domain, EGF-like 3
mm10_v2_chr5_+_66259890_66259912	0.127492	Rfx3_Rfx1_Rfx4	ENSMUST00000065530.6|Nsun7|ENSMUSG00000029206.7|NOL1/NOP2/Sun domain family, member 7
mm10_v2_chr8_+_105701624_105701693	0.127267	Rfx3_Rfx1_Rfx4	ENSMUST00000093195.6|Pard6a|ENSMUSG00000005699.9|par-6 (partitioning defective 6,) homolog alpha (C. elegans)
mm10_v2_chr11_-_66168444_66168480	0.124462	Rfx3_Rfx1_Rfx4	ENSMUST00000108691.1|Dnah9|ENSMUSG00000056752.10|dynein, axonemal, heavy chain 9
mm10_v2_chr2_+_36049453_36049507	0.124172	Rfx3_Rfx1_Rfx4	ENSMUST00000028256.4|Morn5|ENSMUSG00000026894.4|MORN repeat containing 5
mm10_v2_chr15_+_79659196_79659267	0.123204	Rfx3_Rfx1_Rfx4	ENSMUST00000023064.7|Cby1|ENSMUSG00000022428.7|chibby homolog 1 (Drosophila)
mm10_v2_chr13_+_63015167_63015167	0.122886	Rfx3_Rfx1_Rfx4	ENSMUST00000021911.8|2010111I01Rik|ENSMUSG00000021458.10|RIKEN cDNA 2010111I01 gene
mm10_v2_chr15_+_30172570_30172600	0.121602	Rfx3_Rfx1_Rfx4	ENSMUST00000081728.5|Ctnnd2|ENSMUSG00000022240.9|catenin (cadherin associated protein), delta 2
mm10_v2_chr5_+_124541296_124541329	0.12023	Rfx3_Rfx1_Rfx4	ENSMUST00000124529.1|Tmed2|ENSMUSG00000029390.7|transmembrane emp24 domain trafficking protein 2
mm10_v2_chr4_+_45890303_45890340	0.120082	Rfx3_Rfx1_Rfx4	ENSMUST00000178561.1|E230008N13Rik|ENSMUSG00000035539.7|RIKEN cDNA E230008N13 gene
mm10_v2_chr8_-_84197667_84197680	0.117021	Rfx3_Rfx1_Rfx4	ENSMUST00000181282.1|Gm26887|ENSMUSG00000097120.1|predicted gene, 26887
mm10_v2_chr1_-_133753681_133753857	0.113163	Rfx3_Rfx1_Rfx4	ENSMUST00000125659.1|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4 	ENSMUST00000165602.2|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4 	ENSMUST00000048953.7|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4
mm10_v2_chr4_+_150997081_150997097	0.112827	Rfx3_Rfx1_Rfx4	ENSMUST00000030803.1|Uts2|ENSMUSG00000028963.1|urotensin 2
mm10_v2_chr19_-_59943647_59943678	0.112646	Rfx3_Rfx1_Rfx4	ENSMUST00000171986.1|Rab11fip2|ENSMUSG00000040022.8|RAB11 family interacting protein 2 (class I)
mm10_v2_chr17_+_56717759_56717819	0.112409	Rfx3_Rfx1_Rfx4	ENSMUST00000002452.6|Ndufa11|ENSMUSG00000002379.6|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11
mm10_v2_chr2_+_119972699_119972746	0.112137	Rfx3_Rfx1_Rfx4	ENSMUST00000066058.7|Mapkbp1|ENSMUSG00000033902.11|mitogen-activated protein kinase binding protein 1
mm10_v2_chr8_+_94667082_94667226	0.111427	Rfx3_Rfx1_Rfx4	ENSMUST00000109527.4|Arl2bp|ENSMUSG00000031776.10|ADP-ribosylation factor-like 2 binding protein
mm10_v2_chr2_+_163017354_163017513	0.108909	Rfx3_Rfx1_Rfx4	ENSMUST00000018002.6|Ift52|ENSMUSG00000017858.6|intraflagellar transport 52 	ENSMUST00000150396.1|Ift52|ENSMUSG00000017858.6|intraflagellar transport 52
mm10_v2_chr12_+_8313425_8313454	0.10853	Rfx3_Rfx1_Rfx4	ENSMUST00000020927.8|Hs1bp3|ENSMUSG00000020605.8|HCLS1 binding protein 3
mm10_v2_chr10_+_58255465_58255539	0.108491	Rfx3_Rfx1_Rfx4	ENSMUST00000057659.7|Gcc2|ENSMUSG00000038039.7|GRIP and coiled-coil domain containing 2 	ENSMUST00000162041.1|Gcc2|ENSMUSG00000038039.7|GRIP and coiled-coil domain containing 2 	ENSMUST00000162860.1|Gcc2|ENSMUSG00000038039.7|GRIP and coiled-coil domain containing 2
