mm10_v2_chrX_+_93286499_93286522	0.170542	UCCCUUU	ENSMUST00000046565.7|Arx|ENSMUSG00000035277.9|aristaless related homeobox 	ENSMUST00000113947.2|Arx|ENSMUSG00000035277.9|aristaless related homeobox
mm10_v2_chr6_+_41605482_41605569	0.0910054	UCCCUUU	ENSMUST00000114732.2|Ephb6|ENSMUSG00000029869.7|Eph receptor B6
mm10_v2_chr19_+_5474681_5474775	0.0866922	UCCCUUU	ENSMUST00000165485.1|Efemp2|ENSMUSG00000024909.8|epidermal growth factor-containing fibulin-like extracellular matrix protein 2 	ENSMUST00000166253.1|Efemp2|ENSMUSG00000024909.8|epidermal growth factor-containing fibulin-like extracellular matrix protein 2 	ENSMUST00000167371.1|Efemp2|ENSMUSG00000024909.8|epidermal growth factor-containing fibulin-like extracellular matrix protein 2 	ENSMUST00000167855.1|Efemp2|ENSMUSG00000024909.8|epidermal growth factor-containing fibulin-like extracellular matrix protein 2 	ENSMUST00000070118.7|Efemp2|ENSMUSG00000024909.8|epidermal growth factor-containing fibulin-like extracellular matrix protein 2
mm10_v2_chr8_+_54954728_54954820	0.0847588	UCCCUUU	ENSMUST00000033915.7|Gpm6a|ENSMUSG00000031517.7|glycoprotein m6a
mm10_v2_chr8_+_76899772_76899828	0.0803594	UCCCUUU	ENSMUST00000109913.2|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2
mm10_v2_chr6_-_113343975_113343989	0.0751199	UCCCUUU	ENSMUST00000155543.1|Camk1|ENSMUSG00000030272.9|calcium/calmodulin-dependent protein kinase I 	ENSMUST00000032409.8|Camk1|ENSMUSG00000030272.9|calcium/calmodulin-dependent protein kinase I
mm10_v2_chr8_-_38661508_38661545	0.067764	UCCCUUU	ENSMUST00000118896.1|Sgcz|ENSMUSG00000039539.7|sarcoglycan zeta
mm10_v2_chr3_+_28263205_28263215	0.0624642	UCCCUUU	ENSMUST00000159236.2|Tnik|ENSMUSG00000027692.10|TRAF2 and NCK interacting kinase
mm10_v2_chr10_-_9675163_9675243	0.0616132	UCCCUUU	ENSMUST00000100070.2|Samd5|ENSMUSG00000060487.5|sterile alpha motif domain containing 5
mm10_v2_chr11_-_69560186_69560213	0.0582316	UCCCUUU	ENSMUST00000004036.5|Efnb3|ENSMUSG00000003934.5|ephrin B3
mm10_v2_chr1_+_75546258_75546312	0.0531952	UCCCUUU	ENSMUST00000124341.1|Slc4a3|ENSMUSG00000006576.10|solute carrier family 4 (anion exchanger), member 3
mm10_v2_chr7_+_4119525_4119555	0.0505982	UCCCUUU	ENSMUST00000119661.1|Ttyh1|ENSMUSG00000030428.10|tweety homolog 1 (Drosophila) 	ENSMUST00000129423.1|Ttyh1|ENSMUSG00000030428.10|tweety homolog 1 (Drosophila)
mm10_v2_chr4_+_152338619_152338709	0.0503607	UCCCUUU	ENSMUST00000030775.5|Chd5|ENSMUSG00000005045.10|chromodomain helicase DNA binding protein 5 	ENSMUST00000164662.1|Chd5|ENSMUSG00000005045.10|chromodomain helicase DNA binding protein 5
mm10_v2_chr4_+_137277489_137277518	0.0499532	UCCCUUU	ENSMUST00000045747.4|Wnt4|ENSMUSG00000036856.4|wingless-related MMTV integration site 4
mm10_v2_chr18_+_9212856_9212856	0.0484542	UCCCUUU	ENSMUST00000041080.5|Fzd8|ENSMUSG00000036904.5|frizzled homolog 8 (Drosophila)
mm10_v2_chr8_-_90348343_90348386	0.0450344	UCCCUUU	ENSMUST00000109621.3|Tox3|ENSMUSG00000043668.7|TOX high mobility group box family member 3
