mm10_v2_chr8_-_33747724_33747781	2.85515	Sox2	ENSMUST00000179364.1|Smim18|ENSMUSG00000094500.1|small integral membrane protein 18
mm10_v2_chr4_-_130574150_130574237	2.63315	Sox2	ENSMUST00000105993.3|Nkain1|ENSMUSG00000078532.3|Na+/K+ transporting ATPase interacting 1
mm10_v2_chr5_-_136244865_136244908	2.27733	Sox2	ENSMUST00000005188.9|Sh2b2|ENSMUSG00000005057.9|SH2B adaptor protein 2
mm10_v2_chr11_+_78301529_78301606	2.17223	Sox2	ENSMUST00000045026.3|Spag5|ENSMUSG00000002055.3|sperm associated antigen 5
mm10_v2_chrX_+_48519245_48519285	2.06391	Sox2	ENSMUST00000033430.2|Rab33a|ENSMUSG00000031104.2|RAB33A, member of RAS oncogene family
mm10_v2_chr4_-_129121889_129122063	1.86722	Sox2	ENSMUST00000139450.1|Hpca|ENSMUSG00000028785.6|hippocalcin 	ENSMUST00000125931.1|Hpca|ENSMUSG00000028785.6|hippocalcin 	ENSMUST00000116444.2|Hpca|ENSMUSG00000028785.6|hippocalcin
mm10_v2_chr1_+_66322102_66322119	1.76999	Sox2	ENSMUST00000123647.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr13_+_51645232_51645276	1.73083	Sox2	ENSMUST00000075853.5|Cks2|ENSMUSG00000062248.5|CDC28 protein kinase regulatory subunit 2
mm10_v2_chr6_-_87335758_87335775	1.69502	Sox2	ENSMUST00000042025.9|Antxr1|ENSMUSG00000033420.10|anthrax toxin receptor 1
mm10_v2_chr4_-_32923455_32923530	1.56599	Sox2	ENSMUST00000035719.4|Ankrd6|ENSMUSG00000040183.7|ankyrin repeat domain 6 	ENSMUST00000084749.1|Ankrd6|ENSMUSG00000040183.7|ankyrin repeat domain 6
mm10_v2_chr15_-_79441802_79441860	1.55957	Sox2	ENSMUST00000122044.1|Csnk1e|ENSMUSG00000022433.12|casein kinase 1, epsilon 	ENSMUST00000135519.1|Csnk1e|ENSMUSG00000022433.12|casein kinase 1, epsilon
mm10_v2_chr12_-_54986328_54986342	1.53542	Sox2	ENSMUST00000038926.6|Baz1a|ENSMUSG00000035021.7|bromodomain adjacent to zinc finger domain 1A
mm10_v2_chr6_-_148944750_148944826	1.51318	Sox2	ENSMUST00000111562.1|Fam60a|ENSMUSG00000039985.8|family with sequence similarity 60, member A 	ENSMUST00000081956.5|Fam60a|ENSMUSG00000039985.8|family with sequence similarity 60, member A
mm10_v2_chr15_+_82275197_82275281	1.47736	Sox2	ENSMUST00000116423.1|Sept3|ENSMUSG00000022456.9|septin 3
mm10_v2_chr1_+_180641330_180641374	1.44226	Sox2	ENSMUST00000085804.5|Lin9|ENSMUSG00000058729.7|lin-9 homolog (C. elegans)
mm10_v2_chr5_+_37245792_37245883	1.41993	Sox2	ENSMUST00000031004.7|Crmp1|ENSMUSG00000029121.9|collapsin response mediator protein 1
mm10_v2_chrX_-_16911774_16911774	1.39678	Sox2	ENSMUST00000040134.7|Ndp|ENSMUSG00000040138.7|Norrie disease (pseudoglioma) (human)
mm10_v2_chr12_-_54986363_54986529	1.39185	Sox2	ENSMUST00000173433.1|Baz1a|ENSMUSG00000035021.7|bromodomain adjacent to zinc finger domain 1A 	ENSMUST00000173803.1|Gm20403|ENSMUSG00000092233.1|predicted gene 20403
mm10_v2_chr4_+_48585276_48585365	1.38445	Sox2	ENSMUST00000123476.1|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chr7_+_29303958_29303983	1.36561	Sox2	ENSMUST00000049977.6|Dpf1|ENSMUSG00000030584.7|D4, zinc and double PHD fingers family 1
mm10_v2_chr16_+_17146937_17146985	1.36073	Sox2	ENSMUST00000115706.1|Ydjc|ENSMUSG00000041774.8|YdjC homolog (bacterial) 	ENSMUST00000069064.4|Ydjc|ENSMUSG00000041774.8|YdjC homolog (bacterial)
mm10_v2_chr7_+_141061274_141061311	1.35394	Sox2	ENSMUST00000048002.5|B4galnt4|ENSMUSG00000055629.4|beta-1,4-N-acetyl-galactosaminyl transferase 4
mm10_v2_chr5_-_138171248_138171274	1.35028	Sox2	ENSMUST00000153867.1|Mcm7|ENSMUSG00000029730.10|minichromosome maintenance deficient 7 (S. cerevisiae)
mm10_v2_chr14_-_31019055_31019089	1.34096	Sox2	ENSMUST00000037739.6|Gnl3|ENSMUSG00000042354.6|guanine nucleotide binding protein-like 3 (nucleolar)
mm10_v2_chr17_-_35000848_35000958	1.32019	Sox2	ENSMUST00000166828.3|D17H6S56E-5|ENSMUSG00000091747.3|DNA segment, Chr 17, human D6S56E 5
mm10_v2_chr11_-_78165521_78165589	1.31735	Sox2	ENSMUST00000017530.3|Traf4|ENSMUSG00000017386.4|TNF receptor associated factor 4
mm10_v2_chr1_+_139454747_139454825	1.25664	Sox2	ENSMUST00000053364.8|Aspm|ENSMUSG00000033952.8|asp (abnormal spindle)-like, microcephaly associated (Drosophila) 	ENSMUST00000097554.3|Aspm|ENSMUSG00000033952.8|asp (abnormal spindle)-like, microcephaly associated (Drosophila)
mm10_v2_chr15_+_82274935_82275034	1.2436	Sox2	ENSMUST00000023095.6|Sept3|ENSMUSG00000022456.9|septin 3
mm10_v2_chr1_+_87404916_87404964	1.23371	Sox2	ENSMUST00000173152.1|Gigyf2|ENSMUSG00000048000.9|GRB10 interacting GYF protein 2 	ENSMUST00000173663.1|Gigyf2|ENSMUSG00000048000.9|GRB10 interacting GYF protein 2
mm10_v2_chrX_-_48034842_48034858	1.23069	Sox2	ENSMUST00000039026.7|Apln|ENSMUSG00000037010.7|apelin
mm10_v2_chr4_-_148130678_148130706	1.21046	Sox2	ENSMUST00000030862.4|Draxin|ENSMUSG00000029005.4|dorsal inhibitory axon guidance protein
mm10_v2_chr8_-_84773381_84773427	1.18253	Sox2	ENSMUST00000109764.1|Nfix|ENSMUSG00000001911.10|nuclear factor I/X
mm10_v2_chr7_+_82174796_82174825	1.17027	Sox2	ENSMUST00000032874.7|Sh3gl3|ENSMUSG00000030638.7|SH3-domain GRB2-like 3
mm10_v2_chr2_-_11502025_11502049	1.16505	Sox2	ENSMUST00000114846.2|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
mm10_v2_chr10_+_80150448_80150482	1.13294	Sox2	ENSMUST00000153477.1|Midn|ENSMUSG00000035621.7|midnolin
mm10_v2_chr2_-_65567505_65567627	1.12798	Sox2	ENSMUST00000100069.2|Scn3a|ENSMUSG00000057182.8|sodium channel, voltage-gated, type III, alpha
mm10_v2_chr12_+_24708984_24709029	1.12775	Sox2	ENSMUST00000154588.1|Rrm2|ENSMUSG00000020649.5|ribonucleotide reductase M2
mm10_v2_chr11_-_87108656_87108719	1.12566	Sox2	ENSMUST00000051395.8|Prr11|ENSMUSG00000020493.8|proline rich 11
mm10_v2_chr18_+_34624621_34624629	1.12328	Sox2	ENSMUST00000167161.1|Kif20a|ENSMUSG00000003779.9|kinesin family member 20A
mm10_v2_chr18_+_34625009_34625033	1.10692	Sox2	ENSMUST00000166044.1|Kif20a|ENSMUSG00000003779.9|kinesin family member 20A
mm10_v2_chr1_-_12991109_12991177	1.10641	Sox2	ENSMUST00000115403.2|Slco5a1|ENSMUSG00000025938.10|solute carrier organic anion transporter family, member 5A1 	ENSMUST00000115402.1|Slco5a1|ENSMUSG00000025938.10|solute carrier organic anion transporter family, member 5A1
mm10_v2_chrX_+_71556874_71556946	1.1048	Sox2	ENSMUST00000123100.1|Hmgb3|ENSMUSG00000015217.5|high mobility group box 3
mm10_v2_chr5_+_30711564_30711586	1.10049	Sox2	ENSMUST00000114729.1|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5
mm10_v2_chr14_+_3412614_3412614	1.10007	Sox2	ENSMUST00000170123.1|Gm10409|ENSMUSG00000096488.1|predicted gene 10409
mm10_v2_chr12_-_103773592_103773610	1.09335	Sox2	ENSMUST00000078869.5|Serpina1d|ENSMUSG00000071177.4|serine (or cysteine) peptidase inhibitor, clade A, member 1D
mm10_v2_chr6_+_70726430_70726472	1.08969	Sox2	ENSMUST00000103410.1|Igkc|ENSMUSG00000076609.1|immunoglobulin kappa constant
mm10_v2_chr1_+_6734827_6734874	1.08086	Sox2	ENSMUST00000139838.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr3_-_108402589_108402589	1.07753	Sox2	ENSMUST00000147565.1|Celsr2|ENSMUSG00000068740.7|cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)
mm10_v2_chr7_+_29303938_29303951	1.065	Sox2	ENSMUST00000108231.1|Dpf1|ENSMUSG00000030584.7|D4, zinc and double PHD fingers family 1
mm10_v2_chr19_+_5024006_5024155	1.06161	Sox2	ENSMUST00000025826.5|Slc29a2|ENSMUSG00000024891.5|solute carrier family 29 (nucleoside transporters), member 2
mm10_v2_chr2_-_65567465_65567495	1.04882	Sox2	ENSMUST00000066432.5|Scn3a|ENSMUSG00000057182.8|sodium channel, voltage-gated, type III, alpha
mm10_v2_chr10_+_45067167_45067279	1.03807	Sox2	ENSMUST00000099858.2|Prep|ENSMUSG00000019849.10|prolyl endopeptidase
mm10_v2_chrX_-_143933089_143933142	1.03792	Sox2	ENSMUST00000087313.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr5_+_30711849_30711905	1.03749	Sox2	ENSMUST00000088081.4|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5 	ENSMUST00000101442.3|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5
mm10_v2_chr1_-_64122256_64122321	1.02876	Sox2	ENSMUST00000135075.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous)
mm10_v2_chr18_-_47368446_47368486	1.02803	Sox2	ENSMUST00000076043.6|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 	ENSMUST00000135790.1|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm10_v2_chr1_+_158362261_158362304	1.02216	Sox2	ENSMUST00000046110.9|Astn1|ENSMUSG00000026587.9|astrotactin 1
mm10_v2_chrX_-_105929333_105929382	1.0171	Sox2	ENSMUST00000134507.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human) 	ENSMUST00000137453.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human) 	ENSMUST00000150914.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm10_v2_chr11_-_31370066_31370080	1.01493	Sox2	ENSMUST00000020546.2|Stc2|ENSMUSG00000020303.2|stanniocalcin 2
mm10_v2_chrX_-_104201126_104201185	1.01479	Sox2	ENSMUST00000056502.6|C77370|ENSMUSG00000046449.9|expressed sequence C77370 	ENSMUST00000118314.1|C77370|ENSMUSG00000046449.9|expressed sequence C77370
mm10_v2_chr4_+_134468320_134468409	1.00886	Sox2	ENSMUST00000030636.4|Stmn1|ENSMUSG00000028832.5|stathmin 1 	ENSMUST00000127279.1|Stmn1|ENSMUSG00000028832.5|stathmin 1 	ENSMUST00000105867.1|Stmn1|ENSMUSG00000028832.5|stathmin 1
mm10_v2_chr17_+_12119274_12119348	1.00202	Sox2	ENSMUST00000024594.2|Agpat4|ENSMUSG00000023827.2|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)
mm10_v2_chr12_-_103863551_103863630	0.998856	Sox2	ENSMUST00000085056.6|Serpina1a|ENSMUSG00000066366.8|serine (or cysteine) peptidase inhibitor, clade A, member 1A 	ENSMUST00000072876.5|Serpina1a|ENSMUSG00000066366.8|serine (or cysteine) peptidase inhibitor, clade A, member 1A 	ENSMUST00000124717.1|Serpina1a|ENSMUSG00000066366.8|serine (or cysteine) peptidase inhibitor, clade A, member 1A
mm10_v2_chr12_-_76795489_76795554	0.998474	Sox2	ENSMUST00000082431.3|Gpx2|ENSMUSG00000042808.7|glutathione peroxidase 2
mm10_v2_chr12_-_103904887_103904955	0.993797	Sox2	ENSMUST00000074051.5|Serpina1c|ENSMUSG00000079015.2|serine (or cysteine) peptidase inhibitor, clade A, member 1C
mm10_v2_chr5_+_120649188_120649259	0.987465	Sox2	ENSMUST00000156722.1|Rasal1|ENSMUSG00000029602.5|RAS protein activator like 1 (GAP1 like)
mm10_v2_chr9_-_44721383_44721484	0.979687	Sox2	ENSMUST00000148929.1|Phldb1|ENSMUSG00000048537.9|pleckstrin homology-like domain, family B, member 1 	ENSMUST00000123406.1|Phldb1|ENSMUSG00000048537.9|pleckstrin homology-like domain, family B, member 1
mm10_v2_chr4_+_48585135_48585187	0.979617	Sox2	ENSMUST00000030032.6|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chr2_+_3713478_3713500	0.976109	Sox2	ENSMUST00000115053.2|Fam107b|ENSMUSG00000026655.8|family with sequence similarity 107, member B
mm10_v2_chr1_+_130865669_130865768	0.973174	Sox2	ENSMUST00000038829.5|Faim3|ENSMUSG00000042474.5|Fas apoptotic inhibitory molecule 3
mm10_v2_chr11_+_16951371_16951417	0.965324	Sox2	ENSMUST00000109635.1|Fbxo48|ENSMUSG00000044966.4|F-box protein 48 	ENSMUST00000061327.1|Fbxo48|ENSMUSG00000044966.4|F-box protein 48
mm10_v2_chr12_-_34528844_34528904	0.962164	Sox2	ENSMUST00000110819.2|Hdac9|ENSMUSG00000004698.9|histone deacetylase 9
mm10_v2_chr16_-_4559720_4559747	0.946656	Sox2	ENSMUST00000005862.7|Tfap4|ENSMUSG00000005718.7|transcription factor AP4
mm10_v2_chr12_+_24708241_24708292	0.94261	Sox2	ENSMUST00000020980.5|Rrm2|ENSMUSG00000020649.5|ribonucleotide reductase M2
mm10_v2_chr11_-_77489666_77489687	0.935087	Sox2	ENSMUST00000037593.7|Ankrd13b|ENSMUSG00000037907.10|ankyrin repeat domain 13b 	ENSMUST00000092892.3|Ankrd13b|ENSMUSG00000037907.10|ankyrin repeat domain 13b
mm10_v2_chr4_+_136172367_136172395	0.92451	Sox2	ENSMUST00000061721.5|E2f2|ENSMUSG00000018983.9|E2F transcription factor 2
mm10_v2_chr14_+_61138445_61138495	0.920429	Sox2	ENSMUST00000089394.3|Sacs|ENSMUSG00000048279.11|sacsin 	ENSMUST00000119509.1|Sacs|ENSMUSG00000048279.11|sacsin
mm10_v2_chr4_+_116221590_116221618	0.920346	Sox2	ENSMUST00000147292.1|Pik3r3|ENSMUSG00000028698.7|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)
mm10_v2_chr2_+_155611175_155611216	0.91679	Sox2	ENSMUST00000092995.5|Myh7b|ENSMUSG00000074652.3|myosin, heavy chain 7B, cardiac muscle, beta
mm10_v2_chr6_+_54039558_54039575	0.912243	Sox2	ENSMUST00000046856.7|Chn2|ENSMUSG00000004633.11|chimerin (chimaerin) 2
mm10_v2_chr5_-_138170992_138171033	0.905044	Sox2	ENSMUST00000139983.1|Mcm7|ENSMUSG00000029730.10|minichromosome maintenance deficient 7 (S. cerevisiae)
mm10_v2_chr14_+_3049285_3049285	0.891423	Sox2	ENSMUST00000166494.1|Gm2897|ENSMUSG00000079410.4|predicted gene 2897
mm10_v2_chr3_-_33082004_33082068	0.886282	Sox2	ENSMUST00000108225.3|Pex5l|ENSMUSG00000027674.10|peroxisomal biogenesis factor 5-like
mm10_v2_chr18_-_88927447_88927481	0.876372	Sox2	ENSMUST00000147313.1|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6
mm10_v2_chr5_+_26904682_26904710	0.86376	Sox2	ENSMUST00000120555.1|Dpp6|ENSMUSG00000061576.9|dipeptidylpeptidase 6
mm10_v2_chr17_-_35838208_35838243	0.863451	Sox2	ENSMUST00000134978.2|Tubb5|ENSMUSG00000001525.9|tubulin, beta 5 class I
mm10_v2_chr2_+_156065180_156065282	0.862687	Sox2	ENSMUST00000038860.5|Spag4|ENSMUSG00000038180.5|sperm associated antigen 4
mm10_v2_chr17_-_35838259_35838306	0.861317	Sox2	ENSMUST00000001566.8|Tubb5|ENSMUSG00000001525.9|tubulin, beta 5 class I
mm10_v2_chr11_+_3649759_3649759	0.859147	Sox2	ENSMUST00000140242.1|Morc2a|ENSMUSG00000034543.8|microrchidia 2A
mm10_v2_chr7_+_140968028_140968047	0.850172	Sox2	ENSMUST00000106040.1|Ifitm1|ENSMUSG00000025491.8|interferon induced transmembrane protein 1 	ENSMUST00000026564.8|Ifitm1|ENSMUSG00000025491.8|interferon induced transmembrane protein 1
mm10_v2_chr10_+_80151154_80151375	0.849711	Sox2	ENSMUST00000146516.1|Midn|ENSMUSG00000035621.7|midnolin 	ENSMUST00000144526.1|Midn|ENSMUSG00000035621.7|midnolin
mm10_v2_chr15_-_79441999_79442065	0.847789	Sox2	ENSMUST00000117786.1|Csnk1e|ENSMUSG00000022433.12|casein kinase 1, epsilon 	ENSMUST00000120859.1|Csnk1e|ENSMUSG00000022433.12|casein kinase 1, epsilon
mm10_v2_chr16_-_17125106_17125146	0.84056	Sox2	ENSMUST00000093336.6|2610318N02Rik|ENSMUSG00000049916.9|RIKEN cDNA 2610318N02 gene
mm10_v2_chr7_+_100493337_100493370	0.830381	Sox2	ENSMUST00000126534.1|Ucp2|ENSMUSG00000033685.6|uncoupling protein 2 (mitochondrial, proton carrier)
mm10_v2_chr8_+_123411424_123411562	0.829191	Sox2	ENSMUST00000071134.3|Tubb3|ENSMUSG00000062380.3|tubulin, beta 3 class III
mm10_v2_chr2_-_11502090_11502126	0.828933	Sox2	ENSMUST00000179584.1|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000170196.2|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000171188.2|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000114845.3|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000114844.1|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000100411.2|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
mm10_v2_chr18_+_4994600_4994623	0.827461	Sox2	ENSMUST00000140448.1|Svil|ENSMUSG00000024236.11|supervillin
mm10_v2_chr2_-_146511899_146511979	0.819528	Sox2	ENSMUST00000131824.1|Ralgapa2|ENSMUSG00000037110.13|Ral GTPase activating protein, alpha subunit 2 (catalytic)
mm10_v2_chr4_+_155839724_155839762	0.817684	Sox2	ENSMUST00000030947.3|Mxra8|ENSMUSG00000029070.3|matrix-remodelling associated 8
mm10_v2_chr7_+_29309429_29309513	0.816025	Sox2	ENSMUST00000137848.1|Dpf1|ENSMUSG00000030584.7|D4, zinc and double PHD fingers family 1
mm10_v2_chr1_-_6215292_6215292	0.813438	Sox2	ENSMUST00000097832.1|4732440D04Rik|ENSMUSG00000073741.1|RIKEN cDNA 4732440D04 gene
mm10_v2_chr8_+_69808672_69808742	0.812567	Sox2	ENSMUST00000036074.8|Gmip|ENSMUSG00000036246.8|Gem-interacting protein 	ENSMUST00000123453.1|Gmip|ENSMUSG00000036246.8|Gem-interacting protein
mm10_v2_chr18_+_11633276_11633357	0.812508	Sox2	ENSMUST00000115861.2|Rbbp8|ENSMUSG00000041238.9|retinoblastoma binding protein 8
mm10_v2_chr14_+_4334763_4334763	0.808891	Sox2	ENSMUST00000165466.1|2610042L04Rik|ENSMUSG00000079388.3|RIKEN cDNA 2610042L04 gene
mm10_v2_chr18_+_4921662_4921726	0.808325	Sox2	ENSMUST00000143254.1|Svil|ENSMUSG00000024236.11|supervillin
mm10_v2_chr1_+_6730135_6730176	0.80643	Sox2	ENSMUST00000155921.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr5_+_142702091_142702153	0.806028	Sox2	ENSMUST00000058418.7|Slc29a4|ENSMUSG00000050822.7|solute carrier family 29 (nucleoside transporters), member 4
mm10_v2_chr9_-_78480736_78480841	0.803771	Sox2	ENSMUST00000156988.1|Eef1a1|ENSMUSG00000037742.8|eukaryotic translation elongation factor 1 alpha 1
mm10_v2_chr10_+_7667503_7667558	0.798851	Sox2	ENSMUST00000040135.8|Nup43|ENSMUSG00000040034.9|nucleoporin 43
mm10_v2_chr2_+_157560078_157560130	0.798023	Sox2	ENSMUST00000153739.2|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173595.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000109526.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173839.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173041.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173793.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000172487.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000088484.5|Nnat|ENSMUSG00000067786.10|neuronatin
mm10_v2_chr2_-_64975762_64975795	0.792464	Sox2	ENSMUST00000156765.1|Grb14|ENSMUSG00000026888.8|growth factor receptor bound protein 14
mm10_v2_chr12_-_113422730_113422744	0.779165	Sox2	ENSMUST00000177715.1|Ighm|ENSMUSG00000076617.3|immunoglobulin heavy constant mu 	ENSMUST00000103426.1|Ighm|ENSMUSG00000076617.3|immunoglobulin heavy constant mu
mm10_v2_chr4_+_48585193_48585215	0.775336	Sox2	ENSMUST00000107703.1|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chr4_-_34882919_34882964	0.772971	Sox2	ENSMUST00000098163.2|Zfp292|ENSMUSG00000039967.8|zinc finger protein 292 	ENSMUST00000047950.5|Zfp292|ENSMUSG00000039967.8|zinc finger protein 292
mm10_v2_chr3_-_84040151_84040171	0.763852	Sox2	ENSMUST00000052342.7|D930015E06Rik|ENSMUSG00000033767.9|RIKEN cDNA D930015E06 gene
mm10_v2_chr14_+_31019183_31019214	0.75947	Sox2	ENSMUST00000052239.5|Pbrm1|ENSMUSG00000042323.10|polybromo 1
mm10_v2_chr5_+_105415738_105415849	0.75474	Sox2	ENSMUST00000112707.1|Lrrc8b|ENSMUSG00000070639.4|leucine rich repeat containing 8 family, member B
mm10_v2_chr17_+_8182247_8182247	0.751235	Sox2	ENSMUST00000161898.1|Fgfr1op|ENSMUSG00000069135.5|Fgfr1 oncogene partner
mm10_v2_chr7_-_120145286_120145292	0.750985	Sox2	ENSMUST00000033207.4|Zp2|ENSMUSG00000030911.6|zona pellucida glycoprotein 2
mm10_v2_chrX_+_159459125_159459165	0.750397	Sox2	ENSMUST00000043151.5|Map7d2|ENSMUSG00000041020.8|MAP7 domain containing 2 	ENSMUST00000112470.1|Map7d2|ENSMUSG00000041020.8|MAP7 domain containing 2 	ENSMUST00000156172.1|Map7d2|ENSMUSG00000041020.8|MAP7 domain containing 2
mm10_v2_chrX_-_104201099_104201117	0.749265	Sox2	ENSMUST00000087879.4|C77370|ENSMUSG00000046449.9|expressed sequence C77370
mm10_v2_chr15_-_75905349_75905388	0.74913	Sox2	ENSMUST00000127550.1|Eef1d|ENSMUSG00000055762.9|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
mm10_v2_chr17_-_70851189_70851216	0.735061	Sox2	ENSMUST00000059775.8|Tgif1|ENSMUSG00000047407.11|TGFB-induced factor homeobox 1
mm10_v2_chr3_+_65528457_65528471	0.73453	Sox2	ENSMUST00000130705.1|Tiparp|ENSMUSG00000034640.3|TCDD-inducible poly(ADP-ribose) polymerase
mm10_v2_chr2_-_152951456_152951540	0.732701	Sox2	ENSMUST00000123121.2|Dusp15|ENSMUSG00000042662.10|dual specificity phosphatase-like 15
mm10_v2_chr14_+_5501674_5501674	0.731004	Sox2	ENSMUST00000181562.1|Gm3488|ENSMUSG00000095295.2|predicted gene, 3488
mm10_v2_chr6_+_128375456_128375456	0.730798	Sox2	ENSMUST00000100926.2|4933413G19Rik|ENSMUSG00000079304.3|RIKEN cDNA 4933413G19 gene
mm10_v2_chr2_-_11502067_11502080	0.730221	Sox2	ENSMUST00000028114.6|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000049849.6|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
mm10_v2_chr19_+_44992127_44992136	0.727686	Sox2	ENSMUST00000179305.1|Sema4g|ENSMUSG00000025207.9|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
mm10_v2_chr17_+_34238896_34238911	0.726271	Sox2	ENSMUST00000095342.3|H2-Ob|ENSMUSG00000041538.9|histocompatibility 2, O region beta locus
mm10_v2_chr7_+_75643223_75643319	0.725423	Sox2	ENSMUST00000137959.1|Akap13|ENSMUSG00000066406.8|A kinase (PRKA) anchor protein 13
mm10_v2_chr6_+_15185456_15185563	0.724658	Sox2	ENSMUST00000115472.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000115474.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000031545.7|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000137628.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr18_+_36760214_36760292	0.723918	Sox2	ENSMUST00000049323.7|Wdr55|ENSMUSG00000042660.7|WD repeat domain 55
mm10_v2_chr11_-_97629685_97629716	0.720545	Sox2	ENSMUST00000052281.4|E130012A19Rik|ENSMUSG00000043439.4|RIKEN cDNA E130012A19 gene
mm10_v2_chr4_-_132345686_132345708	0.719858	Sox2	ENSMUST00000030726.6|Rcc1|ENSMUSG00000028896.7|regulator of chromosome condensation 1
mm10_v2_chr17_-_35673517_35673700	0.718	Sox2	ENSMUST00000162266.1|Gtf2h4|ENSMUSG00000001524.8|general transcription factor II H, polypeptide 4 	ENSMUST00000160734.1|Gtf2h4|ENSMUSG00000001524.8|general transcription factor II H, polypeptide 4 	ENSMUST00000159852.1|Gtf2h4|ENSMUSG00000001524.8|general transcription factor II H, polypeptide 4 	ENSMUST00000160039.1|Gtf2h4|ENSMUSG00000001524.8|general transcription factor II H, polypeptide 4
mm10_v2_chr6_+_17749170_17749265	0.717602	Sox2	ENSMUST00000053148.7|St7|ENSMUSG00000029534.11|suppression of tumorigenicity 7 	ENSMUST00000115417.3|St7|ENSMUSG00000029534.11|suppression of tumorigenicity 7
mm10_v2_chr5_-_114091358_114091404	0.714107	Sox2	ENSMUST00000150106.1|Svop|ENSMUSG00000042078.8|SV2 related protein
mm10_v2_chr17_-_31129602_31129646	0.713157	Sox2	ENSMUST00000024827.4|Tff3|ENSMUSG00000024029.4|trefoil factor 3, intestinal
mm10_v2_chr6_-_47594967_47595047	0.708701	Sox2	ENSMUST00000081721.6|Ezh2|ENSMUSG00000029687.10|enhancer of zeste homolog 2 (Drosophila) 	ENSMUST00000114618.1|Ezh2|ENSMUSG00000029687.10|enhancer of zeste homolog 2 (Drosophila) 	ENSMUST00000114616.1|Ezh2|ENSMUSG00000029687.10|enhancer of zeste homolog 2 (Drosophila)
mm10_v2_chr1_+_66321708_66321719	0.707347	Sox2	ENSMUST00000114013.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr7_+_127233044_127233073	0.704508	Sox2	ENSMUST00000106312.3|Zfp553|ENSMUSG00000045598.9|zinc finger protein 553
mm10_v2_chr1_+_158362330_158362411	0.703465	Sox2	ENSMUST00000170718.1|Astn1|ENSMUSG00000026587.9|astrotactin 1
mm10_v2_chr19_-_4334001_4334031	0.703301	Sox2	ENSMUST00000176653.1|Kdm2a|ENSMUSG00000054611.10|lysine (K)-specific demethylase 2A
mm10_v2_chr4_-_132345715_132345747	0.701905	Sox2	ENSMUST00000084250.4|Rcc1|ENSMUSG00000028896.7|regulator of chromosome condensation 1
mm10_v2_chr2_+_55437100_55437182	0.699377	Sox2	ENSMUST00000112633.2|Kcnj3|ENSMUSG00000026824.5|potassium inwardly-rectifying channel, subfamily J, member 3 	ENSMUST00000112632.1|Kcnj3|ENSMUSG00000026824.5|potassium inwardly-rectifying channel, subfamily J, member 3
mm10_v2_chrX_+_134585644_134585698	0.687385	Sox2	ENSMUST00000113211.1|Rpl36a|ENSMUSG00000079435.3|ribosomal protein L36A
mm10_v2_chr4_+_155839675_155839684	0.686746	Sox2	ENSMUST00000141883.1|Mxra8|ENSMUSG00000029070.3|matrix-remodelling associated 8
mm10_v2_chr7_+_112679327_112679373	0.679481	Sox2	ENSMUST00000106638.2|Tead1|ENSMUSG00000055320.10|TEA domain family member 1
mm10_v2_chr9_+_95637601_95637632	0.674663	Sox2	ENSMUST00000015498.8|Pcolce2|ENSMUSG00000015354.8|procollagen C-endopeptidase enhancer 2
mm10_v2_chr10_+_67096456_67096534	0.674155	Sox2	ENSMUST00000174317.1|Jmjd1c|ENSMUSG00000037876.10|jumonji domain containing 1C
mm10_v2_chr12_-_73113407_73113456	0.673585	Sox2	ENSMUST00000175693.1|Six4|ENSMUSG00000034460.8|sine oculis-related homeobox 4
mm10_v2_chr8_+_75109528_75109601	0.671778	Sox2	ENSMUST00000164309.1|Mcm5|ENSMUSG00000005410.5|minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae)
mm10_v2_chr6_-_50382831_50382847	0.669381	Sox2	ENSMUST00000114468.2|Osbpl3|ENSMUSG00000029822.9|oxysterol binding protein-like 3
mm10_v2_chr14_+_101840501_101840554	0.666421	Sox2	ENSMUST00000159026.1|Lmo7|ENSMUSG00000033060.9|LIM domain only 7
mm10_v2_chr2_-_25983056_25983154	0.66268	Sox2	ENSMUST00000127823.1|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1 	ENSMUST00000134882.1|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1
mm10_v2_chr1_-_97761538_97761609	0.65938	Sox2	ENSMUST00000171129.1|Ppip5k2|ENSMUSG00000040648.8|diphosphoinositol pentakisphosphate kinase 2
mm10_v2_chr4_+_116221689_116221698	0.658378	Sox2	ENSMUST00000106490.2|Pik3r3|ENSMUSG00000028698.7|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)
mm10_v2_chr3_+_96830069_96830115	0.657534	Sox2	ENSMUST00000058865.7|Pdzk1|ENSMUSG00000038298.8|PDZ domain containing 1
mm10_v2_chr8_-_70120816_70120873	0.65333	Sox2	ENSMUST00000002412.8|Ncan|ENSMUSG00000002341.8|neurocan
mm10_v2_chr3_-_51560816_51560878	0.647462	Sox2	ENSMUST00000037141.7|Setd7|ENSMUSG00000037111.8|SET domain containing (lysine methyltransferase) 7
mm10_v2_chr18_+_23954668_23954704	0.645331	Sox2	ENSMUST00000060762.4|Zfp397|ENSMUSG00000024276.6|zinc finger protein 397
mm10_v2_chr2_+_181763315_181763335	0.642749	Sox2	ENSMUST00000081125.4|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr7_+_100493795_100493848	0.642365	Sox2	ENSMUST00000129324.1|Ucp2|ENSMUSG00000033685.6|uncoupling protein 2 (mitochondrial, proton carrier)
mm10_v2_chr5_+_3928033_3928178	0.642038	Sox2	ENSMUST00000143365.1|Akap9|ENSMUSG00000040407.11|A kinase (PRKA) anchor protein (yotiao) 9
mm10_v2_chr13_-_8858762_8858829	0.638952	Sox2	ENSMUST00000176329.1|Wdr37|ENSMUSG00000021147.10|WD repeat domain 37
mm10_v2_chr10_+_80330127_80330211	0.638932	Sox2	ENSMUST00000040081.6|Reep6|ENSMUSG00000035504.10|receptor accessory protein 6
mm10_v2_chr5_-_34169409_34169466	0.636998	Sox2	ENSMUST00000060049.6|Haus3|ENSMUSG00000079555.1|HAUS augmin-like complex, subunit 3 	ENSMUST00000042954.7|Poln|ENSMUSG00000045102.8|DNA polymerase N
mm10_v2_chr2_+_4882204_4882252	0.63635	Sox2	ENSMUST00000115019.1|Sephs1|ENSMUSG00000026662.7|selenophosphate synthetase 1
mm10_v2_chr18_-_47368830_47368878	0.634725	Sox2	ENSMUST00000019791.7|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 	ENSMUST00000115449.2|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm10_v2_chr9_-_44735189_44735213	0.63059	Sox2	ENSMUST00000034611.8|Phldb1|ENSMUSG00000048537.9|pleckstrin homology-like domain, family B, member 1
mm10_v2_chr17_+_26414820_26414965	0.630116	Sox2	ENSMUST00000182897.1|Neurl1b|ENSMUSG00000034413.8|neuralized homolog 1b (Drosophila) 	ENSMUST00000183077.1|Neurl1b|ENSMUSG00000034413.8|neuralized homolog 1b (Drosophila) 	ENSMUST00000053020.7|Neurl1b|ENSMUSG00000034413.8|neuralized homolog 1b (Drosophila)