mm10_v2_chr4_+_6365650_6365720	0.106346	Rfx3_Rfx1_Rfx4	ENSMUST00000029912.4|Sdcbp|ENSMUSG00000028249.9|syndecan binding protein 	ENSMUST00000103008.5|Sdcbp|ENSMUSG00000028249.9|syndecan binding protein 	ENSMUST00000175769.1|Sdcbp|ENSMUSG00000028249.9|syndecan binding protein 	ENSMUST00000108374.1|Sdcbp|ENSMUSG00000028249.9|syndecan binding protein 	ENSMUST00000140830.1|Sdcbp|ENSMUSG00000028249.9|syndecan binding protein
mm10_v2_chr3_-_84582476_84582534	0.104983	Rfx3_Rfx1_Rfx4	ENSMUST00000107687.2|Arfip1|ENSMUSG00000074513.3|ADP-ribosylation factor interacting protein 1 	ENSMUST00000098990.3|Arfip1|ENSMUSG00000074513.3|ADP-ribosylation factor interacting protein 1
mm10_v2_chr16_-_91728701_91728802	0.104379	Rfx3_Rfx1_Rfx4	ENSMUST00000114023.2|Cryzl1|ENSMUSG00000058240.7|crystallin, zeta (quinone reductase)-like 1 	ENSMUST00000117644.1|Cryzl1|ENSMUSG00000058240.7|crystallin, zeta (quinone reductase)-like 1
mm10_v2_chr11_+_52004220_52004311	0.101645	Rfx3_Rfx1_Rfx4	ENSMUST00000121591.1|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000063303.4|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000109081.2|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000109080.2|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000109079.2|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000109077.2|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000109078.1|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000063321.6|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000135076.1|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000120374.1|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3
mm10_v2_chr6_-_91473361_91473470	0.101339	Rfx3_Rfx1_Rfx4	ENSMUST00000040835.7|Chchd4|ENSMUSG00000034203.7|coiled-coil-helix-coiled-coil-helix domain containing 4
mm10_v2_chr9_+_63602650_63602703	0.101071	Rfx3_Rfx1_Rfx4	ENSMUST00000041551.7|Aagab|ENSMUSG00000037257.7|alpha- and gamma-adaptin binding protein
mm10_v2_chr1_-_133801031_133801041	0.100546	Rfx3_Rfx1_Rfx4	ENSMUST00000143567.1|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4
mm10_v2_chr3_-_36613370_36613397	0.0987638	Rfx3_Rfx1_Rfx4	ENSMUST00000040148.4|Bbs7|ENSMUSG00000037325.4|Bardet-Biedl syndrome 7 (human) 	ENSMUST00000142333.1|Bbs7|ENSMUSG00000037325.4|Bardet-Biedl syndrome 7 (human)
mm10_v2_chr19_-_10577362_10577407	0.0977135	Rfx3_Rfx1_Rfx4	ENSMUST00000025568.2|Tmem138|ENSMUSG00000024666.5|transmembrane protein 138
mm10_v2_chr17_+_24896488_24896530	0.0973814	Rfx3_Rfx1_Rfx4	ENSMUST00000024978.6|Nme3|ENSMUSG00000073435.4|NME/NM23 nucleoside diphosphate kinase 3
mm10_v2_chr4_-_121017201_121017261	0.0972276	Rfx3_Rfx1_Rfx4	ENSMUST00000043200.7|Smap2|ENSMUSG00000032870.8|small ArfGAP 2
mm10_v2_chr5_-_28210022_28210034	0.0959801	Rfx3_Rfx1_Rfx4	ENSMUST00000118882.1|Cnpy1|ENSMUSG00000044681.12|canopy 1 homolog (zebrafish)