mm10_v2_chr15_-_78120011_78120033	0.0447255	UCCCUUU	ENSMUST00000019290.2|Cacng2|ENSMUSG00000019146.2|calcium channel, voltage-dependent, gamma subunit 2
mm10_v2_chr2_+_84840612_84840640	0.044276	UCCCUUU	ENSMUST00000111625.1|Slc43a1|ENSMUSG00000027075.10|solute carrier family 43, member 1
mm10_v2_chr17_-_6782775_6782784	0.0439219	UCCCUUU	ENSMUST00000064234.6|Ezr|ENSMUSG00000052397.8|ezrin
mm10_v2_chr15_-_98898483_98898558	0.0436514	UCCCUUU	ENSMUST00000023737.4|Dhh|ENSMUSG00000023000.4|desert hedgehog
mm10_v2_chr14_-_24245913_24245925	0.0425872	UCCCUUU	ENSMUST00000073687.6|Dlg5|ENSMUSG00000021782.8|discs, large homolog 5 (Drosophila) 	ENSMUST00000090398.4|Dlg5|ENSMUSG00000021782.8|discs, large homolog 5 (Drosophila)
mm10_v2_chr5_-_51553896_51553921	0.0418669	UCCCUUU	ENSMUST00000132734.1|Ppargc1a|ENSMUSG00000029167.7|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm10_v2_chr15_+_25622525_25622558	0.0402698	UCCCUUU	ENSMUST00000110457.1|Myo10|ENSMUSG00000022272.11|myosin X 	ENSMUST00000137601.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr18_-_16809233_16809324	0.0385781	UCCCUUU	ENSMUST00000025166.7|Cdh2|ENSMUSG00000024304.8|cadherin 2
mm10_v2_chr4_-_58553311_58553357	0.0374009	UCCCUUU	ENSMUST00000107571.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1 	ENSMUST00000055018.4|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1
mm10_v2_chr5_+_19907502_19907551	0.0361618	UCCCUUU	ENSMUST00000101558.3|Magi2|ENSMUSG00000040003.11|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm10_v2_chr8_-_26119125_26119233	0.0355572	UCCCUUU	ENSMUST00000037182.7|Hook3|ENSMUSG00000037234.10|hook homolog 3 (Drosophila)
mm10_v2_chr8_+_72161101_72161200	0.0348756	UCCCUUU	ENSMUST00000003121.8|Rab8a|ENSMUSG00000003037.10|RAB8A, member RAS oncogene family
mm10_v2_chr6_+_108783059_108783116	0.0333181	UCCCUUU	ENSMUST00000032196.6|Arl8b|ENSMUSG00000030105.6|ADP-ribosylation factor-like 8B
mm10_v2_chr6_-_72789240_72789262	0.0324966	UCCCUUU	ENSMUST00000069536.5|Tcf7l1|ENSMUSG00000055799.7|transcription factor 7 like 1 (T cell specific, HMG box)
mm10_v2_chr7_+_141562162_141562192	0.0312998	UCCCUUU	ENSMUST00000003038.8|Ap2a2|ENSMUSG00000002957.8|adaptor-related protein complex 2, alpha 2 subunit
mm10_v2_chr2_-_130840091_130840150	0.0298019	UCCCUUU	ENSMUST00000044766.8|4930402H24Rik|ENSMUSG00000027309.12|RIKEN cDNA 4930402H24 gene 	ENSMUST00000138990.1|4930402H24Rik|ENSMUSG00000027309.12|RIKEN cDNA 4930402H24 gene 	ENSMUST00000120316.1|4930402H24Rik|ENSMUSG00000027309.12|RIKEN cDNA 4930402H24 gene 	ENSMUST00000110243.1|4930402H24Rik|ENSMUSG00000027309.12|RIKEN cDNA 4930402H24 gene
mm10_v2_chr13_+_40859768_40859822	0.0297834	UCCCUUU	ENSMUST00000110191.2|Gcnt2|ENSMUSG00000021360.9|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm10_v2_chr1_-_43098622_43098686	0.02978	UCCCUUU	ENSMUST00000095014.1|Tgfbrap1|ENSMUSG00000070939.3|transforming growth factor, beta receptor associated protein 1
mm10_v2_chr11_+_68968107_68968175	0.0295252	UCCCUUU	ENSMUST00000102606.3|Slc25a35|ENSMUSG00000018740.8|solute carrier family 25, member 35 	ENSMUST00000018884.5|Slc25a35|ENSMUSG00000018740.8|solute carrier family 25, member 35
