mm10_v2_chr19_+_41482632_41482688	0.0351235	UAAGACU	ENSMUST00000067795.5|Lcor|ENSMUSG00000025019.9|ligand dependent nuclear receptor corepressor
mm10_v2_chr1_-_119837613_119837673	0.0292909	UAAGACU	ENSMUST00000064091.5|Ptpn4|ENSMUSG00000026384.7|protein tyrosine phosphatase, non-receptor type 4
mm10_v2_chr4_+_17853451_17853474	0.0250749	UAAGACU	ENSMUST00000029881.3|Mmp16|ENSMUSG00000028226.9|matrix metallopeptidase 16
mm10_v2_chr17_+_29093763_29093781	0.0168739	UAAGACU	ENSMUST00000023829.6|Cdkn1a|ENSMUSG00000023067.7|cyclin-dependent kinase inhibitor 1A (P21)
mm10_v2_chr1_+_99772765_99772765	0.0152357	UAAGACU	ENSMUST00000086738.3|Cntnap5b|ENSMUSG00000067028.5|contactin associated protein-like 5B
mm10_v2_chr3_-_122984404_122984512	0.0143256	UAAGACU	ENSMUST00000090379.2|Usp53|ENSMUSG00000039701.7|ubiquitin specific peptidase 53
mm10_v2_chr4_-_87230435_87230477	0.0126519	UAAGACU	ENSMUST00000107157.2|Slc24a2|ENSMUSG00000037996.11|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm10_v2_chr14_-_105176860_105176918	0.012612	UAAGACU	ENSMUST00000163545.1|Rbm26|ENSMUSG00000022119.9|RNA binding motif protein 26
mm10_v2_chr1_-_105356658_105356714	0.0121578	UAAGACU	ENSMUST00000058688.5|Rnf152|ENSMUSG00000047496.5|ring finger protein 152 	ENSMUST00000172299.1|Rnf152|ENSMUSG00000047496.5|ring finger protein 152
mm10_v2_chr3_-_116424007_116424032	0.0121344	UAAGACU	ENSMUST00000090464.4|Cdc14a|ENSMUSG00000033502.8|CDC14 cell division cycle 14A
mm10_v2_chr10_-_118868903_118868903	0.0119455	UAAGACU	ENSMUST00000004281.8|Dyrk2|ENSMUSG00000028630.8|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
mm10_v2_chr8_+_90828820_90828842	0.0115914	UAAGACU	ENSMUST00000109614.2|Chd9|ENSMUSG00000056608.7|chromodomain helicase DNA binding protein 9 	ENSMUST00000048665.6|Chd9|ENSMUSG00000056608.7|chromodomain helicase DNA binding protein 9
mm10_v2_chr11_+_54438188_54438220	0.010951	UAAGACU	ENSMUST00000046835.7|Fnip1|ENSMUSG00000035992.9|folliculin interacting protein 1
mm10_v2_chr10_-_23349887_23349919	0.0105885	UAAGACU	ENSMUST00000074366.6|Eya4|ENSMUSG00000010461.8|eyes absent 4 homolog (Drosophila) 	ENSMUST00000092665.4|Eya4|ENSMUSG00000010461.8|eyes absent 4 homolog (Drosophila)
mm10_v2_chr11_-_86357570_86357614	0.0101788	UAAGACU	ENSMUST00000043624.8|Med13|ENSMUSG00000034297.8|mediator complex subunit 13
mm10_v2_chr16_-_76373827_76373852	0.00985973	UAAGACU	ENSMUST00000121927.1|Nrip1|ENSMUSG00000048490.7|nuclear receptor interacting protein 1
mm10_v2_chr6_-_134566913_134566995	0.00927083	UAAGACU	ENSMUST00000032322.8|Lrp6|ENSMUSG00000030201.9|low density lipoprotein receptor-related protein 6
mm10_v2_chr18_+_34220978_34221020	0.00920756	UAAGACU	ENSMUST00000079362.5|Apc|ENSMUSG00000005871.8|adenomatosis polyposis coli 	ENSMUST00000115781.3|Apc|ENSMUSG00000005871.8|adenomatosis polyposis coli
mm10_v2_chr2_-_125782834_125782870	0.00905491	UAAGACU	ENSMUST00000053699.6|Secisbp2l|ENSMUSG00000035093.10|SECIS binding protein 2-like
mm10_v2_chr14_-_121797670_121797753	0.00856137	UAAGACU	ENSMUST00000100299.3|Dock9|ENSMUSG00000025558.9|dedicator of cytokinesis 9
mm10_v2_chr13_-_48625571_48625594	0.0085589	UAAGACU	ENSMUST00000035824.9|Ptpdc1|ENSMUSG00000038042.9|protein tyrosine phosphatase domain containing 1