mm10_v2_chr16_+_32673144_32673199	0.0918432	Rfx3_Rfx1_Rfx4	ENSMUST00000115122.2|Tnk2|ENSMUSG00000022791.10|tyrosine kinase, non-receptor, 2 	ENSMUST00000115120.1|Tnk2|ENSMUSG00000022791.10|tyrosine kinase, non-receptor, 2 	ENSMUST00000131238.1|Tnk2|ENSMUSG00000022791.10|tyrosine kinase, non-receptor, 2 	ENSMUST00000115121.2|Tnk2|ENSMUSG00000022791.10|tyrosine kinase, non-receptor, 2 	ENSMUST00000152361.1|Tnk2|ENSMUSG00000022791.10|tyrosine kinase, non-receptor, 2
mm10_v2_chr2_+_18998332_18998378	0.0917812	Rfx3_Rfx1_Rfx4	ENSMUST00000028069.1|4930426L09Rik|ENSMUSG00000026736.1|RIKEN cDNA 4930426L09 gene
mm10_v2_chr2_+_116900152_116900216	0.0913488	Rfx3_Rfx1_Rfx4	ENSMUST00000126467.1|D330050G23Rik|ENSMUSG00000085316.1|RIKEN cDNA D330050G23 gene 	ENSMUST00000128305.1|D330050G23Rik|ENSMUSG00000085316.1|RIKEN cDNA D330050G23 gene 	ENSMUST00000155323.1|D330050G23Rik|ENSMUSG00000085316.1|RIKEN cDNA D330050G23 gene
mm10_v2_chr5_-_122372230_122372390	0.0907686	Rfx3_Rfx1_Rfx4	ENSMUST00000031419.5|Fam216a|ENSMUSG00000029463.5|family with sequence similarity 216, member A
mm10_v2_chr1_-_53706775_53706841	0.0878981	Rfx3_Rfx1_Rfx4	ENSMUST00000094964.5|Dnah7a|ENSMUSG00000096141.1|dynein, axonemal, heavy chain 7A
mm10_v2_chr11_-_60115226_60115237	0.0864571	Rfx3_Rfx1_Rfx4	ENSMUST00000130746.1|4930412M03Rik|ENSMUSG00000051008.5|RIKEN cDNA 4930412M03 gene
mm10_v2_chr6_-_30509738_30509783	0.0859345	Rfx3_Rfx1_Rfx4	ENSMUST00000115160.3|Tmem209|ENSMUSG00000029782.12|transmembrane protein 209
mm10_v2_chr6_-_145746270_145746274	0.0842421	Rfx3_Rfx1_Rfx4	ENSMUST00000144757.1|Gm15704|ENSMUSG00000085658.1|predicted gene 15704
mm10_v2_chr10_-_80900749_80900969	0.0828593	Rfx3_Rfx1_Rfx4	ENSMUST00000020440.6|Timm13|ENSMUSG00000020219.6|translocase of inner mitochondrial membrane 13
mm10_v2_chr17_+_5841307_5841377	0.0827868	Rfx3_Rfx1_Rfx4	ENSMUST00000002436.9|Snx9|ENSMUSG00000002365.9|sorting nexin 9
mm10_v2_chr13_-_34002784_34002812	0.0816345	Rfx3_Rfx1_Rfx4	ENSMUST00000166354.1|Serpinb6a|ENSMUSG00000060147.9|serine (or cysteine) peptidase inhibitor, clade B, member 6a 	ENSMUST00000076532.7|Serpinb6a|ENSMUSG00000060147.9|serine (or cysteine) peptidase inhibitor, clade B, member 6a 	ENSMUST00000171034.1|Serpinb6a|ENSMUSG00000060147.9|serine (or cysteine) peptidase inhibitor, clade B, member 6a
mm10_v2_chr1_+_118389058_118389058	0.0814823	Rfx3_Rfx1_Rfx4	ENSMUST00000049404.6|Clasp1|ENSMUSG00000064302.7|CLIP associating protein 1 	ENSMUST00000070989.7|Clasp1|ENSMUSG00000064302.7|CLIP associating protein 1 	ENSMUST00000165223.1|Clasp1|ENSMUSG00000064302.7|CLIP associating protein 1 	ENSMUST00000178710.1|Clasp1|ENSMUSG00000064302.7|CLIP associating protein 1
mm10_v2_chr6_-_33060256_33060267	0.0804996	Rfx3_Rfx1_Rfx4	ENSMUST00000066379.4|Chchd3|ENSMUSG00000053768.7|coiled-coil-helix-coiled-coil-helix domain containing 3
mm10_v2_chr10_+_75893398_75893429	0.0802634	Rfx3_Rfx1_Rfx4	ENSMUST00000009236.4|Derl3|ENSMUSG00000009092.4|Der1-like domain family, member 3
mm10_v2_chr17_+_47785720_47785739	0.0798729	Rfx3_Rfx1_Rfx4	ENSMUST00000024786.7|Tfeb|ENSMUSG00000023990.12|transcription factor EB
mm10_v2_chr12_+_64965742_64965775	0.0794534	Rfx3_Rfx1_Rfx4	ENSMUST00000066296.7|Fam179b|ENSMUSG00000035614.10|family with sequence similarity 179, member B
mm10_v2_chr5_+_64812336_64812350	0.0792754	Rfx3_Rfx1_Rfx4	ENSMUST00000166409.1|Klf3|ENSMUSG00000029178.8|Kruppel-like factor 3 (basic)