mm10_v2_chr17_+_55445550_55445701	0.627749	Sox2	ENSMUST00000025000.3|St6gal2|ENSMUSG00000024172.4|beta galactoside alpha 2,6 sialyltransferase 2
mm10_v2_chr2_-_51149100_51149115	0.626664	Sox2	ENSMUST00000154545.1|Rnd3|ENSMUSG00000017144.2|Rho family GTPase 3 	ENSMUST00000017288.2|Rnd3|ENSMUSG00000017144.2|Rho family GTPase 3
mm10_v2_chr15_-_58324161_58324178	0.626218	Sox2	ENSMUST00000022985.1|Klhl38|ENSMUSG00000022357.2|kelch-like 38
mm10_v2_chr12_-_98737405_98737515	0.620042	Sox2	ENSMUST00000170188.1|Ptpn21|ENSMUSG00000021009.8|protein tyrosine phosphatase, non-receptor type 21
mm10_v2_chr6_-_113600645_113600715	0.618204	Sox2	ENSMUST00000035870.4|Fancd2os|ENSMUSG00000033963.10|Fancd2 opposite strand
mm10_v2_chr11_+_51261719_51261731	0.617192	Sox2	ENSMUST00000130641.1|Clk4|ENSMUSG00000020385.10|CDC like kinase 4
mm10_v2_chr10_-_117063764_117063814	0.608569	Sox2	ENSMUST00000047672.7|Cct2|ENSMUSG00000034024.7|chaperonin containing Tcp1, subunit 2 (beta)
mm10_v2_chr7_-_78577771_78577975	0.608434	Sox2	ENSMUST00000039438.7|Ntrk3|ENSMUSG00000059146.6|neurotrophic tyrosine kinase, receptor, type 3
mm10_v2_chr19_-_46327121_46327156	0.608138	Sox2	ENSMUST00000041391.4|Psd|ENSMUSG00000037126.9|pleckstrin and Sec7 domain containing 	ENSMUST00000096029.5|Psd|ENSMUSG00000037126.9|pleckstrin and Sec7 domain containing
mm10_v2_chr12_-_101028983_101029042	0.605899	Sox2	ENSMUST00000068411.3|Ccdc88c|ENSMUSG00000021182.8|coiled-coil domain containing 88C 	ENSMUST00000085096.3|Ccdc88c|ENSMUSG00000021182.8|coiled-coil domain containing 88C
mm10_v2_chr7_+_29307924_29308057	0.601868	Sox2	ENSMUST00000108230.1|Dpf1|ENSMUSG00000030584.7|D4, zinc and double PHD fingers family 1 	ENSMUST00000065181.5|Dpf1|ENSMUSG00000030584.7|D4, zinc and double PHD fingers family 1
mm10_v2_chr4_+_154960915_154960930	0.600646	Sox2	ENSMUST00000049621.6|Hes5|ENSMUSG00000048001.7|hairy and enhancer of split 5 (Drosophila)
mm10_v2_chrX_-_105929206_105929321	0.597487	Sox2	ENSMUST00000134381.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human) 	ENSMUST00000154866.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm10_v2_chr7_+_140967221_140967362	0.596568	Sox2	ENSMUST00000106042.2|Ifitm1|ENSMUSG00000025491.8|interferon induced transmembrane protein 1
mm10_v2_chr19_-_10869757_10869940	0.595861	Sox2	ENSMUST00000120524.1|Tmem132a|ENSMUSG00000024736.8|transmembrane protein 132A 	ENSMUST00000025645.7|Tmem132a|ENSMUSG00000024736.8|transmembrane protein 132A
mm10_v2_chr2_+_68861564_68861586	0.591967	Sox2	ENSMUST00000176018.1|Cers6|ENSMUSG00000027035.4|ceramide synthase 6
mm10_v2_chr10_+_80329953_80329987	0.589512	Sox2	ENSMUST00000105358.1|Reep6|ENSMUSG00000035504.10|receptor accessory protein 6 	ENSMUST00000105357.1|Reep6|ENSMUSG00000035504.10|receptor accessory protein 6 	ENSMUST00000105354.1|Reep6|ENSMUSG00000035504.10|receptor accessory protein 6 	ENSMUST00000105355.1|Reep6|ENSMUSG00000035504.10|receptor accessory protein 6
mm10_v2_chrX_+_38189829_38189842	0.588802	Sox2	ENSMUST00000131124.1|Zbtb33|ENSMUSG00000048047.3|zinc finger and BTB domain containing 33
mm10_v2_chr11_+_94044111_94044121	0.588668	Sox2	ENSMUST00000132079.1|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr14_-_6287250_6287250	0.588166	Sox2	ENSMUST00000170104.2|Gm3411|ENSMUSG00000079396.3|predicted gene 3411
mm10_v2_chr3_+_7366598_7366641	0.587517	Sox2	ENSMUST00000028999.6|Pkia|ENSMUSG00000027499.7|protein kinase inhibitor, alpha
mm10_v2_chr7_+_4782940_4782959	0.587335	Sox2	ENSMUST00000013235.4|Tmem190|ENSMUSG00000013091.4|transmembrane protein 190
mm10_v2_chr2_+_3713449_3713474	0.585225	Sox2	ENSMUST00000027965.4|Fam107b|ENSMUSG00000026655.8|family with sequence similarity 107, member B
mm10_v2_chr6_-_128437653_128437730	0.582824	Sox2	ENSMUST00000151796.1|Fkbp4|ENSMUSG00000030357.4|FK506 binding protein 4
mm10_v2_chr17_-_35000746_35000801	0.582241	Sox2	ENSMUST00000163360.1|D17H6S56E-5|ENSMUSG00000091747.3|DNA segment, Chr 17, human D6S56E 5
mm10_v2_chr12_-_103738158_103738158	0.580761	Sox2	ENSMUST00000095450.4|Serpina1b|ENSMUSG00000071178.5|serine (or cysteine) preptidase inhibitor, clade A, member 1B
mm10_v2_chrX_+_13071470_13071499	0.578004	Sox2	ENSMUST00000169594.2|Usp9x|ENSMUSG00000031010.11|ubiquitin specific peptidase 9, X chromosome
mm10_v2_chr7_+_127233227_127233317	0.577	Sox2	ENSMUST00000056232.6|Zfp553|ENSMUSG00000045598.9|zinc finger protein 553
mm10_v2_chr11_+_20647149_20647156	0.576	Sox2	ENSMUST00000109585.1|Sertad2|ENSMUSG00000049800.7|SERTA domain containing 2
mm10_v2_chr15_-_103215285_103215366	0.570311	Sox2	ENSMUST00000122182.1|Cbx5|ENSMUSG00000009575.8|chromobox 5 	ENSMUST00000108813.3|Cbx5|ENSMUSG00000009575.8|chromobox 5 	ENSMUST00000127191.1|Cbx5|ENSMUSG00000009575.8|chromobox 5
mm10_v2_chr11_+_101316917_101316977	0.56908	Sox2	ENSMUST00000151385.1|Psme3|ENSMUSG00000078652.3|proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)
mm10_v2_chr19_-_35924488_35924578	0.566633	Sox2	ENSMUST00000178904.1|A830019P07Rik|ENSMUSG00000094707.1|RIKEN cDNA A830019P07 gene
mm10_v2_chr3_+_81996922_81996922	0.566607	Sox2	ENSMUST00000029641.3|Asic5|ENSMUSG00000028008.4|acid-sensing (proton-gated) ion channel family member 5
mm10_v2_chr7_+_16310412_16310455	0.565034	Sox2	ENSMUST00000136781.1|Bbc3|ENSMUSG00000002083.6|BCL2 binding component 3
mm10_v2_chr2_+_147012996_147013083	0.562617	Sox2	ENSMUST00000028921.5|Xrn2|ENSMUSG00000027433.5|5'-3' exoribonuclease 2
mm10_v2_chr4_+_108460000_108460030	0.562067	Sox2	ENSMUST00000097925.2|Zcchc11|ENSMUSG00000034610.8|zinc finger, CCHC domain containing 11
mm10_v2_chr10_-_82764088_82764144	0.559443	Sox2	ENSMUST00000130911.1|Nfyb|ENSMUSG00000020248.12|nuclear transcription factor-Y beta
mm10_v2_chr2_+_30807826_30807999	0.555872	Sox2	ENSMUST00000041830.3|Ntmt1|ENSMUSG00000026857.3|N-terminal Xaa-Pro-Lys N-methyltransferase 1 	ENSMUST00000152374.1|Ntmt1|ENSMUSG00000026857.3|N-terminal Xaa-Pro-Lys N-methyltransferase 1
mm10_v2_chr16_+_5146985_5147109	0.550844	Sox2	ENSMUST00000165810.1|Sec14l5|ENSMUSG00000091712.1|SEC14-like 5 (S. cerevisiae)
mm10_v2_chr1_-_93342734_93342803	0.550077	Sox2	ENSMUST00000027493.3|Pask|ENSMUSG00000026274.5|PAS domain containing serine/threonine kinase
mm10_v2_chr2_-_77280589_77280648	0.549015	Sox2	ENSMUST00000102659.1|Sestd1|ENSMUSG00000042272.11|SEC14 and spectrin domains 1
mm10_v2_chr14_+_4415448_4415448	0.548489	Sox2	ENSMUST00000168866.1|Gm3164|ENSMUSG00000091418.2|predicted gene 3164
mm10_v2_chr1_+_87213924_87213990	0.548197	Sox2	ENSMUST00000113230.1|Eif4e2|ENSMUSG00000026254.11|eukaryotic translation initiation factor 4E member 2 	ENSMUST00000123735.1|Eif4e2|ENSMUSG00000026254.11|eukaryotic translation initiation factor 4E member 2
mm10_v2_chr15_-_103251465_103251705	0.540671	Sox2	ENSMUST00000133600.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000134554.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000156927.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000149111.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000132836.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2
mm10_v2_chr2_+_3114220_3114225	0.539577	Sox2	ENSMUST00000072955.5|Fam171a1|ENSMUSG00000050530.8|family with sequence similarity 171, member A1
mm10_v2_chr19_-_46039621_46039662	0.536991	Sox2	ENSMUST00000056931.7|Ldb1|ENSMUSG00000025223.8|LIM domain binding 1
mm10_v2_chr4_+_11579647_11579674	0.536194	Sox2	ENSMUST00000180239.1|Fsbp|ENSMUSG00000094595.1|fibrinogen silencer binding protein
mm10_v2_chr2_-_27475600_27475611	0.531562	Sox2	ENSMUST00000147736.1|Brd3|ENSMUSG00000026918.10|bromodomain containing 3
mm10_v2_chr1_+_161142706_161142767	0.529732	Sox2	ENSMUST00000111608.1|Ankrd45|ENSMUSG00000044835.9|ankyrin repeat domain 45 	ENSMUST00000052245.8|Ankrd45|ENSMUSG00000044835.9|ankyrin repeat domain 45
mm10_v2_chr11_-_106579111_106579141	0.52781	Sox2	ENSMUST00000103070.2|Tex2|ENSMUSG00000040548.9|testis expressed gene 2
mm10_v2_chr14_+_73142490_73142564	0.525616	Sox2	ENSMUST00000170370.1|Rcbtb2|ENSMUSG00000022106.8|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 	ENSMUST00000164822.1|Rcbtb2|ENSMUSG00000022106.8|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 	ENSMUST00000165429.1|Rcbtb2|ENSMUSG00000022106.8|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
mm10_v2_chr13_-_77131276_77131329	0.524165	Sox2	ENSMUST00000159300.1|Ankrd32|ENSMUSG00000021597.10|ankyrin repeat domain 32
mm10_v2_chr19_+_4214238_4214363	0.522371	Sox2	ENSMUST00000046506.6|Clcf1|ENSMUSG00000040663.8|cardiotrophin-like cytokine factor 1
mm10_v2_chr2_+_180581220_180581304	0.522105	Sox2	ENSMUST00000169630.1|Mrgbp|ENSMUSG00000027569.9|MRG/MORF4L binding protein
mm10_v2_chr13_+_93304799_93304935	0.521741	Sox2	ENSMUST00000080127.5|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila)
mm10_v2_chr9_+_108826320_108826320	0.516641	Sox2	ENSMUST00000024238.5|Celsr3|ENSMUSG00000023473.6|cadherin, EGF LAG seven-pass G-type receptor 3 (flamingo homolog, Drosophila)
mm10_v2_chr10_+_76147451_76147515	0.513855	Sox2	ENSMUST00000020450.3|Slc5a4a|ENSMUSG00000020229.4|solute carrier family 5, member 4a
mm10_v2_chr3_+_9403049_9403092	0.513828	Sox2	ENSMUST00000180874.1|C030034L19Rik|ENSMUSG00000097365.1|RIKEN cDNA C030034L19 gene 	ENSMUST00000181331.1|C030034L19Rik|ENSMUSG00000097365.1|RIKEN cDNA C030034L19 gene 	ENSMUST00000181930.1|C030034L19Rik|ENSMUSG00000097365.1|RIKEN cDNA C030034L19 gene
mm10_v2_chr11_-_78497734_78497793	0.513059	Sox2	ENSMUST00000061174.6|Sarm1|ENSMUSG00000050132.7|sterile alpha and HEAT/Armadillo motif containing 1
mm10_v2_chr5_+_134676490_134676490	0.510943	Sox2	ENSMUST00000100641.2|Gm10369|ENSMUSG00000072573.2|predicted gene 10369
mm10_v2_chr9_-_75597643_75597656	0.509372	Sox2	ENSMUST00000164100.1|Tmod2|ENSMUSG00000032186.8|tropomodulin 2
mm10_v2_chr8_+_36094828_36094868	0.504388	Sox2	ENSMUST00000110492.1|D8Ertd82e|ENSMUSG00000050271.6|DNA segment, Chr 8, ERATO Doi 82, expressed
mm10_v2_chr16_-_76373014_76373103	0.503843	Sox2	ENSMUST00000054178.1|Nrip1|ENSMUSG00000048490.7|nuclear receptor interacting protein 1
mm10_v2_chr10_-_49788743_49788769	0.50371	Sox2	ENSMUST00000105483.1|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2) 	ENSMUST00000105487.1|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2)
mm10_v2_chr1_+_165788746_165788769	0.503455	Sox2	ENSMUST00000161559.2|Cd247|ENSMUSG00000005763.9|CD247 antigen
mm10_v2_chr12_+_40446050_40446099	0.500197	Sox2	ENSMUST00000037488.6|Dock4|ENSMUSG00000035954.9|dedicator of cytokinesis 4
mm10_v2_chr5_-_138171216_138171246	0.497711	Sox2	ENSMUST00000147920.1|Mcm7|ENSMUSG00000029730.10|minichromosome maintenance deficient 7 (S. cerevisiae)
mm10_v2_chr4_-_99120898_99120935	0.497299	Sox2	ENSMUST00000075836.5|Dock7|ENSMUSG00000028556.9|dedicator of cytokinesis 7
mm10_v2_chr10_+_80300997_80301050	0.496508	Sox2	ENSMUST00000140828.1|Apc2|ENSMUSG00000020135.7|adenomatosis polyposis coli 2 	ENSMUST00000138909.1|Apc2|ENSMUSG00000020135.7|adenomatosis polyposis coli 2
mm10_v2_chr9_+_110132015_110132102	0.495561	Sox2	ENSMUST00000088716.5|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 	ENSMUST00000111969.1|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 	ENSMUST00000035057.7|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 	ENSMUST00000111966.1|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 	ENSMUST00000111968.1|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
mm10_v2_chr2_-_151009364_151009398	0.495513	Sox2	ENSMUST00000109896.1|Ninl|ENSMUSG00000068115.7|ninein-like
mm10_v2_chr7_+_99466004_99466032	0.493875	Sox2	ENSMUST00000037359.2|Klhl35|ENSMUSG00000035298.2|kelch-like 35
mm10_v2_chr2_-_176917518_176917518	0.493499	Sox2	ENSMUST00000108931.2|Gm14296|ENSMUSG00000074527.5|predicted gene 14296
mm10_v2_chr13_-_104109576_104109619	0.49324	Sox2	ENSMUST00000109315.3|Nln|ENSMUSG00000021710.10|neurolysin (metallopeptidase M3 family)
mm10_v2_chr3_-_95228636_95228719	0.491764	Sox2	ENSMUST00000065482.5|Mllt11|ENSMUSG00000053192.5|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11
mm10_v2_chr9_-_72111755_72111821	0.491	Sox2	ENSMUST00000183492.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12 	ENSMUST00000184523.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12 	ENSMUST00000034755.6|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr1_+_59482133_59482179	0.487506	Sox2	ENSMUST00000114246.2|Fzd7|ENSMUSG00000041075.7|frizzled homolog 7 (Drosophila) 	ENSMUST00000037105.6|Fzd7|ENSMUSG00000041075.7|frizzled homolog 7 (Drosophila)
mm10_v2_chr11_+_115381906_115381933	0.486967	Sox2	ENSMUST00000053288.5|Cdr2l|ENSMUSG00000050910.5|cerebellar degeneration-related protein 2-like
mm10_v2_chr4_+_136284708_136284775	0.486946	Sox2	ENSMUST00000130223.1|Zfp46|ENSMUSG00000051351.8|zinc finger protein 46
mm10_v2_chr3_+_145987835_145987901	0.486731	Sox2	ENSMUST00000039517.6|Syde2|ENSMUSG00000036863.7|synapse defective 1, Rho GTPase, homolog 2 (C. elegans)
mm10_v2_chrX_+_143518671_143518703	0.486521	Sox2	ENSMUST00000134402.1|Pak3|ENSMUSG00000031284.10|p21 protein (Cdc42/Rac)-activated kinase 3
mm10_v2_chr6_-_99726392_99726414	0.486196	Sox2	ENSMUST00000032152.8|Prok2|ENSMUSG00000030069.9|prokineticin 2 	ENSMUST00000101120.4|Prok2|ENSMUSG00000030069.9|prokineticin 2 	ENSMUST00000008273.6|Prok2|ENSMUSG00000030069.9|prokineticin 2
mm10_v2_chr4_+_9269285_9269335	0.483956	Sox2	ENSMUST00000038841.7|Clvs1|ENSMUSG00000041216.9|clavesin 1
mm10_v2_chr14_-_7568566_7568566	0.483466	Sox2	ENSMUST00000163790.1|Gm3558|ENSMUSG00000079364.3|predicted gene 3558
mm10_v2_chr19_-_40271506_40271616	0.4828	Sox2	ENSMUST00000068439.6|Pdlim1|ENSMUSG00000055044.6|PDZ and LIM domain 1 (elfin)
mm10_v2_chr14_+_31019159_31019178	0.482634	Sox2	ENSMUST00000112094.1|Pbrm1|ENSMUSG00000042323.10|polybromo 1 	ENSMUST00000144009.1|Pbrm1|ENSMUSG00000042323.10|polybromo 1
mm10_v2_chr13_-_54749849_54749893	0.481459	Sox2	ENSMUST00000135343.1|Gprin1|ENSMUSG00000069227.4|G protein-regulated inducer of neurite outgrowth 1
mm10_v2_chr3_+_88532314_88532396	0.481399	Sox2	ENSMUST00000172699.1|Mex3a|ENSMUSG00000074480.4|mex3 homolog A (C. elegans)
mm10_v2_chr7_+_130692532_130692575	0.48009	Sox2	ENSMUST00000033141.6|Tacc2|ENSMUSG00000030852.9|transforming, acidic coiled-coil containing protein 2
mm10_v2_chr9_+_77754526_77754541	0.479048	Sox2	ENSMUST00000034905.8|Gclc|ENSMUSG00000032350.8|glutamate-cysteine ligase, catalytic subunit
mm10_v2_chr6_-_136781718_136781806	0.478403	Sox2	ENSMUST00000078095.6|Gucy2c|ENSMUSG00000042638.8|guanylate cyclase 2c 	ENSMUST00000032338.7|Gucy2c|ENSMUSG00000042638.8|guanylate cyclase 2c
mm10_v2_chr6_+_29281138_29281148	0.477647	Sox2	ENSMUST00000115286.2|Fam71f2|ENSMUSG00000079652.2|family with sequence similarity 71, member F2
mm10_v2_chr3_-_141982224_141982264	0.47699	Sox2	ENSMUST00000029948.8|Bmpr1b|ENSMUSG00000052430.9|bone morphogenetic protein receptor, type 1B
mm10_v2_chr11_-_51606840_51606857	0.476791	Sox2	ENSMUST00000074669.3|Hnrnpab|ENSMUSG00000020358.11|heterogeneous nuclear ribonucleoprotein A/B 	ENSMUST00000101249.2|Hnrnpab|ENSMUSG00000020358.11|heterogeneous nuclear ribonucleoprotein A/B 	ENSMUST00000109103.3|Hnrnpab|ENSMUSG00000020358.11|heterogeneous nuclear ribonucleoprotein A/B
mm10_v2_chr10_-_61452658_61452813	0.476332	Sox2	ENSMUST00000167087.1|Eif4ebp2|ENSMUSG00000020091.8|eukaryotic translation initiation factor 4E binding protein 2 	ENSMUST00000020288.7|Eif4ebp2|ENSMUSG00000020091.8|eukaryotic translation initiation factor 4E binding protein 2
mm10_v2_chr5_-_52190484_52190524	0.474853	Sox2	ENSMUST00000031061.7|Dhx15|ENSMUSG00000029169.7|DEAH (Asp-Glu-Ala-His) box polypeptide 15
mm10_v2_chr15_-_79742518_79742562	0.472558	Sox2	ENSMUST00000089311.4|Sun2|ENSMUSG00000042524.7|Sad1 and UNC84 domain containing 2 	ENSMUST00000046259.7|Sun2|ENSMUSG00000042524.7|Sad1 and UNC84 domain containing 2
mm10_v2_chr18_-_77565050_77565162	0.472355	Sox2	ENSMUST00000182153.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000182146.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000026494.7|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000182024.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165
mm10_v2_chr17_-_79355082_79355103	0.471296	Sox2	ENSMUST00000068958.7|Cdc42ep3|ENSMUSG00000036533.8|CDC42 effector protein (Rho GTPase binding) 3
mm10_v2_chr3_+_68572245_68572392	0.469565	Sox2	ENSMUST00000170788.2|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr2_+_167015193_167015336	0.468025	Sox2	ENSMUST00000018143.9|Ddx27|ENSMUSG00000017999.10|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 	ENSMUST00000176066.1|Ddx27|ENSMUSG00000017999.10|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 	ENSMUST00000150571.1|Ddx27|ENSMUSG00000017999.10|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
mm10_v2_chr1_+_15287259_15287259	0.467625	Sox2	ENSMUST00000175681.1|Kcnb2|ENSMUSG00000092083.3|potassium voltage gated channel, Shab-related subfamily, member 2
mm10_v2_chr11_-_100762928_100762936	0.467477	Sox2	ENSMUST00000107360.2|Hcrt|ENSMUSG00000045471.4|hypocretin 	ENSMUST00000055083.3|Hcrt|ENSMUSG00000045471.4|hypocretin
mm10_v2_chr7_+_16875302_16875392	0.467057	Sox2	ENSMUST00000108493.1|Dact3|ENSMUSG00000078794.3|dapper homolog 3, antagonist of beta-catenin (xenopus)
mm10_v2_chr3_-_94436574_94436616	0.466776	Sox2	ENSMUST00000029787.4|Oaz3|ENSMUSG00000028141.4|ornithine decarboxylase antizyme 3
mm10_v2_chr8_+_124793061_124793092	0.465273	Sox2	ENSMUST00000041106.7|Trim67|ENSMUSG00000036913.8|tripartite motif-containing 67
mm10_v2_chr9_-_110645328_110645368	0.463406	Sox2	ENSMUST00000149089.1|Nbeal2|ENSMUSG00000056724.8|neurobeachin-like 2
mm10_v2_chr6_+_51470633_51470746	0.461254	Sox2	ENSMUST00000114445.1|Cbx3|ENSMUSG00000029836.9|chromobox 3 	ENSMUST00000114446.1|Cbx3|ENSMUSG00000029836.9|chromobox 3 	ENSMUST00000141711.1|Cbx3|ENSMUSG00000029836.9|chromobox 3
mm10_v2_chr7_+_16309577_16309641	0.460369	Sox2	ENSMUST00000002152.6|Bbc3|ENSMUSG00000002083.6|BCL2 binding component 3
mm10_v2_chr8_-_84800024_84800283	0.457934	Sox2	ENSMUST00000126806.1|Nfix|ENSMUSG00000001911.10|nuclear factor I/X 	ENSMUST00000076715.6|Nfix|ENSMUSG00000001911.10|nuclear factor I/X
mm10_v2_chr2_+_72297895_72297912	0.457089	Sox2	ENSMUST00000144111.1|Zak|ENSMUSG00000004085.8|sterile alpha motif and leucine zipper containing kinase AZK
mm10_v2_chrX_-_57393020_57393040	0.454911	Sox2	ENSMUST00000143310.1|Rbmx|ENSMUSG00000031134.10|RNA binding motif protein, X chromosome 	ENSMUST00000098470.2|Rbmx|ENSMUSG00000031134.10|RNA binding motif protein, X chromosome 	ENSMUST00000114726.1|Rbmx|ENSMUSG00000031134.10|RNA binding motif protein, X chromosome
mm10_v2_chr18_-_43687695_43687773	0.453605	Sox2	ENSMUST00000082254.6|Jakmip2|ENSMUSG00000024502.9|janus kinase and microtubule interacting protein 2
mm10_v2_chr1_+_39900883_39900963	0.453129	Sox2	ENSMUST00000163854.2|Map4k4|ENSMUSG00000026074.8|mitogen-activated protein kinase kinase kinase kinase 4 	ENSMUST00000168431.1|Map4k4|ENSMUSG00000026074.8|mitogen-activated protein kinase kinase kinase kinase 4
mm10_v2_chr17_-_23835743_23835743	0.452476	Sox2	ENSMUST00000059906.6|Prss33|ENSMUSG00000049620.8|protease, serine, 33
mm10_v2_chr7_-_115824699_115824752	0.45069	Sox2	ENSMUST00000169129.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr7_-_116038734_116038750	0.448839	Sox2	ENSMUST00000166877.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr6_+_65042575_65042667	0.447459	Sox2	ENSMUST00000031984.6|Smarcad1|ENSMUSG00000029920.7|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
mm10_v2_chr1_+_74588347_74588383	0.4471	Sox2	ENSMUST00000113732.1|Bcs1l|ENSMUSG00000026172.6|BCS1-like (yeast)
mm10_v2_chr11_+_49663603_49663621	0.447074	Sox2	ENSMUST00000043873.3|Scgb3a1|ENSMUSG00000064057.6|secretoglobin, family 3A, member 1 	ENSMUST00000076006.4|Scgb3a1|ENSMUSG00000064057.6|secretoglobin, family 3A, member 1
mm10_v2_chr9_+_59291565_59291577	0.445831	Sox2	ENSMUST00000026266.7|Adpgk|ENSMUSG00000025236.10|ADP-dependent glucokinase
mm10_v2_chr15_-_8710734_8710764	0.445128	Sox2	ENSMUST00000005493.7|Slc1a3|ENSMUSG00000005360.8|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm10_v2_chr12_+_108605757_108605814	0.444773	Sox2	ENSMUST00000109854.2|Evl|ENSMUSG00000021262.8|Ena-vasodilator stimulated phosphoprotein
mm10_v2_chr4_+_136284658_136284686	0.44432	Sox2	ENSMUST00000144217.1|Zfp46|ENSMUSG00000051351.8|zinc finger protein 46
mm10_v2_chr14_+_25607797_25607838	0.443677	Sox2	ENSMUST00000160229.1|Zmiz1|ENSMUSG00000007817.8|zinc finger, MIZ-type containing 1
mm10_v2_chr11_+_76217608_76217636	0.441393	Sox2	ENSMUST00000040806.4|Dbil5|ENSMUSG00000038057.4|diazepam binding inhibitor-like 5
mm10_v2_chr3_+_88553716_88553806	0.440162	Sox2	ENSMUST00000008748.6|Ubqln4|ENSMUSG00000008604.6|ubiquilin 4
mm10_v2_chr17_-_25273155_25273265	0.439629	Sox2	ENSMUST00000173231.1|Ube2i|ENSMUSG00000015120.9|ubiquitin-conjugating enzyme E2I
mm10_v2_chr13_+_52583437_52583474	0.438198	Sox2	ENSMUST00000118756.1|Syk|ENSMUSG00000021457.8|spleen tyrosine kinase
mm10_v2_chr9_+_3335470_3335501	0.437616	Sox2	ENSMUST00000053407.5|Alkbh8|ENSMUSG00000025899.7|alkB, alkylation repair homolog 8 (E. coli)
mm10_v2_chr15_-_79742493_79742511	0.437587	Sox2	ENSMUST00000100439.3|Sun2|ENSMUSG00000042524.7|Sad1 and UNC84 domain containing 2
mm10_v2_chr2_+_138278481_138278531	0.436839	Sox2	ENSMUST00000075410.4|Btbd3|ENSMUSG00000062098.5|BTB (POZ) domain containing 3
mm10_v2_chr13_-_49147931_49148037	0.435832	Sox2	ENSMUST00000162581.1|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000110097.2|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000049265.8|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000035538.6|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000110096.1|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000091623.3|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2
mm10_v2_chr18_+_68300351_68300422	0.435261	Sox2	ENSMUST00000009679.4|Rnmt|ENSMUSG00000009535.7|RNA (guanine-7-) methyltransferase 	ENSMUST00000131075.1|Rnmt|ENSMUSG00000009535.7|RNA (guanine-7-) methyltransferase 	ENSMUST00000025427.7|Rnmt|ENSMUSG00000009535.7|RNA (guanine-7-) methyltransferase 	ENSMUST00000139111.1|Rnmt|ENSMUSG00000009535.7|RNA (guanine-7-) methyltransferase
mm10_v2_chr13_+_93304940_93305278	0.434214	Sox2	ENSMUST00000109497.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109498.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000060490.4|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109492.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109496.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109495.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila)
mm10_v2_chr2_+_156065738_156065760	0.433833	Sox2	ENSMUST00000137966.1|Spag4|ENSMUSG00000038180.5|sperm associated antigen 4
mm10_v2_chr2_-_152951688_152951700	0.433071	Sox2	ENSMUST00000109811.3|Dusp15|ENSMUSG00000042662.10|dual specificity phosphatase-like 15
mm10_v2_chr8_+_70493156_70493167	0.432012	Sox2	ENSMUST00000008032.7|Crlf1|ENSMUSG00000007888.9|cytokine receptor-like factor 1
mm10_v2_chr11_-_70220969_70221027	0.431897	Sox2	ENSMUST00000060010.2|Slc16a13|ENSMUSG00000044367.6|solute carrier family 16 (monocarboxylic acid transporters), member 13
mm10_v2_chr2_+_32621750_32621774	0.431539	Sox2	ENSMUST00000113278.2|Ak1|ENSMUSG00000026817.8|adenylate kinase 1
mm10_v2_chr15_+_88751649_88751661	0.431302	Sox2	ENSMUST00000041297.8|Zbed4|ENSMUSG00000034333.9|zinc finger, BED domain containing 4
mm10_v2_chr1_+_66386968_66386999	0.430592	Sox2	ENSMUST00000145419.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr7_+_79273201_79273270	0.430125	Sox2	ENSMUST00000037315.6|Abhd2|ENSMUSG00000039202.6|abhydrolase domain containing 2
mm10_v2_chr7_-_89517576_89517587	0.428935	Sox2	ENSMUST00000041761.5|Prss23|ENSMUSG00000039405.6|protease, serine, 23
mm10_v2_chr8_+_124793013_124793056	0.428452	Sox2	ENSMUST00000167588.1|Trim67|ENSMUSG00000036913.8|tripartite motif-containing 67
mm10_v2_chr16_+_27388869_27388980	0.428111	Sox2	ENSMUST00000100026.3|Ccdc50|ENSMUSG00000038127.8|coiled-coil domain containing 50 	ENSMUST00000039443.7|Ccdc50|ENSMUSG00000038127.8|coiled-coil domain containing 50 	ENSMUST00000096127.4|Ccdc50|ENSMUSG00000038127.8|coiled-coil domain containing 50
mm10_v2_chr8_+_11728105_11728143	0.427438	Sox2	ENSMUST00000110909.2|Arhgef7|ENSMUSG00000031511.8|Rho guanine nucleotide exchange factor (GEF7) 	ENSMUST00000033908.6|Arhgef7|ENSMUSG00000031511.8|Rho guanine nucleotide exchange factor (GEF7)
mm10_v2_chr9_-_88482532_88482587	0.427015	Sox2	ENSMUST00000173801.1|Syncrip|ENSMUSG00000032423.6|synaptotagmin binding, cytoplasmic RNA interacting protein 	ENSMUST00000069221.5|Syncrip|ENSMUSG00000032423.6|synaptotagmin binding, cytoplasmic RNA interacting protein 	ENSMUST00000172508.1|Syncrip|ENSMUSG00000032423.6|synaptotagmin binding, cytoplasmic RNA interacting protein
mm10_v2_chrX_+_153139941_153140011	0.427008	Sox2	ENSMUST00000039720.4|Rragb|ENSMUSG00000041658.6|Ras-related GTP binding B 	ENSMUST00000144175.2|Rragb|ENSMUSG00000041658.6|Ras-related GTP binding B
mm10_v2_chr12_+_8674391_8674470	0.426717	Sox2	ENSMUST00000163569.1|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila) 	ENSMUST00000169089.1|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila)
mm10_v2_chr14_-_49783327_49783394	0.426307	Sox2	ENSMUST00000118129.1|3632451O06Rik|ENSMUSG00000036242.8|RIKEN cDNA 3632451O06 gene 	ENSMUST00000036972.6|3632451O06Rik|ENSMUSG00000036242.8|RIKEN cDNA 3632451O06 gene
mm10_v2_chr18_+_56707725_56707940	0.42608	Sox2	ENSMUST00000025486.8|Lmnb1|ENSMUSG00000024590.8|lamin B1
mm10_v2_chr16_-_89818338_89818356	0.424771	Sox2	ENSMUST00000164263.2|Tiam1|ENSMUSG00000002489.9|T cell lymphoma invasion and metastasis 1
mm10_v2_chr4_-_132049058_132049156	0.424212	Sox2	ENSMUST00000105981.2|Epb4.1|ENSMUSG00000028906.9|erythrocyte protein band 4.1 	ENSMUST00000084253.3|Epb4.1|ENSMUSG00000028906.9|erythrocyte protein band 4.1 	ENSMUST00000141291.1|Epb4.1|ENSMUSG00000028906.9|erythrocyte protein band 4.1
mm10_v2_chr10_-_39163794_39163794	0.424198	Sox2	ENSMUST00000076713.4|Wisp3|ENSMUSG00000062074.6|WNT1 inducible signaling pathway protein 3
mm10_v2_chr5_-_136198908_136198970	0.422966	Sox2	ENSMUST00000149151.1|Prkrip1|ENSMUSG00000039737.5|Prkr interacting protein 1 (IL11 inducible) 	ENSMUST00000151786.1|Prkrip1|ENSMUSG00000039737.5|Prkr interacting protein 1 (IL11 inducible)