mm10_v2_chr4_-_126429501_126429556	0.00808267	UAAGACU	ENSMUST00000069097.6|Ago3|ENSMUSG00000028842.9|argonaute RISC catalytic subunit 3
mm10_v2_chr18_+_32163073_32163115	0.00789811	UAAGACU	ENSMUST00000096575.3|Map3k2|ENSMUSG00000024383.8|mitogen-activated protein kinase kinase kinase 2
mm10_v2_chr4_-_110287479_110287534	0.00785579	UAAGACU	ENSMUST00000106598.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) 	ENSMUST00000102723.4|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) 	ENSMUST00000153906.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm10_v2_chr15_+_58415456_58415512	0.0078336	UAAGACU	ENSMUST00000037270.3|D15Ertd621e|ENSMUSG00000037119.3|DNA segment, Chr 15, ERATO Doi 621, expressed
mm10_v2_chr11_+_44617310_44617336	0.00780121	UAAGACU	ENSMUST00000081265.5|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000101326.3|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000109268.1|Ebf1|ENSMUSG00000057098.8|early B cell factor 1
mm10_v2_chrX_-_164980310_164980375	0.00640843	UAAGACU	ENSMUST00000004715.1|Mospd2|ENSMUSG00000061778.4|motile sperm domain containing 2 	ENSMUST00000112248.2|Mospd2|ENSMUSG00000061778.4|motile sperm domain containing 2
mm10_v2_chr9_+_72532214_72532271	0.00613335	UAAGACU	ENSMUST00000163401.2|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7 	ENSMUST00000093820.3|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7
mm10_v2_chr4_-_56865135_56865208	0.0058021	UAAGACU	ENSMUST00000107612.2|Ctnnal1|ENSMUSG00000038816.8|catenin (cadherin associated protein), alpha-like 1 	ENSMUST00000045142.8|Ctnnal1|ENSMUSG00000038816.8|catenin (cadherin associated protein), alpha-like 1
mm10_v2_chr9_-_72111827_72111895	0.00552383	UAAGACU	ENSMUST00000183404.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12 	ENSMUST00000184783.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr6_-_54566484_54566491	0.00549315	UAAGACU	ENSMUST00000019268.4|Scrn1|ENSMUSG00000019124.4|secernin 1
mm10_v2_chr9_-_64737623_64737645	0.00538743	UAAGACU	ENSMUST00000169058.1|Rab11a|ENSMUSG00000004771.6|RAB11a, member RAS oncogene family
mm10_v2_chr6_+_38433913_38433965	0.00538441	UAAGACU	ENSMUST00000160583.1|Ubn2|ENSMUSG00000038538.11|ubinuclein 2
mm10_v2_chr5_-_5266038_5266292	0.00525306	UAAGACU	ENSMUST00000115451.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14 	ENSMUST00000115452.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14 	ENSMUST00000131392.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14
mm10_v2_chr3_+_157947414_157947510	0.00522734	UAAGACU	ENSMUST00000164582.1|Ankrd13c|ENSMUSG00000039988.8|ankyrin repeat domain 13c 	ENSMUST00000040787.8|Ankrd13c|ENSMUSG00000039988.8|ankyrin repeat domain 13c
mm10_v2_chr6_-_99666762_99666786	0.00511487	UAAGACU	ENSMUST00000032151.2|Eif4e3|ENSMUSG00000093661.1|eukaryotic translation initiation factor 4E member 3
mm10_v2_chr6_-_39206782_39206831	0.00498278	UAAGACU	ENSMUST00000002305.8|Jhdm1d|ENSMUSG00000042599.8|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
mm10_v2_chr1_+_82586942_82586988	0.00464728	UAAGACU	ENSMUST00000113457.2|Col4a3|ENSMUSG00000079465.2|collagen, type IV, alpha 3