mm10_v2_chr5_-_114823460_114823475	0.0783236	Rfx3_Rfx1_Rfx4	ENSMUST00000140374.1|Gm20499|ENSMUSG00000092252.1|predicted gene 20499 	ENSMUST00000100850.4|2610524H06Rik|ENSMUSG00000092486.1|RIKEN cDNA 2610524H06 gene
mm10_v2_chr6_-_90428401_90428480	0.0775308	Rfx3_Rfx1_Rfx4	ENSMUST00000062750.5|Ccdc37|ENSMUSG00000048794.8|coiled-coil domain containing 37 	ENSMUST00000165673.1|Ccdc37|ENSMUSG00000048794.8|coiled-coil domain containing 37
mm10_v2_chr15_-_36140393_36140406	0.0756413	Rfx3_Rfx1_Rfx4	ENSMUST00000172831.1|Rgs22|ENSMUSG00000037627.9|regulator of G-protein signalling 22
mm10_v2_chr17_+_6007580_6007624	0.074376	Rfx3_Rfx1_Rfx4	ENSMUST00000115784.1|Synj2|ENSMUSG00000023805.10|synaptojanin 2 	ENSMUST00000115785.1|Synj2|ENSMUSG00000023805.10|synaptojanin 2
mm10_v2_chr6_-_119330723_119330800	0.0733253	Rfx3_Rfx1_Rfx4	ENSMUST00000068351.7|Lrtm2|ENSMUSG00000055003.8|leucine-rich repeats and transmembrane domains 2
mm10_v2_chr6_+_149141638_149141663	0.0732039	Rfx3_Rfx1_Rfx4	ENSMUST00000166416.1|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20 	ENSMUST00000111551.1|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20
mm10_v2_chr8_+_72219726_72219785	0.0716742	Rfx3_Rfx1_Rfx4	ENSMUST00000003123.8|Fam32a|ENSMUSG00000003039.8|family with sequence similarity 32, member A
mm10_v2_chr1_+_151428612_151428718	0.0713756	Rfx3_Rfx1_Rfx4	ENSMUST00000065625.5|Trmt1l|ENSMUSG00000053286.5|tRNA methyltransferase 1 like
mm10_v2_chrX_-_133898292_133898377	0.071035	Rfx3_Rfx1_Rfx4	ENSMUST00000176718.1|Tspan6|ENSMUSG00000067377.6|tetraspanin 6 	ENSMUST00000176641.1|Tspan6|ENSMUSG00000067377.6|tetraspanin 6
mm10_v2_chr6_-_136875794_136875811	0.0706945	Rfx3_Rfx1_Rfx4	ENSMUST00000032342.1|Mgp|ENSMUSG00000030218.1|matrix Gla protein
mm10_v2_chr8_-_84104773_84104793	0.0703883	Rfx3_Rfx1_Rfx4	ENSMUST00000041367.7|Dcaf15|ENSMUSG00000037103.7|DDB1 and CUL4 associated factor 15
mm10_v2_chr16_-_43979050_43979093	0.0676111	Rfx3_Rfx1_Rfx4	ENSMUST00000165648.1|Zdhhc23|ENSMUSG00000036304.7|zinc finger, DHHC domain containing 23 	ENSMUST00000036321.7|Zdhhc23|ENSMUSG00000036304.7|zinc finger, DHHC domain containing 23
mm10_v2_chr17_-_36951338_36951425	0.0669852	Rfx3_Rfx1_Rfx4	ENSMUST00000173540.1|Ppp1r11|ENSMUSG00000036398.7|protein phosphatase 1, regulatory (inhibitor) subunit 11
mm10_v2_chr7_+_67222544_67222635	0.0669695	Rfx3_Rfx1_Rfx4	ENSMUST00000058771.5|Lysmd4|ENSMUSG00000043831.5|LysM, putative peptidoglycan-binding, domain containing 4 	ENSMUST00000179106.1|Lysmd4|ENSMUSG00000043831.5|LysM, putative peptidoglycan-binding, domain containing 4
mm10_v2_chr10_-_39133848_39133912	0.066808	Rfx3_Rfx1_Rfx4	ENSMUST00000134279.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B 	ENSMUST00000139743.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B 	ENSMUST00000149949.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B 	ENSMUST00000124941.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B 	ENSMUST00000125042.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B 	ENSMUST00000063204.2|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B