mm10_v2_chr9_+_120929216_120929251	0.42228	Sox2	ENSMUST00000130466.1|Ctnnb1|ENSMUSG00000006932.10|catenin (cadherin associated protein), beta 1
mm10_v2_chr17_+_34238914_34238964	0.420994	Sox2	ENSMUST00000167280.1|H2-Ob|ENSMUSG00000041538.9|histocompatibility 2, O region beta locus
mm10_v2_chr19_-_5894100_5894155	0.419607	Sox2	ENSMUST00000055911.4|Tigd3|ENSMUSG00000044390.4|tigger transposable element derived 3
mm10_v2_chr3_-_122619442_122619553	0.418606	Sox2	ENSMUST00000162947.1|Fnbp1l|ENSMUSG00000039735.9|formin binding protein 1-like
mm10_v2_chr4_-_91376433_91376477	0.418386	Sox2	ENSMUST00000107109.2|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000107111.2|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000107120.1|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chr17_+_12916329_12916447	0.41739	Sox2	ENSMUST00000089024.6|Tcp1|ENSMUSG00000068039.6|t-complex protein 1 	ENSMUST00000151287.1|Tcp1|ENSMUSG00000068039.6|t-complex protein 1 	ENSMUST00000143961.1|Tcp1|ENSMUSG00000068039.6|t-complex protein 1
mm10_v2_chrX_+_93675088_93675161	0.416112	Sox2	ENSMUST00000045898.3|Pcyt1b|ENSMUSG00000035246.10|phosphate cytidylyltransferase 1, choline, beta isoform
mm10_v2_chr17_+_35001282_35001347	0.415591	Sox2	ENSMUST00000174260.1|Vars|ENSMUSG00000007029.10|valyl-tRNA synthetase
mm10_v2_chr2_+_27676440_27676454	0.414912	Sox2	ENSMUST00000129514.1|Rxra|ENSMUSG00000015846.8|retinoid X receptor alpha
mm10_v2_chr3_-_88762244_88762384	0.414734	Sox2	ENSMUST00000183267.1|Syt11|ENSMUSG00000068923.8|synaptotagmin XI
mm10_v2_chr12_-_112829351_112829426	0.413924	Sox2	ENSMUST00000062092.5|Cdca4|ENSMUSG00000047832.8|cell division cycle associated 4
mm10_v2_chr12_+_84996309_84996419	0.413484	Sox2	ENSMUST00000168977.1|Ylpm1|ENSMUSG00000021244.9|YLP motif containing 1 	ENSMUST00000021670.8|Ylpm1|ENSMUSG00000021244.9|YLP motif containing 1
mm10_v2_chr15_-_81729864_81729919	0.410382	Sox2	ENSMUST00000171115.1|Rangap1|ENSMUSG00000022391.9|RAN GTPase activating protein 1 	ENSMUST00000170134.1|Rangap1|ENSMUSG00000022391.9|RAN GTPase activating protein 1 	ENSMUST00000052374.5|Rangap1|ENSMUSG00000022391.9|RAN GTPase activating protein 1
mm10_v2_chr5_+_108065696_108065738	0.409648	Sox2	ENSMUST00000172045.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2
mm10_v2_chr2_-_6721890_6721928	0.409443	Sox2	ENSMUST00000114927.2|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr11_-_120598346_120598405	0.408911	Sox2	ENSMUST00000026125.2|Alyref|ENSMUSG00000025134.2|Aly/REF export factor
mm10_v2_chr1_+_165788681_165788728	0.408634	Sox2	ENSMUST00000161971.1|Cd247|ENSMUSG00000005763.9|CD247 antigen 	ENSMUST00000178336.1|Cd247|ENSMUSG00000005763.9|CD247 antigen 	ENSMUST00000005907.5|Cd247|ENSMUSG00000005763.9|CD247 antigen 	ENSMUST00000027849.4|Cd247|ENSMUSG00000005763.9|CD247 antigen
mm10_v2_chr6_-_83527452_83527500	0.407159	Sox2	ENSMUST00000141904.1|Actg2|ENSMUSG00000059430.8|actin, gamma 2, smooth muscle, enteric
mm10_v2_chr9_-_88522876_88522929	0.406383	Sox2	ENSMUST00000180563.2|Snhg5|ENSMUSG00000097195.2|small nucleolar RNA host gene 5 	ENSMUST00000183030.1|Snhg5|ENSMUSG00000097195.2|small nucleolar RNA host gene 5 	ENSMUST00000182232.1|Snhg5|ENSMUSG00000097195.2|small nucleolar RNA host gene 5
mm10_v2_chr11_+_3330781_3330812	0.397844	Sox2	ENSMUST00000136536.1|Pik3ip1|ENSMUSG00000034614.8|phosphoinositide-3-kinase interacting protein 1 	ENSMUST00000093399.4|Pik3ip1|ENSMUSG00000034614.8|phosphoinositide-3-kinase interacting protein 1
mm10_v2_chr1_-_38821215_38821215	0.395996	Sox2	ENSMUST00000039612.4|Lonrf2|ENSMUSG00000048814.4|LON peptidase N-terminal domain and ring finger 2
mm10_v2_chrX_-_105929397_105929408	0.394636	Sox2	ENSMUST00000113573.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human) 	ENSMUST00000130980.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm10_v2_chr7_+_87246649_87246661	0.394607	Sox2	ENSMUST00000068829.5|Nox4|ENSMUSG00000030562.10|NADPH oxidase 4 	ENSMUST00000032781.7|Nox4|ENSMUSG00000030562.10|NADPH oxidase 4
mm10_v2_chr6_-_121003099_121003153	0.394397	Sox2	ENSMUST00000098457.2|Mical3|ENSMUSG00000051586.8|microtubule associated monooxygenase, calponin and LIM domain containing 3 	ENSMUST00000150503.1|Mical3|ENSMUSG00000051586.8|microtubule associated monooxygenase, calponin and LIM domain containing 3
mm10_v2_chr1_-_158356258_158356313	0.392967	Sox2	ENSMUST00000004133.8|Brinp2|ENSMUSG00000004031.8|bone morphogenic protein/retinoic acid inducible neural-specific 2
mm10_v2_chr4_-_99120856_99120894	0.392434	Sox2	ENSMUST00000030286.7|Dock7|ENSMUSG00000028556.9|dedicator of cytokinesis 7
mm10_v2_chr13_+_93304066_93304138	0.392294	Sox2	ENSMUST00000109493.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila)
mm10_v2_chr11_+_4883186_4883222	0.39207	Sox2	ENSMUST00000139737.1|Nipsnap1|ENSMUSG00000034285.9|4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)
mm10_v2_chr11_-_88718078_88718104	0.39018	Sox2	ENSMUST00000092794.5|Msi2|ENSMUSG00000069769.7|musashi RNA-binding protein 2
mm10_v2_chr9_+_74976096_74976177	0.389243	Sox2	ENSMUST00000081746.5|Fam214a|ENSMUSG00000034858.9|family with sequence similarity 214, member A
mm10_v2_chr11_-_78497458_78497539	0.38915	Sox2	ENSMUST00000108287.3|Sarm1|ENSMUSG00000050132.7|sterile alpha and HEAT/Armadillo motif containing 1
mm10_v2_chr9_-_72111827_72111895	0.389068	Sox2	ENSMUST00000183404.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12 	ENSMUST00000184783.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chrX_-_12128386_12128412	0.387187	Sox2	ENSMUST00000145872.1|Bcor|ENSMUSG00000040363.8|BCL6 interacting corepressor
mm10_v2_chr6_-_99666762_99666786	0.387127	Sox2	ENSMUST00000032151.2|Eif4e3|ENSMUSG00000093661.1|eukaryotic translation initiation factor 4E member 3
mm10_v2_chr1_+_171250416_171250433	0.386541	Sox2	ENSMUST00000111315.1|Adamts4|ENSMUSG00000006403.6|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4 	ENSMUST00000006570.5|Adamts4|ENSMUSG00000006403.6|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4
mm10_v2_chr11_-_120990871_120991037	0.384854	Sox2	ENSMUST00000154483.1|Csnk1d|ENSMUSG00000025162.11|casein kinase 1, delta
mm10_v2_chr15_+_59648644_59648687	0.384323	Sox2	ENSMUST00000118228.1|Trib1|ENSMUSG00000032501.8|tribbles homolog 1 (Drosophila)
mm10_v2_chr14_+_50924968_50925004	0.384221	Sox2	ENSMUST00000049411.5|Apex1|ENSMUSG00000035960.7|apurinic/apyrimidinic endonuclease 1 	ENSMUST00000136753.1|Apex1|ENSMUSG00000035960.7|apurinic/apyrimidinic endonuclease 1 	ENSMUST00000154288.1|Apex1|ENSMUSG00000035960.7|apurinic/apyrimidinic endonuclease 1
mm10_v2_chr6_+_17491216_17491242	0.383918	Sox2	ENSMUST00000080469.5|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr2_+_52857844_52857868	0.383394	Sox2	ENSMUST00000090952.4|Fmnl2|ENSMUSG00000036053.10|formin-like 2 	ENSMUST00000049483.6|Fmnl2|ENSMUSG00000036053.10|formin-like 2 	ENSMUST00000050719.6|Fmnl2|ENSMUSG00000036053.10|formin-like 2
mm10_v2_chrX_-_57392962_57392988	0.382906	Sox2	ENSMUST00000114730.1|Rbmx|ENSMUSG00000031134.10|RNA binding motif protein, X chromosome
mm10_v2_chr7_+_45216671_45216695	0.382778	Sox2	ENSMUST00000134420.1|Tead2|ENSMUSG00000030796.9|TEA domain family member 2
mm10_v2_chr11_+_109485606_109485713	0.381898	Sox2	ENSMUST00000106697.1|Arsg|ENSMUSG00000020604.7|arylsulfatase G
mm10_v2_chr19_-_24961545_24961630	0.380004	Sox2	ENSMUST00000025815.8|Cbwd1|ENSMUSG00000024878.8|COBW domain containing 1
mm10_v2_chr8_-_69184177_69184240	0.379968	Sox2	ENSMUST00000185176.1|Lzts1|ENSMUSG00000036306.5|leucine zipper, putative tumor suppressor 1
mm10_v2_chr10_+_94550852_94550876	0.379571	Sox2	ENSMUST00000148910.1|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3 	ENSMUST00000117460.1|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3
mm10_v2_chr1_+_191717834_191717904	0.379249	Sox2	ENSMUST00000110855.1|Lpgat1|ENSMUSG00000026623.10|lysophosphatidylglycerol acyltransferase 1 	ENSMUST00000133076.1|Lpgat1|ENSMUSG00000026623.10|lysophosphatidylglycerol acyltransferase 1
mm10_v2_chr14_-_8309770_8309795	0.378879	Sox2	ENSMUST00000121887.1|Fam107a|ENSMUSG00000021750.9|family with sequence similarity 107, member A 	ENSMUST00000036070.8|Fam107a|ENSMUSG00000021750.9|family with sequence similarity 107, member A 	ENSMUST00000137133.1|Fam107a|ENSMUSG00000021750.9|family with sequence similarity 107, member A
mm10_v2_chr2_-_25983236_25983290	0.378416	Sox2	ENSMUST00000114167.2|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1 	ENSMUST00000091268.4|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1 	ENSMUST00000183461.1|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1
mm10_v2_chr2_+_92185438_92185463	0.377684	Sox2	ENSMUST00000128781.2|Phf21a|ENSMUSG00000058318.9|PHD finger protein 21A
mm10_v2_chr9_+_119402444_119402501	0.377165	Sox2	ENSMUST00000035093.8|Acvr2b|ENSMUSG00000061393.7|activin receptor IIB 	ENSMUST00000165044.1|Acvr2b|ENSMUSG00000061393.7|activin receptor IIB
mm10_v2_chr6_+_124916863_124916863	0.376003	Sox2	ENSMUST00000069553.2|A230083G16Rik|ENSMUSG00000055818.2|RIKEN cDNA A230083G16 gene
mm10_v2_chr17_+_26252903_26252914	0.372731	Sox2	ENSMUST00000025023.7|Luc7l|ENSMUSG00000024188.9|Luc7 homolog (S. cerevisiae)-like
mm10_v2_chr2_+_30078213_30078213	0.371792	Sox2	ENSMUST00000150770.1|Pkn3|ENSMUSG00000026785.8|protein kinase N3
mm10_v2_chr6_-_39557830_39557867	0.371222	Sox2	ENSMUST00000036877.3|Dennd2a|ENSMUSG00000038456.3|DENN/MADD domain containing 2A 	ENSMUST00000154149.1|Dennd2a|ENSMUSG00000038456.3|DENN/MADD domain containing 2A
mm10_v2_chr15_-_96699698_96699717	0.370667	Sox2	ENSMUST00000023099.6|Slc38a2|ENSMUSG00000022462.6|solute carrier family 38, member 2
mm10_v2_chr5_+_21646033_21646057	0.369977	Sox2	ENSMUST00000095495.2|Armc10|ENSMUSG00000038525.10|armadillo repeat containing 10
mm10_v2_chr11_-_76217490_76217664	0.369773	Sox2	ENSMUST00000102500.4|Gemin4|ENSMUSG00000049396.6|gem (nuclear organelle) associated protein 4
mm10_v2_chr17_-_12769605_12769700	0.369331	Sox2	ENSMUST00000024599.7|Igf2r|ENSMUSG00000023830.7|insulin-like growth factor 2 receptor
mm10_v2_chr10_+_31313375_31313420	0.369284	Sox2	ENSMUST00000000304.6|Hddc2|ENSMUSG00000000295.6|HD domain containing 2
mm10_v2_chr9_+_55150050_55150083	0.368624	Sox2	ENSMUST00000122441.1|Ube2q2|ENSMUSG00000032307.10|ubiquitin-conjugating enzyme E2Q (putative) 2
mm10_v2_chr7_-_78578308_78578408	0.367563	Sox2	ENSMUST00000039431.7|Ntrk3|ENSMUSG00000059146.6|neurotrophic tyrosine kinase, receptor, type 3
mm10_v2_chr17_+_35000987_35001097	0.367458	Sox2	ENSMUST00000087315.7|Vars|ENSMUSG00000007029.10|valyl-tRNA synthetase 	ENSMUST00000173584.1|Vars|ENSMUSG00000007029.10|valyl-tRNA synthetase
mm10_v2_chr14_+_73142591_73142723	0.366758	Sox2	ENSMUST00000170368.1|Rcbtb2|ENSMUSG00000022106.8|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
mm10_v2_chr18_-_43059418_43059471	0.36455	Sox2	ENSMUST00000025377.7|Ppp2r2b|ENSMUSG00000024500.12|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform
mm10_v2_chr11_-_76577701_76577727	0.363768	Sox2	ENSMUST00000176179.1|Abr|ENSMUSG00000017631.12|active BCR-related gene
mm10_v2_chr4_+_108459389_108459451	0.363055	Sox2	ENSMUST00000106673.1|Zcchc11|ENSMUSG00000034610.8|zinc finger, CCHC domain containing 11 	ENSMUST00000043368.5|Zcchc11|ENSMUSG00000034610.8|zinc finger, CCHC domain containing 11
mm10_v2_chr14_-_5389049_5389049	0.360296	Sox2	ENSMUST00000177986.1|Gm3500|ENSMUSG00000096003.1|predicted gene 3500
mm10_v2_chr15_-_8710409_8710498	0.359451	Sox2	ENSMUST00000157065.1|Slc1a3|ENSMUSG00000005360.8|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm10_v2_chr1_+_6730051_6730117	0.35915	Sox2	ENSMUST00000043578.6|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000131467.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000150761.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000151281.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr2_+_24949747_24949801	0.358456	Sox2	ENSMUST00000028350.3|Zmynd19|ENSMUSG00000026974.6|zinc finger, MYND domain containing 19
mm10_v2_chr7_+_82175156_82175199	0.356671	Sox2	ENSMUST00000180243.1|Sh3gl3|ENSMUSG00000030638.7|SH3-domain GRB2-like 3
mm10_v2_chr1_+_180945898_180945962	0.356247	Sox2	ENSMUST00000160508.1|Tmem63a|ENSMUSG00000026519.10|transmembrane protein 63a 	ENSMUST00000160536.1|Tmem63a|ENSMUSG00000026519.10|transmembrane protein 63a
mm10_v2_chr11_+_75679542_75679637	0.356203	Sox2	ENSMUST00000147718.1|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian)
mm10_v2_chr5_+_148265202_148265263	0.355575	Sox2	ENSMUST00000110515.2|Mtus2|ENSMUSG00000029651.10|microtubule associated tumor suppressor candidate 2
mm10_v2_chr16_-_11066141_11066165	0.355166	Sox2	ENSMUST00000162323.1|Litaf|ENSMUSG00000022500.8|LPS-induced TN factor
mm10_v2_chr4_+_148130883_148130915	0.354343	Sox2	ENSMUST00000084129.2|Mad2l2|ENSMUSG00000029003.5|MAD2 mitotic arrest deficient-like 2
mm10_v2_chr3_+_14533867_14533889	0.353644	Sox2	ENSMUST00000163660.1|Lrrcc1|ENSMUSG00000027550.8|leucine rich repeat and coiled-coil domain containing 1
mm10_v2_chr16_-_38522662_38522683	0.351865	Sox2	ENSMUST00000002925.5|Timmdc1|ENSMUSG00000002846.9|translocase of inner mitochondrial membrane domain containing 1
mm10_v2_chr2_+_181767040_181767073	0.351031	Sox2	ENSMUST00000108756.1|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr11_-_94973447_94973489	0.350905	Sox2	ENSMUST00000100551.4|Sgca|ENSMUSG00000001508.9|sarcoglycan, alpha (dystrophin-associated glycoprotein) 	ENSMUST00000152042.1|Sgca|ENSMUSG00000001508.9|sarcoglycan, alpha (dystrophin-associated glycoprotein)
mm10_v2_chr2_-_156111954_156111978	0.349908	Sox2	ENSMUST00000059647.5|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12 	ENSMUST00000109604.2|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12 	ENSMUST00000142960.2|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000138068.1|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12 	ENSMUST00000136296.2|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000128499.1|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12
mm10_v2_chr10_-_82623190_82623248	0.349886	Sox2	ENSMUST00000183363.1|1190007I07Rik|ENSMUSG00000063320.5|RIKEN cDNA 1190007I07 gene 	ENSMUST00000079648.5|1190007I07Rik|ENSMUSG00000063320.5|RIKEN cDNA 1190007I07 gene 	ENSMUST00000185168.1|1190007I07Rik|ENSMUSG00000063320.5|RIKEN cDNA 1190007I07 gene
mm10_v2_chr12_-_26415256_26415303	0.348692	Sox2	ENSMUST00000020971.6|Rnf144a|ENSMUSG00000020642.6|ring finger protein 144A 	ENSMUST00000062149.4|Rnf144a|ENSMUSG00000020642.6|ring finger protein 144A
mm10_v2_chr14_+_101840602_101840677	0.348682	Sox2	ENSMUST00000159314.1|Lmo7|ENSMUSG00000033060.9|LIM domain only 7
mm10_v2_chr6_+_134035691_134035717	0.348681	Sox2	ENSMUST00000081028.6|Etv6|ENSMUSG00000030199.10|ets variant gene 6 (TEL oncogene) 	ENSMUST00000111963.1|Etv6|ENSMUSG00000030199.10|ets variant gene 6 (TEL oncogene)
mm10_v2_chr7_-_63938862_63938933	0.347351	Sox2	ENSMUST00000063694.8|Klf13|ENSMUSG00000052040.9|Kruppel-like factor 13
mm10_v2_chr17_+_34325658_34325679	0.347016	Sox2	ENSMUST00000050325.8|H2-Eb2|ENSMUSG00000067341.5|histocompatibility 2, class II antigen E beta2
mm10_v2_chr10_-_63244135_63244170	0.344536	Sox2	ENSMUST00000054837.3|1700120B22Rik|ENSMUSG00000045391.3|RIKEN cDNA 1700120B22 gene
mm10_v2_chr13_+_60602182_60602231	0.343357	Sox2	ENSMUST00000044083.7|Dapk1|ENSMUSG00000021559.7|death associated protein kinase 1
mm10_v2_chr6_-_50261743_50261788	0.343153	Sox2	ENSMUST00000101405.3|Dfna5|ENSMUSG00000029821.9|deafness, autosomal dominant 5 (human) 	ENSMUST00000165099.1|Dfna5|ENSMUSG00000029821.9|deafness, autosomal dominant 5 (human) 	ENSMUST00000170142.1|Dfna5|ENSMUSG00000029821.9|deafness, autosomal dominant 5 (human)
mm10_v2_chr8_+_123332676_123332740	0.342188	Sox2	ENSMUST00000010298.6|Spire2|ENSMUSG00000010154.6|spire homolog 2 (Drosophila)
mm10_v2_chr2_+_31950257_31950281	0.340376	Sox2	ENSMUST00000001920.7|Aif1l|ENSMUSG00000001864.7|allograft inflammatory factor 1-like
mm10_v2_chr3_+_13946368_13946379	0.339966	Sox2	ENSMUST00000171075.1|Ralyl|ENSMUSG00000039717.9|RALY RNA binding protein-like 	ENSMUST00000108372.2|Ralyl|ENSMUSG00000039717.9|RALY RNA binding protein-like
mm10_v2_chr2_-_146511992_146512015	0.339938	Sox2	ENSMUST00000109986.2|Ralgapa2|ENSMUSG00000037110.13|Ral GTPase activating protein, alpha subunit 2 (catalytic)
mm10_v2_chr9_-_65021645_65021717	0.339891	Sox2	ENSMUST00000036615.5|Ptplad1|ENSMUSG00000033629.5|protein tyrosine phosphatase-like A domain containing 1
mm10_v2_chr19_+_8967031_8967050	0.339367	Sox2	ENSMUST00000052248.7|Eef1g|ENSMUSG00000071644.4|eukaryotic translation elongation factor 1 gamma
mm10_v2_chr2_+_181767283_181767322	0.338515	Sox2	ENSMUST00000108757.2|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr5_+_148265307_148265345	0.338304	Sox2	ENSMUST00000110514.1|Mtus2|ENSMUSG00000029651.10|microtubule associated tumor suppressor candidate 2
mm10_v2_chr13_+_51100810_51100933	0.338218	Sox2	ENSMUST00000095797.5|Spin1|ENSMUSG00000021395.10|spindlin 1
mm10_v2_chr12_+_8674681_8674765	0.337113	Sox2	ENSMUST00000168361.1|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila) 	ENSMUST00000169750.1|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila) 	ENSMUST00000163730.1|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila)
mm10_v2_chr19_-_37330613_37330613	0.33599	Sox2	ENSMUST00000131070.1|Ide|ENSMUSG00000056999.8|insulin degrading enzyme
mm10_v2_chr13_-_97747399_97747414	0.335803	Sox2	ENSMUST00000144993.1|5330416C01Rik|ENSMUSG00000054944.7|RIKEN cDNA 5330416C01 gene
mm10_v2_chr9_-_72111651_72111712	0.333315	Sox2	ENSMUST00000185117.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr8_-_4217459_4217503	0.332734	Sox2	ENSMUST00000176227.1|BC068157|ENSMUSG00000064125.8|cDNA sequence BC068157
mm10_v2_chr19_-_46039442_46039481	0.332378	Sox2	ENSMUST00000137771.1|Ldb1|ENSMUSG00000025223.8|LIM domain binding 1
mm10_v2_chr7_+_119900099_119900108	0.332298	Sox2	ENSMUST00000106516.1|Lyrm1|ENSMUSG00000030922.5|LYR motif containing 1
mm10_v2_chr3_+_14533788_14533815	0.331628	Sox2	ENSMUST00000108370.2|Lrrcc1|ENSMUSG00000027550.8|leucine rich repeat and coiled-coil domain containing 1
mm10_v2_chr7_+_141949846_141949868	0.331084	Sox2	ENSMUST00000172652.1|Brsk2|ENSMUSG00000053046.8|BR serine/threonine kinase 2
mm10_v2_chr14_+_69029289_69029414	0.33043	Sox2	ENSMUST00000014957.8|Stc1|ENSMUSG00000014813.8|stanniocalcin 1
mm10_v2_chr17_-_78684262_78684352	0.33016	Sox2	ENSMUST00000145480.1|Strn|ENSMUSG00000024077.9|striatin, calmodulin binding protein
mm10_v2_chr6_-_67037399_67037417	0.329205	Sox2	ENSMUST00000043098.6|Gadd45a|ENSMUSG00000036390.6|growth arrest and DNA-damage-inducible 45 alpha
mm10_v2_chr15_-_91049823_91049948	0.32712	Sox2	ENSMUST00000088614.5|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A 	ENSMUST00000100304.4|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A 	ENSMUST00000067205.8|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A 	ENSMUST00000109288.2|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A 	ENSMUST00000109287.2|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A
mm10_v2_chr6_+_86371489_86371583	0.327103	Sox2	ENSMUST00000089558.5|Snrpg|ENSMUSG00000057278.6|small nuclear ribonucleoprotein polypeptide G
mm10_v2_chr4_+_127021311_127021339	0.326381	Sox2	ENSMUST00000030623.7|Sfpq|ENSMUSG00000028820.7|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
mm10_v2_chr15_-_88954400_88954446	0.325354	Sox2	ENSMUST00000109371.1|Ttll8|ENSMUSG00000022388.8|tubulin tyrosine ligase-like family, member 8
mm10_v2_chr9_+_69397897_69397928	0.324451	Sox2	ENSMUST00000034761.8|Narg2|ENSMUSG00000032235.9|NMDA receptor-regulated gene 2 	ENSMUST00000125938.1|Narg2|ENSMUSG00000032235.9|NMDA receptor-regulated gene 2
mm10_v2_chr14_-_26638183_26638183	0.324292	Sox2	ENSMUST00000166902.1|4930570N19Rik|ENSMUSG00000090861.1|RIKEN cDNA 4930570N19 gene
mm10_v2_chr11_+_98203314_98203335	0.323819	Sox2	ENSMUST00000003203.7|Cdk12|ENSMUSG00000003119.8|cyclin-dependent kinase 12 	ENSMUST00000107538.1|Cdk12|ENSMUSG00000003119.8|cyclin-dependent kinase 12
mm10_v2_chr11_-_11890368_11890379	0.322595	Sox2	ENSMUST00000155690.1|Ddc|ENSMUSG00000020182.10|dopa decarboxylase
mm10_v2_chr16_+_17070220_17070239	0.321542	Sox2	ENSMUST00000141959.1|Ypel1|ENSMUSG00000022773.10|yippee-like 1 (Drosophila)
mm10_v2_chr17_-_34615776_34615793	0.319453	Sox2	ENSMUST00000168353.2|Egfl8|ENSMUSG00000015467.8|EGF-like domain 8
mm10_v2_chr9_-_60838200_60838200	0.319195	Sox2	ENSMUST00000063858.7|Gm9869|ENSMUSG00000052143.7|predicted gene 9869
mm10_v2_chr9_-_59486323_59486415	0.317213	Sox2	ENSMUST00000165322.1|Arih1|ENSMUSG00000025234.5|ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila)
mm10_v2_chr1_+_37997975_37998010	0.317076	Sox2	ENSMUST00000027252.7|Eif5b|ENSMUSG00000026083.7|eukaryotic translation initiation factor 5B
mm10_v2_chr13_-_54749627_54749697	0.316242	Sox2	ENSMUST00000099506.1|Gprin1|ENSMUSG00000069227.4|G protein-regulated inducer of neurite outgrowth 1
mm10_v2_chr1_+_135584773_135584773	0.315756	Sox2	ENSMUST00000067468.4|Gm4793|ENSMUSG00000054412.4|predicted gene 4793
mm10_v2_chr11_-_96005872_96005952	0.314336	Sox2	ENSMUST00000013559.2|Igf2bp1|ENSMUSG00000013415.3|insulin-like growth factor 2 mRNA binding protein 1
mm10_v2_chr9_+_21029373_21029442	0.314056	Sox2	ENSMUST00000001040.5|Icam4|ENSMUSG00000001014.5|intercellular adhesion molecule 4, Landsteiner-Wiener blood group
mm10_v2_chr2_+_18677002_18677053	0.313238	Sox2	ENSMUST00000028071.6|Bmi1|ENSMUSG00000026739.7|Bmi1 polycomb ring finger oncogene
mm10_v2_chr5_-_140649018_140649052	0.312728	Sox2	ENSMUST00000042661.3|Ttyh3|ENSMUSG00000036565.3|tweety homolog 3 (Drosophila)
mm10_v2_chr7_+_105375053_105375098	0.312449	Sox2	ENSMUST00000106805.2|Gm5901|ENSMUSG00000078611.2|predicted gene 5901
mm10_v2_chr14_+_75845093_75845165	0.311612	Sox2	ENSMUST00000110894.2|Tpt1|ENSMUSG00000060126.8|tumor protein, translationally-controlled 1
mm10_v2_chr12_+_3891728_3891801	0.310809	Sox2	ENSMUST00000172689.1|Dnmt3a|ENSMUSG00000020661.9|DNA methyltransferase 3A 	ENSMUST00000111186.1|Dnmt3a|ENSMUSG00000020661.9|DNA methyltransferase 3A
mm10_v2_chr2_-_37443096_37443178	0.310246	Sox2	ENSMUST00000102789.2|Zbtb26|ENSMUSG00000050714.8|zinc finger and BTB domain containing 26 	ENSMUST00000067043.4|Zbtb26|ENSMUSG00000050714.8|zinc finger and BTB domain containing 26 	ENSMUST00000112932.1|Zbtb6|ENSMUSG00000066798.3|zinc finger and BTB domain containing 6
mm10_v2_chr17_-_35673738_35673750	0.30855	Sox2	ENSMUST00000001565.8|Gtf2h4|ENSMUSG00000001524.8|general transcription factor II H, polypeptide 4
mm10_v2_chr4_-_141599835_141600032	0.30845	Sox2	ENSMUST00000141518.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000127455.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000105784.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000147785.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1
mm10_v2_chr9_+_66946057_66946143	0.308206	Sox2	ENSMUST00000040917.7|Rps27l|ENSMUSG00000036781.7|ribosomal protein S27-like 	ENSMUST00000127896.1|Rps27l|ENSMUSG00000036781.7|ribosomal protein S27-like
mm10_v2_chr2_-_6884940_6884957	0.307981	Sox2	ENSMUST00000183091.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000182851.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr7_+_28180226_28180266	0.307192	Sox2	ENSMUST00000172467.1|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm10_v2_chr6_+_54039935_54040039	0.307035	Sox2	ENSMUST00000114403.1|Chn2|ENSMUSG00000004633.11|chimerin (chimaerin) 2
mm10_v2_chr4_+_107830958_107830985	0.305528	Sox2	ENSMUST00000106731.2|Lrp8|ENSMUSG00000028613.8|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
mm10_v2_chr1_-_139377094_139377110	0.304611	Sox2	ENSMUST00000131586.1|Crb1|ENSMUSG00000063681.8|crumbs homolog 1 (Drosophila) 	ENSMUST00000145244.1|Crb1|ENSMUSG00000063681.8|crumbs homolog 1 (Drosophila)
mm10_v2_chr4_-_41723129_41723179	0.304492	Sox2	ENSMUST00000171641.1|Dctn3|ENSMUSG00000028447.5|dynactin 3 	ENSMUST00000030158.4|Dctn3|ENSMUSG00000028447.5|dynactin 3
mm10_v2_chr15_+_76343504_76343558	0.304145	Sox2	ENSMUST00000023210.6|Cyc1|ENSMUSG00000022551.7|cytochrome c-1
mm10_v2_chr9_-_57262591_57262609	0.303913	Sox2	ENSMUST00000034846.5|1700017B05Rik|ENSMUSG00000032300.6|RIKEN cDNA 1700017B05 gene
mm10_v2_chr7_+_100494044_100494088	0.302384	Sox2	ENSMUST00000153287.1|Ucp2|ENSMUSG00000033685.6|uncoupling protein 2 (mitochondrial, proton carrier)
mm10_v2_chr3_+_53463666_53463681	0.301552	Sox2	ENSMUST00000058577.4|Proser1|ENSMUSG00000049504.11|proline and serine rich 1
mm10_v2_chr3_+_98382538_98382553	0.301459	Sox2	ENSMUST00000178372.1|Zfp697|ENSMUSG00000050064.8|zinc finger protein 697
mm10_v2_chr1_+_175631996_175632001	0.300615	Sox2	ENSMUST00000040250.8|Kmo|ENSMUSG00000039783.9|kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)
mm10_v2_chr10_-_94944578_94944578	0.300169	Sox2	ENSMUST00000099337.3|Plxnc1|ENSMUSG00000074785.4|plexin C1
mm10_v2_chr16_+_17070127_17070215	0.298837	Sox2	ENSMUST00000115729.1|Ypel1|ENSMUSG00000022773.10|yippee-like 1 (Drosophila)
mm10_v2_chr5_-_91402905_91402994	0.298702	Sox2	ENSMUST00000121044.2|Btc|ENSMUSG00000082361.3|betacellulin, epidermal growth factor family member
mm10_v2_chr11_-_19018956_19018973	0.298531	Sox2	ENSMUST00000068264.7|Meis1|ENSMUSG00000020160.12|Meis homeobox 1 	ENSMUST00000144988.1|Meis1|ENSMUSG00000020160.12|Meis homeobox 1 	ENSMUST00000185131.1|Meis1|ENSMUSG00000020160.12|Meis homeobox 1
mm10_v2_chr19_-_30175414_30175436	0.297589	Sox2	ENSMUST00000025778.7|Gldc|ENSMUSG00000024827.9|glycine decarboxylase
mm10_v2_chr15_-_98953541_98953560	0.296364	Sox2	ENSMUST00000097014.5|Tuba1a|ENSMUSG00000072235.5|tubulin, alpha 1A
mm10_v2_chr6_+_83034173_83034252	0.294633	Sox2	ENSMUST00000000707.2|Loxl3|ENSMUSG00000000693.4|lysyl oxidase-like 3 	ENSMUST00000101257.3|Loxl3|ENSMUSG00000000693.4|lysyl oxidase-like 3
mm10_v2_chr19_-_40588374_40588426	0.29455	Sox2	ENSMUST00000175932.1|Aldh18a1|ENSMUSG00000025007.7|aldehyde dehydrogenase 18 family, member A1 	ENSMUST00000176955.1|Aldh18a1|ENSMUSG00000025007.7|aldehyde dehydrogenase 18 family, member A1 	ENSMUST00000149476.2|Aldh18a1|ENSMUSG00000025007.7|aldehyde dehydrogenase 18 family, member A1
mm10_v2_chr17_-_56935388_56935504	0.294433	Sox2	ENSMUST00000025053.8|Mllt1|ENSMUSG00000024212.8|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1
mm10_v2_chr8_+_22411340_22411460	0.293623	Sox2	ENSMUST00000033934.3|Mrps31|ENSMUSG00000031533.3|mitochondrial ribosomal protein S31