mm10_v2_chr5_+_129941949_129942113	0.00420512	UAAGACU	ENSMUST00000051758.7|Vkorc1l1|ENSMUSG00000066735.5|vitamin K epoxide reductase complex, subunit 1-like 1 	ENSMUST00000073945.4|Vkorc1l1|ENSMUSG00000066735.5|vitamin K epoxide reductase complex, subunit 1-like 1
mm10_v2_chr14_-_72709986_72710027	0.00400087	UAAGACU	ENSMUST00000089017.5|Fndc3a|ENSMUSG00000033487.8|fibronectin type III domain containing 3A
mm10_v2_chr4_+_138216296_138216324	0.00398937	UAAGACU	ENSMUST00000105827.1|Hp1bp3|ENSMUSG00000028759.7|heterochromatin protein 1, binding protein 3
mm10_v2_chr16_+_23107754_23107761	0.00389348	UAAGACU	ENSMUST00000077605.5|Eif4a2|ENSMUSG00000022884.8|eukaryotic translation initiation factor 4A2 	ENSMUST00000115341.3|Eif4a2|ENSMUSG00000022884.8|eukaryotic translation initiation factor 4A2
mm10_v2_chr13_+_80883403_80883422	0.00374509	UAAGACU	ENSMUST00000099356.2|Arrdc3|ENSMUSG00000074794.3|arrestin domain containing 3
mm10_v2_chr4_-_41314877_41314889	0.00371841	UAAGACU	ENSMUST00000030145.8|Dcaf12|ENSMUSG00000028436.8|DDB1 and CUL4 associated factor 12
mm10_v2_chr17_-_51832666_51832678	0.00365802	UAAGACU	ENSMUST00000144331.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1
mm10_v2_chr9_+_122117338_122117367	0.00353119	UAAGACU	ENSMUST00000120173.1|Snrk|ENSMUSG00000038145.10|SNF related kinase 	ENSMUST00000134949.1|Snrk|ENSMUSG00000038145.10|SNF related kinase 	ENSMUST00000119215.1|Snrk|ENSMUSG00000038145.10|SNF related kinase
mm10_v2_chr2_+_74711911_74711939	0.00340794	UAAGACU	ENSMUST00000111983.2|Hoxd3|ENSMUSG00000079277.3|homeobox D3
mm10_v2_chr2_-_6884975_6884996	0.00334826	UAAGACU	ENSMUST00000114924.3|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000170438.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000114934.4|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr13_-_107890059_107890073	0.00306341	UAAGACU	ENSMUST00000105097.2|Zswim6|ENSMUSG00000032846.9|zinc finger SWIM-type containing 6
mm10_v2_chr10_-_115315546_115315615	0.00299416	UAAGACU	ENSMUST00000020343.7|Rab21|ENSMUSG00000020132.9|RAB21, member RAS oncogene family
mm10_v2_chr3_-_79567679_79567764	0.00268026	UAAGACU	ENSMUST00000076136.4|Fnip2|ENSMUSG00000061175.5|folliculin interacting protein 2
mm10_v2_chr3_+_89520152_89520175	0.0024615	UAAGACU	ENSMUST00000000811.7|Kcnn3|ENSMUSG00000000794.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
mm10_v2_chr19_-_32712287_32712336	0.00243852	UAAGACU	ENSMUST00000070210.4|Atad1|ENSMUSG00000013662.5|ATPase family, AAA domain containing 1
mm10_v2_chr1_+_74506044_74506105	0.00214137	UAAGACU	ENSMUST00000087215.5|Rqcd1|ENSMUSG00000026174.8|rcd1 (required for cell differentiation) homolog 1 (S. pombe)
mm10_v2_chr18_+_36281069_36281151	0.00204856	UAAGACU	ENSMUST00000051301.3|Pura|ENSMUSG00000043991.3|purine rich element binding protein A
mm10_v2_chr12_-_91590009_91590056	0.00201085	UAAGACU	ENSMUST00000021345.6|Gtf2a1|ENSMUSG00000020962.7|general transcription factor II A, 1
mm10_v2_chr15_-_93275151_93275178	0.0019177	UAAGACU	ENSMUST00000057896.4|Gxylt1|ENSMUSG00000036197.9|glucoside xylosyltransferase 1 	ENSMUST00000049484.6|Gxylt1|ENSMUSG00000036197.9|glucoside xylosyltransferase 1
mm10_v2_chr12_-_69681795_69681869	0.00153722	UAAGACU	ENSMUST00000183277.1|Sos2|ENSMUSG00000034801.7|son of sevenless homolog 2 (Drosophila) 	ENSMUST00000035773.7|Sos2|ENSMUSG00000034801.7|son of sevenless homolog 2 (Drosophila)