mm10_v2_chr15_+_36179530_36179701	0.0667245	Rfx3_Rfx1_Rfx4	ENSMUST00000171205.1|Spag1|ENSMUSG00000037617.5|sperm associated antigen 1
mm10_v2_chr12_+_105032638_105032705	0.0665187	Rfx3_Rfx1_Rfx4	ENSMUST00000021522.3|Glrx5|ENSMUSG00000021102.3|glutaredoxin 5 homolog (S. cerevisiae)
mm10_v2_chr2_+_32629467_32629514	0.0654589	Rfx3_Rfx1_Rfx4	ENSMUST00000068271.4|Ak1|ENSMUSG00000026817.8|adenylate kinase 1
mm10_v2_chr9_-_124424154_124424154	0.0649143	Rfx3_Rfx1_Rfx4	ENSMUST00000180270.1|Ppp2r3d|ENSMUSG00000093803.1|protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta
mm10_v2_chr10_-_78753046_78753076	0.0635677	Rfx3_Rfx1_Rfx4	ENSMUST00000105383.2|Ccdc105|ENSMUSG00000078442.2|coiled-coil domain containing 105
mm10_v2_chr13_-_49320219_49320311	0.062748	Rfx3_Rfx1_Rfx4	ENSMUST00000110086.1|Fgd3|ENSMUSG00000037946.5|FYVE, RhoGEF and PH domain containing 3
mm10_v2_chr2_-_101628930_101628954	0.0623265	Rfx3_Rfx1_Rfx4	ENSMUST00000099682.2|B230118H07Rik|ENSMUSG00000027165.10|RIKEN cDNA B230118H07 gene
mm10_v2_chr4_+_129600670_129600715	0.0619615	Rfx3_Rfx1_Rfx4	ENSMUST00000102591.3|Tmem234|ENSMUSG00000028797.14|transmembrane protein 234 	ENSMUST00000181579.1|Tmem234|ENSMUSG00000028797.14|transmembrane protein 234 	ENSMUST00000173758.1|Tmem234|ENSMUSG00000028797.14|transmembrane protein 234
mm10_v2_chr10_+_127063527_127063538	0.05976	Rfx3_Rfx1_Rfx4	ENSMUST00000006911.5|Cdk4|ENSMUSG00000006728.6|cyclin-dependent kinase 4
mm10_v2_chr13_+_46273700_46273721	0.0594628	Rfx3_Rfx1_Rfx4	ENSMUST00000076622.3|Stmnd1|ENSMUSG00000063529.3|stathmin domain containing 1
mm10_v2_chr5_-_21424664_21424686	0.0585878	Rfx3_Rfx1_Rfx4	ENSMUST00000115245.1|Ccdc146|ENSMUSG00000064280.7|coiled-coil domain containing 146 	ENSMUST00000030552.5|Ccdc146|ENSMUSG00000064280.7|coiled-coil domain containing 146
mm10_v2_chr5_-_121527186_121527258	0.0567443	Rfx3_Rfx1_Rfx4	ENSMUST00000152270.1|Mapkapk5|ENSMUSG00000029454.9|MAP kinase-activated protein kinase 5
mm10_v2_chr6_+_113392417_113392497	0.056237	Rfx3_Rfx1_Rfx4	ENSMUST00000032414.4|Ttll3|ENSMUSG00000030276.13|tubulin tyrosine ligase-like family, member 3 	ENSMUST00000038889.5|Ttll3|ENSMUSG00000030276.13|tubulin tyrosine ligase-like family, member 3
mm10_v2_chr19_+_6942501_6942584	0.054696	Rfx3_Rfx1_Rfx4	ENSMUST00000113423.3|Bad|ENSMUSG00000024959.7|BCL2-associated agonist of cell death
mm10_v2_chr4_-_155086271_155086379	0.0534871	Rfx3_Rfx1_Rfx4	ENSMUST00000030914.3|Rer1|ENSMUSG00000029048.3|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)
mm10_v2_chr10_-_128645965_128645991	0.0533923	Rfx3_Rfx1_Rfx4	ENSMUST00000133342.1|Ikzf4|ENSMUSG00000002578.9|IKAROS family zinc finger 4
mm10_v2_chr4_+_40722912_40723001	0.0528943	Rfx3_Rfx1_Rfx4	ENSMUST00000164233.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1 	ENSMUST00000137246.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1 	ENSMUST00000125442.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1
mm10_v2_chr11_-_121039400_121039463	0.052035	Rfx3_Rfx1_Rfx4	ENSMUST00000026159.5|Cd7|ENSMUSG00000025163.6|CD7 antigen