mm10_v2_chr4_+_140701466_140701509	0.29347	Sox2	ENSMUST00000038893.5|Rcc2|ENSMUSG00000040945.7|regulator of chromosome condensation 2 	ENSMUST00000138808.1|Rcc2|ENSMUSG00000040945.7|regulator of chromosome condensation 2
mm10_v2_chr9_-_37147257_37147323	0.291703	Sox2	ENSMUST00000039674.5|Pknox2|ENSMUSG00000035934.9|Pbx/knotted 1 homeobox 2 	ENSMUST00000080754.5|Pknox2|ENSMUSG00000035934.9|Pbx/knotted 1 homeobox 2
mm10_v2_chr4_-_107253513_107253532	0.290422	Sox2	ENSMUST00000030360.4|Lrrc42|ENSMUSG00000028617.4|leucine rich repeat containing 42
mm10_v2_chr6_+_34598500_34598529	0.290374	Sox2	ENSMUST00000079391.3|Cald1|ENSMUSG00000029761.10|caldesmon 1 	ENSMUST00000142512.1|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr2_+_181187247_181187347	0.28933	Sox2	ENSMUST00000016488.6|Ppdpf|ENSMUSG00000016344.8|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene 	ENSMUST00000108841.1|Ppdpf|ENSMUSG00000016344.8|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene
mm10_v2_chrX_+_109095359_109095391	0.289163	Sox2	ENSMUST00000033598.8|Sh3bgrl|ENSMUSG00000031246.8|SH3-binding domain glutamic acid-rich protein like
mm10_v2_chr19_-_10240689_10240751	0.288099	Sox2	ENSMUST00000088013.5|Myrf|ENSMUSG00000036098.9|myelin regulatory factor
mm10_v2_chr9_-_110117303_110117353	0.287712	Sox2	ENSMUST00000136969.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm10_v2_chr2_-_126675461_126675509	0.285961	Sox2	ENSMUST00000103226.3|Gabpb1|ENSMUSG00000027361.9|GA repeat binding protein, beta 1 	ENSMUST00000110424.2|Gabpb1|ENSMUSG00000027361.9|GA repeat binding protein, beta 1
mm10_v2_chr6_+_34598530_34598587	0.283832	Sox2	ENSMUST00000115027.1|Cald1|ENSMUSG00000029761.10|caldesmon 1 	ENSMUST00000115026.1|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr4_+_6191093_6191122	0.283241	Sox2	ENSMUST00000029907.5|Ubxn2b|ENSMUSG00000028243.5|UBX domain protein 2B
mm10_v2_chr2_-_129048172_129048172	0.282988	Sox2	ENSMUST00000145798.2|Gm14025|ENSMUSG00000079051.4|predicted gene 14025
mm10_v2_chr3_+_40745332_40745382	0.282368	Sox2	ENSMUST00000159819.1|Hspa4l|ENSMUSG00000025757.7|heat shock protein 4 like
mm10_v2_chr1_+_181150926_181150984	0.282357	Sox2	ENSMUST00000134115.1|Cnih4|ENSMUSG00000062169.7|cornichon homolog 4 (Drosophila) 	ENSMUST00000111059.1|Cnih4|ENSMUSG00000062169.7|cornichon homolog 4 (Drosophila)
mm10_v2_chr8_+_71464910_71465000	0.281228	Sox2	ENSMUST00000048914.6|Mrpl34|ENSMUSG00000034880.6|mitochondrial ribosomal protein L34
mm10_v2_chr2_-_140671462_140671476	0.27939	Sox2	ENSMUST00000110057.2|Flrt3|ENSMUSG00000051379.6|fibronectin leucine rich transmembrane protein 3
mm10_v2_chr11_+_94044194_94044238	0.279291	Sox2	ENSMUST00000092777.4|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9 	ENSMUST00000075695.6|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chrX_+_100730178_100730189	0.279013	Sox2	ENSMUST00000113744.1|Gdpd2|ENSMUSG00000019359.8|glycerophosphodiester phosphodiesterase domain containing 2
mm10_v2_chr11_+_62077018_62077101	0.279004	Sox2	ENSMUST00000092415.5|Specc1|ENSMUSG00000042331.7|sperm antigen with calponin homology and coiled-coil domains 1
mm10_v2_chr1_+_6487231_6487338	0.278658	Sox2	ENSMUST00000140079.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000131494.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr6_-_48048911_48048956	0.278122	Sox2	ENSMUST00000095944.3|Zfp777|ENSMUSG00000071477.4|zinc finger protein 777
mm10_v2_chr3_-_146651304_146651327	0.277046	Sox2	ENSMUST00000149825.1|4930503B20Rik|ENSMUSG00000090202.1|RIKEN cDNA 4930503B20 gene 	ENSMUST00000049703.5|4930503B20Rik|ENSMUSG00000090202.1|RIKEN cDNA 4930503B20 gene
mm10_v2_chr1_-_165934900_165935036	0.27601	Sox2	ENSMUST00000069609.5|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111427.2|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111426.4|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr10_+_67185730_67185768	0.2759	Sox2	ENSMUST00000173689.1|Jmjd1c|ENSMUSG00000037876.10|jumonji domain containing 1C
mm10_v2_chr9_+_35267857_35267894	0.274625	Sox2	ENSMUST00000034543.4|Rpusd4|ENSMUSG00000032044.4|RNA pseudouridylate synthase domain containing 4
mm10_v2_chr13_+_16014457_16014475	0.273276	Sox2	ENSMUST00000164993.1|Inhba|ENSMUSG00000041324.7|inhibin beta-A
mm10_v2_chr11_-_74590065_74590158	0.272344	Sox2	ENSMUST00000145524.1|Rap1gap2|ENSMUSG00000038807.11|RAP1 GTPase activating protein 2 	ENSMUST00000047488.7|Rap1gap2|ENSMUSG00000038807.11|RAP1 GTPase activating protein 2
mm10_v2_chr1_-_181183739_181183739	0.271919	Sox2	ENSMUST00000159290.1|Wdr26|ENSMUSG00000038733.7|WD repeat domain 26
mm10_v2_chr10_-_8518801_8518851	0.271895	Sox2	ENSMUST00000061601.7|Ust|ENSMUSG00000047712.7|uronyl-2-sulfotransferase
mm10_v2_chr7_+_28180272_28180316	0.271729	Sox2	ENSMUST00000173223.1|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm10_v2_chr12_+_29528382_29528468	0.271333	Sox2	ENSMUST00000049784.9|Myt1l|ENSMUSG00000061911.8|myelin transcription factor 1-like
mm10_v2_chr12_+_76370266_76370266	0.271226	Sox2	ENSMUST00000042779.3|Zbtb1|ENSMUSG00000033454.6|zinc finger and BTB domain containing 1
mm10_v2_chr12_-_84946921_84946923	0.269643	Sox2	ENSMUST00000169161.1|Arel1|ENSMUSG00000042350.7|apoptosis resistant E3 ubiquitin protein ligase 1
mm10_v2_chr14_-_62292959_62293019	0.269214	Sox2	ENSMUST00000063169.8|Dleu7|ENSMUSG00000048281.8|deleted in lymphocytic leukemia, 7
mm10_v2_chr8_-_84937347_84937367	0.268185	Sox2	ENSMUST00000109741.2|Mast1|ENSMUSG00000053693.10|microtubule associated serine/threonine kinase 1 	ENSMUST00000119820.1|Mast1|ENSMUSG00000053693.10|microtubule associated serine/threonine kinase 1
mm10_v2_chr7_-_83884289_83884341	0.267309	Sox2	ENSMUST00000094216.3|Mesdc1|ENSMUSG00000070462.3|mesoderm development candidate 1
mm10_v2_chr14_+_59201418_59201503	0.266959	Sox2	ENSMUST00000140136.2|Rcbtb1|ENSMUSG00000035469.11|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 	ENSMUST00000142326.1|Rcbtb1|ENSMUSG00000035469.11|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
mm10_v2_chr2_-_119787504_119787537	0.266537	Sox2	ENSMUST00000110793.1|Rpap1|ENSMUSG00000034032.9|RNA polymerase II associated protein 1 	ENSMUST00000099529.2|Rpap1|ENSMUSG00000034032.9|RNA polymerase II associated protein 1 	ENSMUST00000048493.5|Rpap1|ENSMUSG00000034032.9|RNA polymerase II associated protein 1
mm10_v2_chr16_+_17070281_17070320	0.266338	Sox2	ENSMUST00000090199.3|Ypel1|ENSMUSG00000022773.10|yippee-like 1 (Drosophila)
mm10_v2_chr17_-_23586214_23586269	0.266087	Sox2	ENSMUST00000115516.3|Zfp13|ENSMUSG00000062012.7|zinc finger protein 13
mm10_v2_chr2_-_20968526_20968625	0.265766	Sox2	ENSMUST00000141298.2|Arhgap21|ENSMUSG00000036591.9|Rho GTPase activating protein 21 	ENSMUST00000125783.2|Arhgap21|ENSMUSG00000036591.9|Rho GTPase activating protein 21
mm10_v2_chr13_-_99412816_99412864	0.265377	Sox2	ENSMUST00000180808.1|6430562O15Rik|ENSMUSG00000097828.1|RIKEN cDNA 6430562O15 gene
mm10_v2_chr5_+_30013141_30013161	0.264834	Sox2	ENSMUST00000026845.7|Il6|ENSMUSG00000025746.7|interleukin 6
mm10_v2_chr13_+_56703504_56703668	0.264629	Sox2	ENSMUST00000109874.1|Smad5|ENSMUSG00000021540.10|SMAD family member 5
mm10_v2_chr19_+_11518493_11518559	0.264482	Sox2	ENSMUST00000025580.3|Ms4a6b|ENSMUSG00000024677.7|membrane-spanning 4-domains, subfamily A, member 6B
mm10_v2_chr3_-_107931579_107931742	0.264368	Sox2	ENSMUST00000133947.2|Gstm7|ENSMUSG00000004035.6|glutathione S-transferase, mu 7 	ENSMUST00000124215.1|Gstm7|ENSMUSG00000004035.6|glutathione S-transferase, mu 7 	ENSMUST00000106688.1|Gstm7|ENSMUSG00000004035.6|glutathione S-transferase, mu 7 	ENSMUST00000106687.2|Gstm7|ENSMUSG00000004035.6|glutathione S-transferase, mu 7
mm10_v2_chr1_-_60566708_60566769	0.263161	Sox2	ENSMUST00000027168.5|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENSMUST00000090293.4|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENSMUST00000140485.1|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
mm10_v2_chr10_-_84533884_84533896	0.26285	Sox2	ENSMUST00000053871.3|Ckap4|ENSMUSG00000046841.4|cytoskeleton-associated protein 4
mm10_v2_chr12_+_110601439_110601452	0.262664	Sox2	ENSMUST00000018851.7|Dync1h1|ENSMUSG00000018707.7|dynein cytoplasmic 1 heavy chain 1
mm10_v2_chr17_-_25273562_25273638	0.262572	Sox2	ENSMUST00000173621.1|Ube2i|ENSMUSG00000015120.9|ubiquitin-conjugating enzyme E2I 	ENSMUST00000172520.1|Ube2i|ENSMUSG00000015120.9|ubiquitin-conjugating enzyme E2I
mm10_v2_chr16_+_18877037_18877241	0.262499	Sox2	ENSMUST00000120532.1|Hira|ENSMUSG00000022702.9|histone cell cycle regulation defective homolog A (S. cerevisiae) 	ENSMUST00000004222.7|Hira|ENSMUSG00000022702.9|histone cell cycle regulation defective homolog A (S. cerevisiae)
mm10_v2_chr8_+_86745679_86745699	0.262455	Sox2	ENSMUST00000098532.2|Gm10638|ENSMUSG00000074178.2|predicted gene 10638
mm10_v2_chr7_+_82867327_82867357	0.262047	Sox2	ENSMUST00000082237.5|Mex3b|ENSMUSG00000057706.6|mex3 homolog B (C. elegans)
mm10_v2_chr3_+_61364507_61364633	0.261067	Sox2	ENSMUST00000049064.2|Rap2b|ENSMUSG00000036894.2|RAP2B, member of RAS oncogene family
mm10_v2_chrX_+_38189780_38189826	0.260352	Sox2	ENSMUST00000049740.2|Zbtb33|ENSMUSG00000048047.3|zinc finger and BTB domain containing 33 	ENSMUST00000115142.2|Zbtb33|ENSMUSG00000048047.3|zinc finger and BTB domain containing 33
mm10_v2_chr1_-_153487639_153487662	0.259726	Sox2	ENSMUST00000042141.5|Dhx9|ENSMUSG00000042699.5|DEAH (Asp-Glu-Ala-His) box polypeptide 9
mm10_v2_chr7_-_105787567_105787654	0.259695	Sox2	ENSMUST00000144189.1|Dchs1|ENSMUSG00000036862.8|dachsous 1 (Drosophila)
mm10_v2_chr5_-_104982656_104982718	0.259205	Sox2	ENSMUST00000031239.6|Abcg3|ENSMUSG00000029299.8|ATP-binding cassette, sub-family G (WHITE), member 3
mm10_v2_chr11_+_94044241_94044273	0.25919	Sox2	ENSMUST00000103168.3|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr10_-_22731336_22731447	0.259133	Sox2	ENSMUST00000127698.1|Tbpl1|ENSMUSG00000071359.7|TATA box binding protein-like 1
mm10_v2_chr2_+_163438455_163438536	0.258955	Sox2	ENSMUST00000109420.3|Gdap1l1|ENSMUSG00000017943.9|ganglioside-induced differentiation-associated protein 1-like 1 	ENSMUST00000109421.3|Gdap1l1|ENSMUSG00000017943.9|ganglioside-induced differentiation-associated protein 1-like 1 	ENSMUST00000018087.6|Gdap1l1|ENSMUSG00000017943.9|ganglioside-induced differentiation-associated protein 1-like 1 	ENSMUST00000137070.1|Gdap1l1|ENSMUSG00000017943.9|ganglioside-induced differentiation-associated protein 1-like 1
mm10_v2_chr10_-_84533968_84534036	0.258723	Sox2	ENSMUST00000167671.1|Ckap4|ENSMUSG00000046841.4|cytoskeleton-associated protein 4
mm10_v2_chr1_+_82839449_82839518	0.257886	Sox2	ENSMUST00000113444.1|Agfg1|ENSMUSG00000026159.7|ArfGAP with FG repeats 1 	ENSMUST00000063380.4|Agfg1|ENSMUSG00000026159.7|ArfGAP with FG repeats 1
mm10_v2_chr10_-_82622926_82623137	0.257417	Sox2	ENSMUST00000176200.1|1190007I07Rik|ENSMUSG00000063320.5|RIKEN cDNA 1190007I07 gene 	ENSMUST00000183416.1|1190007I07Rik|ENSMUSG00000063320.5|RIKEN cDNA 1190007I07 gene
mm10_v2_chr6_-_86733218_86733256	0.257224	Sox2	ENSMUST00000113679.1|Gmcl1|ENSMUSG00000001157.7|germ cell-less homolog 1 (Drosophila)
mm10_v2_chr2_-_152951547_152951608	0.257115	Sox2	ENSMUST00000037715.6|Dusp15|ENSMUSG00000042662.10|dual specificity phosphatase-like 15
mm10_v2_chr3_+_154711125_154711133	0.256869	Sox2	ENSMUST00000051862.6|4922501L14Rik|ENSMUSG00000042943.8|RIKEN cDNA 4922501L14 gene
mm10_v2_chr5_-_62765618_62765656	0.256575	Sox2	ENSMUST00000159470.1|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr17_-_25273366_25273383	0.255078	Sox2	ENSMUST00000173084.1|Ube2i|ENSMUSG00000015120.9|ubiquitin-conjugating enzyme E2I
mm10_v2_chr1_+_135232045_135232110	0.251225	Sox2	ENSMUST00000110798.3|Gm4204|ENSMUSG00000079139.3|predicted gene 4204
mm10_v2_chr12_-_112673944_112674086	0.250979	Sox2	ENSMUST00000130342.1|Akt1|ENSMUSG00000001729.8|thymoma viral proto-oncogene 1
mm10_v2_chr2_-_6721606_6721629	0.250373	Sox2	ENSMUST00000150624.2|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000142941.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000100429.4|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000182879.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr5_+_147430153_147430217	0.250037	Sox2	ENSMUST00000031651.8|Pan3|ENSMUSG00000029647.9|PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae)
mm10_v2_chr9_-_110117379_110117445	0.249186	Sox2	ENSMUST00000111991.2|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000149199.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000035056.7|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000148287.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000127744.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm10_v2_chr4_-_82705735_82705754	0.248952	Sox2	ENSMUST00000155821.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr7_-_105787544_105787555	0.248271	Sox2	ENSMUST00000078482.5|Dchs1|ENSMUSG00000036862.8|dachsous 1 (Drosophila) 	ENSMUST00000154659.1|Dchs1|ENSMUSG00000036862.8|dachsous 1 (Drosophila)
mm10_v2_chrX_-_38576166_38576187	0.247959	Sox2	ENSMUST00000050083.5|Cul4b|ENSMUSG00000031095.9|cullin 4B
mm10_v2_chr9_+_57825918_57825945	0.247582	Sox2	ENSMUST00000165858.1|Gm17231|ENSMUSG00000091908.1|predicted gene 17231
mm10_v2_chr17_-_34121944_34121988	0.247349	Sox2	ENSMUST00000151986.1|Brd2|ENSMUSG00000024335.13|bromodomain containing 2
mm10_v2_chr5_-_147400352_147400489	0.247084	Sox2	ENSMUST00000049324.8|Flt3|ENSMUSG00000042817.11|FMS-like tyrosine kinase 3 	ENSMUST00000176456.1|Flt3|ENSMUSG00000042817.11|FMS-like tyrosine kinase 3 	ENSMUST00000110549.1|Flt3|ENSMUSG00000042817.11|FMS-like tyrosine kinase 3
mm10_v2_chr13_-_56895737_56895793	0.246982	Sox2	ENSMUST00000022023.6|Trpc7|ENSMUSG00000021541.7|transient receptor potential cation channel, subfamily C, member 7 	ENSMUST00000109871.1|Trpc7|ENSMUSG00000021541.7|transient receptor potential cation channel, subfamily C, member 7
mm10_v2_chr5_+_148265265_148265305	0.24694	Sox2	ENSMUST00000071878.5|Mtus2|ENSMUSG00000029651.10|microtubule associated tumor suppressor candidate 2
mm10_v2_chr7_+_126760591_126760599	0.245906	Sox2	ENSMUST00000091328.2|Mapk3|ENSMUSG00000063065.7|mitogen-activated protein kinase 3
mm10_v2_chr16_-_97763449_97763491	0.245645	Sox2	ENSMUST00000113743.1|Ripk4|ENSMUSG00000005251.8|receptor-interacting serine-threonine kinase 4
mm10_v2_chr1_-_30949756_30949770	0.244484	Sox2	ENSMUST00000076587.3|Ptp4a1|ENSMUSG00000026064.9|protein tyrosine phosphatase 4a1 	ENSMUST00000027232.7|Ptp4a1|ENSMUSG00000026064.9|protein tyrosine phosphatase 4a1
mm10_v2_chr10_+_42860543_42860627	0.244209	Sox2	ENSMUST00000157071.1|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr4_-_91376490_91376502	0.244049	Sox2	ENSMUST00000107124.3|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chr1_-_139377041_139377078	0.243111	Sox2	ENSMUST00000059825.5|Crb1|ENSMUSG00000063681.8|crumbs homolog 1 (Drosophila)
mm10_v2_chr15_-_96642883_96642984	0.24301	Sox2	ENSMUST00000088452.4|Slc38a1|ENSMUSG00000023169.8|solute carrier family 38, member 1
mm10_v2_chr3_-_158016419_158016453	0.242715	Sox2	ENSMUST00000127778.1|Srsf11|ENSMUSG00000055436.12|serine/arginine-rich splicing factor 11
mm10_v2_chrX_-_38576189_38576204	0.24173	Sox2	ENSMUST00000115118.1|Cul4b|ENSMUSG00000031095.9|cullin 4B
mm10_v2_chr3_-_127499095_127499137	0.241084	Sox2	ENSMUST00000182594.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr5_+_143548700_143548756	0.239514	Sox2	ENSMUST00000169329.1|Fam220a|ENSMUSG00000048910.9|family with sequence similarity 220, member A 	ENSMUST00000067145.5|Fam220a|ENSMUSG00000048910.9|family with sequence similarity 220, member A 	ENSMUST00000119488.1|Fam220a|ENSMUSG00000083012.2|family with sequence similarity 220, member A 	ENSMUST00000118121.1|Fam220a|ENSMUSG00000083012.2|family with sequence similarity 220, member A
mm10_v2_chr4_+_123016590_123016613	0.238914	Sox2	ENSMUST00000102649.3|Trit1|ENSMUSG00000028653.10|tRNA isopentenyltransferase 1
mm10_v2_chr5_-_123684289_123684379	0.238853	Sox2	ENSMUST00000111564.1|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1 	ENSMUST00000063905.5|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1
mm10_v2_chr5_-_8622855_8622952	0.238266	Sox2	ENSMUST00000047485.8|Rundc3b|ENSMUSG00000040570.8|RUN domain containing 3B 	ENSMUST00000115378.1|Rundc3b|ENSMUSG00000040570.8|RUN domain containing 3B
mm10_v2_chr11_-_46389471_46389505	0.238213	Sox2	ENSMUST00000109237.2|Itk|ENSMUSG00000020395.7|IL2 inducible T cell kinase
mm10_v2_chr1_+_87213909_87213918	0.23747	Sox2	ENSMUST00000113232.1|Eif4e2|ENSMUSG00000026254.11|eukaryotic translation initiation factor 4E member 2 	ENSMUST00000113233.1|Eif4e2|ENSMUSG00000026254.11|eukaryotic translation initiation factor 4E member 2 	ENSMUST00000050876.7|Eif4e2|ENSMUSG00000026254.11|eukaryotic translation initiation factor 4E member 2 	ENSMUST00000076362.5|Eif4e2|ENSMUSG00000026254.11|eukaryotic translation initiation factor 4E member 2 	ENSMUST00000113235.1|Eif4e2|ENSMUSG00000026254.11|eukaryotic translation initiation factor 4E member 2
mm10_v2_chr3_+_65528404_65528431	0.237299	Sox2	ENSMUST00000047906.3|Tiparp|ENSMUSG00000034640.3|TCDD-inducible poly(ADP-ribose) polymerase
mm10_v2_chr13_-_117025505_117025541	0.23681	Sox2	ENSMUST00000022239.6|Parp8|ENSMUSG00000021725.8|poly (ADP-ribose) polymerase family, member 8
mm10_v2_chr3_-_108210438_108210502	0.236801	Sox2	ENSMUST00000117784.1|Atxn7l2|ENSMUSG00000048997.11|ataxin 7-like 2 	ENSMUST00000119650.1|Atxn7l2|ENSMUSG00000048997.11|ataxin 7-like 2 	ENSMUST00000117409.1|Atxn7l2|ENSMUSG00000048997.11|ataxin 7-like 2
mm10_v2_chr3_+_90079540_90079715	0.236705	Sox2	ENSMUST00000029549.9|Tpm3|ENSMUSG00000027940.12|tropomyosin 3, gamma 	ENSMUST00000118566.1|Tpm3|ENSMUSG00000027940.12|tropomyosin 3, gamma 	ENSMUST00000119158.1|Tpm3|ENSMUSG00000027940.12|tropomyosin 3, gamma
mm10_v2_chr5_-_137858034_137858054	0.236441	Sox2	ENSMUST00000110978.2|Pilrb1|ENSMUSG00000066684.6|paired immunoglobin-like type 2 receptor beta 1
mm10_v2_chr18_+_20558092_20558201	0.236247	Sox2	ENSMUST00000120102.1|Dsg2|ENSMUSG00000044393.9|desmoglein 2
mm10_v2_chr15_-_44428303_44428337	0.236088	Sox2	ENSMUST00000038719.6|Nudcd1|ENSMUSG00000038736.9|NudC domain containing 1
mm10_v2_chr6_-_38875965_38875986	0.235085	Sox2	ENSMUST00000160360.1|Hipk2|ENSMUSG00000061436.9|homeodomain interacting protein kinase 2
mm10_v2_chr3_+_98382438_98382520	0.234376	Sox2	ENSMUST00000056096.8|Zfp697|ENSMUSG00000050064.8|zinc finger protein 697
mm10_v2_chr6_+_51470510_51470530	0.233966	Sox2	ENSMUST00000031862.7|Cbx3|ENSMUSG00000029836.9|chromobox 3
mm10_v2_chr16_-_23225334_23225368	0.233203	Sox2	ENSMUST00000055369.4|BC106179|ENSMUSG00000045231.4|cDNA sequence BC106179
mm10_v2_chr11_-_11890394_11890408	0.233181	Sox2	ENSMUST00000109659.2|Ddc|ENSMUSG00000020182.10|dopa decarboxylase
mm10_v2_chr13_-_98926374_98926389	0.232768	Sox2	ENSMUST00000109401.1|Tnpo1|ENSMUSG00000009470.10|transportin 1
mm10_v2_chr19_+_30030589_30030634	0.231139	Sox2	ENSMUST00000112552.1|Uhrf2|ENSMUSG00000024817.7|ubiquitin-like, containing PHD and RING finger domains 2
mm10_v2_chr5_+_105876532_105876585	0.231031	Sox2	ENSMUST00000150440.1|Zfp326|ENSMUSG00000029290.6|zinc finger protein 326 	ENSMUST00000031227.4|Zfp326|ENSMUSG00000029290.6|zinc finger protein 326
mm10_v2_chr3_-_50443603_50443615	0.230424	Sox2	ENSMUST00000029297.4|Slc7a11|ENSMUSG00000027737.5|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
mm10_v2_chr11_+_93886157_93886219	0.230103	Sox2	ENSMUST00000063718.4|Mbtd1|ENSMUSG00000059474.7|mbt domain containing 1 	ENSMUST00000107854.2|Mbtd1|ENSMUSG00000059474.7|mbt domain containing 1
mm10_v2_chr16_+_20097554_20097596	0.229451	Sox2	ENSMUST00000023509.3|Klhl24|ENSMUSG00000062901.2|kelch-like 24
mm10_v2_chr19_-_5729618_5729700	0.229097	Sox2	ENSMUST00000116558.2|Fam89b|ENSMUSG00000024939.6|family with sequence similarity 89, member B 	ENSMUST00000099955.3|Fam89b|ENSMUSG00000024939.6|family with sequence similarity 89, member B 	ENSMUST00000161368.1|Fam89b|ENSMUSG00000024939.6|family with sequence similarity 89, member B
mm10_v2_chr2_-_131160006_131160081	0.228836	Sox2	ENSMUST00000103188.3|1700037H04Rik|ENSMUSG00000027327.10|RIKEN cDNA 1700037H04 gene 	ENSMUST00000133602.1|1700037H04Rik|ENSMUSG00000027327.10|RIKEN cDNA 1700037H04 gene 	ENSMUST00000028800.5|1700037H04Rik|ENSMUSG00000027327.10|RIKEN cDNA 1700037H04 gene
mm10_v2_chr9_+_96259246_96259261	0.228467	Sox2	ENSMUST00000179065.1|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2 	ENSMUST00000165768.2|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2
mm10_v2_chrX_+_11308824_11308824	0.228167	Sox2	ENSMUST00000178595.1|Gm14476|ENSMUSG00000094904.1|predicted gene 14476
mm10_v2_chr7_-_127875633_127875673	0.227543	Sox2	ENSMUST00000106261.1|Zfp668|ENSMUSG00000049728.8|zinc finger protein 668 	ENSMUST00000144721.1|Zfp668|ENSMUSG00000049728.8|zinc finger protein 668
mm10_v2_chr17_-_32284088_32284123	0.227195	Sox2	ENSMUST00000119123.1|Brd4|ENSMUSG00000024002.10|bromodomain containing 4 	ENSMUST00000003726.8|Brd4|ENSMUSG00000024002.10|bromodomain containing 4 	ENSMUST00000121285.1|Brd4|ENSMUSG00000024002.10|bromodomain containing 4 	ENSMUST00000120276.1|Brd4|ENSMUSG00000024002.10|bromodomain containing 4 	ENSMUST00000114475.2|Brd4|ENSMUSG00000024002.10|bromodomain containing 4
mm10_v2_chr18_+_42511496_42511521	0.227	Sox2	ENSMUST00000025375.7|Tcerg1|ENSMUSG00000024498.9|transcription elongation regulator 1 (CA150)
mm10_v2_chrX_+_11324659_11324659	0.226869	Sox2	ENSMUST00000164729.2|Gm14475|ENSMUSG00000095445.1|predicted gene 14475
mm10_v2_chr4_+_154869585_154869636	0.226845	Sox2	ENSMUST00000079269.7|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1 	ENSMUST00000163732.1|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1 	ENSMUST00000080559.6|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1
mm10_v2_chr5_+_34336928_34336937	0.226561	Sox2	ENSMUST00000182047.1|Rnf4|ENSMUSG00000029110.7|ring finger protein 4
mm10_v2_chr13_-_75943812_75943950	0.225473	Sox2	ENSMUST00000022078.5|Rhobtb3|ENSMUSG00000021589.6|Rho-related BTB domain containing 3 	ENSMUST00000109606.1|Rhobtb3|ENSMUSG00000021589.6|Rho-related BTB domain containing 3
mm10_v2_chrX_+_101429555_101429708	0.224514	Sox2	ENSMUST00000033673.6|Nono|ENSMUSG00000031311.11|non-POU-domain-containing, octamer binding protein
mm10_v2_chr10_+_80755196_80755239	0.224508	Sox2	ENSMUST00000105336.2|Dot1l|ENSMUSG00000061589.8|DOT1-like, histone H3 methyltransferase (S. cerevisiae)
mm10_v2_chr11_-_46389509_46389525	0.224445	Sox2	ENSMUST00000020664.6|Itk|ENSMUSG00000020395.7|IL2 inducible T cell kinase
mm10_v2_chr15_-_50882806_50882822	0.221973	Sox2	ENSMUST00000184885.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr12_+_84996487_84996496	0.221967	Sox2	ENSMUST00000101202.3|Ylpm1|ENSMUSG00000021244.9|YLP motif containing 1
mm10_v2_chrX_+_140664565_140664601	0.22149	Sox2	ENSMUST00000128809.1|Mid2|ENSMUSG00000000266.5|midline 2
mm10_v2_chr17_-_35703971_35703994	0.221302	Sox2	ENSMUST00000148065.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr14_-_55722223_55722264	0.221187	Sox2	ENSMUST00000163889.1|Rabggta|ENSMUSG00000040472.8|Rab geranylgeranyl transferase, a subunit
mm10_v2_chr16_-_56024628_56024668	0.22058	Sox2	ENSMUST00000119981.1|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein 	ENSMUST00000096021.3|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein
mm10_v2_chr6_+_17463927_17464071	0.220271	Sox2	ENSMUST00000115442.1|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr17_+_45563928_45563973	0.220065	Sox2	ENSMUST00000041353.6|Slc35b2|ENSMUSG00000037089.9|solute carrier family 35, member B2
mm10_v2_chr11_-_106920359_106920643	0.2197	Sox2	ENSMUST00000167787.1|Smurf2|ENSMUSG00000018363.10|SMAD specific E3 ubiquitin protein ligase 2 	ENSMUST00000092517.2|Smurf2|ENSMUSG00000018363.10|SMAD specific E3 ubiquitin protein ligase 2
mm10_v2_chr1_-_65103363_65103378	0.219608	Sox2	ENSMUST00000061497.8|Cryga|ENSMUSG00000044429.8|crystallin, gamma A
mm10_v2_chr2_+_28513105_28513126	0.219382	Sox2	ENSMUST00000135803.1|Ralgds|ENSMUSG00000026821.9|ral guanine nucleotide dissociation stimulator
mm10_v2_chr6_+_83137089_83137121	0.219032	Sox2	ENSMUST00000121093.1|Rtkn|ENSMUSG00000034930.9|rhotekin 	ENSMUST00000087938.4|Rtkn|ENSMUSG00000034930.9|rhotekin
mm10_v2_chr11_-_19018714_19018828	0.218772	Sox2	ENSMUST00000177417.1|Meis1|ENSMUSG00000020160.12|Meis homeobox 1
mm10_v2_chr7_+_28179469_28179535	0.217881	Sox2	ENSMUST00000085901.6|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b 	ENSMUST00000172761.1|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm10_v2_chr8_+_33732049_33732137	0.217739	Sox2	ENSMUST00000167264.1|Gtf2e2|ENSMUSG00000031585.7|general transcription factor II E, polypeptide 2 (beta subunit)
mm10_v2_chr8_-_84687839_84687884	0.217492	Sox2	ENSMUST00000001975.4|Nacc1|ENSMUSG00000001910.4|nucleus accumbens associated 1, BEN and BTB (POZ) domain containing
mm10_v2_chr13_-_41220162_41220195	0.216735	Sox2	ENSMUST00000117096.1|Elovl2|ENSMUSG00000021364.9|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2
mm10_v2_chr4_+_43406435_43406615	0.216489	Sox2	ENSMUST00000098106.2|Rusc2|ENSMUSG00000035969.9|RUN and SH3 domain containing 2 	ENSMUST00000139198.1|Rusc2|ENSMUSG00000035969.9|RUN and SH3 domain containing 2
mm10_v2_chr11_+_20631956_20632006	0.216429	Sox2	ENSMUST00000109586.2|Sertad2|ENSMUSG00000049800.7|SERTA domain containing 2
mm10_v2_chr2_+_15055274_15055379	0.216022	Sox2	ENSMUST00000069870.3|Arl5b|ENSMUSG00000017418.7|ADP-ribosylation factor-like 5B
mm10_v2_chr5_-_107687990_107688025	0.215739	Sox2	ENSMUST00000180428.1|Gm26692|ENSMUSG00000097035.1|predicted gene, 26692
mm10_v2_chr8_+_105170668_105170686	0.215573	Sox2	ENSMUST00000109395.1|Cbfb|ENSMUSG00000031885.7|core binding factor beta 	ENSMUST00000109394.1|Cbfb|ENSMUSG00000031885.7|core binding factor beta 	ENSMUST00000052209.2|Cbfb|ENSMUSG00000031885.7|core binding factor beta 	ENSMUST00000109392.1|Cbfb|ENSMUSG00000031885.7|core binding factor beta
mm10_v2_chr9_-_79759849_79759856	0.215112	Sox2	ENSMUST00000034881.6|Cox7a2|ENSMUSG00000032330.6|cytochrome c oxidase subunit VIIa 2
mm10_v2_chr8_-_4216912_4217003	0.214411	Sox2	ENSMUST00000177491.1|BC068157|ENSMUSG00000064125.8|cDNA sequence BC068157
mm10_v2_chr9_-_121995962_121996041	0.214245	Sox2	ENSMUST00000084743.5|Pomgnt2|ENSMUSG00000066235.6|protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2