mm10_v2_chr18_-_16809233_16809324	0.00124096	UAAGACU	ENSMUST00000025166.7|Cdh2|ENSMUSG00000024304.8|cadherin 2
mm10_v2_chr7_-_66689589_66689603	0.00112359	UAAGACU	ENSMUST00000124899.1|Asb7|ENSMUSG00000030509.10|ankyrin repeat and SOCS box-containing 7
mm10_v2_chr6_+_77242644_77242697	0.00107391	UAAGACU	ENSMUST00000159616.1|Lrrtm1|ENSMUSG00000060780.2|leucine rich repeat transmembrane neuronal 1
mm10_v2_chr18_+_38250240_38250287	0.00104858	UAAGACU	ENSMUST00000025314.5|0610009O20Rik|ENSMUSG00000024442.5|RIKEN cDNA 0610009O20 gene
mm10_v2_chr10_+_95940663_95940703	0.001026	UAAGACU	ENSMUST00000053484.6|Eea1|ENSMUSG00000036499.8|early endosome antigen 1
mm10_v2_chr11_-_78697370_78697475	0.000976466	UAAGACU	ENSMUST00000142739.1|Nlk|ENSMUSG00000017376.9|nemo like kinase
mm10_v2_chr13_-_111490111_111490139	0.0009351	UAAGACU	ENSMUST00000047627.7|Gpbp1|ENSMUSG00000032745.11|GC-rich promoter binding protein 1
mm10_v2_chr2_-_37647199_37647285	0.000872745	UAAGACU	ENSMUST00000028279.3|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr13_-_56135629_56135655	0.000752472	UAAGACU	ENSMUST00000016081.6|H2afy|ENSMUSG00000015937.8|H2A histone family, member Y 	ENSMUST00000045788.7|H2afy|ENSMUSG00000015937.8|H2A histone family, member Y
mm10_v2_chr1_+_191906743_191906767	0.000620986	UAAGACU	ENSMUST00000044954.6|Slc30a1|ENSMUSG00000037434.7|solute carrier family 30 (zinc transporter), member 1
mm10_v2_chr6_-_100287441_100287465	0.000480209	UAAGACU	ENSMUST00000101118.2|Rybp|ENSMUSG00000072872.2|RING1 and YY1 binding protein
mm10_v2_chr11_-_19018956_19018973	0.00045676	UAAGACU	ENSMUST00000068264.7|Meis1|ENSMUSG00000020160.12|Meis homeobox 1 	ENSMUST00000144988.1|Meis1|ENSMUSG00000020160.12|Meis homeobox 1 	ENSMUST00000185131.1|Meis1|ENSMUSG00000020160.12|Meis homeobox 1
mm10_v2_chr14_-_20546512_20546582	0.000399347	UAAGACU	ENSMUST00000022355.4|Ppp3cb|ENSMUSG00000021816.4|protein phosphatase 3, catalytic subunit, beta isoform 	ENSMUST00000161445.1|Ppp3cb|ENSMUSG00000021816.4|protein phosphatase 3, catalytic subunit, beta isoform 	ENSMUST00000159027.1|Ppp3cb|ENSMUSG00000021816.4|protein phosphatase 3, catalytic subunit, beta isoform
mm10_v2_chr11_+_97415527_97415538	0.000331608	UAAGACU	ENSMUST00000121799.1|Arhgap23|ENSMUSG00000049807.10|Rho GTPase activating protein 23
mm10_v2_chr8_+_61224162_61224174	0.000221486	UAAGACU	ENSMUST00000034060.5|Sh3rf1|ENSMUSG00000031642.8|SH3 domain containing ring finger 1
mm10_v2_chr9_+_32696005_32696121	0.000189078	UAAGACU	ENSMUST00000034534.6|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain 	ENSMUST00000050797.7|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain 	ENSMUST00000184887.1|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain
mm10_v2_chr17_+_29549783_29549798	9.62981e-05	UAAGACU	ENSMUST00000048677.7|Tbc1d22b|ENSMUSG00000042203.7|TBC1 domain family, member 22B
mm10_v2_chr11_-_82829024_82829043	1.13239e-05	UAAGACU	ENSMUST00000021036.6|Rffl|ENSMUSG00000020696.12|ring finger and FYVE like domain containing protein 	ENSMUST00000074515.4|Rffl|ENSMUSG00000020696.12|ring finger and FYVE like domain containing protein 	ENSMUST00000103218.2|Rffl|ENSMUSG00000020696.12|ring finger and FYVE like domain containing protein