mm10_v2_chr12_+_110841021_110841037	0.0515772	Rfx3_Rfx1_Rfx4	ENSMUST00000181348.1|4921507G05Rik|ENSMUSG00000097650.1|RIKEN cDNA 4921507G05 gene
mm10_v2_chr2_-_167060417_167060430	0.0498809	Rfx3_Rfx1_Rfx4	ENSMUST00000155281.1|Znfx1|ENSMUSG00000039501.8|zinc finger, NFX1-type containing 1
mm10_v2_chr7_-_92637079_92637147	0.0485949	Rfx3_Rfx1_Rfx4	ENSMUST00000056106.7|Ankrd42|ENSMUSG00000041343.12|ankyrin repeat domain 42 	ENSMUST00000118157.1|Ankrd42|ENSMUSG00000041343.12|ankyrin repeat domain 42
mm10_v2_chr5_-_123749371_123749391	0.0470857	Rfx3_Rfx1_Rfx4	ENSMUST00000182955.1|Rsrc2|ENSMUSG00000029422.8|arginine/serine-rich coiled-coil 2 	ENSMUST00000182489.1|Rsrc2|ENSMUSG00000029422.8|arginine/serine-rich coiled-coil 2 	ENSMUST00000050827.7|Rsrc2|ENSMUSG00000029422.8|arginine/serine-rich coiled-coil 2
mm10_v2_chr18_-_24020749_24020813	0.0467098	Rfx3_Rfx1_Rfx4	ENSMUST00000066497.5|Zfp191|ENSMUSG00000051469.8|zinc finger protein 191
mm10_v2_chr8_-_94434259_94434297	0.0457836	Rfx3_Rfx1_Rfx4	ENSMUST00000180445.1|9330175E14Rik|ENSMUSG00000097194.1|RIKEN cDNA 9330175E14 gene
mm10_v2_chr8_-_69890967_69890967	0.0452135	Rfx3_Rfx1_Rfx4	ENSMUST00000152938.1|Yjefn3|ENSMUSG00000048967.9|YjeF N-terminal domain containing 3
mm10_v2_chr14_-_60197173_60197185	0.043827	Rfx3_Rfx1_Rfx4	ENSMUST00000131670.1|Atp8a2|ENSMUSG00000021983.9|ATPase, aminophospholipid transporter-like, class I, type 8A, member 2
mm10_v2_chr7_+_79743142_79743169	0.0417376	Rfx3_Rfx1_Rfx4	ENSMUST00000035622.7|Wdr93|ENSMUSG00000039099.7|WD repeat domain 93
mm10_v2_chr1_+_185454803_185454848	0.0411133	Rfx3_Rfx1_Rfx4	ENSMUST00000061093.6|Slc30a10|ENSMUSG00000026614.6|solute carrier family 30, member 10
mm10_v2_chr4_-_153975038_153975126	0.0405405	Rfx3_Rfx1_Rfx4	ENSMUST00000030893.2|Dffb|ENSMUSG00000029027.2|DNA fragmentation factor, beta subunit
mm10_v2_chr18_+_36348739_36348779	0.038686	Rfx3_Rfx1_Rfx4	ENSMUST00000152804.2|Cystm1|ENSMUSG00000046727.6|cysteine-rich transmembrane module containing 1
mm10_v2_chr5_-_124478330_124478384	0.0375934	Rfx3_Rfx1_Rfx4	ENSMUST00000031347.7|Rilpl2|ENSMUSG00000029401.7|Rab interacting lysosomal protein-like 2
mm10_v2_chr5_+_66260121_66260312	0.0366786	Rfx3_Rfx1_Rfx4	ENSMUST00000031109.3|Nsun7|ENSMUSG00000029206.7|NOL1/NOP2/Sun domain family, member 7 	ENSMUST00000113720.1|Nsun7|ENSMUSG00000029206.7|NOL1/NOP2/Sun domain family, member 7
mm10_v2_chr19_-_4125837_4125863	0.0364195	Rfx3_Rfx1_Rfx4	ENSMUST00000121402.1|Aip|ENSMUSG00000024847.8|aryl-hydrocarbon receptor-interacting protein 	ENSMUST00000117831.1|Aip|ENSMUSG00000024847.8|aryl-hydrocarbon receptor-interacting protein
mm10_v2_chr4_-_121215071_121215114	0.0331684	Rfx3_Rfx1_Rfx4	ENSMUST00000056635.5|Rlf|ENSMUSG00000049878.6|rearranged L-myc fusion sequence
mm10_v2_chr12_+_73997749_73997817	0.0326866	Rfx3_Rfx1_Rfx4	ENSMUST00000110451.2|Syt16|ENSMUSG00000044912.9|synaptotagmin XVI
mm10_v2_chr12_+_110889231_110889305	0.0326658	Rfx3_Rfx1_Rfx4	ENSMUST00000169597.1|Tecpr2|ENSMUSG00000021275.9|tectonin beta-propeller repeat containing 2 	ENSMUST00000165978.1|Tecpr2|ENSMUSG00000021275.9|tectonin beta-propeller repeat containing 2