mm10_v2_chr3_-_127837419_127837505	0.213552	Sox2	ENSMUST00000051737.6|Ap1ar|ENSMUSG00000074238.2|adaptor-related protein complex 1 associated regulatory protein
mm10_v2_chr5_+_138085083_138085147	0.213229	Sox2	ENSMUST00000019660.4|Zkscan1|ENSMUSG00000029729.6|zinc finger with KRAB and SCAN domains 1 	ENSMUST00000066617.5|Zkscan1|ENSMUSG00000029729.6|zinc finger with KRAB and SCAN domains 1 	ENSMUST00000110963.1|Zkscan1|ENSMUSG00000029729.6|zinc finger with KRAB and SCAN domains 1
mm10_v2_chr19_+_22692613_22692630	0.213202	Sox2	ENSMUST00000099564.2|Trpm3|ENSMUSG00000052387.9|transient receptor potential cation channel, subfamily M, member 3 	ENSMUST00000099566.3|Trpm3|ENSMUSG00000052387.9|transient receptor potential cation channel, subfamily M, member 3
mm10_v2_chr12_-_40248073_40248086	0.21311	Sox2	ENSMUST00000169926.1|Ifrd1|ENSMUSG00000001627.5|interferon-related developmental regulator 1
mm10_v2_chr11_+_6389330_6389397	0.212485	Sox2	ENSMUST00000012612.4|Zmiz2|ENSMUSG00000041164.9|zinc finger, MIZ-type containing 2
mm10_v2_chr2_-_125859139_125859221	0.212122	Sox2	ENSMUST00000110463.1|Cops2|ENSMUSG00000027206.7|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana) 	ENSMUST00000028635.5|Cops2|ENSMUSG00000027206.7|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)
mm10_v2_chr1_+_175632169_175632185	0.211054	Sox2	ENSMUST00000097458.3|Kmo|ENSMUSG00000039783.9|kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)
mm10_v2_chr8_+_33732237_33732339	0.210747	Sox2	ENSMUST00000171010.1|Gtf2e2|ENSMUSG00000031585.7|general transcription factor II E, polypeptide 2 (beta subunit)
mm10_v2_chr19_+_8839298_8839346	0.210714	Sox2	ENSMUST00000160556.1|Bscl2|ENSMUSG00000071657.6|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)
mm10_v2_chr19_+_56874249_56874249	0.210672	Sox2	ENSMUST00000026068.7|Vwa2|ENSMUSG00000025082.8|von Willebrand factor A domain containing 2
mm10_v2_chr12_-_69357120_69357181	0.210294	Sox2	ENSMUST00000021368.8|Nemf|ENSMUSG00000020982.8|nuclear export mediator factor
mm10_v2_chr12_+_29938036_29938059	0.209819	Sox2	ENSMUST00000122328.1|Pxdn|ENSMUSG00000020674.10|peroxidasin homolog (Drosophila) 	ENSMUST00000118321.1|Pxdn|ENSMUSG00000020674.10|peroxidasin homolog (Drosophila)
mm10_v2_chr1_-_190169399_190169526	0.209058	Sox2	ENSMUST00000010319.7|Prox1|ENSMUSG00000010175.7|prospero-related homeobox 1
mm10_v2_chr10_+_39369750_39369804	0.207935	Sox2	ENSMUST00000063091.6|Fyn|ENSMUSG00000019843.8|Fyn proto-oncogene 	ENSMUST00000099967.3|Fyn|ENSMUSG00000019843.8|Fyn proto-oncogene 	ENSMUST00000126486.1|Fyn|ENSMUSG00000019843.8|Fyn proto-oncogene
mm10_v2_chr11_+_69846665_69846681	0.207256	Sox2	ENSMUST00000019605.2|Plscr3|ENSMUSG00000019461.6|phospholipid scramblase 3
mm10_v2_chrX_+_93654863_93654981	0.207176	Sox2	ENSMUST00000113933.2|Pcyt1b|ENSMUSG00000035246.10|phosphate cytidylyltransferase 1, choline, beta isoform
mm10_v2_chr19_-_45783512_45783558	0.20697	Sox2	ENSMUST00000026243.3|Mgea5|ENSMUSG00000025220.7|meningioma expressed antigen 5 (hyaluronidase)
mm10_v2_chr11_-_76468396_76468473	0.206785	Sox2	ENSMUST00000065028.7|Abr|ENSMUSG00000017631.12|active BCR-related gene
mm10_v2_chr3_+_14578609_14578687	0.206217	Sox2	ENSMUST00000029069.6|E2f5|ENSMUSG00000027552.8|E2F transcription factor 5 	ENSMUST00000165922.2|E2f5|ENSMUSG00000027552.8|E2F transcription factor 5
mm10_v2_chr11_-_74590186_74590215	0.206023	Sox2	ENSMUST00000102521.1|Rap1gap2|ENSMUSG00000038807.11|RAP1 GTPase activating protein 2
mm10_v2_chr7_-_102494773_102494773	0.205776	Sox2	ENSMUST00000058750.3|Olfr545|ENSMUSG00000044824.5|olfactory receptor 545
mm10_v2_chr5_-_149053038_149053053	0.205374	Sox2	ENSMUST00000085546.6|Hmgb1|ENSMUSG00000066551.6|high mobility group box 1
mm10_v2_chr8_+_33731867_33731946	0.205236	Sox2	ENSMUST00000170705.1|Gtf2e2|ENSMUSG00000031585.7|general transcription factor II E, polypeptide 2 (beta subunit)
mm10_v2_chr5_-_142550965_142551110	0.204005	Sox2	ENSMUST00000129212.1|Radil|ENSMUSG00000029576.11|Ras association and DIL domains 	ENSMUST00000110785.1|Radil|ENSMUSG00000029576.11|Ras association and DIL domains 	ENSMUST00000063635.8|Radil|ENSMUSG00000029576.11|Ras association and DIL domains
mm10_v2_chr19_+_12460749_12460783	0.203828	Sox2	ENSMUST00000081035.7|Mpeg1|ENSMUSG00000046805.9|macrophage expressed gene 1
mm10_v2_chr14_-_79771305_79771318	0.203773	Sox2	ENSMUST00000039568.5|Pcdh8|ENSMUSG00000036422.5|protocadherin 8
mm10_v2_chr16_-_85550417_85550432	0.203275	Sox2	ENSMUST00000175700.1|Cyyr1|ENSMUSG00000041134.9|cysteine and tyrosine-rich protein 1 	ENSMUST00000114174.2|Cyyr1|ENSMUSG00000041134.9|cysteine and tyrosine-rich protein 1
mm10_v2_chr17_+_26252915_26252983	0.203088	Sox2	ENSMUST00000114976.2|Luc7l|ENSMUSG00000024188.9|Luc7 homolog (S. cerevisiae)-like 	ENSMUST00000140427.1|Luc7l|ENSMUSG00000024188.9|Luc7 homolog (S. cerevisiae)-like 	ENSMUST00000119928.1|Luc7l|ENSMUSG00000024188.9|Luc7 homolog (S. cerevisiae)-like
mm10_v2_chr18_-_61536522_61536558	0.203083	Sox2	ENSMUST00000171629.1|Arhgef37|ENSMUSG00000045094.7|Rho guanine nucleotide exchange factor (GEF) 37
mm10_v2_chr11_-_113710017_113710061	0.202692	Sox2	ENSMUST00000018871.1|Cpsf4l|ENSMUSG00000018727.13|cleavage and polyadenylation specific factor 4-like
mm10_v2_chr14_+_49172202_49172254	0.202147	Sox2	ENSMUST00000153488.1|Naa30|ENSMUSG00000036282.8|N(alpha)-acetyltransferase 30, NatC catalytic subunit
mm10_v2_chr11_+_94044331_94044365	0.201869	Sox2	ENSMUST00000024979.8|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr17_-_80207299_80207308	0.201523	Sox2	ENSMUST00000063417.9|Srsf7|ENSMUSG00000024097.10|serine/arginine-rich splicing factor 7
mm10_v2_chr11_-_58938851_58938923	0.200702	Sox2	ENSMUST00000094151.5|Rnf187|ENSMUSG00000020496.8|ring finger protein 187
mm10_v2_chr2_+_68117713_68117713	0.200503	Sox2	ENSMUST00000112346.2|B3galt1|ENSMUSG00000034780.5|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
mm10_v2_chr16_+_4835406_4835422	0.20028	Sox2	ENSMUST00000100211.3|4930562C15Rik|ENSMUSG00000022518.9|RIKEN cDNA 4930562C15 gene
mm10_v2_chr10_-_60219260_60219295	0.200158	Sox2	ENSMUST00000135158.2|Chst3|ENSMUSG00000057337.7|carbohydrate (chondroitin 6/keratan) sulfotransferase 3
mm10_v2_chr5_-_149051604_149051624	0.199887	Sox2	ENSMUST00000093196.4|Hmgb1|ENSMUSG00000066551.6|high mobility group box 1
mm10_v2_chr12_-_16800674_16800705	0.199147	Sox2	ENSMUST00000162112.1|Greb1|ENSMUSG00000036523.10|gene regulated by estrogen in breast cancer protein
mm10_v2_chr10_-_95501921_95501953	0.198851	Sox2	ENSMUST00000075829.2|Mrpl42|ENSMUSG00000062981.4|mitochondrial ribosomal protein L42
mm10_v2_chr14_-_33447142_33447179	0.198295	Sox2	ENSMUST00000111944.3|Mapk8|ENSMUSG00000021936.7|mitogen-activated protein kinase 8 	ENSMUST00000022504.5|Mapk8|ENSMUSG00000021936.7|mitogen-activated protein kinase 8 	ENSMUST00000111945.2|Mapk8|ENSMUSG00000021936.7|mitogen-activated protein kinase 8
mm10_v2_chr2_-_180042401_180042438	0.19828	Sox2	ENSMUST00000029082.8|Psma7|ENSMUSG00000027566.8|proteasome (prosome, macropain) subunit, alpha type 7
mm10_v2_chr4_+_107802277_107802413	0.198277	Sox2	ENSMUST00000106733.2|Lrp8|ENSMUSG00000028613.8|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 	ENSMUST00000030356.3|Lrp8|ENSMUSG00000028613.8|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 	ENSMUST00000106732.2|Lrp8|ENSMUSG00000028613.8|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 	ENSMUST00000126573.1|Lrp8|ENSMUSG00000028613.8|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
mm10_v2_chr18_+_36939178_36939318	0.198061	Sox2	ENSMUST00000115662.2|Pcdha2|ENSMUSG00000007440.8|protocadherin alpha 2
mm10_v2_chrX_-_12128350_12128367	0.197929	Sox2	ENSMUST00000123004.1|Bcor|ENSMUSG00000040363.8|BCL6 interacting corepressor
mm10_v2_chr15_-_76374926_76374942	0.19787	Sox2	ENSMUST00000071119.6|Tssk5|ENSMUSG00000060794.6|testis-specific serine kinase 5
mm10_v2_chr8_+_46490968_46490995	0.197808	Sox2	ENSMUST00000110372.1|Acsl1|ENSMUSG00000018796.6|acyl-CoA synthetase long-chain family member 1 	ENSMUST00000130563.1|Acsl1|ENSMUSG00000018796.6|acyl-CoA synthetase long-chain family member 1
mm10_v2_chr7_-_115846080_115846112	0.197328	Sox2	ENSMUST00000166207.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr13_+_83573577_83573607	0.19705	Sox2	ENSMUST00000185052.1|Mef2c|ENSMUSG00000005583.10|myocyte enhancer factor 2C
mm10_v2_chr14_+_58076507_58076507	0.196722	Sox2	ENSMUST00000166770.1|Fgf9|ENSMUSG00000021974.8|fibroblast growth factor 9
mm10_v2_chr17_-_25273534_25273557	0.196592	Sox2	ENSMUST00000174031.1|Ube2i|ENSMUSG00000015120.9|ubiquitin-conjugating enzyme E2I
mm10_v2_chr4_-_132212255_132212303	0.196309	Sox2	ENSMUST00000152796.1|Ythdf2|ENSMUSG00000040025.11|YTH domain family 2
mm10_v2_chr4_-_149676043_149676065	0.195485	Sox2	ENSMUST00000118704.1|Pik3cd|ENSMUSG00000039936.12|phosphatidylinositol 3-kinase catalytic delta polypeptide
mm10_v2_chr1_+_86526688_86526736	0.195216	Sox2	ENSMUST00000045897.8|Ptma|ENSMUSG00000026238.8|prothymosin alpha
mm10_v2_chr13_+_91741507_91741531	0.194298	Sox2	ENSMUST00000022120.4|Acot12|ENSMUSG00000021620.4|acyl-CoA thioesterase 12
mm10_v2_chr10_-_39986625_39986648	0.193691	Sox2	ENSMUST00000170579.1|BC021785|ENSMUSG00000038528.8|cDNA sequence BC021785 	ENSMUST00000045524.6|BC021785|ENSMUSG00000038528.8|cDNA sequence BC021785 	ENSMUST00000073618.5|BC021785|ENSMUSG00000038528.8|cDNA sequence BC021785 	ENSMUST00000164566.1|BC021785|ENSMUSG00000038528.8|cDNA sequence BC021785
mm10_v2_chr2_+_32629467_32629514	0.193677	Sox2	ENSMUST00000068271.4|Ak1|ENSMUSG00000026817.8|adenylate kinase 1
mm10_v2_chr1_+_136131382_136131404	0.193656	Sox2	ENSMUST00000075164.4|Kif21b|ENSMUSG00000041642.12|kinesin family member 21B
mm10_v2_chr19_+_6364557_6364668	0.193361	Sox2	ENSMUST00000155973.1|Sf1|ENSMUSG00000024949.11|splicing factor 1
mm10_v2_chr13_+_55635002_55635036	0.192912	Sox2	ENSMUST00000172272.1|Ddx46|ENSMUSG00000021500.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 	ENSMUST00000099479.3|Ddx46|ENSMUSG00000021500.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
mm10_v2_chr6_+_51432678_51432784	0.192674	Sox2	ENSMUST00000160133.1|Nfe2l3|ENSMUSG00000029832.10|nuclear factor, erythroid derived 2, like 3
mm10_v2_chr11_+_6389442_6389471	0.192666	Sox2	ENSMUST00000109786.1|Zmiz2|ENSMUSG00000041164.9|zinc finger, MIZ-type containing 2
mm10_v2_chr1_-_190170178_190170237	0.192415	Sox2	ENSMUST00000177288.1|Prox1|ENSMUSG00000010175.7|prospero-related homeobox 1
mm10_v2_chr2_-_6884975_6884996	0.192259	Sox2	ENSMUST00000114924.3|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000170438.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000114934.4|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr2_+_32625431_32625442	0.190849	Sox2	ENSMUST00000113277.1|Ak1|ENSMUSG00000026817.8|adenylate kinase 1
mm10_v2_chr3_-_127225917_127225959	0.190845	Sox2	ENSMUST00000182064.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain 	ENSMUST00000182662.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr6_+_125096145_125096162	0.190128	Sox2	ENSMUST00000112390.1|Chd4|ENSMUSG00000063870.6|chromodomain helicase DNA binding protein 4
mm10_v2_chr1_-_33814516_33814576	0.190061	Sox2	ENSMUST00000044455.5|Zfp451|ENSMUSG00000042197.7|zinc finger protein 451 	ENSMUST00000115167.1|Zfp451|ENSMUSG00000042197.7|zinc finger protein 451
mm10_v2_chr9_+_35669624_35669678	0.19003	Sox2	ENSMUST00000118254.1|Pate2|ENSMUSG00000074452.6|prostate and testis expressed 2
mm10_v2_chr12_+_3365108_3365142	0.189192	Sox2	ENSMUST00000020999.5|Kif3c|ENSMUSG00000020668.9|kinesin family member 3C
mm10_v2_chr15_+_41830921_41831001	0.188922	Sox2	ENSMUST00000166917.1|Oxr1|ENSMUSG00000022307.9|oxidation resistance 1
mm10_v2_chr13_+_65278810_65278838	0.18878	Sox2	ENSMUST00000126879.1|Zfp369|ENSMUSG00000021514.11|zinc finger protein 369 	ENSMUST00000130799.1|Zfp369|ENSMUSG00000021514.11|zinc finger protein 369
mm10_v2_chr14_-_52197216_52197267	0.188558	Sox2	ENSMUST00000046709.7|Supt16|ENSMUSG00000035726.7|suppressor of Ty 16
mm10_v2_chr2_+_160645881_160645896	0.188463	Sox2	ENSMUST00000109468.2|Top1|ENSMUSG00000070544.6|topoisomerase (DNA) I
mm10_v2_chr6_+_29735667_29735694	0.187498	Sox2	ENSMUST00000001812.4|Smo|ENSMUSG00000001761.6|smoothened homolog (Drosophila)
mm10_v2_chr5_-_137871739_137871768	0.18695	Sox2	ENSMUST00000164886.1|Pilrb2|ENSMUSG00000066682.7|paired immunoglobin-like type 2 receptor beta 2
mm10_v2_chr16_-_5132458_5132483	0.186632	Sox2	ENSMUST00000035672.3|Ppl|ENSMUSG00000039457.3|periplakin
mm10_v2_chr11_+_80383397_80383415	0.186018	Sox2	ENSMUST00000053740.8|Zfp207|ENSMUSG00000017421.12|zinc finger protein 207
mm10_v2_chr12_+_32820304_32820362	0.185839	Sox2	ENSMUST00000020886.7|Nampt|ENSMUSG00000020572.7|nicotinamide phosphoribosyltransferase
mm10_v2_chr11_+_64979025_64979110	0.185546	Sox2	ENSMUST00000071891.5|Elac2|ENSMUSG00000020549.8|elaC homolog 2 (E. coli) 	ENSMUST00000108697.1|Elac2|ENSMUSG00000020549.8|elaC homolog 2 (E. coli) 	ENSMUST00000101049.2|Elac2|ENSMUSG00000020549.8|elaC homolog 2 (E. coli)
mm10_v2_chr19_-_28680077_28680122	0.185467	Sox2	ENSMUST00000162022.1|Glis3|ENSMUSG00000052942.7|GLIS family zinc finger 3 	ENSMUST00000112612.2|Glis3|ENSMUSG00000052942.7|GLIS family zinc finger 3
mm10_v2_chr18_+_3382979_3383065	0.18251	Sox2	ENSMUST00000025073.5|Cul2|ENSMUSG00000024231.8|cullin 2
mm10_v2_chr2_-_121109795_121109795	0.182472	Sox2	ENSMUST00000110675.1|Tgm7|ENSMUSG00000079103.2|transglutaminase 7
mm10_v2_chr5_+_3928267_3928300	0.182468	Sox2	ENSMUST00000044492.8|Akap9|ENSMUSG00000040407.11|A kinase (PRKA) anchor protein (yotiao) 9
mm10_v2_chr6_-_49264014_49264060	0.182064	Sox2	ENSMUST00000031841.7|Tra2a|ENSMUSG00000029817.9|transformer 2 alpha homolog (Drosophila)
mm10_v2_chr5_+_33820695_33820835	0.180702	Sox2	ENSMUST00000075812.4|Whsc1|ENSMUSG00000057406.10|Wolf-Hirschhorn syndrome candidate 1 (human) 	ENSMUST00000114397.2|Whsc1|ENSMUSG00000057406.10|Wolf-Hirschhorn syndrome candidate 1 (human) 	ENSMUST00000155880.1|Whsc1|ENSMUSG00000057406.10|Wolf-Hirschhorn syndrome candidate 1 (human)
mm10_v2_chr2_+_18672384_18672482	0.18056	Sox2	ENSMUST00000171845.1|Commd3|ENSMUSG00000051154.5|COMM domain containing 3 	ENSMUST00000061158.4|Commd3|ENSMUSG00000051154.5|COMM domain containing 3
mm10_v2_chr18_-_23981555_23981555	0.180183	Sox2	ENSMUST00000115829.1|Zscan30|ENSMUSG00000024274.8|zinc finger and SCAN domain containing 30
mm10_v2_chr7_+_24507122_24507139	0.17981	Sox2	ENSMUST00000177205.1|Zfp428|ENSMUSG00000064264.8|zinc finger protein 428
mm10_v2_chr10_-_37138863_37138937	0.179453	Sox2	ENSMUST00000092584.5|Marcks|ENSMUSG00000069662.5|myristoylated alanine rich protein kinase C substrate
mm10_v2_chr7_-_133122615_133122762	0.179281	Sox2	ENSMUST00000167218.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr2_-_156111863_156111943	0.178712	Sox2	ENSMUST00000154889.1|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000079312.3|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000153634.1|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000133921.1|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000131377.1|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12 	ENSMUST00000183518.1|RP23-220D12.12|ENSMUSG00000098950.1|RNA-binding protein 12  	ENSMUST00000184265.1|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000109607.3|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000109608.2|Cpne1|ENSMUSG00000074643.6|copine I
mm10_v2_chr11_-_46312220_46312358	0.177978	Sox2	ENSMUST00000129474.1|Cyfip2|ENSMUSG00000020340.10|cytoplasmic FMR1 interacting protein 2 	ENSMUST00000093166.4|Cyfip2|ENSMUSG00000020340.10|cytoplasmic FMR1 interacting protein 2 	ENSMUST00000165599.2|Cyfip2|ENSMUSG00000020340.10|cytoplasmic FMR1 interacting protein 2
mm10_v2_chr11_+_69580359_69580382	0.177756	Sox2	ENSMUST00000005371.5|Trp53|ENSMUSG00000059552.7|transformation related protein 53 	ENSMUST00000108658.3|Trp53|ENSMUSG00000059552.7|transformation related protein 53 	ENSMUST00000171247.1|Trp53|ENSMUSG00000059552.7|transformation related protein 53
mm10_v2_chr14_-_55722176_55722211	0.177161	Sox2	ENSMUST00000169237.1|Rabggta|ENSMUSG00000040472.8|Rab geranylgeranyl transferase, a subunit 	ENSMUST00000062861.7|Rabggta|ENSMUSG00000040472.8|Rab geranylgeranyl transferase, a subunit
mm10_v2_chr18_+_34777008_34777075	0.17706	Sox2	ENSMUST00000043775.7|Kdm3b|ENSMUSG00000038773.10|KDM3B lysine (K)-specific demethylase 3B
mm10_v2_chr2_-_126675538_126675592	0.176723	Sox2	ENSMUST00000103227.1|Gabpb1|ENSMUSG00000027361.9|GA repeat binding protein, beta 1 	ENSMUST00000110425.2|Gabpb1|ENSMUSG00000027361.9|GA repeat binding protein, beta 1 	ENSMUST00000089745.4|Gabpb1|ENSMUSG00000027361.9|GA repeat binding protein, beta 1
mm10_v2_chr3_+_88142536_88142572	0.176665	Sox2	ENSMUST00000107558.2|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D 	ENSMUST00000107559.2|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D
mm10_v2_chr3_-_95315086_95315117	0.176411	Sox2	ENSMUST00000098867.3|Gm10691|ENSMUSG00000074414.3|predicted gene 10691
mm10_v2_chr4_+_86930691_86930713	0.176321	Sox2	ENSMUST00000164590.1|Acer2|ENSMUSG00000091609.1|alkaline ceramidase 2
mm10_v2_chr5_-_139484420_139484473	0.176249	Sox2	ENSMUST00000150992.1|Zfand2a|ENSMUSG00000053581.7|zinc finger, AN1-type domain 2A
mm10_v2_chr17_-_35697971_35698001	0.176071	Sox2	ENSMUST00000146472.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr6_+_92092369_92092433	0.174367	Sox2	ENSMUST00000113463.1|Nr2c2|ENSMUSG00000005893.8|nuclear receptor subfamily 2, group C, member 2
mm10_v2_chr15_+_6386598_6386785	0.174274	Sox2	ENSMUST00000080880.5|Dab2|ENSMUSG00000022150.10|disabled 2, mitogen-responsive phosphoprotein 	ENSMUST00000110664.2|Dab2|ENSMUSG00000022150.10|disabled 2, mitogen-responsive phosphoprotein 	ENSMUST00000110663.2|Dab2|ENSMUSG00000022150.10|disabled 2, mitogen-responsive phosphoprotein 	ENSMUST00000161812.1|Dab2|ENSMUSG00000022150.10|disabled 2, mitogen-responsive phosphoprotein 	ENSMUST00000160134.1|Dab2|ENSMUSG00000022150.10|disabled 2, mitogen-responsive phosphoprotein
mm10_v2_chr9_+_58014990_58015013	0.173737	Sox2	ENSMUST00000034874.7|Cyp11a1|ENSMUSG00000032323.7|cytochrome P450, family 11, subfamily a, polypeptide 1
mm10_v2_chr10_-_69212996_69213098	0.173503	Sox2	ENSMUST00000170048.1|A930033H14Rik|ENSMUSG00000090622.1|RIKEN cDNA A930033H14 gene
mm10_v2_chr11_-_69549108_69549108	0.172869	Sox2	ENSMUST00000108659.1|Dnah2|ENSMUSG00000005237.7|dynein, axonemal, heavy chain 2
mm10_v2_chr17_+_29032664_29032681	0.172718	Sox2	ENSMUST00000130216.1|Srsf3|ENSMUSG00000071172.6|serine/arginine-rich splicing factor 3
mm10_v2_chr9_+_106821874_106821994	0.172513	Sox2	ENSMUST00000159645.1|Vprbp|ENSMUSG00000040325.10|Vpr (HIV-1) binding protein
mm10_v2_chr7_+_126272589_126272619	0.170388	Sox2	ENSMUST00000056028.9|Sbk1|ENSMUSG00000042978.9|SH3-binding kinase 1
mm10_v2_chr9_+_108508005_108508076	0.169667	Sox2	ENSMUST00000006838.8|Qars|ENSMUSG00000032604.8|glutaminyl-tRNA synthetase 	ENSMUST00000134939.1|Qars|ENSMUSG00000032604.8|glutaminyl-tRNA synthetase
mm10_v2_chr16_-_97763712_97763780	0.169608	Sox2	ENSMUST00000019386.8|Ripk4|ENSMUSG00000005251.8|receptor-interacting serine-threonine kinase 4
mm10_v2_chr9_+_78615501_78615546	0.169198	Sox2	ENSMUST00000093812.4|Cd109|ENSMUSG00000046186.8|CD109 antigen
mm10_v2_chr2_+_158666690_158666740	0.169074	Sox2	ENSMUST00000103116.3|Ppp1r16b|ENSMUSG00000037754.7|protein phosphatase 1, regulatory (inhibitor) subunit 16B
mm10_v2_chr4_+_45203921_45203931	0.168944	Sox2	ENSMUST00000107804.1|Frmpd1|ENSMUSG00000035615.6|FERM and PDZ domain containing 1
mm10_v2_chr1_+_66364623_66364663	0.168756	Sox2	ENSMUST00000077355.5|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2 	ENSMUST00000114012.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr17_-_34615965_34615978	0.167558	Sox2	ENSMUST00000097345.3|Egfl8|ENSMUSG00000015467.8|EGF-like domain 8 	ENSMUST00000015611.7|Egfl8|ENSMUSG00000015467.8|EGF-like domain 8
mm10_v2_chr11_+_80383309_80383336	0.167537	Sox2	ENSMUST00000108216.1|Zfp207|ENSMUSG00000017421.12|zinc finger protein 207
mm10_v2_chr13_-_54687644_54687688	0.166487	Sox2	ENSMUST00000129881.1|Rnf44|ENSMUSG00000034928.10|ring finger protein 44
mm10_v2_chr4_+_48049080_48049114	0.166111	Sox2	ENSMUST00000153369.1|Nr4a3|ENSMUSG00000028341.3|nuclear receptor subfamily 4, group A, member 3
mm10_v2_chr7_+_112679314_112679325	0.165973	Sox2	ENSMUST00000084705.5|Tead1|ENSMUSG00000055320.10|TEA domain family member 1 	ENSMUST00000059768.10|Tead1|ENSMUSG00000055320.10|TEA domain family member 1
mm10_v2_chr18_+_20558221_20558246	0.16588	Sox2	ENSMUST00000121837.1|Dsg2|ENSMUSG00000044393.9|desmoglein 2
mm10_v2_chr2_+_30441831_30441853	0.165607	Sox2	ENSMUST00000131476.1|Ppp2r4|ENSMUSG00000039515.5|protein phosphatase 2A, regulatory subunit B (PR 53)
mm10_v2_chr19_-_7241216_7241226	0.165459	Sox2	ENSMUST00000025675.9|Naa40|ENSMUSG00000024764.9|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)
mm10_v2_chr5_-_65697856_65697963	0.165409	Sox2	ENSMUST00000031104.6|Pds5a|ENSMUSG00000029202.9|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)
mm10_v2_chr11_-_61175020_61175060	0.165395	Sox2	ENSMUST00000041683.8|Usp22|ENSMUSG00000042506.9|ubiquitin specific peptidase 22
mm10_v2_chr11_+_102393403_102393496	0.16532	Sox2	ENSMUST00000107105.2|Rundc3a|ENSMUSG00000006575.8|RUN domain containing 3A 	ENSMUST00000107102.1|Rundc3a|ENSMUSG00000006575.8|RUN domain containing 3A 	ENSMUST00000107103.1|Rundc3a|ENSMUSG00000006575.8|RUN domain containing 3A 	ENSMUST00000006750.7|Rundc3a|ENSMUSG00000006575.8|RUN domain containing 3A
mm10_v2_chrX_-_143933204_143933311	0.164652	Sox2	ENSMUST00000112851.1|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000112856.2|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000033642.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr19_+_5740885_5740904	0.162966	Sox2	ENSMUST00000081496.5|Ltbp3|ENSMUSG00000024940.10|latent transforming growth factor beta binding protein 3
mm10_v2_chr4_+_116221633_116221661	0.162795	Sox2	ENSMUST00000030464.7|Pik3r3|ENSMUSG00000028698.7|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)
mm10_v2_chr3_-_89338005_89338066	0.162563	Sox2	ENSMUST00000029674.7|Efna4|ENSMUSG00000028040.7|ephrin A4
mm10_v2_chr11_+_101316200_101316275	0.162478	Sox2	ENSMUST00000142640.1|Psme3|ENSMUSG00000078652.3|proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki) 	ENSMUST00000019470.7|Psme3|ENSMUSG00000078652.3|proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)
mm10_v2_chr1_+_165769392_165769476	0.162061	Sox2	ENSMUST00000040298.4|Creg1|ENSMUSG00000040713.6|cellular repressor of E1A-stimulated genes 1
mm10_v2_chr2_-_79456750_79456761	0.162059	Sox2	ENSMUST00000041099.4|Neurod1|ENSMUSG00000034701.9|neurogenic differentiation 1
mm10_v2_chr4_-_11254248_11254266	0.161947	Sox2	ENSMUST00000044616.3|Ints8|ENSMUSG00000040738.4|integrator complex subunit 8 	ENSMUST00000108319.2|Ints8|ENSMUSG00000040738.4|integrator complex subunit 8 	ENSMUST00000108318.2|Ints8|ENSMUSG00000040738.4|integrator complex subunit 8
mm10_v2_chr16_-_76373827_76373852	0.161318	Sox2	ENSMUST00000121927.1|Nrip1|ENSMUSG00000048490.7|nuclear receptor interacting protein 1
mm10_v2_chr3_-_146781351_146781431	0.159327	Sox2	ENSMUST00000005164.7|Prkacb|ENSMUSG00000005034.9|protein kinase, cAMP dependent, catalytic, beta
mm10_v2_chr9_-_112187898_112187938	0.159212	Sox2	ENSMUST00000178410.1|Arpp21|ENSMUSG00000032503.11|cyclic AMP-regulated phosphoprotein, 21 	ENSMUST00000172380.3|Arpp21|ENSMUSG00000032503.11|cyclic AMP-regulated phosphoprotein, 21
mm10_v2_chr16_+_31663841_31663912	0.158798	Sox2	ENSMUST00000115201.1|Dlg1|ENSMUSG00000022770.10|discs, large homolog 1 (Drosophila)
mm10_v2_chr6_-_52218686_52218716	0.158511	Sox2	ENSMUST00000134367.2|Hoxa7|ENSMUSG00000038236.6|homeobox A7
mm10_v2_chr5_+_65131184_65131231	0.157349	Sox2	ENSMUST00000031089.5|Klhl5|ENSMUSG00000054920.6|kelch-like 5 	ENSMUST00000101191.3|Klhl5|ENSMUSG00000054920.6|kelch-like 5
mm10_v2_chr1_-_85961029_85961073	0.155269	Sox2	ENSMUST00000086975.4|Gpr55|ENSMUSG00000049608.7|G protein-coupled receptor 55
mm10_v2_chr4_-_109156610_109156631	0.154924	Sox2	ENSMUST00000161363.1|Osbpl9|ENSMUSG00000028559.11|oxysterol binding protein-like 9
mm10_v2_chr12_+_24974914_24974948	0.1547	Sox2	ENSMUST00000066652.5|Kidins220|ENSMUSG00000036333.10|kinase D-interacting substrate 220
mm10_v2_chr12_-_80643799_80643857	0.15404	Sox2	ENSMUST00000166931.1|Erh|ENSMUSG00000021131.7|enhancer of rudimentary homolog (Drosophila)
mm10_v2_chr5_+_147957310_147957357	0.153977	Sox2	ENSMUST00000085558.4|Mtus2|ENSMUSG00000029651.10|microtubule associated tumor suppressor candidate 2 	ENSMUST00000129092.1|Mtus2|ENSMUSG00000029651.10|microtubule associated tumor suppressor candidate 2
mm10_v2_chr4_+_138217235_138217310	0.153812	Sox2	ENSMUST00000130071.1|Hp1bp3|ENSMUSG00000028759.7|heterochromatin protein 1, binding protein 3
mm10_v2_chr10_+_69706326_69706382	0.153773	Sox2	ENSMUST00000182992.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr7_+_5057161_5057197	0.153491	Sox2	ENSMUST00000045543.5|Ccdc106|ENSMUSG00000035228.8|coiled-coil domain containing 106
mm10_v2_chr6_-_119963733_119963836	0.15309	Sox2	ENSMUST00000161512.2|Wnk1|ENSMUSG00000045962.10|WNK lysine deficient protein kinase 1
mm10_v2_chr2_+_92184106_92184310	0.152868	Sox2	ENSMUST00000111294.1|Phf21a|ENSMUSG00000058318.9|PHD finger protein 21A 	ENSMUST00000111293.2|Phf21a|ENSMUSG00000058318.9|PHD finger protein 21A 	ENSMUST00000162146.1|Phf21a|ENSMUSG00000058318.9|PHD finger protein 21A 	ENSMUST00000111292.1|Phf21a|ENSMUSG00000058318.9|PHD finger protein 21A 	ENSMUST00000162497.1|Phf21a|ENSMUSG00000058318.9|PHD finger protein 21A
mm10_v2_chr10_+_57650990_57651010	0.152551	Sox2	ENSMUST00000175852.1|Pkib|ENSMUSG00000019876.9|protein kinase inhibitor beta, cAMP dependent, testis specific
mm10_v2_chr2_+_176831140_176831140	0.152361	Sox2	ENSMUST00000122218.2|Gm14408|ENSMUSG00000078876.4|predicted gene 14408 	ENSMUST00000126726.1|Gm14408|ENSMUSG00000078876.4|predicted gene 14408
mm10_v2_chr2_-_140671400_140671427	0.152177	Sox2	ENSMUST00000056760.3|Flrt3|ENSMUSG00000051379.6|fibronectin leucine rich transmembrane protein 3
mm10_v2_chr11_-_87074055_87074071	0.151907	Sox2	ENSMUST00000020804.7|Gdpd1|ENSMUSG00000061666.6|glycerophosphodiester phosphodiesterase domain containing 1
mm10_v2_chr17_+_80944611_80944644	0.151289	Sox2	ENSMUST00000025092.4|Tmem178|ENSMUSG00000024245.4|transmembrane protein 178
mm10_v2_chr14_+_52197502_52197518	0.150501	Sox2	ENSMUST00000180857.1|Gm26590|ENSMUSG00000097533.1|predicted gene, 26590
mm10_v2_chr11_+_69580392_69580419	0.150359	Sox2	ENSMUST00000108657.3|Trp53|ENSMUSG00000059552.7|transformation related protein 53
mm10_v2_chr11_-_115062177_115062177	0.150201	Sox2	ENSMUST00000062787.7|Cd300e|ENSMUSG00000048498.7|CD300e antigen
mm10_v2_chr7_+_66109474_66109515	0.15008	Sox2	ENSMUST00000036372.6|Chsy1|ENSMUSG00000032640.9|chondroitin sulfate synthase 1
mm10_v2_chr3_-_127225847_127225915	0.149959	Sox2	ENSMUST00000182726.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain 	ENSMUST00000182779.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr13_+_56702983_56703112	0.14971	Sox2	ENSMUST00000069557.7|Smad5|ENSMUSG00000021540.10|SMAD family member 5 	ENSMUST00000109876.1|Smad5|ENSMUSG00000021540.10|SMAD family member 5
mm10_v2_chr10_+_36974558_36974579	0.149695	Sox2	ENSMUST00000105510.1|Hdac2|ENSMUSG00000019777.10|histone deacetylase 2
mm10_v2_chr2_+_153918391_153918396	0.149585	Sox2	ENSMUST00000109760.1|Bpifb3|ENSMUSG00000068008.2|BPI fold containing family B, member 3
mm10_v2_chr9_+_65361049_65361060	0.147655	Sox2	ENSMUST00000147185.1|Gm514|ENSMUSG00000086228.1|predicted gene 514
mm10_v2_chr13_-_86046901_86046904	0.147478	Sox2	ENSMUST00000131011.1|Cox7c|ENSMUSG00000017778.8|cytochrome c oxidase subunit VIIc
mm10_v2_chr4_+_115057410_115057438	0.147472	Sox2	ENSMUST00000136946.1|Tal1|ENSMUSG00000028717.6|T cell acute lymphocytic leukemia 1
mm10_v2_chr19_+_53142756_53142778	0.146692	Sox2	ENSMUST00000050096.7|Add3|ENSMUSG00000025026.8|adducin 3 (gamma)
mm10_v2_chr8_-_4259257_4259283	0.145391	Sox2	ENSMUST00000053252.7|Ctxn1|ENSMUSG00000048644.7|cortexin 1
mm10_v2_chr5_+_3543812_3543853	0.144528	Sox2	ENSMUST00000115527.3|Fam133b|ENSMUSG00000058503.7|family with sequence similarity 133, member B
mm10_v2_chr5_-_138155694_138155744	0.144152	Sox2	ENSMUST00000132318.1|Zfp113|ENSMUSG00000037007.11|zinc finger protein 113 	ENSMUST00000049393.8|Zfp113|ENSMUSG00000037007.11|zinc finger protein 113
mm10_v2_chr13_+_19214103_19214103	0.144141	Sox2	ENSMUST00000103558.1|Tcrg-C1|ENSMUSG00000076749.1|T cell receptor gamma, constant 1
mm10_v2_chr1_-_180813591_180813632	0.143778	Sox2	ENSMUST00000162118.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A 	ENSMUST00000159685.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A 	ENSMUST00000161308.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A
mm10_v2_chr6_+_39873271_39873271	0.143542	Sox2	ENSMUST00000180886.1|Tmem178b|ENSMUSG00000057716.6|transmembrane protein 178B
mm10_v2_chr4_+_59626189_59626253	0.143226	Sox2	ENSMUST00000070150.4|E130308A19Rik|ENSMUSG00000045071.7|RIKEN cDNA E130308A19 gene 	ENSMUST00000052420.6|E130308A19Rik|ENSMUSG00000045071.7|RIKEN cDNA E130308A19 gene
mm10_v2_chr7_-_130519961_130520004	0.142827	Sox2	ENSMUST00000178534.1|Ate1|ENSMUSG00000030850.9|arginyltransferase 1 	ENSMUST00000094017.3|Ate1|ENSMUSG00000030850.9|arginyltransferase 1
mm10_v2_chr2_-_57114970_57115038	0.142726	Sox2	ENSMUST00000028166.2|Nr4a2|ENSMUSG00000026826.7|nuclear receptor subfamily 4, group A, member 2
mm10_v2_chr10_+_107271827_107271850	0.142155	Sox2	ENSMUST00000020057.8|Lin7a|ENSMUSG00000019906.8|lin-7 homolog A (C. elegans) 	ENSMUST00000105280.3|Lin7a|ENSMUSG00000019906.8|lin-7 homolog A (C. elegans)
mm10_v2_chr2_-_20968881_20968957	0.142115	Sox2	ENSMUST00000114594.1|Arhgap21|ENSMUSG00000036591.9|Rho GTPase activating protein 21
mm10_v2_chr7_-_27195727_27195768	0.142113	Sox2	ENSMUST00000163311.2|Snrpa|ENSMUSG00000061479.9|small nuclear ribonucleoprotein polypeptide A 	ENSMUST00000126211.1|Snrpa|ENSMUSG00000061479.9|small nuclear ribonucleoprotein polypeptide A
mm10_v2_chr11_-_23633621_23633639	0.141924	Sox2	ENSMUST00000180260.1|0610010F05Rik|ENSMUSG00000042208.9|RIKEN cDNA 0610010F05 gene 	ENSMUST00000141353.1|0610010F05Rik|ENSMUSG00000042208.9|RIKEN cDNA 0610010F05 gene 	ENSMUST00000131612.1|0610010F05Rik|ENSMUSG00000042208.9|RIKEN cDNA 0610010F05 gene 	ENSMUST00000109532.2|0610010F05Rik|ENSMUSG00000042208.9|RIKEN cDNA 0610010F05 gene
mm10_v2_chr10_+_69925766_69925786	0.14183	Sox2	ENSMUST00000182269.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000183261.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000183074.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr9_+_69397933_69397972	0.141189	Sox2	ENSMUST00000117610.1|Narg2|ENSMUSG00000032235.9|NMDA receptor-regulated gene 2 	ENSMUST00000145538.1|Narg2|ENSMUSG00000032235.9|NMDA receptor-regulated gene 2 	ENSMUST00000117246.1|Narg2|ENSMUSG00000032235.9|NMDA receptor-regulated gene 2
mm10_v2_chr5_-_142905928_142905978	0.140328	Sox2	ENSMUST00000106216.2|Actb|ENSMUSG00000029580.8|actin, beta
mm10_v2_chr2_-_165034821_165034867	0.1403	Sox2	ENSMUST00000153905.1|Ncoa5|ENSMUSG00000039804.9|nuclear receptor coactivator 5 	ENSMUST00000040381.8|Ncoa5|ENSMUSG00000039804.9|nuclear receptor coactivator 5
mm10_v2_chrX_+_100729917_100729963	0.139948	Sox2	ENSMUST00000019503.7|Gdpd2|ENSMUSG00000019359.8|glycerophosphodiester phosphodiesterase domain containing 2
mm10_v2_chr5_+_66676098_66676257	0.139816	Sox2	ENSMUST00000031131.9|Uchl1|ENSMUSG00000029223.9|ubiquitin carboxy-terminal hydrolase L1
mm10_v2_chr10_-_62792243_62792368	0.138414	Sox2	ENSMUST00000020268.5|Ccar1|ENSMUSG00000020074.6|cell division cycle and apoptosis regulator 1
mm10_v2_chr2_-_132578128_132578153	0.137775	Sox2	ENSMUST00000028822.7|Gpcpd1|ENSMUSG00000027346.9|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
mm10_v2_chr2_+_119675062_119675095	0.137147	Sox2	ENSMUST00000028767.8|Rtf1|ENSMUSG00000027304.9|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm10_v2_chr7_+_45785331_45785390	0.136284	Sox2	ENSMUST00000120005.1|Lmtk3|ENSMUSG00000062044.7|lemur tyrosine kinase 3 	ENSMUST00000123585.1|Lmtk3|ENSMUSG00000062044.7|lemur tyrosine kinase 3
mm10_v2_chr10_+_70440844_70440937	0.136211	Sox2	ENSMUST00000173042.1|Fam13c|ENSMUSG00000043259.8|family with sequence similarity 13, member C 	ENSMUST00000062883.6|Fam13c|ENSMUSG00000043259.8|family with sequence similarity 13, member C
mm10_v2_chr17_-_35701937_35701964	0.135916	Sox2	ENSMUST00000155628.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr19_+_5038826_5038938	0.135087	Sox2	ENSMUST00000053705.6|B3gnt1|ENSMUSG00000047379.6|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1
mm10_v2_chr1_-_136346074_136346145	0.135055	Sox2	ENSMUST00000048309.6|Camsap2|ENSMUSG00000041570.9|calmodulin regulated spectrin-associated protein family, member 2
mm10_v2_chr2_+_124610573_124610613	0.134523	Sox2	ENSMUST00000103239.3|Sema6d|ENSMUSG00000027200.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D 	ENSMUST00000103240.2|Sema6d|ENSMUSG00000027200.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm10_v2_chr6_-_38876163_38876234	0.134513	Sox2	ENSMUST00000161779.1|Hipk2|ENSMUSG00000061436.9|homeodomain interacting protein kinase 2
mm10_v2_chr11_+_67586675_67586720	0.133928	Sox2	ENSMUST00000108680.1|Gas7|ENSMUSG00000033066.9|growth arrest specific 7
mm10_v2_chr18_+_80046854_80046904	0.133909	Sox2	ENSMUST00000070219.7|Pard6g|ENSMUSG00000056214.8|par-6 partitioning defective 6 homolog gamma (C. elegans)
mm10_v2_chr15_-_98871175_98871204	0.133501	Sox2	ENSMUST00000178486.2|Kmt2d|ENSMUSG00000048154.10|lysine (K)-specific methyltransferase 2D 	ENSMUST00000023741.9|Kmt2d|ENSMUSG00000048154.10|lysine (K)-specific methyltransferase 2D
mm10_v2_chr13_-_102905740_102905814	0.133443	Sox2	ENSMUST00000167462.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr8_-_67818218_67818269	0.13335	Sox2	ENSMUST00000059374.4|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr19_-_10949238_10949277	0.133218	Sox2	ENSMUST00000025639.6|Ccdc86|ENSMUSG00000024732.6|coiled-coil domain containing 86
mm10_v2_chr5_-_147076482_147076586	0.131958	Sox2	ENSMUST00000016664.7|Lnx2|ENSMUSG00000016520.7|ligand of numb-protein X 2
mm10_v2_chrX_-_72656135_72656199	0.130816	Sox2	ENSMUST00000055966.6|Gabra3|ENSMUSG00000031343.7|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3
mm10_v2_chr15_+_44428073_44428174	0.130481	Sox2	ENSMUST00000060652.3|Eny2|ENSMUSG00000022338.6|enhancer of yellow 2 homolog (Drosophila)
mm10_v2_chr8_+_74872692_74872740	0.12986	Sox2	ENSMUST00000034034.3|Isx|ENSMUSG00000031621.3|intestine specific homeobox
mm10_v2_chr7_+_141949982_141950086	0.129547	Sox2	ENSMUST00000105989.2|Brsk2|ENSMUSG00000053046.8|BR serine/threonine kinase 2 	ENSMUST00000075528.5|Brsk2|ENSMUSG00000053046.8|BR serine/threonine kinase 2 	ENSMUST00000174499.1|Brsk2|ENSMUSG00000053046.8|BR serine/threonine kinase 2
mm10_v2_chr16_-_50432340_50432409	0.128823	Sox2	ENSMUST00000066037.6|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089399.4|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089404.3|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000114477.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000138166.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila)
mm10_v2_chr5_-_135934590_135934613	0.128541	Sox2	ENSMUST00000055808.5|Ywhag|ENSMUSG00000051391.8|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm10_v2_chr19_-_40588338_40588371	0.128155	Sox2	ENSMUST00000176939.1|Aldh18a1|ENSMUSG00000025007.7|aldehyde dehydrogenase 18 family, member A1
mm10_v2_chr13_+_65278839_65278903	0.127393	Sox2	ENSMUST00000155732.1|Zfp369|ENSMUSG00000021514.11|zinc finger protein 369
mm10_v2_chr2_-_57124003_57124071	0.127076	Sox2	ENSMUST00000112629.1|Nr4a2|ENSMUSG00000026826.7|nuclear receptor subfamily 4, group A, member 2
mm10_v2_chr2_+_60209887_60210073	0.126877	Sox2	ENSMUST00000102748.4|March7|ENSMUSG00000026977.11|membrane-associated ring finger (C3HC4) 7 	ENSMUST00000102747.1|March7|ENSMUSG00000026977.11|membrane-associated ring finger (C3HC4) 7
mm10_v2_chr12_+_17544873_17544951	0.126664	Sox2	ENSMUST00000171737.1|Odc1|ENSMUSG00000011179.7|ornithine decarboxylase, structural 1
mm10_v2_chr6_-_134566913_134566995	0.125297	Sox2	ENSMUST00000032322.8|Lrp6|ENSMUSG00000030201.9|low density lipoprotein receptor-related protein 6
mm10_v2_chr10_+_127063599_127063655	0.124379	Sox2	ENSMUST00000120226.1|Cdk4|ENSMUSG00000006728.6|cyclin-dependent kinase 4 	ENSMUST00000133115.1|Cdk4|ENSMUSG00000006728.6|cyclin-dependent kinase 4
mm10_v2_chr2_-_24919572_24919616	0.124338	Sox2	ENSMUST00000046227.5|Ehmt1|ENSMUSG00000036893.10|euchromatic histone methyltransferase 1 	ENSMUST00000114432.2|Ehmt1|ENSMUSG00000036893.10|euchromatic histone methyltransferase 1 	ENSMUST00000091348.4|Ehmt1|ENSMUSG00000036893.10|euchromatic histone methyltransferase 1 	ENSMUST00000150379.1|Ehmt1|ENSMUSG00000036893.10|euchromatic histone methyltransferase 1 	ENSMUST00000152161.1|Ehmt1|ENSMUSG00000036893.10|euchromatic histone methyltransferase 1 	ENSMUST00000102938.3|Ehmt1|ENSMUSG00000036893.10|euchromatic histone methyltransferase 1
mm10_v2_chr1_+_64690443_64690467	0.123929	Sox2	ENSMUST00000114077.1|Ccnyl1|ENSMUSG00000070871.4|cyclin Y-like 1
mm10_v2_chr6_-_99028874_99028942	0.123926	Sox2	ENSMUST00000154163.2|Foxp1|ENSMUSG00000030067.11|forkhead box P1
mm10_v2_chr1_+_10993452_10993478	0.123772	Sox2	ENSMUST00000027056.5|Prex2|ENSMUSG00000048960.7|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
mm10_v2_chr7_+_5056856_5056916	0.123675	Sox2	ENSMUST00000131368.1|Ccdc106|ENSMUSG00000035228.8|coiled-coil domain containing 106 	ENSMUST00000123956.1|Ccdc106|ENSMUSG00000035228.8|coiled-coil domain containing 106
mm10_v2_chr8_-_105289465_105289541	0.123532	Sox2	ENSMUST00000171788.1|4931428F04Rik|ENSMUSG00000014837.8|RIKEN cDNA 4931428F04 gene 	ENSMUST00000014981.6|4931428F04Rik|ENSMUSG00000014837.8|RIKEN cDNA 4931428F04 gene
mm10_v2_chr6_+_15185439_15185452	0.122805	Sox2	ENSMUST00000118133.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr12_+_38780817_38780854	0.122736	Sox2	ENSMUST00000160856.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr5_+_64230285_64230312	0.122422	Sox2	ENSMUST00000119756.1|Tbc1d1|ENSMUSG00000029174.12|TBC1 domain family, member 1
mm10_v2_chr16_+_31664130_31664178	0.122393	Sox2	ENSMUST00000023454.5|Dlg1|ENSMUSG00000022770.10|discs, large homolog 1 (Drosophila)
mm10_v2_chr13_+_100651607_100651631	0.121883	Sox2	ENSMUST00000167256.1|Taf9|ENSMUSG00000052293.8|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr1_-_87156127_87156165	0.120676	Sox2	ENSMUST00000160810.1|Ecel1|ENSMUSG00000026247.7|endothelin converting enzyme-like 1
mm10_v2_chr10_-_79874565_79874634	0.120502	Sox2	ENSMUST00000167250.1|BC005764|ENSMUSG00000035835.8|cDNA sequence BC005764 	ENSMUST00000092325.4|BC005764|ENSMUSG00000035835.8|cDNA sequence BC005764
mm10_v2_chr19_+_40831248_40831292	0.120276	Sox2	ENSMUST00000025983.6|Ccnj|ENSMUSG00000025010.7|cyclin J 	ENSMUST00000120057.1|Ccnj|ENSMUSG00000025010.7|cyclin J
mm10_v2_chr8_-_33731793_33731823	0.119868	Sox2	ENSMUST00000079376.5|1700104B16Rik|ENSMUSG00000049476.6|RIKEN cDNA 1700104B16 gene
mm10_v2_chr17_+_74338943_74338987	0.119386	Sox2	ENSMUST00000024869.6|Spast|ENSMUSG00000024068.6|spastin
mm10_v2_chr10_+_28668360_28668404	0.119298	Sox2	ENSMUST00000060409.6|Themis|ENSMUSG00000049109.8|thymocyte selection associated 	ENSMUST00000056097.4|Themis|ENSMUSG00000049109.8|thymocyte selection associated 	ENSMUST00000105516.2|Themis|ENSMUSG00000049109.8|thymocyte selection associated
mm10_v2_chr13_+_117220584_117220637	0.118797	Sox2	ENSMUST00000022242.7|Emb|ENSMUSG00000021728.7|embigin
mm10_v2_chr9_-_119190383_119190410	0.118647	Sox2	ENSMUST00000093775.5|Slc22a14|ENSMUSG00000070280.7|solute carrier family 22 (organic cation transporter), member 14
mm10_v2_chr2_+_32151074_32151262	0.118368	Sox2	ENSMUST00000036691.7|Prrc2b|ENSMUSG00000039262.10|proline-rich coiled-coil 2B 	ENSMUST00000069817.8|Prrc2b|ENSMUSG00000039262.10|proline-rich coiled-coil 2B
mm10_v2_chr6_-_87590701_87590748	0.117706	Sox2	ENSMUST00000050887.7|Prokr1|ENSMUSG00000049409.7|prokineticin receptor 1
mm10_v2_chr2_-_113758638_113758655	0.117305	Sox2	ENSMUST00000099575.3|Grem1|ENSMUSG00000074934.3|gremlin 1
mm10_v2_chr10_+_76449074_76449093	0.116627	Sox2	ENSMUST00000092406.5|2610028H24Rik|ENSMUSG00000009114.11|RIKEN cDNA 2610028H24 gene
mm10_v2_chr5_-_50058908_50059010	0.116349	Sox2	ENSMUST00000030971.5|Gpr125|ENSMUSG00000029090.8|G protein-coupled receptor 125
mm10_v2_chr3_-_119783262_119783388	0.116076	Sox2	ENSMUST00000029780.7|Ptbp2|ENSMUSG00000028134.7|polypyrimidine tract binding protein 2
mm10_v2_chrX_-_18461371_18461402	0.115399	Sox2	ENSMUST00000044188.4|4930578C19Rik|ENSMUSG00000037358.6|RIKEN cDNA 4930578C19 gene
mm10_v2_chr18_+_23753708_23753725	0.114957	Sox2	ENSMUST00000115830.1|Mapre2|ENSMUSG00000024277.8|microtubule-associated protein, RP/EB family, member 2
mm10_v2_chr2_-_153241402_153241426	0.113411	Sox2	ENSMUST00000056924.7|Plagl2|ENSMUSG00000051413.11|pleiomorphic adenoma gene-like 2
mm10_v2_chr4_+_109235632_109235632	0.112607	Sox2	ENSMUST00000030285.7|Calr4|ENSMUSG00000028558.8|calreticulin 4
mm10_v2_chr10_-_84440591_84440604	0.112291	Sox2	ENSMUST00000020220.8|Nuak1|ENSMUSG00000020032.8|NUAK family, SNF1-like kinase, 1
mm10_v2_chr2_-_45110241_45110265	0.110841	Sox2	ENSMUST00000177302.1|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr4_-_63403330_63403354	0.110786	Sox2	ENSMUST00000035724.4|Akna|ENSMUSG00000039158.11|AT-hook transcription factor
mm10_v2_chr3_-_10351313_10351342	0.110695	Sox2	ENSMUST00000108377.1|Zfand1|ENSMUSG00000039795.8|zinc finger, AN1-type domain 1 	ENSMUST00000037839.5|Zfand1|ENSMUSG00000039795.8|zinc finger, AN1-type domain 1
mm10_v2_chr2_+_153649442_153649460	0.110334	Sox2	ENSMUST00000072997.3|Dnmt3b|ENSMUSG00000027478.9|DNA methyltransferase 3B 	ENSMUST00000109773.1|Dnmt3b|ENSMUSG00000027478.9|DNA methyltransferase 3B 	ENSMUST00000109774.2|Dnmt3b|ENSMUSG00000027478.9|DNA methyltransferase 3B 	ENSMUST00000081628.6|Dnmt3b|ENSMUSG00000027478.9|DNA methyltransferase 3B 	ENSMUST00000103151.1|Dnmt3b|ENSMUSG00000027478.9|DNA methyltransferase 3B 	ENSMUST00000088976.5|Dnmt3b|ENSMUSG00000027478.9|DNA methyltransferase 3B 	ENSMUST00000109772.1|Dnmt3b|ENSMUSG00000027478.9|DNA methyltransferase 3B 	ENSMUST00000103150.3|Dnmt3b|ENSMUSG00000027478.9|DNA methyltransferase 3B 	ENSMUST00000056495.7|Dnmt3b|ENSMUSG00000027478.9|DNA methyltransferase 3B
mm10_v2_chr15_-_98534221_98534305	0.109671	Sox2	ENSMUST00000116400.2|Kansl2|ENSMUSG00000022992.10|KAT8 regulatory NSL complex subunit 2 	ENSMUST00000023727.10|Kansl2|ENSMUSG00000022992.10|KAT8 regulatory NSL complex subunit 2
mm10_v2_chr4_-_132212060_132212130	0.109061	Sox2	ENSMUST00000085181.4|Ythdf2|ENSMUSG00000040025.11|YTH domain family 2
mm10_v2_chr10_+_69925954_69926133	0.10897	Sox2	ENSMUST00000181974.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000182795.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000182437.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr9_-_45906369_45906437	0.108449	Sox2	ENSMUST00000161187.1|Rnf214|ENSMUSG00000042790.9|ring finger protein 214
mm10_v2_chr1_-_93305850_93305915	0.108135	Sox2	ENSMUST00000112944.1|Mterfd2|ENSMUSG00000026273.7|MTERF domain containing 2 	ENSMUST00000112942.1|Mterfd2|ENSMUSG00000026273.7|MTERF domain containing 2 	ENSMUST00000027492.7|Mterfd2|ENSMUSG00000026273.7|MTERF domain containing 2
mm10_v2_chr11_+_70432627_70432707	0.108107	Sox2	ENSMUST00000084954.6|Arrb2|ENSMUSG00000060216.9|arrestin, beta 2 	ENSMUST00000108568.3|Arrb2|ENSMUSG00000060216.9|arrestin, beta 2 	ENSMUST00000079056.2|Arrb2|ENSMUSG00000060216.9|arrestin, beta 2 	ENSMUST00000102564.4|Arrb2|ENSMUSG00000060216.9|arrestin, beta 2 	ENSMUST00000124943.1|Arrb2|ENSMUSG00000060216.9|arrestin, beta 2 	ENSMUST00000150076.1|Arrb2|ENSMUSG00000060216.9|arrestin, beta 2 	ENSMUST00000102563.1|Arrb2|ENSMUSG00000060216.9|arrestin, beta 2
mm10_v2_chr15_+_75940952_75941015	0.107872	Sox2	ENSMUST00000037260.6|Zfp623|ENSMUSG00000050846.8|zinc finger protein 623
mm10_v2_chr1_+_58393119_58393147	0.107667	Sox2	ENSMUST00000050552.8|Bzw1|ENSMUSG00000051223.8|basic leucine zipper and W2 domains 1
mm10_v2_chr1_+_133246092_133246099	0.107511	Sox2	ENSMUST00000038295.8|Plekha6|ENSMUSG00000041757.9|pleckstrin homology domain containing, family A member 6 	ENSMUST00000105082.2|Plekha6|ENSMUSG00000041757.9|pleckstrin homology domain containing, family A member 6
mm10_v2_chr11_+_11686213_11686282	0.107179	Sox2	ENSMUST00000076700.4|Ikzf1|ENSMUSG00000018654.11|IKAROS family zinc finger 1 	ENSMUST00000048122.6|Ikzf1|ENSMUSG00000018654.11|IKAROS family zinc finger 1
mm10_v2_chr11_+_46055973_46056068	0.10694	Sox2	ENSMUST00000011400.7|Adam19|ENSMUSG00000011256.10|a disintegrin and metallopeptidase domain 19 (meltrin beta)
mm10_v2_chr7_+_46397648_46397783	0.106856	Sox2	ENSMUST00000160433.1|Kcnc1|ENSMUSG00000058975.6|potassium voltage gated channel, Shaw-related subfamily, member 1
mm10_v2_chr13_+_41655697_41655697	0.106795	Sox2	ENSMUST00000067176.8|Gm5082|ENSMUSG00000054258.8|predicted gene 5082
mm10_v2_chr4_+_100095791_100095867	0.10658	Sox2	ENSMUST00000039630.5|Ror1|ENSMUSG00000035305.5|receptor tyrosine kinase-like orphan receptor 1
mm10_v2_chr15_-_37007382_37007402	0.106323	Sox2	ENSMUST00000078976.7|Zfp706|ENSMUSG00000062397.7|zinc finger protein 706
mm10_v2_chr5_+_108065742_108065767	0.105381	Sox2	ENSMUST00000081567.4|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2 	ENSMUST00000170319.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2 	ENSMUST00000112626.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2
mm10_v2_chr17_+_47726834_47726848	0.105082	Sox2	ENSMUST00000024782.5|Pgc|ENSMUSG00000023987.8|progastricsin (pepsinogen C) 	ENSMUST00000144955.1|Pgc|ENSMUSG00000023987.8|progastricsin (pepsinogen C)
mm10_v2_chr9_-_65827544_65827576	0.10418	Sox2	ENSMUST00000159109.1|Zfp609|ENSMUSG00000040524.9|zinc finger protein 609
mm10_v2_chr10_+_84756055_84756084	0.103394	Sox2	ENSMUST00000060397.6|Rfx4|ENSMUSG00000020037.9|regulatory factor X, 4 (influences HLA class II expression)
mm10_v2_chr17_-_70853482_70853546	0.103297	Sox2	ENSMUST00000118283.1|Tgif1|ENSMUSG00000047407.11|TGFB-induced factor homeobox 1
mm10_v2_chr1_+_137966529_137966532	0.102985	Sox2	ENSMUST00000182158.1|A430106G13Rik|ENSMUSG00000098206.1|RIKEN cDNA A430106G13 gene
mm10_v2_chr15_-_98918131_98918231	0.102868	Sox2	ENSMUST00000023736.8|Lmbr1l|ENSMUSG00000022999.8|limb region 1 like
mm10_v2_chr5_+_138116903_138117041	0.102546	Sox2	ENSMUST00000062350.8|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110961.2|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000080732.3|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110960.2|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000142185.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000136425.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110959.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21
mm10_v2_chr11_-_33843526_33843629	0.101529	Sox2	ENSMUST00000065970.5|Kcnip1|ENSMUSG00000053519.9|Kv channel-interacting protein 1 	ENSMUST00000109340.2|Kcnip1|ENSMUSG00000053519.9|Kv channel-interacting protein 1
mm10_v2_chr3_-_96058446_96058466	0.100868	Sox2	ENSMUST00000015891.5|Vps45|ENSMUSG00000015747.5|vacuolar protein sorting 45 (yeast)
mm10_v2_chr6_-_144209471_144209487	0.100346	Sox2	ENSMUST00000038815.7|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr7_+_24507099_24507110	0.100077	Sox2	ENSMUST00000177228.1|Zfp428|ENSMUSG00000064264.8|zinc finger protein 428
mm10_v2_chr11_-_5950018_5950081	0.100074	Sox2	ENSMUST00000102920.3|Gck|ENSMUSG00000041798.9|glucokinase
mm10_v2_chr4_-_44167988_44168008	0.0997282	Sox2	ENSMUST00000143337.1|Rnf38|ENSMUSG00000035696.9|ring finger protein 38
mm10_v2_chr16_-_18289199_18289260	0.0995333	Sox2	ENSMUST00000009321.4|Dgcr8|ENSMUSG00000022718.5|DiGeorge syndrome critical region gene 8 	ENSMUST00000115633.1|Dgcr8|ENSMUSG00000022718.5|DiGeorge syndrome critical region gene 8
mm10_v2_chr18_+_82914632_82914664	0.0994155	Sox2	ENSMUST00000071233.6|Zfp516|ENSMUSG00000058881.6|zinc finger protein 516
mm10_v2_chr11_+_60699758_60699845	0.099265	Sox2	ENSMUST00000108719.3|Llgl1|ENSMUSG00000020536.6|lethal giant larvae homolog 1 (Drosophila)
mm10_v2_chr12_+_31438209_31438227	0.0991978	Sox2	ENSMUST00000001254.5|Slc26a3|ENSMUSG00000001225.6|solute carrier family 26, member 3
mm10_v2_chr15_+_99702278_99702312	0.0987327	Sox2	ENSMUST00000023759.4|Smarcd1|ENSMUSG00000023018.4|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm10_v2_chr18_-_15063560_15063617	0.0979207	Sox2	ENSMUST00000168989.1|Kctd1|ENSMUSG00000036225.8|potassium channel tetramerisation domain containing 1
mm10_v2_chrX_+_74270812_74270979	0.0961919	Sox2	ENSMUST00000008826.7|Rpl10|ENSMUSG00000008682.7|ribosomal protein L10 	ENSMUST00000151702.1|Rpl10|ENSMUSG00000008682.7|ribosomal protein L10 	ENSMUST00000074085.5|Rpl10|ENSMUSG00000008682.7|ribosomal protein L10 	ENSMUST00000135690.1|Rpl10|ENSMUSG00000008682.7|ribosomal protein L10
mm10_v2_chr6_-_86733268_86733394	0.0960249	Sox2	ENSMUST00000001185.7|Gmcl1|ENSMUSG00000001157.7|germ cell-less homolog 1 (Drosophila)
mm10_v2_chr3_-_133234939_133234961	0.0959739	Sox2	ENSMUST00000161932.1|Arhgef38|ENSMUSG00000040969.8|Rho guanine nucleotide exchange factor (GEF) 38
mm10_v2_chr6_-_28831747_28831747	0.0958783	Sox2	ENSMUST00000062304.5|Lrrc4|ENSMUSG00000049939.5|leucine rich repeat containing 4
mm10_v2_chr9_-_51328898_51328923	0.0957596	Sox2	ENSMUST00000039959.4|1810046K07Rik|ENSMUSG00000036027.5|RIKEN cDNA 1810046K07 gene
mm10_v2_chr11_-_99230998_99231019	0.0956803	Sox2	ENSMUST00000103133.3|Smarce1|ENSMUSG00000037935.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
mm10_v2_chr3_-_36613285_36613367	0.0954919	Sox2	ENSMUST00000108155.1|Bbs7|ENSMUSG00000037325.4|Bardet-Biedl syndrome 7 (human)
mm10_v2_chr13_-_96435952_96435967	0.0954589	Sox2	ENSMUST00000181761.1|Ankdd1b|ENSMUSG00000047117.6|ankyrin repeat and death domain containing 1B
mm10_v2_chr4_-_136602641_136602760	0.0954585	Sox2	ENSMUST00000105847.1|Kdm1a|ENSMUSG00000036940.9|lysine (K)-specific demethylase 1A 	ENSMUST00000116273.2|Kdm1a|ENSMUSG00000036940.9|lysine (K)-specific demethylase 1A
mm10_v2_chr10_+_69925484_69925532	0.0951175	Sox2	ENSMUST00000182692.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092433.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr6_+_28215555_28215576	0.0950405	Sox2	ENSMUST00000143099.1|6530409C15Rik|ENSMUSG00000043340.3|RIKEN cDNA 6530409C15 gene 	ENSMUST00000143551.1|6530409C15Rik|ENSMUSG00000043340.3|RIKEN cDNA 6530409C15 gene
mm10_v2_chr10_+_26078255_26078255	0.0946563	Sox2	ENSMUST00000041011.3|Gm9767|ENSMUSG00000039098.3|predicted gene 9767
mm10_v2_chr9_-_79718518_79718592	0.0941852	Sox2	ENSMUST00000071750.6|Col12a1|ENSMUSG00000032332.11|collagen, type XII, alpha 1
mm10_v2_chr8_+_92357787_92357801	0.0940256	Sox2	ENSMUST00000034184.10|Irx5|ENSMUSG00000031737.10|Iroquois related homeobox 5 (Drosophila)
mm10_v2_chr14_-_62456286_62456289	0.0935133	Sox2	ENSMUST00000165651.1|Gucy1b2|ENSMUSG00000021933.5|guanylate cyclase 1, soluble, beta 2 	ENSMUST00000022501.3|Gucy1b2|ENSMUSG00000021933.5|guanylate cyclase 1, soluble, beta 2
mm10_v2_chr5_-_9725305_9725352	0.0933239	Sox2	ENSMUST00000004076.3|Grm3|ENSMUSG00000003974.5|glutamate receptor, metabotropic 3
mm10_v2_chr10_+_94575257_94575295	0.0932007	Sox2	ENSMUST00000121471.1|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3
mm10_v2_chr1_-_25228814_25228834	0.0927	Sox2	ENSMUST00000126626.1|Bai3|ENSMUSG00000033569.11|brain-specific angiogenesis inhibitor 3
mm10_v2_chr12_-_45074457_45074493	0.0926518	Sox2	ENSMUST00000053768.6|Stxbp6|ENSMUSG00000046314.9|syntaxin binding protein 6 (amisyn)
mm10_v2_chr10_+_93831555_93831555	0.0921513	Sox2	ENSMUST00000095333.4|Usp44|ENSMUSG00000020020.7|ubiquitin specific peptidase 44
mm10_v2_chr14_+_60378242_60378292	0.0918115	Sox2	ENSMUST00000022561.6|Amer2|ENSMUSG00000021986.7|APC membrane recruitment 2
mm10_v2_chr4_-_75278246_75278338	0.0915827	Sox2	ENSMUST00000030103.8|Tmem261|ENSMUSG00000028398.8|transmembrane protein 261
mm10_v2_chr4_+_132638987_132639118	0.0913968	Sox2	ENSMUST00000135299.1|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila) 	ENSMUST00000081726.6|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila) 	ENSMUST00000180250.1|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila) 	ENSMUST00000020197.7|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila) 	ENSMUST00000079157.4|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila)
mm10_v2_chr17_-_87446854_87446935	0.0909247	Sox2	ENSMUST00000040440.6|Calm2|ENSMUSG00000036438.6|calmodulin 2