mm10_v2_chr18_+_35965088_35965110	0.0323625	Rfx3_Rfx1_Rfx4	ENSMUST00000175734.1|Psd2|ENSMUSG00000024347.10|pleckstrin and Sec7 domain containing 2
mm10_v2_chr18_+_36348653_36348728	0.0319659	Rfx3_Rfx1_Rfx4	ENSMUST00000050584.3|Cystm1|ENSMUSG00000046727.6|cysteine-rich transmembrane module containing 1
mm10_v2_chr10_+_58497918_58497970	0.0317483	Rfx3_Rfx1_Rfx4	ENSMUST00000036576.8|Ccdc138|ENSMUSG00000038010.8|coiled-coil domain containing 138
mm10_v2_chr3_-_20035285_20035325	0.0293975	Rfx3_Rfx1_Rfx4	ENSMUST00000108321.1|Hps3|ENSMUSG00000027615.8|Hermansky-Pudlak syndrome 3 homolog (human) 	ENSMUST00000012580.6|Hps3|ENSMUSG00000027615.8|Hermansky-Pudlak syndrome 3 homolog (human)
mm10_v2_chr5_+_135632618_135632647	0.0290302	Rfx3_Rfx1_Rfx4	ENSMUST00000043707.6|Rhbdd2|ENSMUSG00000039917.6|rhomboid domain containing 2
mm10_v2_chr9_-_59486610_59486621	0.0281882	Rfx3_Rfx1_Rfx4	ENSMUST00000171975.1|Arih1|ENSMUSG00000025234.5|ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila)
mm10_v2_chr6_-_33060172_33060252	0.0273674	Rfx3_Rfx1_Rfx4	ENSMUST00000115091.1|Chchd3|ENSMUSG00000053768.7|coiled-coil-helix-coiled-coil-helix domain containing 3 	ENSMUST00000127666.1|Chchd3|ENSMUSG00000053768.7|coiled-coil-helix-coiled-coil-helix domain containing 3
mm10_v2_chr1_-_151428440_151428474	0.024974	Rfx3_Rfx1_Rfx4	ENSMUST00000064771.5|Swt1|ENSMUSG00000052748.8|SWT1 RNA endoribonuclease homolog (S. cerevisiae)
mm10_v2_chr10_-_39133914_39133927	0.0248772	Rfx3_Rfx1_Rfx4	ENSMUST00000135785.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B
mm10_v2_chr15_+_75704280_75704394	0.0241455	Rfx3_Rfx1_Rfx4	ENSMUST00000121137.1|Rhpn1|ENSMUSG00000022580.6|rhophilin, Rho GTPase binding protein 1 	ENSMUST00000023244.5|Rhpn1|ENSMUSG00000022580.6|rhophilin, Rho GTPase binding protein 1
mm10_v2_chrX_-_51205773_51205839	0.0240837	Rfx3_Rfx1_Rfx4	ENSMUST00000114875.1|Mbnl3|ENSMUSG00000036109.11|muscleblind-like 3 (Drosophila)
mm10_v2_chr11_-_76468396_76468473	0.0227145	Rfx3_Rfx1_Rfx4	ENSMUST00000065028.7|Abr|ENSMUSG00000017631.12|active BCR-related gene
mm10_v2_chr17_-_56074932_56075036	0.021804	Rfx3_Rfx1_Rfx4	ENSMUST00000019722.5|Ubxn6|ENSMUSG00000019578.5|UBX domain protein 6
mm10_v2_chr10_+_80299084_80299126	0.0206472	Rfx3_Rfx1_Rfx4	ENSMUST00000154212.1|Apc2|ENSMUSG00000020135.7|adenomatosis polyposis coli 2
mm10_v2_chr7_+_16738410_16738476	0.020367	Rfx3_Rfx1_Rfx4	ENSMUST00000086112.6|Ap2s1|ENSMUSG00000008036.10|adaptor-related protein complex 2, sigma 1 subunit
mm10_v2_chr13_-_24937585_24937691	0.0202651	Rfx3_Rfx1_Rfx4	ENSMUST00000037615.6|Aldh5a1|ENSMUSG00000035936.6|aldhehyde dehydrogenase family 5, subfamily A1
mm10_v2_chr3_-_101287879_101287893	0.0194361	Rfx3_Rfx1_Rfx4	ENSMUST00000152321.1|Cd2|ENSMUSG00000027863.8|CD2 antigen
mm10_v2_chrX_-_133898399_133898429	0.0194018	Rfx3_Rfx1_Rfx4	ENSMUST00000087557.5|Tspan6|ENSMUSG00000067377.6|tetraspanin 6
mm10_v2_chr11_+_52004340_52004366	0.0189143	Rfx3_Rfx1_Rfx4	ENSMUST00000109076.1|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3
mm10_v2_chr13_-_92483996_92484037	0.0179027	Rfx3_Rfx1_Rfx4	ENSMUST00000040106.7|Fam151b|ENSMUSG00000034334.7|family with sequence similarity 151, member B