mm10_v2_chr11_+_98203059_98203059	0.0903005	Sox2	ENSMUST00000107539.1|Cdk12|ENSMUSG00000003119.8|cyclin-dependent kinase 12
mm10_v2_chr9_-_107872403_107872422	0.0902818	Sox2	ENSMUST00000183035.1|Rbm6|ENSMUSG00000032582.8|RNA binding motif protein 6
mm10_v2_chr1_-_180330550_180330550	0.0901671	Sox2	ENSMUST00000050581.3|Gm5069|ENSMUSG00000055676.3|predicted pseudogene 5069
mm10_v2_chr14_-_78088994_78089031	0.0900026	Sox2	ENSMUST00000118785.2|Fam216b|ENSMUSG00000045655.9|family with sequence similarity 216, member B 	ENSMUST00000066437.4|Fam216b|ENSMUSG00000045655.9|family with sequence similarity 216, member B
mm10_v2_chr11_+_83964419_83964478	0.0897228	Sox2	ENSMUST00000049714.8|Synrg|ENSMUSG00000034940.9|synergin, gamma 	ENSMUST00000092834.5|Synrg|ENSMUSG00000034940.9|synergin, gamma 	ENSMUST00000183714.1|Synrg|ENSMUSG00000034940.9|synergin, gamma 	ENSMUST00000183456.1|Synrg|ENSMUSG00000034940.9|synergin, gamma
mm10_v2_chr9_+_45906513_45906569	0.0897019	Sox2	ENSMUST00000039059.6|Pcsk7|ENSMUSG00000035382.8|proprotein convertase subtilisin/kexin type 7
mm10_v2_chr1_+_93990509_93990509	0.0896265	Sox2	ENSMUST00000097632.3|Gm6086|ENSMUSG00000073608.3|predicted gene 6086
mm10_v2_chr3_+_138443085_138443176	0.0892388	Sox2	ENSMUST00000005964.2|Adh5|ENSMUSG00000028138.2|alcohol dehydrogenase 5 (class III), chi polypeptide
mm10_v2_chr13_-_95618442_95618475	0.0885331	Sox2	ENSMUST00000059193.5|F2r|ENSMUSG00000048376.5|coagulation factor II (thrombin) receptor
mm10_v2_chr16_+_41532851_41532865	0.087222	Sox2	ENSMUST00000078873.4|Lsamp|ENSMUSG00000061080.5|limbic system-associated membrane protein
mm10_v2_chr2_-_181698433_181698447	0.0871054	Sox2	ENSMUST00000052416.3|4930526D03Rik|ENSMUSG00000045794.3|RIKEN cDNA 4930526D03 gene
mm10_v2_chr2_-_7395968_7396011	0.0869916	Sox2	ENSMUST00000002176.6|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr1_+_132191436_132191436	0.0864911	Sox2	ENSMUST00000112357.2|Lemd1|ENSMUSG00000079330.2|LEM domain containing 1
mm10_v2_chr13_-_58402103_58402149	0.0859556	Sox2	ENSMUST00000176305.1|Hnrnpk|ENSMUSG00000021546.11|heterogeneous nuclear ribonucleoprotein K 	ENSMUST00000176558.1|Hnrnpk|ENSMUSG00000021546.11|heterogeneous nuclear ribonucleoprotein K 	ENSMUST00000176849.1|Hnrnpk|ENSMUSG00000021546.11|heterogeneous nuclear ribonucleoprotein K
mm10_v2_chr12_+_111039334_111039400	0.085745	Sox2	ENSMUST00000084968.7|Rcor1|ENSMUSG00000037896.11|REST corepressor 1
mm10_v2_chr5_-_131538687_131538717	0.0851694	Sox2	ENSMUST00000161374.1|Auts2|ENSMUSG00000029673.11|autism susceptibility candidate 2
mm10_v2_chr17_-_57059795_57059863	0.084812	Sox2	ENSMUST00000040280.7|Slc25a23|ENSMUSG00000046329.8|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23
mm10_v2_chr6_-_83527773_83527810	0.0844591	Sox2	ENSMUST00000152029.1|Actg2|ENSMUSG00000059430.8|actin, gamma 2, smooth muscle, enteric
mm10_v2_chr12_-_111713185_111713257	0.0842968	Sox2	ENSMUST00000054636.6|Bag5|ENSMUSG00000049792.6|BCL2-associated athanogene 5
mm10_v2_chr4_+_47208005_47208161	0.0841643	Sox2	ENSMUST00000082303.6|Col15a1|ENSMUSG00000028339.11|collagen, type XV, alpha 1 	ENSMUST00000102917.4|Col15a1|ENSMUSG00000028339.11|collagen, type XV, alpha 1
mm10_v2_chr17_+_67697253_67697276	0.0841154	Sox2	ENSMUST00000035471.7|Lama1|ENSMUSG00000032796.7|laminin, alpha 1
mm10_v2_chr4_-_155863362_155863362	0.0839114	Sox2	ENSMUST00000030949.3|Tas1r3|ENSMUSG00000029072.3|taste receptor, type 1, member 3
mm10_v2_chr6_-_28397999_28398023	0.083701	Sox2	ENSMUST00000035930.4|Zfp800|ENSMUSG00000039841.8|zinc finger protein 800
mm10_v2_chr16_+_11405648_11405713	0.0836313	Sox2	ENSMUST00000096273.2|Snx29|ENSMUSG00000071669.8|sorting nexin 29
mm10_v2_chr12_+_38781093_38781129	0.0829851	Sox2	ENSMUST00000161513.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr5_+_90931196_90931311	0.0820231	Sox2	ENSMUST00000071652.4|Mthfd2l|ENSMUSG00000029376.7|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like
mm10_v2_chr9_-_24774276_24774303	0.0819217	Sox2	ENSMUST00000052946.4|Tbx20|ENSMUSG00000031965.8|T-box 20 	ENSMUST00000166018.2|Tbx20|ENSMUSG00000031965.8|T-box 20
mm10_v2_chr1_-_191164815_191164818	0.0816282	Sox2	ENSMUST00000171798.1|Fam71a|ENSMUSG00000091017.1|family with sequence similarity 71, member A
mm10_v2_chr14_-_41008256_41008275	0.0815935	Sox2	ENSMUST00000136661.1|Fam213a|ENSMUSG00000021792.9|family with sequence similarity 213, member A
mm10_v2_chr6_-_83527986_83527993	0.0808628	Sox2	ENSMUST00000121731.1|Actg2|ENSMUSG00000059430.8|actin, gamma 2, smooth muscle, enteric
mm10_v2_chr15_-_36794498_36794547	0.0805992	Sox2	ENSMUST00000110361.1|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 	ENSMUST00000022894.7|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 	ENSMUST00000110359.1|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm10_v2_chr6_+_54681687_54681783	0.0805517	Sox2	ENSMUST00000046276.6|2410066E13Rik|ENSMUSG00000038065.7|RIKEN cDNA 2410066E13 gene
mm10_v2_chr11_-_20332654_20332688	0.0798017	Sox2	ENSMUST00000004634.6|Slc1a4|ENSMUSG00000020142.6|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
mm10_v2_chr11_+_69846374_69846387	0.0794548	Sox2	ENSMUST00000108632.1|Plscr3|ENSMUSG00000019461.6|phospholipid scramblase 3
mm10_v2_chr15_-_101743099_101743117	0.0793182	Sox2	ENSMUST00000023710.4|Krt71|ENSMUSG00000051879.3|keratin 71
mm10_v2_chr15_-_39943689_39943788	0.0791226	Sox2	ENSMUST00000022916.5|Lrp12|ENSMUSG00000022305.6|low density lipoprotein-related protein 12
mm10_v2_chr18_+_13006990_13006990	0.0790899	Sox2	ENSMUST00000041676.2|Hrh4|ENSMUSG00000037346.4|histamine receptor H4
mm10_v2_chr2_-_7395879_7395912	0.0789805	Sox2	ENSMUST00000182404.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr16_+_43503607_43503642	0.0788054	Sox2	ENSMUST00000126100.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000123047.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000156981.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr10_+_57650977_57650985	0.0782928	Sox2	ENSMUST00000066028.6|Pkib|ENSMUSG00000019876.9|protein kinase inhibitor beta, cAMP dependent, testis specific
mm10_v2_chr19_+_40831296_40831313	0.0780672	Sox2	ENSMUST00000119316.1|Ccnj|ENSMUSG00000025010.7|cyclin J
mm10_v2_chr2_+_153241502_153241603	0.0775097	Sox2	ENSMUST00000049863.5|Pofut1|ENSMUSG00000046020.7|protein O-fucosyltransferase 1 	ENSMUST00000099192.3|Pofut1|ENSMUSG00000046020.7|protein O-fucosyltransferase 1 	ENSMUST00000109794.1|Pofut1|ENSMUSG00000046020.7|protein O-fucosyltransferase 1
mm10_v2_chr7_-_4771279_4771328	0.0774723	Sox2	ENSMUST00000174409.1|Fam71e2|ENSMUSG00000092518.3|family with sequence similarity 71, member E2
mm10_v2_chr11_-_33843405_33843461	0.0774216	Sox2	ENSMUST00000101368.2|Kcnip1|ENSMUSG00000053519.9|Kv channel-interacting protein 1
mm10_v2_chr19_+_45018114_45018153	0.0767543	Sox2	ENSMUST00000178087.1|Lzts2|ENSMUSG00000035342.7|leucine zipper, putative tumor suppressor 2
mm10_v2_chr3_+_95624971_95625021	0.076564	Sox2	ENSMUST00000058230.6|Ensa|ENSMUSG00000038619.6|endosulfine alpha 	ENSMUST00000037983.4|Ensa|ENSMUSG00000038619.6|endosulfine alpha
mm10_v2_chr6_+_100833606_100833663	0.0761352	Sox2	ENSMUST00000063854.4|Ppp4r2|ENSMUSG00000052144.6|protein phosphatase 4, regulatory subunit 2
mm10_v2_chr18_+_60212080_60212122	0.0760936	Sox2	ENSMUST00000031549.5|Gm4951|ENSMUSG00000073555.1|predicted gene 4951
mm10_v2_chr4_-_114987220_114987256	0.0754646	Sox2	ENSMUST00000030491.8|Cmpk1|ENSMUSG00000028719.8|cytidine monophosphate (UMP-CMP) kinase 1
mm10_v2_chr6_+_47835650_47835725	0.0750762	Sox2	ENSMUST00000079881.4|Zfp398|ENSMUSG00000062519.7|zinc finger protein 398 	ENSMUST00000114598.1|Zfp398|ENSMUSG00000062519.7|zinc finger protein 398
mm10_v2_chr11_-_100613334_100613368	0.0743468	Sox2	ENSMUST00000146840.1|Dnajc7|ENSMUSG00000014195.9|DnaJ (Hsp40) homolog, subfamily C, member 7
mm10_v2_chr2_+_10047838_10047838	0.0741551	Sox2	ENSMUST00000181588.1|C630004M23Rik|ENSMUSG00000097273.1|RIKEN cDNA C630004M23 gene
mm10_v2_chr7_-_4771262_4771275	0.0735521	Sox2	ENSMUST00000108580.2|Fam71e2|ENSMUSG00000092518.3|family with sequence similarity 71, member E2
mm10_v2_chr2_-_121380940_121380947	0.0733314	Sox2	ENSMUST00000038389.8|Strc|ENSMUSG00000033498.8|stereocilin
mm10_v2_chr1_+_136624901_136624949	0.0731477	Sox2	ENSMUST00000047734.8|Zfp281|ENSMUSG00000041483.8|zinc finger protein 281 	ENSMUST00000112046.1|Zfp281|ENSMUSG00000041483.8|zinc finger protein 281
mm10_v2_chr9_-_66069702_66069741	0.0730905	Sox2	ENSMUST00000044711.5|Snx22|ENSMUSG00000039452.5|sorting nexin 22
mm10_v2_chr10_+_82859198_82859217	0.0730876	Sox2	ENSMUST00000020484.6|Txnrd1|ENSMUSG00000020250.9|thioredoxin reductase 1
mm10_v2_chr3_+_40745430_40745459	0.0730454	Sox2	ENSMUST00000077083.6|Hspa4l|ENSMUSG00000025757.7|heat shock protein 4 like
mm10_v2_chr3_-_30509462_30509514	0.0730144	Sox2	ENSMUST00000173899.1|Mecom|ENSMUSG00000027684.10|MDS1 and EVI1 complex locus
mm10_v2_chr4_+_109235413_109235413	0.0727455	Sox2	ENSMUST00000106628.1|Calr4|ENSMUSG00000028558.8|calreticulin 4
mm10_v2_chr7_-_127615226_127615272	0.0726041	Sox2	ENSMUST00000084564.3|Zfp629|ENSMUSG00000045639.8|zinc finger protein 629
mm10_v2_chr1_-_54926311_54926402	0.0724645	Sox2	ENSMUST00000179030.1|Ankrd44|ENSMUSG00000052331.8|ankyrin repeat domain 44 	ENSMUST00000044359.9|Ankrd44|ENSMUSG00000052331.8|ankyrin repeat domain 44
mm10_v2_chr8_+_34807287_34807310	0.0724167	Sox2	ENSMUST00000033930.4|Dusp4|ENSMUSG00000031530.6|dual specificity phosphatase 4
mm10_v2_chr7_-_141429351_141429429	0.072376	Sox2	ENSMUST00000164387.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1 	ENSMUST00000137488.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1 	ENSMUST00000084436.3|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1
mm10_v2_chr17_-_34804546_34804568	0.0722582	Sox2	ENSMUST00000025223.8|Cyp21a1|ENSMUSG00000024365.9|cytochrome P450, family 21, subfamily a, polypeptide 1
mm10_v2_chr3_+_89215192_89215243	0.0722274	Sox2	ENSMUST00000142051.1|Thbs3|ENSMUSG00000028047.5|thrombospondin 3 	ENSMUST00000119084.1|Thbs3|ENSMUSG00000028047.5|thrombospondin 3
mm10_v2_chr11_+_11685909_11685947	0.0719751	Sox2	ENSMUST00000065433.5|Ikzf1|ENSMUSG00000018654.11|IKAROS family zinc finger 1
mm10_v2_chr2_+_90987603_90987746	0.0716023	Sox2	ENSMUST00000111452.1|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1 	ENSMUST00000111455.2|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1
mm10_v2_chrX_+_56968120_56968120	0.0714352	Sox2	ENSMUST00000145035.1|Gpr112|ENSMUSG00000053852.5|G protein-coupled receptor 112
mm10_v2_chr13_+_49341549_49341623	0.0709181	Sox2	ENSMUST00000110084.2|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila) 	ENSMUST00000048544.6|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila) 	ENSMUST00000110085.3|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila)
mm10_v2_chrX_-_136868537_136868755	0.0708442	Sox2	ENSMUST00000058814.6|Rab9b|ENSMUSG00000043463.6|RAB9B, member RAS oncogene family
mm10_v2_chr9_-_110624361_110624439	0.0705926	Sox2	ENSMUST00000035069.9|Nradd|ENSMUSG00000032491.10|neurotrophin receptor associated death domain
mm10_v2_chr10_-_11080956_11081023	0.0705793	Sox2	ENSMUST00000105560.1|Grm1|ENSMUSG00000019828.7|glutamate receptor, metabotropic 1
mm10_v2_chr2_-_60125651_60125775	0.0704766	Sox2	ENSMUST00000112550.1|Baz2b|ENSMUSG00000026987.10|bromodomain adjacent to zinc finger domain, 2B
mm10_v2_chr7_-_105574324_105574402	0.0701277	Sox2	ENSMUST00000081165.7|Apbb1|ENSMUSG00000037032.9|amyloid beta (A4) precursor protein-binding, family B, member 1
mm10_v2_chr3_+_88142328_88142483	0.0700051	Sox2	ENSMUST00000001455.6|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D 	ENSMUST00000119251.1|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D
mm10_v2_chr18_-_61665525_61665537	0.0699217	Sox2	ENSMUST00000181155.1|Mir143hg|ENSMUSG00000097324.2|Mir143 and Mir145 host gene (non-coding RNA)
mm10_v2_chr11_+_3488275_3488287	0.069325	Sox2	ENSMUST00000064265.6|Pla2g3|ENSMUSG00000034579.11|phospholipase A2, group III
mm10_v2_chr18_+_35726975_35726994	0.0691019	Sox2	ENSMUST00000097617.2|1700066B19Rik|ENSMUSG00000073598.3|RIKEN cDNA 1700066B19 gene
mm10_v2_chr3_-_158031705_158031774	0.0683953	Sox2	ENSMUST00000072875.8|Srsf11|ENSMUSG00000055436.12|serine/arginine-rich splicing factor 11
mm10_v2_chr3_+_69316857_69316869	0.0676387	Sox2	ENSMUST00000029355.6|Ppm1l|ENSMUSG00000027784.8|protein phosphatase 1 (formerly 2C)-like
mm10_v2_chr2_-_79908428_79908438	0.0676306	Sox2	ENSMUST00000102652.3|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent 	ENSMUST00000102651.3|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent
mm10_v2_chr11_-_98022594_98022671	0.067614	Sox2	ENSMUST00000103144.3|Cacnb1|ENSMUSG00000020882.11|calcium channel, voltage-dependent, beta 1 subunit 	ENSMUST00000017552.6|Cacnb1|ENSMUSG00000020882.11|calcium channel, voltage-dependent, beta 1 subunit 	ENSMUST00000092736.4|Cacnb1|ENSMUSG00000020882.11|calcium channel, voltage-dependent, beta 1 subunit 	ENSMUST00000107562.1|Cacnb1|ENSMUSG00000020882.11|calcium channel, voltage-dependent, beta 1 subunit
mm10_v2_chr7_+_127967457_127967508	0.0669651	Sox2	ENSMUST00000106251.3|Fus|ENSMUSG00000030795.12|fused in sarcoma 	ENSMUST00000077609.5|Fus|ENSMUSG00000030795.12|fused in sarcoma 	ENSMUST00000121616.2|Fus|ENSMUSG00000030795.12|fused in sarcoma
mm10_v2_chr7_+_5056706_5056741	0.0655226	Sox2	ENSMUST00000144802.1|Ccdc106|ENSMUSG00000035228.8|coiled-coil domain containing 106
mm10_v2_chr18_-_68300329_68300336	0.0654281	Sox2	ENSMUST00000042852.6|Fam210a|ENSMUSG00000038121.6|family with sequence similarity 210, member A
mm10_v2_chr3_+_16183177_16183206	0.0653693	Sox2	ENSMUST00000108345.2|Ythdf3|ENSMUSG00000047213.8|YTH domain family 3 	ENSMUST00000108346.2|Ythdf3|ENSMUSG00000047213.8|YTH domain family 3
mm10_v2_chr12_-_112674193_112674276	0.0649895	Sox2	ENSMUST00000001780.3|Akt1|ENSMUSG00000001729.8|thymoma viral proto-oncogene 1
mm10_v2_chr11_+_60699718_60699750	0.0644933	Sox2	ENSMUST00000052346.3|Llgl1|ENSMUSG00000020536.6|lethal giant larvae homolog 1 (Drosophila)
mm10_v2_chr5_-_100038869_100038885	0.0644442	Sox2	ENSMUST00000153442.1|Hnrnpdl|ENSMUSG00000029328.9|heterogeneous nuclear ribonucleoprotein D-like
mm10_v2_chr6_-_144209558_144209647	0.0642518	Sox2	ENSMUST00000111749.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5 	ENSMUST00000170367.2|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr4_-_44711446_44711446	0.0641206	Sox2	ENSMUST00000014174.7|Pax5|ENSMUSG00000014030.9|paired box gene 5
mm10_v2_chr2_+_118900377_118900397	0.0637591	Sox2	ENSMUST00000151162.1|Bahd1|ENSMUSG00000040007.8|bromo adjacent homology domain containing 1
mm10_v2_chr2_-_165034770_165034820	0.0637457	Sox2	ENSMUST00000122070.1|Ncoa5|ENSMUSG00000039804.9|nuclear receptor coactivator 5 	ENSMUST00000121377.1|Ncoa5|ENSMUSG00000039804.9|nuclear receptor coactivator 5
mm10_v2_chr11_-_62731865_62731910	0.0636575	Sox2	ENSMUST00000150336.1|Zfp287|ENSMUSG00000005267.7|zinc finger protein 287
mm10_v2_chr7_-_127615208_127615219	0.063568	Sox2	ENSMUST00000122066.1|Zfp629|ENSMUSG00000045639.8|zinc finger protein 629
mm10_v2_chr10_-_4387436_4387479	0.0631696	Sox2	ENSMUST00000100077.3|Zbtb2|ENSMUSG00000075327.3|zinc finger and BTB domain containing 2
mm10_v2_chr14_-_7174533_7174533	0.062955	Sox2	ENSMUST00000172431.1|Gm3512|ENSMUSG00000090363.2|predicted gene 3512
mm10_v2_chr10_+_28668560_28668637	0.0624789	Sox2	ENSMUST00000161345.1|Themis|ENSMUSG00000049109.8|thymocyte selection associated
mm10_v2_chrX_+_162901226_162901261	0.0619709	Sox2	ENSMUST00000101095.2|Ctps2|ENSMUSG00000031360.8|cytidine 5'-triphosphate synthase 2
mm10_v2_chr13_+_43615710_43615788	0.0616828	Sox2	ENSMUST00000059986.2|Rnf182|ENSMUSG00000044164.2|ring finger protein 182
mm10_v2_chr16_-_64786321_64786321	0.0606213	Sox2	ENSMUST00000052588.4|Zfp654|ENSMUSG00000047141.4|zinc finger protein 654
mm10_v2_chr8_+_122376676_122376701	0.0604687	Sox2	ENSMUST00000176629.1|Zc3h18|ENSMUSG00000017478.9|zinc finger CCCH-type containing 18
mm10_v2_chr15_-_39943963_39944029	0.0604629	Sox2	ENSMUST00000110305.2|Lrp12|ENSMUSG00000022305.6|low density lipoprotein-related protein 12
mm10_v2_chr7_-_83550258_83550258	0.0603678	Sox2	ENSMUST00000177929.1|Gm10610|ENSMUSG00000094841.1|predicted gene 10610
mm10_v2_chr8_-_85365317_85365334	0.0603012	Sox2	ENSMUST00000034133.7|Mylk3|ENSMUSG00000031698.8|myosin light chain kinase 3
mm10_v2_chr4_+_112232245_112232274	0.0600358	Sox2	ENSMUST00000038455.5|Skint3|ENSMUSG00000070868.5|selection and upkeep of intraepithelial T cells 3 	ENSMUST00000170945.1|Skint3|ENSMUSG00000070868.5|selection and upkeep of intraepithelial T cells 3
mm10_v2_chr2_-_7396192_7396241	0.0598609	Sox2	ENSMUST00000137733.2|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr6_-_144209448_144209469	0.0595762	Sox2	ENSMUST00000077160.5|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr1_+_153900572_153900606	0.0595506	Sox2	ENSMUST00000139476.1|Glul|ENSMUSG00000026473.9|glutamate-ammonia ligase (glutamine synthetase)
mm10_v2_chr2_-_168206875_168206922	0.0591051	Sox2	ENSMUST00000057793.4|Adnp|ENSMUSG00000051149.9|activity-dependent neuroprotective protein
mm10_v2_chr19_+_5041337_5041416	0.0587399	Sox2	ENSMUST00000116567.2|Brms1|ENSMUSG00000080268.3|breast cancer metastasis-suppressor 1
mm10_v2_chr4_-_115781012_115781023	0.0586216	Sox2	ENSMUST00000106521.1|Tex38|ENSMUSG00000044556.3|testis expressed 38
mm10_v2_chr8_+_3470841_3470862	0.0585991	Sox2	ENSMUST00000047265.6|1700019B03Rik|ENSMUSG00000040340.7|RIKEN cDNA 1700019B03 gene
mm10_v2_chr6_-_35326123_35326155	0.0582709	Sox2	ENSMUST00000051176.7|Fam180a|ENSMUSG00000047420.7|family with sequence similarity 180, member A
mm10_v2_chr9_+_118478851_118478866	0.057427	Sox2	ENSMUST00000150633.1|Eomes|ENSMUSG00000032446.8|eomesodermin homolog (Xenopus laevis)
mm10_v2_chrX_+_139086226_139086250	0.0573205	Sox2	ENSMUST00000033625.1|4930513O06Rik|ENSMUSG00000031270.1|RIKEN cDNA 4930513O06 gene
mm10_v2_chr7_+_73375494_73375549	0.0569443	Sox2	ENSMUST00000094312.5|Rgma|ENSMUSG00000070509.9|RGM domain family, member A 	ENSMUST00000119206.1|Rgma|ENSMUSG00000070509.9|RGM domain family, member A
mm10_v2_chr17_-_46890405_46890405	0.0564506	Sox2	ENSMUST00000086675.3|A330017A19Rik|ENSMUSG00000073388.2|RIKEN cDNA A330017A19 gene
mm10_v2_chr8_-_40634750_40634775	0.056444	Sox2	ENSMUST00000173957.1|Mtmr7|ENSMUSG00000039431.10|myotubularin related protein 7
mm10_v2_chr7_-_43489967_43490075	0.0563522	Sox2	ENSMUST00000107974.1|Iglon5|ENSMUSG00000013367.4|IgLON family member 5
mm10_v2_chrX_+_112600526_112600526	0.0563457	Sox2	ENSMUST00000113409.1|Zfp711|ENSMUSG00000025529.8|zinc finger protein 711
mm10_v2_chr15_+_27466647_27466696	0.056086	Sox2	ENSMUST00000022875.6|Ank|ENSMUSG00000022265.6|progressive ankylosis
mm10_v2_chrX_-_75161620_75161620	0.0558693	Sox2	ENSMUST00000165080.1|Smim9|ENSMUSG00000073094.3|small integral membrane protein 9
mm10_v2_chr2_+_68861433_68861510	0.0555914	Sox2	ENSMUST00000028426.2|Cers6|ENSMUSG00000027035.4|ceramide synthase 6
mm10_v2_chr9_+_102720287_102720336	0.0554883	Sox2	ENSMUST00000130602.1|Amotl2|ENSMUSG00000032531.9|angiomotin-like 2
mm10_v2_chr9_+_70542872_70542920	0.0548104	Sox2	ENSMUST00000049263.7|Sltm|ENSMUSG00000032212.9|SAFB-like, transcription modulator
mm10_v2_chr9_-_112187766_112187862	0.0544441	Sox2	ENSMUST00000111872.2|Arpp21|ENSMUSG00000032503.11|cyclic AMP-regulated phosphoprotein, 21 	ENSMUST00000164754.2|Arpp21|ENSMUSG00000032503.11|cyclic AMP-regulated phosphoprotein, 21
mm10_v2_chr2_-_26910569_26910677	0.0536909	Sox2	ENSMUST00000015920.5|Med22|ENSMUSG00000015776.6|mediator complex subunit 22 	ENSMUST00000139815.1|Med22|ENSMUSG00000015776.6|mediator complex subunit 22 	ENSMUST00000102899.3|Med22|ENSMUSG00000015776.6|mediator complex subunit 22
mm10_v2_chr14_+_26638074_26638151	0.0536329	Sox2	ENSMUST00000022429.2|Arf4|ENSMUSG00000021877.5|ADP-ribosylation factor 4
mm10_v2_chr6_+_51432663_51432674	0.0534324	Sox2	ENSMUST00000005103.5|Nfe2l3|ENSMUSG00000029832.10|nuclear factor, erythroid derived 2, like 3
mm10_v2_chr10_-_57532416_57532487	0.0529954	Sox2	ENSMUST00000169122.1|Serinc1|ENSMUSG00000019877.4|serine incorporator 1
mm10_v2_chr10_+_23960494_23960494	0.0527868	Sox2	ENSMUST00000092660.1|Taar4|ENSMUSG00000069707.1|trace amine-associated receptor 4
mm10_v2_chr18_+_64340225_64340364	0.0518291	Sox2	ENSMUST00000175965.2|Onecut2|ENSMUSG00000045991.12|one cut domain, family member 2 	ENSMUST00000115145.3|Onecut2|ENSMUSG00000045991.12|one cut domain, family member 2
mm10_v2_chr13_-_102906046_102906111	0.0514039	Sox2	ENSMUST00000171791.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr6_-_66559708_66559708	0.0510614	Sox2	ENSMUST00000079584.1|Vmn1r32|ENSMUSG00000062905.1|vomeronasal 1 receptor 32
mm10_v2_chr7_+_46240956_46240987	0.0510607	Sox2	ENSMUST00000164538.1|Otog|ENSMUSG00000009487.9|otogelin
mm10_v2_chr9_-_79718720_79718752	0.0498531	Sox2	ENSMUST00000121227.1|Col12a1|ENSMUSG00000032332.11|collagen, type XII, alpha 1
mm10_v2_chr5_-_140830430_140830453	0.0494515	Sox2	ENSMUST00000000153.4|Gna12|ENSMUSG00000000149.6|guanine nucleotide binding protein, alpha 12
mm10_v2_chr10_+_42860648_42860676	0.0494151	Sox2	ENSMUST00000105495.1|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr7_-_28598140_28598185	0.0491786	Sox2	ENSMUST00000040531.8|Samd4b|ENSMUSG00000037513.9|sterile alpha motif domain containing 4B 	ENSMUST00000108283.1|Pak4|ENSMUSG00000030602.6|p21 protein (Cdc42/Rac)-activated kinase 4
mm10_v2_chr7_-_45204892_45204892	0.0490334	Sox2	ENSMUST00000121017.2|Ccdc155|ENSMUSG00000038292.12|coiled-coil domain containing 155
mm10_v2_chr5_+_124862674_124862771	0.0489971	Sox2	ENSMUST00000111417.2|Zfp664|ENSMUSG00000079215.2|zinc finger protein 664
mm10_v2_chr2_-_26208281_26208293	0.0486136	Sox2	ENSMUST00000054099.9|Lhx3|ENSMUSG00000026934.9|LIM homeobox protein 3
mm10_v2_chr1_-_55027473_55027484	0.0482226	Sox2	ENSMUST00000027127.7|Sf3b1|ENSMUSG00000025982.7|splicing factor 3b, subunit 1
mm10_v2_chr4_-_81442756_81442836	0.0479533	Sox2	ENSMUST00000107262.1|Mpdz|ENSMUSG00000028402.11|multiple PDZ domain protein 	ENSMUST00000102830.3|Mpdz|ENSMUSG00000028402.11|multiple PDZ domain protein
mm10_v2_chr7_-_118705708_118705786	0.0472606	Sox2	ENSMUST00000038791.8|Gde1|ENSMUSG00000033917.8|glycerophosphodiester phosphodiesterase 1
mm10_v2_chr11_-_20332689_20332774	0.0471128	Sox2	ENSMUST00000109594.1|Slc1a4|ENSMUSG00000020142.6|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
mm10_v2_chr4_-_83021102_83021135	0.0468392	Sox2	ENSMUST00000071708.5|Frem1|ENSMUSG00000059049.8|Fras1 related extracellular matrix protein 1
mm10_v2_chr6_+_122513676_122513688	0.0468091	Sox2	ENSMUST00000142896.1|Mfap5|ENSMUSG00000030116.8|microfibrillar associated protein 5 	ENSMUST00000121656.1|Mfap5|ENSMUSG00000030116.8|microfibrillar associated protein 5
mm10_v2_chr7_-_98361275_98361295	0.0452495	Sox2	ENSMUST00000094161.4|Tsku|ENSMUSG00000049580.6|tsukushi 	ENSMUST00000164726.1|Tsku|ENSMUSG00000049580.6|tsukushi 	ENSMUST00000167405.1|Tsku|ENSMUSG00000049580.6|tsukushi
mm10_v2_chr2_-_39190687_39190746	0.0451163	Sox2	ENSMUST00000142872.1|Scai|ENSMUSG00000035236.11|suppressor of cancer cell invasion 	ENSMUST00000038874.5|Scai|ENSMUSG00000035236.11|suppressor of cancer cell invasion
mm10_v2_chr4_+_32238950_32238964	0.045094	Sox2	ENSMUST00000037416.6|Bach2|ENSMUSG00000040270.10|BTB and CNC homology 2
mm10_v2_chr15_-_73423180_73423218	0.0444591	Sox2	ENSMUST00000110036.2|Ptk2|ENSMUSG00000022607.8|PTK2 protein tyrosine kinase 2 	ENSMUST00000170939.1|Ptk2|ENSMUSG00000022607.8|PTK2 protein tyrosine kinase 2
mm10_v2_chr7_-_111082997_111083037	0.0443148	Sox2	ENSMUST00000161051.1|Eif4g2|ENSMUSG00000005610.10|eukaryotic translation initiation factor 4, gamma 2 	ENSMUST00000160132.1|Eif4g2|ENSMUSG00000005610.10|eukaryotic translation initiation factor 4, gamma 2 	ENSMUST00000106666.3|Eif4g2|ENSMUSG00000005610.10|eukaryotic translation initiation factor 4, gamma 2 	ENSMUST00000162415.1|Eif4g2|ENSMUSG00000005610.10|eukaryotic translation initiation factor 4, gamma 2
mm10_v2_chr2_+_102706356_102706438	0.0429549	Sox2	ENSMUST00000123759.1|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2 	ENSMUST00000111212.1|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2 	ENSMUST00000005220.4|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm10_v2_chr10_-_80421847_80421876	0.0414649	Sox2	ENSMUST00000156244.1|Tcf3|ENSMUSG00000020167.8|transcription factor 3
mm10_v2_chr1_-_79761752_79761774	0.0400382	Sox2	ENSMUST00000113512.1|Wdfy1|ENSMUSG00000073643.5|WD repeat and FYVE domain containing 1 	ENSMUST00000113513.1|Wdfy1|ENSMUSG00000073643.5|WD repeat and FYVE domain containing 1 	ENSMUST00000113515.1|Wdfy1|ENSMUSG00000073643.5|WD repeat and FYVE domain containing 1 	ENSMUST00000113514.1|Wdfy1|ENSMUSG00000073643.5|WD repeat and FYVE domain containing 1 	ENSMUST00000113510.1|Wdfy1|ENSMUSG00000073643.5|WD repeat and FYVE domain containing 1 	ENSMUST00000113511.1|Wdfy1|ENSMUSG00000073643.5|WD repeat and FYVE domain containing 1 	ENSMUST00000048820.7|Wdfy1|ENSMUSG00000073643.5|WD repeat and FYVE domain containing 1
mm10_v2_chr5_-_124352233_124352302	0.0400027	Sox2	ENSMUST00000111472.1|Cdk2ap1|ENSMUSG00000029394.5|CDK2 (cyclin-dependent kinase 2)-associated protein 1
mm10_v2_chr9_-_105495475_105495489	0.0399805	Sox2	ENSMUST00000176036.1|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering
mm10_v2_chrX_-_140543177_140543195	0.0396302	Sox2	ENSMUST00000055738.5|Tsc22d3|ENSMUSG00000031431.7|TSC22 domain family, member 3
mm10_v2_chr11_+_58786139_58786139	0.0388998	Sox2	ENSMUST00000076393.3|Olfr314|ENSMUSG00000059504.3|olfactory receptor 314
mm10_v2_chr11_-_116168138_116168205	0.0386695	Sox2	ENSMUST00000139020.1|Fbf1|ENSMUSG00000020776.12|Fas (TNFRSF6) binding factor 1 	ENSMUST00000103031.1|Fbf1|ENSMUSG00000020776.12|Fas (TNFRSF6) binding factor 1 	ENSMUST00000124828.1|Fbf1|ENSMUSG00000020776.12|Fas (TNFRSF6) binding factor 1
mm10_v2_chr2_-_168767136_168767201	0.0383313	Sox2	ENSMUST00000029061.5|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila) 	ENSMUST00000103074.1|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila)
mm10_v2_chr10_+_37139558_37139558	0.0376654	Sox2	ENSMUST00000062667.3|5930403N24Rik|ENSMUSG00000046463.3|RIKEN cDNA 5930403N24 gene
mm10_v2_chr3_+_7503423_7503503	0.0375188	Sox2	ENSMUST00000051064.3|Zc2hc1a|ENSMUSG00000043542.7|zinc finger, C2HC-type containing 1A
mm10_v2_chr9_+_54863742_54863801	0.0374537	Sox2	ENSMUST00000034843.7|Ireb2|ENSMUSG00000032293.7|iron responsive element binding protein 2
mm10_v2_chr16_+_19760902_19761054	0.0373481	Sox2	ENSMUST00000119468.1|B3gnt5|ENSMUSG00000022686.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
mm10_v2_chr2_+_163658370_163658510	0.0371764	Sox2	ENSMUST00000164399.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000064703.6|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000099105.2|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000152418.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000126182.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000131228.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma
mm10_v2_chr10_+_40349265_40349387	0.0366771	Sox2	ENSMUST00000044672.4|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19 	ENSMUST00000095743.2|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19
mm10_v2_chr7_-_142095266_142095306	0.0364769	Sox2	ENSMUST00000039926.3|Dusp8|ENSMUSG00000037887.5|dual specificity phosphatase 8
mm10_v2_chr17_+_37002610_37002670	0.0363951	Sox2	ENSMUST00000173921.1|Zfp57|ENSMUSG00000036036.9|zinc finger protein 57 	ENSMUST00000172580.1|Zfp57|ENSMUSG00000036036.9|zinc finger protein 57
mm10_v2_chr11_+_54303798_54303844	0.0357116	Sox2	ENSMUST00000093106.5|Acsl6|ENSMUSG00000020333.11|acyl-CoA synthetase long-chain family member 6
mm10_v2_chr5_+_143817786_143817818	0.0354057	Sox2	ENSMUST00000100487.4|Eif2ak1|ENSMUSG00000029613.9|eukaryotic translation initiation factor 2 alpha kinase 1
mm10_v2_chr1_-_44118757_44118816	0.0352457	Sox2	ENSMUST00000027213.7|Kdelc1|ENSMUSG00000026047.7|KDEL (Lys-Asp-Glu-Leu) containing 1 	ENSMUST00000065767.2|Kdelc1|ENSMUSG00000026047.7|KDEL (Lys-Asp-Glu-Leu) containing 1
mm10_v2_chr18_+_76241892_76242046	0.0349237	Sox2	ENSMUST00000171256.1|Smad2|ENSMUSG00000024563.9|SMAD family member 2
mm10_v2_chr9_-_107710475_107710475	0.0348435	Sox2	ENSMUST00000080560.3|Sema3f|ENSMUSG00000034684.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
mm10_v2_chr2_+_156721037_156721062	0.0345993	Sox2	ENSMUST00000109566.2|Dlgap4|ENSMUSG00000061689.9|discs, large homolog-associated protein 4 (Drosophila) 	ENSMUST00000146412.2|Dlgap4|ENSMUSG00000061689.9|discs, large homolog-associated protein 4 (Drosophila) 	ENSMUST00000177013.1|Dlgap4|ENSMUSG00000061689.9|discs, large homolog-associated protein 4 (Drosophila) 	ENSMUST00000171030.2|Dlgap4|ENSMUSG00000061689.9|discs, large homolog-associated protein 4 (Drosophila)
mm10_v2_chr8_-_123515333_123515437	0.0344907	Sox2	ENSMUST00000177240.1|Dbndd1|ENSMUSG00000031970.10|dysbindin (dystrobrevin binding protein 1) domain containing 1
mm10_v2_chr5_-_142906702_142906754	0.0335853	Sox2	ENSMUST00000167721.1|Actb|ENSMUSG00000029580.8|actin, beta 	ENSMUST00000163829.1|Actb|ENSMUSG00000029580.8|actin, beta 	ENSMUST00000100497.4|Actb|ENSMUSG00000029580.8|actin, beta
mm10_v2_chr2_+_172472512_172472535	0.0333912	Sox2	ENSMUST00000029007.2|Fam209|ENSMUSG00000027505.2|family with sequence similarity 209
mm10_v2_chr12_-_87287137_87287137	0.0333441	Sox2	ENSMUST00000051601.5|Ism2|ENSMUSG00000050671.6|isthmin 2 homolog (zebrafish)
mm10_v2_chr7_-_123369870_123369920	0.0328091	Sox2	ENSMUST00000106442.2|Arhgap17|ENSMUSG00000030766.9|Rho GTPase activating protein 17 	ENSMUST00000098060.3|Arhgap17|ENSMUSG00000030766.9|Rho GTPase activating protein 17 	ENSMUST00000167309.1|Arhgap17|ENSMUSG00000030766.9|Rho GTPase activating protein 17
mm10_v2_chr18_+_82475133_82475162	0.032762	Sox2	ENSMUST00000091789.4|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000114676.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000047865.7|Mbp|ENSMUSG00000041607.10|myelin basic protein
mm10_v2_chr6_-_99266494_99266540	0.0325014	Sox2	ENSMUST00000113326.2|Foxp1|ENSMUSG00000030067.11|forkhead box P1
mm10_v2_chr6_+_71293765_71293765	0.0323794	Sox2	ENSMUST00000114185.2|Gm1070|ENSMUSG00000073018.4|predicted gene 1070
mm10_v2_chr11_+_116918844_116918888	0.0321444	Sox2	ENSMUST00000103027.3|Mgat5b|ENSMUSG00000043857.10|mannoside acetylglucosaminyltransferase 5, isoenzyme B
mm10_v2_chr8_+_45628176_45628219	0.0320487	Sox2	ENSMUST00000130850.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chrX_+_114474312_114474353	0.0315887	Sox2	ENSMUST00000113371.1|Klhl4|ENSMUSG00000025597.7|kelch-like 4 	ENSMUST00000040504.5|Klhl4|ENSMUSG00000025597.7|kelch-like 4
mm10_v2_chr1_-_153900198_153900210	0.0315718	Sox2	ENSMUST00000123490.1|5830403L16Rik|ENSMUSG00000045968.6|RIKEN cDNA 5830403L16 gene
mm10_v2_chr3_+_88615367_88615434	0.0309505	Sox2	ENSMUST00000176539.1|Arhgef2|ENSMUSG00000028059.8|rho/rac guanine nucleotide exchange factor (GEF) 2
mm10_v2_chr18_-_88894322_88894371	0.0308524	Sox2	ENSMUST00000070116.5|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6 	ENSMUST00000125362.1|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6
mm10_v2_chr4_-_129696579_129696620	0.030407	Sox2	ENSMUST00000137640.1|Tmem39b|ENSMUSG00000053730.9|transmembrane protein 39b
mm10_v2_chr1_-_160212864_160212892	0.0299496	Sox2	ENSMUST00000014370.5|Cacybp|ENSMUSG00000014226.5|calcyclin binding protein
mm10_v2_chr1_-_135105210_135105276	0.0299036	Sox2	ENSMUST00000044828.7|Lgr6|ENSMUSG00000042793.7|leucine-rich repeat-containing G protein-coupled receptor 6
mm10_v2_chr7_-_98361310_98361328	0.0296516	Sox2	ENSMUST00000165257.1|Tsku|ENSMUSG00000049580.6|tsukushi
mm10_v2_chr1_+_9798123_9798216	0.029245	Sox2	ENSMUST00000168907.1|Sgk3|ENSMUSG00000025915.8|serum/glucocorticoid regulated kinase 3 	ENSMUST00000166384.1|Sgk3|ENSMUSG00000025915.8|serum/glucocorticoid regulated kinase 3
mm10_v2_chr19_-_46962301_46962351	0.0291975	Sox2	ENSMUST00000168536.1|Nt5c2|ENSMUSG00000025041.10|5'-nucleotidase, cytosolic II
mm10_v2_chr9_+_50768228_50768271	0.0290736	Sox2	ENSMUST00000042391.6|Fdxacb1|ENSMUSG00000037845.8|ferredoxin-fold anticodon binding domain containing 1
mm10_v2_chr14_+_79515618_79515694	0.0290638	Sox2	ENSMUST00000110835.1|Elf1|ENSMUSG00000036461.9|E74-like factor 1
mm10_v2_chr14_-_5880382_5880382	0.0285617	Sox2	ENSMUST00000164484.1|Gm8237|ENSMUSG00000090707.2|predicted gene 8237
mm10_v2_chr16_-_23029062_23029076	0.0284875	Sox2	ENSMUST00000115349.2|Kng2|ENSMUSG00000060459.7|kininogen 2
mm10_v2_chr11_-_100207507_100207548	0.0282703	Sox2	ENSMUST00000007272.7|Krt14|ENSMUSG00000045545.8|keratin 14
mm10_v2_chr10_+_69925800_69925824	0.0278346	Sox2	ENSMUST00000182029.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr10_-_116896879_116896956	0.0278327	Sox2	ENSMUST00000048229.7|Myrfl|ENSMUSG00000034057.7|myelin regulatory factor-like
mm10_v2_chr9_-_57765845_57765876	0.0272146	Sox2	ENSMUST00000065330.6|Clk3|ENSMUSG00000032316.7|CDC-like kinase 3
mm10_v2_chr9_-_51963533_51963563	0.0271998	Sox2	ENSMUST00000034552.6|Fdx1|ENSMUSG00000032051.8|ferredoxin 1
mm10_v2_chr6_-_42693030_42693070	0.026987	Sox2	ENSMUST00000045140.4|Fam115a|ENSMUSG00000036667.8|family with sequence similarity 115, member A
mm10_v2_chr7_-_135528645_135528661	0.0269702	Sox2	ENSMUST00000053716.7|Clrn3|ENSMUSG00000050866.7|clarin 3
mm10_v2_chr8_-_40634776_40634806	0.026883	Sox2	ENSMUST00000048898.10|Mtmr7|ENSMUSG00000039431.10|myotubularin related protein 7 	ENSMUST00000174205.1|Mtmr7|ENSMUSG00000039431.10|myotubularin related protein 7
mm10_v2_chr13_+_83504032_83504050	0.0268647	Sox2	ENSMUST00000163888.1|Mef2c|ENSMUSG00000005583.10|myocyte enhancer factor 2C 	ENSMUST00000005722.7|Mef2c|ENSMUSG00000005583.10|myocyte enhancer factor 2C
mm10_v2_chr9_-_107872821_107872844	0.0268381	Sox2	ENSMUST00000183032.1|Rbm6|ENSMUSG00000032582.8|RNA binding motif protein 6
mm10_v2_chr14_-_54994541_54994634	0.026758	Sox2	ENSMUST00000153783.1|Myh7|ENSMUSG00000053093.9|myosin, heavy polypeptide 7, cardiac muscle, beta 	ENSMUST00000168485.1|Myh7|ENSMUSG00000053093.9|myosin, heavy polypeptide 7, cardiac muscle, beta 	ENSMUST00000102803.3|Myh7|ENSMUSG00000053093.9|myosin, heavy polypeptide 7, cardiac muscle, beta
mm10_v2_chr15_+_34082664_34082734	0.0267473	Sox2	ENSMUST00000022865.9|Mtdh|ENSMUSG00000022255.9|metadherin
mm10_v2_chr14_-_15438974_15439002	0.0267027	Sox2	ENSMUST00000055211.4|Lrrc3b|ENSMUSG00000045201.5|leucine rich repeat containing 3B
mm10_v2_chr4_-_126468580_126468653	0.0265999	Sox2	ENSMUST00000097888.3|Ago1|ENSMUSG00000041530.10|argonaute RISC catalytic subunit 1
mm10_v2_chr11_+_105181793_105181982	0.0264316	Sox2	ENSMUST00000092537.3|Tlk2|ENSMUSG00000020694.10|tousled-like kinase 2 (Arabidopsis) 	ENSMUST00000015107.6|Tlk2|ENSMUSG00000020694.10|tousled-like kinase 2 (Arabidopsis) 	ENSMUST00000145048.1|Tlk2|ENSMUSG00000020694.10|tousled-like kinase 2 (Arabidopsis)
mm10_v2_chr3_+_153973436_153973520	0.0260452	Sox2	ENSMUST00000089948.5|Slc44a5|ENSMUSG00000028360.9|solute carrier family 44, member 5
mm10_v2_chr2_-_79908389_79908403	0.0258704	Sox2	ENSMUST00000090756.4|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent
mm10_v2_chr6_-_39419967_39420074	0.0257744	Sox2	ENSMUST00000122996.1|Mkrn1|ENSMUSG00000029922.9|makorin, ring finger protein, 1
mm10_v2_chr10_+_116301374_116301428	0.0255565	Sox2	ENSMUST00000092167.5|Ptprb|ENSMUSG00000020154.9|protein tyrosine phosphatase, receptor type, B
mm10_v2_chr16_+_45094036_45094053	0.0255025	Sox2	ENSMUST00000061050.5|Ccdc80|ENSMUSG00000022665.8|coiled-coil domain containing 80
mm10_v2_chr17_+_35241746_35241778	0.0252484	Sox2	ENSMUST00000068056.5|Ddx39b|ENSMUSG00000019432.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B 	ENSMUST00000174757.1|Ddx39b|ENSMUSG00000019432.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
mm10_v2_chr12_+_86361112_86361131	0.0247423	Sox2	ENSMUST00000116402.3|Esrrb|ENSMUSG00000021255.11|estrogen related receptor, beta
mm10_v2_chr9_+_51621425_51621425	0.0247078	Sox2	ENSMUST00000089534.4|Gm7293|ENSMUSG00000078308.1|predicted gene 7293
mm10_v2_chr1_+_180330470_180330493	0.0245932	Sox2	ENSMUST00000070181.6|Itpkb|ENSMUSG00000038855.9|inositol 1,4,5-trisphosphate 3-kinase B
mm10_v2_chr2_-_119229849_119229877	0.0242672	Sox2	ENSMUST00000110820.2|Ppp1r14d|ENSMUSG00000027317.8|protein phosphatase 1, regulatory (inhibitor) subunit 14D
mm10_v2_chr4_-_154928545_154928571	0.0238606	Sox2	ENSMUST00000152687.1|Tnfrsf14|ENSMUSG00000042333.8|tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)
mm10_v2_chr8_+_122376609_122376652	0.0238478	Sox2	ENSMUST00000017622.5|Zc3h18|ENSMUSG00000017478.9|zinc finger CCCH-type containing 18 	ENSMUST00000093073.5|Zc3h18|ENSMUSG00000017478.9|zinc finger CCCH-type containing 18 	ENSMUST00000176699.1|Zc3h18|ENSMUSG00000017478.9|zinc finger CCCH-type containing 18
mm10_v2_chr6_-_29380513_29380520	0.0236356	Sox2	ENSMUST00000080428.6|Opn1sw|ENSMUSG00000058831.7|opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)
mm10_v2_chr10_+_106470281_106470367	0.0233605	Sox2	ENSMUST00000029404.9|Ppfia2|ENSMUSG00000053825.8|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENSMUST00000169303.1|Ppfia2|ENSMUSG00000053825.8|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
mm10_v2_chr3_-_89365233_89365253	0.0226877	Sox2	ENSMUST00000070820.6|Dcst1|ENSMUSG00000042672.9|DC-STAMP domain containing 1
mm10_v2_chr4_+_57434247_57434368	0.0225887	Sox2	ENSMUST00000102905.1|Palm2|ENSMUSG00000090053.3|paralemmin 2
mm10_v2_chr7_+_104329471_104329471	0.02245	Sox2	ENSMUST00000180136.1|Trim34b|ENSMUSG00000090215.2|tripartite motif-containing 34B 	ENSMUST00000178316.1|Trim34b|ENSMUSG00000090215.2|tripartite motif-containing 34B
mm10_v2_chr10_+_23851454_23851489	0.0223875	Sox2	ENSMUST00000020190.7|Vnn3|ENSMUSG00000020010.7|vanin 3
mm10_v2_chr16_+_94370618_94370784	0.0221659	Sox2	ENSMUST00000117648.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000147352.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000150346.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000155692.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000153988.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000141856.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000152117.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000150097.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000122895.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000151770.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3
mm10_v2_chr19_-_47692042_47692094	0.021659	Sox2	ENSMUST00000026045.7|Col17a1|ENSMUSG00000025064.8|collagen, type XVII, alpha 1 	ENSMUST00000086923.5|Col17a1|ENSMUSG00000025064.8|collagen, type XVII, alpha 1
mm10_v2_chr13_+_42709482_42709581	0.0211273	Sox2	ENSMUST00000066928.5|Phactr1|ENSMUSG00000054728.10|phosphatase and actin regulator 1 	ENSMUST00000148891.1|Phactr1|ENSMUSG00000054728.10|phosphatase and actin regulator 1
mm10_v2_chr9_+_123767211_123767241	0.0209604	Sox2	ENSMUST00000166236.1|Ccr9|ENSMUSG00000029530.9|chemokine (C-C motif) receptor 9 	ENSMUST00000111454.2|Ccr9|ENSMUSG00000029530.9|chemokine (C-C motif) receptor 9 	ENSMUST00000168910.1|Ccr9|ENSMUSG00000029530.9|chemokine (C-C motif) receptor 9
mm10_v2_chr2_-_60881360_60881491	0.0207679	Sox2	ENSMUST00000164147.1|Rbms1|ENSMUSG00000026970.10|RNA binding motif, single stranded interacting protein 1 	ENSMUST00000112509.1|Rbms1|ENSMUSG00000026970.10|RNA binding motif, single stranded interacting protein 1
mm10_v2_chr10_+_56377300_56377338	0.020764	Sox2	ENSMUST00000068581.7|Gja1|ENSMUSG00000050953.9|gap junction protein, alpha 1
mm10_v2_chr8_-_11635745_11635765	0.0206603	Sox2	ENSMUST00000033905.5|Ankrd10|ENSMUSG00000031508.7|ankyrin repeat domain 10 	ENSMUST00000169782.1|Ankrd10|ENSMUSG00000031508.7|ankyrin repeat domain 10
mm10_v2_chr9_+_58134535_58134810	0.0204737	Sox2	ENSMUST00000128378.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6 	ENSMUST00000150820.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6 	ENSMUST00000167479.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6 	ENSMUST00000134450.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6
mm10_v2_chr5_+_118065360_118065360	0.0204037	Sox2	ENSMUST00000031305.3|Gm9754|ENSMUSG00000029360.3|predicted gene 9754
mm10_v2_chr11_-_76763550_76763582	0.0202016	Sox2	ENSMUST00000010536.8|Gosr1|ENSMUSG00000010392.8|golgi SNAP receptor complex member 1
mm10_v2_chr17_+_87282880_87282950	0.0197451	Sox2	ENSMUST00000041110.5|Ttc7|ENSMUSG00000036918.9|tetratricopeptide repeat domain 7 	ENSMUST00000125875.1|Ttc7|ENSMUSG00000036918.9|tetratricopeptide repeat domain 7
mm10_v2_chr4_+_40722912_40723001	0.019056	Sox2	ENSMUST00000164233.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1 	ENSMUST00000137246.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1 	ENSMUST00000125442.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1
mm10_v2_chr9_-_107872687_107872747	0.0189842	Sox2	ENSMUST00000035201.6|Rbm6|ENSMUSG00000032582.8|RNA binding motif protein 6
mm10_v2_chr2_+_49451486_49451559	0.0189478	Sox2	ENSMUST00000092123.4|Epc2|ENSMUSG00000069495.6|enhancer of polycomb homolog 2 (Drosophila)
mm10_v2_chr19_+_10634223_10634245	0.018874	Sox2	ENSMUST00000055115.7|Vwce|ENSMUSG00000043789.7|von Willebrand factor C and EGF domains
mm10_v2_chr5_+_74535535_74535558	0.0182995	Sox2	ENSMUST00000121950.1|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae)
mm10_v2_chr10_-_127341583_127341614	0.0173973	Sox2	ENSMUST00000026474.3|Gli1|ENSMUSG00000025407.6|GLI-Kruppel family member GLI1
mm10_v2_chr2_+_30078584_30078584	0.0172956	Sox2	ENSMUST00000045246.7|Pkn3|ENSMUSG00000026785.8|protein kinase N3
mm10_v2_chr12_+_8674129_8674150	0.0167633	Sox2	ENSMUST00000111123.2|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila) 	ENSMUST00000178015.1|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila) 	ENSMUST00000020915.3|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila)
mm10_v2_chr11_+_3289168_3289281	0.0166644	Sox2	ENSMUST00000134089.1|Patz1|ENSMUSG00000020453.11|POZ (BTB) and AT hook containing zinc finger 1
mm10_v2_chr7_+_102702331_102702331	0.0164328	Sox2	ENSMUST00000094124.3|Olfr558|ENSMUSG00000070423.3|olfactory receptor 558
mm10_v2_chr15_-_103255433_103255445	0.016197	Sox2	ENSMUST00000075192.6|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2
mm10_v2_chr5_+_115429944_115429997	0.0158015	Sox2	ENSMUST00000067168.5|Msi1|ENSMUSG00000054256.5|musashi RNA-binding protein 1
mm10_v2_chr1_-_36558214_36558266	0.0156969	Sox2	ENSMUST00000154493.1|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
mm10_v2_chr7_-_141429433_141429491	0.0156291	Sox2	ENSMUST00000124444.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1
mm10_v2_chr4_-_134012381_134012404	0.0151894	Sox2	ENSMUST00000176113.1|Lin28a|ENSMUSG00000050966.3|lin-28 homolog A (C. elegans)
mm10_v2_chr17_+_35059035_35059130	0.0150929	Sox2	ENSMUST00000007255.6|Ddah2|ENSMUSG00000007039.6|dimethylarginine dimethylaminohydrolase 2 	ENSMUST00000174493.1|Ddah2|ENSMUSG00000007039.6|dimethylarginine dimethylaminohydrolase 2
mm10_v2_chr7_+_28825202_28825217	0.0150419	Sox2	ENSMUST00000066264.6|Ech1|ENSMUSG00000053898.6|enoyl coenzyme A hydratase 1, peroxisomal
mm10_v2_chr1_-_33814591_33814600	0.0149864	Sox2	ENSMUST00000019861.6|Zfp451|ENSMUSG00000042197.7|zinc finger protein 451
mm10_v2_chr2_-_177925604_177925613	0.0149515	Sox2	ENSMUST00000108934.2|C330013J21Rik|ENSMUSG00000074529.4|RIKEN cDNA C330013J21 gene 	ENSMUST00000081529.4|C330013J21Rik|ENSMUSG00000074529.4|RIKEN cDNA C330013J21 gene
mm10_v2_chrX_+_162901762_162901870	0.0147633	Sox2	ENSMUST00000112302.1|Ctps2|ENSMUSG00000031360.8|cytidine 5'-triphosphate synthase 2 	ENSMUST00000112301.1|Ctps2|ENSMUSG00000031360.8|cytidine 5'-triphosphate synthase 2
mm10_v2_chr12_+_84641019_84641019	0.0147578	Sox2	ENSMUST00000166772.2|Vrtn|ENSMUSG00000071235.5|vertebrae development associated
mm10_v2_chr1_+_97770158_97770209	0.01448	Sox2	ENSMUST00000112844.3|Gin1|ENSMUSG00000026333.8|gypsy retrotransposon integrase 1 	ENSMUST00000112842.1|Gin1|ENSMUSG00000026333.8|gypsy retrotransposon integrase 1 	ENSMUST00000027571.6|Gin1|ENSMUSG00000026333.8|gypsy retrotransposon integrase 1
mm10_v2_chr3_+_142560108_142560145	0.0139209	Sox2	ENSMUST00000128609.1|Gbp3|ENSMUSG00000028268.8|guanylate binding protein 3 	ENSMUST00000029935.7|Gbp3|ENSMUSG00000028268.8|guanylate binding protein 3
mm10_v2_chr11_-_82890541_82890626	0.0137983	Sox2	ENSMUST00000092844.6|Rad51d|ENSMUSG00000018841.11|RAD51 homolog D 	ENSMUST00000021033.9|Rad51d|ENSMUSG00000018841.11|RAD51 homolog D 	ENSMUST00000018985.8|Rad51d|ENSMUSG00000018841.11|RAD51 homolog D
mm10_v2_chr5_-_114380459_114380487	0.0137406	Sox2	ENSMUST00000001125.5|Kctd10|ENSMUSG00000001098.9|potassium channel tetramerisation domain containing 10
mm10_v2_chr6_+_65671590_65671618	0.0132113	Sox2	ENSMUST00000054351.4|Ndnf|ENSMUSG00000049001.4|neuron-derived neurotrophic factor
mm10_v2_chr4_+_40723084_40723117	0.0122979	Sox2	ENSMUST00000149794.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1
mm10_v2_chr9_+_21616230_21616281	0.0120388	Sox2	ENSMUST00000174008.1|Smarca4|ENSMUSG00000032187.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm10_v2_chr3_+_142560052_142560105	0.0115098	Sox2	ENSMUST00000106222.2|Gbp3|ENSMUSG00000028268.8|guanylate binding protein 3
mm10_v2_chr9_+_45430293_45430379	0.0114425	Sox2	ENSMUST00000034592.8|Dscaml1|ENSMUSG00000032087.9|Down syndrome cell adhesion molecule like 1
mm10_v2_chr18_+_36793918_36793937	0.010263	Sox2	ENSMUST00000001419.8|Zmat2|ENSMUSG00000001383.8|zinc finger, matrin type 2
mm10_v2_chr3_-_95251049_95251118	0.0100964	Sox2	ENSMUST00000098871.4|Bnipl|ENSMUSG00000028115.10|BCL2/adenovirus E1B 19kD interacting protein like
mm10_v2_chr9_+_21616166_21616177	0.00984292	Sox2	ENSMUST00000034707.8|Smarca4|ENSMUSG00000032187.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 	ENSMUST00000098948.3|Smarca4|ENSMUSG00000032187.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm10_v2_chr14_+_26638237_26638347	0.00978616	Sox2	ENSMUST00000112318.3|Arf4|ENSMUSG00000021877.5|ADP-ribosylation factor 4
mm10_v2_chr2_+_25180737_25180764	0.00892144	Sox2	ENSMUST00000104999.2|Nrarp|ENSMUSG00000078202.2|Notch-regulated ankyrin repeat protein
mm10_v2_chr8_-_67974567_67974596	0.00868	Sox2	ENSMUST00000098696.3|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000038959.9|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000093469.4|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr5_-_142905816_142905832	0.00854833	Sox2	ENSMUST00000171419.1|Actb|ENSMUSG00000029580.8|actin, beta
mm10_v2_chr4_-_44167905_44167976	0.00852465	Sox2	ENSMUST00000102934.2|Rnf38|ENSMUSG00000035696.9|ring finger protein 38
mm10_v2_chr17_-_24886304_24886353	0.00849951	Sox2	ENSMUST00000044252.5|Nubp2|ENSMUSG00000039183.5|nucleotide binding protein 2
mm10_v2_chr1_+_9601163_9601256	0.00831928	Sox2	ENSMUST00000088666.3|3110035E14Rik|ENSMUSG00000067879.3|RIKEN cDNA 3110035E14 gene
mm10_v2_chr7_-_126475082_126475130	0.00809334	Sox2	ENSMUST00000032978.6|Sh2b1|ENSMUSG00000030733.9|SH2B adaptor protein 1
mm10_v2_chr5_+_88720855_88720876	0.00758632	Sox2	ENSMUST00000113229.1|Mob1b|ENSMUSG00000006262.9|MOB kinase activator 1B 	ENSMUST00000006424.7|Mob1b|ENSMUSG00000006262.9|MOB kinase activator 1B
mm10_v2_chr10_+_36974536_36974556	0.00755803	Sox2	ENSMUST00000019911.7|Hdac2|ENSMUSG00000019777.10|histone deacetylase 2
mm10_v2_chr7_-_25005895_25005937	0.00736626	Sox2	ENSMUST00000102858.3|Atp1a3|ENSMUSG00000040907.9|ATPase, Na+/K+ transporting, alpha 3 polypeptide 	ENSMUST00000080882.6|Atp1a3|ENSMUSG00000040907.9|ATPase, Na+/K+ transporting, alpha 3 polypeptide
mm10_v2_chr12_+_71309876_71309984	0.00730118	Sox2	ENSMUST00000061273.5|Dact1|ENSMUSG00000044548.5|dapper homolog 1, antagonist of beta-catenin (xenopus) 	ENSMUST00000150639.1|Dact1|ENSMUSG00000044548.5|dapper homolog 1, antagonist of beta-catenin (xenopus)
mm10_v2_chr3_-_69127098_69127113	0.00717059	Sox2	ENSMUST00000029353.2|Kpna4|ENSMUSG00000027782.4|karyopherin (importin) alpha 4
mm10_v2_chr11_-_116454347_116454347	0.00628164	Sox2	ENSMUST00000093909.4|Qrich2|ENSMUSG00000070331.7|glutamine rich 2
mm10_v2_chr1_+_81077204_81077252	0.00627948	Sox2	ENSMUST00000123720.1|Nyap2|ENSMUSG00000054976.8|neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2
mm10_v2_chrX_+_18162575_18162657	0.00623184	Sox2	ENSMUST00000044484.6|Kdm6a|ENSMUSG00000037369.10|lysine (K)-specific demethylase 6A 	ENSMUST00000052368.8|Kdm6a|ENSMUSG00000037369.10|lysine (K)-specific demethylase 6A
mm10_v2_chr1_+_135836380_135836396	0.00613488	Sox2	ENSMUST00000178204.1|Tnnt2|ENSMUSG00000026414.7|troponin T2, cardiac
mm10_v2_chr11_-_116024489_116024511	0.00606413	Sox2	ENSMUST00000016703.7|H3f3b|ENSMUSG00000016559.8|H3 histone, family 3B
mm10_v2_chr4_-_137118135_137118165	0.00569741	Sox2	ENSMUST00000154285.1|Gm13001|ENSMUSG00000087417.1|predicted gene 13001
mm10_v2_chr2_-_140671440_140671458	0.00563482	Sox2	ENSMUST00000099301.1|Flrt3|ENSMUSG00000079021.1|fibronectin leucine rich transmembrane protein 3
mm10_v2_chr16_-_91044473_91044543	0.00538283	Sox2	ENSMUST00000118522.1|Paxbp1|ENSMUSG00000022974.6|PAX3 and PAX7 binding protein 1
mm10_v2_chr11_-_121229095_121229292	0.00506441	Sox2	ENSMUST00000137299.1|BC017643|ENSMUSG00000039294.8|cDNA sequence BC017643 	ENSMUST00000169393.1|BC017643|ENSMUSG00000039294.8|cDNA sequence BC017643
mm10_v2_chr18_+_37264998_37264998	0.00494676	Sox2	ENSMUST00000052366.3|Pcdhb1|ENSMUSG00000051663.3|protocadherin beta 1
mm10_v2_chr5_+_114004781_114004809	0.00478036	Sox2	ENSMUST00000161610.1|Dao|ENSMUSG00000042096.9|D-amino acid oxidase
mm10_v2_chr6_+_48613180_48613180	0.00472735	Sox2	ENSMUST00000061720.4|Zfp775|ENSMUSG00000007216.4|zinc finger protein 775
mm10_v2_chr3_-_98457031_98457031	0.00421104	Sox2	ENSMUST00000167753.1|Gm4450|ENSMUSG00000090817.1|predicted gene 4450
mm10_v2_chr9_-_110989611_110989728	0.00390204	Sox2	ENSMUST00000084922.5|Rtp3|ENSMUSG00000066319.5|receptor transporter protein 3
mm10_v2_chr10_+_128303322_128303352	0.00388667	Sox2	ENSMUST00000005825.6|Pan2|ENSMUSG00000005682.8|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)
mm10_v2_chr5_+_42067960_42067960	0.00380625	Sox2	ENSMUST00000087332.4|Gm16223|ENSMUSG00000067285.4|predicted gene 16223
mm10_v2_chr11_+_31965542_31965597	0.00363688	Sox2	ENSMUST00000102829.3|4930524B15Rik|ENSMUSG00000020299.6|RIKEN cDNA 4930524B15 gene
mm10_v2_chr1_-_93101825_93101849	0.00314829	Sox2	ENSMUST00000112958.2|Kif1a|ENSMUSG00000014602.9|kinesin family member 1A
mm10_v2_chr16_+_17451981_17452034	0.00253678	Sox2	ENSMUST00000006293.3|Crkl|ENSMUSG00000006134.3|v-crk sarcoma virus CT10 oncogene homolog (avian)-like
mm10_v2_chr14_-_70766598_70766644	0.00252285	Sox2	ENSMUST00000167242.1|Xpo7|ENSMUSG00000022100.7|exportin 7 	ENSMUST00000022696.6|Xpo7|ENSMUSG00000022100.7|exportin 7
mm10_v2_chr19_+_7417586_7417650	0.00233854	Sox2	ENSMUST00000159348.1|2700081O15Rik|ENSMUSG00000053080.9|RIKEN cDNA 2700081O15 gene
mm10_v2_chr12_-_45074112_45074306	0.00224554	Sox2	ENSMUST00000120531.1|Stxbp6|ENSMUSG00000046314.9|syntaxin binding protein 6 (amisyn) 	ENSMUST00000143376.1|Stxbp6|ENSMUSG00000046314.9|syntaxin binding protein 6 (amisyn)
mm10_v2_chr16_-_97851796_97851853	0.00199108	Sox2	ENSMUST00000121584.1|Prdm15|ENSMUSG00000014039.11|PR domain containing 15
mm10_v2_chr12_+_52516077_52516077	0.00157594	Sox2	ENSMUST00000110725.1|Arhgap5|ENSMUSG00000035133.8|Rho GTPase activating protein 5
mm10_v2_chr2_+_14388316_14388420	0.00155668	Sox2	ENSMUST00000114731.1|Slc39a12|ENSMUSG00000036949.10|solute carrier family 39 (zinc transporter), member 12 	ENSMUST00000082290.7|Slc39a12|ENSMUSG00000036949.10|solute carrier family 39 (zinc transporter), member 12
mm10_v2_chr9_+_102718424_102718490	0.00135124	Sox2	ENSMUST00000156485.1|Amotl2|ENSMUSG00000032531.9|angiomotin-like 2 	ENSMUST00000145937.1|Amotl2|ENSMUSG00000032531.9|angiomotin-like 2 	ENSMUST00000134483.1|Amotl2|ENSMUSG00000032531.9|angiomotin-like 2
mm10_v2_chr19_+_44293676_44293676	0.00127837	Sox2	ENSMUST00000026221.5|Scd2|ENSMUSG00000025203.5|stearoyl-Coenzyme A desaturase 2
mm10_v2_chr6_+_86404336_86404473	0.00120875	Sox2	ENSMUST00000113713.2|Tia1|ENSMUSG00000071337.5|cytotoxic granule-associated RNA binding protein 1 	ENSMUST00000113708.1|Tia1|ENSMUSG00000071337.5|cytotoxic granule-associated RNA binding protein 1
mm10_v2_chr3_-_145099024_145099104	0.00105191	Sox2	ENSMUST00000040465.6|Clca5|ENSMUSG00000036960.6|chloride channel calcium activated 5
mm10_v2_chr2_+_18055203_18055237	0.000650653	Sox2	ENSMUST00000028076.8|Mllt10|ENSMUSG00000026743.10|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
mm10_v2_chr10_-_62486772_62486805	0.00050232	Sox2	ENSMUST00000105447.3|Vps26a|ENSMUSG00000020078.9|vacuolar protein sorting 26 homolog A (yeast)