mm10_v2_chr7_-_126975400_126975510	0.0175722	Rfx3_Rfx1_Rfx4	ENSMUST00000180704.1|D830044I16Rik|ENSMUSG00000097075.1|RIKEN cDNA D830044I16 gene
mm10_v2_chr17_+_85621017_85621031	0.0163461	Rfx3_Rfx1_Rfx4	ENSMUST00000162695.2|Six3|ENSMUSG00000038805.9|sine oculis-related homeobox 3
mm10_v2_chr10_-_62726086_62726128	0.0147905	Rfx3_Rfx1_Rfx4	ENSMUST00000133371.1|Stox1|ENSMUSG00000036923.6|storkhead box 1
mm10_v2_chr4_-_118544010_118544066	0.0144024	Rfx3_Rfx1_Rfx4	ENSMUST00000128098.1|Tmem125|ENSMUSG00000050854.3|transmembrane protein 125
mm10_v2_chr18_+_64887690_64887762	0.0142541	Rfx3_Rfx1_Rfx4	ENSMUST00000163516.1|Nedd4l|ENSMUSG00000024589.9|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm10_v2_chr2_-_18998126_18998202	0.0140305	Rfx3_Rfx1_Rfx4	ENSMUST00000006912.5|Pip4k2a|ENSMUSG00000026737.6|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha
mm10_v2_chr17_-_36951636_36951741	0.0140095	Rfx3_Rfx1_Rfx4	ENSMUST00000040402.7|Ppp1r11|ENSMUSG00000036398.7|protein phosphatase 1, regulatory (inhibitor) subunit 11 	ENSMUST00000174711.1|Ppp1r11|ENSMUSG00000036398.7|protein phosphatase 1, regulatory (inhibitor) subunit 11
mm10_v2_chr8_+_67490758_67490758	0.0112677	Rfx3_Rfx1_Rfx4	ENSMUST00000026677.3|Nat1|ENSMUSG00000025588.3|N-acetyl transferase 1
mm10_v2_chr12_+_110850273_110850302	0.0107091	Rfx3_Rfx1_Rfx4	ENSMUST00000170060.2|Zfp839|ENSMUSG00000021271.4|zinc finger protein 839
mm10_v2_chr8_+_20567716_20567716	0.0102205	Rfx3_Rfx1_Rfx4	ENSMUST00000178995.1|Gm21092|ENSMUSG00000095403.1|predicted gene, 21092
mm10_v2_chr10_+_81606883_81607025	0.00975277	Rfx3_Rfx1_Rfx4	ENSMUST00000119753.1|BC025920|ENSMUSG00000074862.5|cDNA sequence BC025920 	ENSMUST00000121138.1|BC025920|ENSMUSG00000074862.5|cDNA sequence BC025920 	ENSMUST00000099442.3|BC025920|ENSMUSG00000074862.5|cDNA sequence BC025920
mm10_v2_chr10_-_75764265_75764359	0.00918812	Rfx3_Rfx1_Rfx4	ENSMUST00000001712.6|Cabin1|ENSMUSG00000020196.9|calcineurin binding protein 1
mm10_v2_chr4_-_135573623_135573643	0.00751569	Rfx3_Rfx1_Rfx4	ENSMUST00000105855.1|Grhl3|ENSMUSG00000037188.7|grainyhead-like 3 (Drosophila)
mm10_v2_chr2_-_145935014_145935014	0.00691341	Rfx3_Rfx1_Rfx4	ENSMUST00000001818.4|Crnkl1|ENSMUSG00000001767.5|Crn, crooked neck-like 1 (Drosophila)
mm10_v2_chr18_+_74283090_74283131	0.00363699	Rfx3_Rfx1_Rfx4	ENSMUST00000114895.3|Ccdc11|ENSMUSG00000035394.5|coiled-coil domain containing 11
mm10_v2_chr5_-_28210168_28210179	0.00232893	Rfx3_Rfx1_Rfx4	ENSMUST00000117098.1|Cnpy1|ENSMUSG00000044681.12|canopy 1 homolog (zebrafish)
mm10_v2_chr8_-_34965631_34965714	0.00218385	Rfx3_Rfx1_Rfx4	ENSMUST00000033929.4|Tnks|ENSMUSG00000031529.4|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm10_v2_chr12_+_72441852_72441866	0.00174573	Rfx3_Rfx1_Rfx4	ENSMUST00000162159.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr3_-_108085346_108085412	0.00129402	Rfx3_Rfx1_Rfx4	ENSMUST00000078912.5|Ampd2|ENSMUSG00000027889.11|adenosine monophosphate deaminase 2
mm10_v2_chr14_+_44988192_44988203	0.00114366	Rfx3_Rfx1_Rfx4	ENSMUST00000046891.5|Ptger2|ENSMUSG00000037759.5|prostaglandin E receptor 2 (subtype EP2)