mm10_v2_chr10_-_123076367_123076505	0.0294035	UCCCUUU	ENSMUST00000073792.3|Mon2|ENSMUSG00000034602.7|MON2 homolog (yeast) 	ENSMUST00000170935.1|Mon2|ENSMUSG00000034602.7|MON2 homolog (yeast) 	ENSMUST00000037557.7|Mon2|ENSMUSG00000034602.7|MON2 homolog (yeast)
mm10_v2_chr9_-_22052021_22052026	0.0290616	UCCCUUU	ENSMUST00000003501.7|Elavl3|ENSMUSG00000003410.7|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)
mm10_v2_chr16_+_90826719_90826757	0.0273891	UCCCUUU	ENSMUST00000099548.2|Eva1c|ENSMUSG00000039903.10|eva-1 homolog C (C. elegans)
mm10_v2_chr11_-_120573253_120573329	0.0273635	UCCCUUU	ENSMUST00000026122.4|P4hb|ENSMUSG00000025130.5|prolyl 4-hydroxylase, beta polypeptide
mm10_v2_chr16_+_8830093_8830104	0.0258658	UCCCUUU	ENSMUST00000023150.5|1810013L24Rik|ENSMUSG00000022507.5|RIKEN cDNA 1810013L24 gene
mm10_v2_chr12_-_104865076_104865138	0.0253036	UCCCUUU	ENSMUST00000109937.1|Clmn|ENSMUSG00000021097.8|calmin 	ENSMUST00000109936.1|Clmn|ENSMUSG00000021097.8|calmin
mm10_v2_chr8_-_123983120_123983152	0.0250445	UCCCUUU	ENSMUST00000075578.6|Abcb10|ENSMUSG00000031974.8|ATP-binding cassette, sub-family B (MDR/TAP), member 10
mm10_v2_chr9_+_104002546_104002776	0.0248782	UCCCUUU	ENSMUST00000035167.8|Nphp3|ENSMUSG00000032558.12|nephronophthisis 3 (adolescent) 	ENSMUST00000117054.1|Nphp3|ENSMUSG00000032558.12|nephronophthisis 3 (adolescent)
mm10_v2_chr13_+_31806627_31806650	0.0246866	UCCCUUU	ENSMUST00000062292.2|Foxc1|ENSMUSG00000050295.2|forkhead box C1
mm10_v2_chr8_-_87804411_87804463	0.0244571	UCCCUUU	ENSMUST00000165770.2|Zfp423|ENSMUSG00000045333.9|zinc finger protein 423
mm10_v2_chr8_+_13159135_13159168	0.0236419	UCCCUUU	ENSMUST00000033824.6|Lamp1|ENSMUSG00000031447.6|lysosomal-associated membrane protein 1
mm10_v2_chrX_-_144688180_144688180	0.0233368	UCCCUUU	ENSMUST00000040184.3|Trpc5|ENSMUSG00000041710.4|transient receptor potential cation channel, subfamily C, member 5
mm10_v2_chr2_+_152081529_152081624	0.0214502	UCCCUUU	ENSMUST00000064061.3|Scrt2|ENSMUSG00000060257.2|scratch homolog 2, zinc finger protein (Drosophila)
mm10_v2_chr2_+_179442427_179442442	0.021171	UCCCUUU	ENSMUST00000000314.6|Cdh4|ENSMUSG00000000305.6|cadherin 4
mm10_v2_chr4_+_117252010_117252057	0.0209085	UCCCUUU	ENSMUST00000125943.1|Tmem53|ENSMUSG00000048772.9|transmembrane protein 53 	ENSMUST00000106434.1|Tmem53|ENSMUSG00000048772.9|transmembrane protein 53
mm10_v2_chr7_+_99535439_99535498	0.0207586	UCCCUUU	ENSMUST00000098266.2|Arrb1|ENSMUSG00000018909.9|arrestin, beta 1 	ENSMUST00000179755.1|Arrb1|ENSMUSG00000018909.9|arrestin, beta 1
mm10_v2_chr8_+_121590361_121590484	0.0207316	UCCCUUU	ENSMUST00000034270.10|Map1lc3b|ENSMUSG00000031812.10|microtubule-associated protein 1 light chain 3 beta 	ENSMUST00000181948.1|Map1lc3b|ENSMUSG00000031812.10|microtubule-associated protein 1 light chain 3 beta
mm10_v2_chr14_+_121035538_121035575	0.020159	UCCCUUU	ENSMUST00000026635.7|Farp1|ENSMUSG00000025555.8|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
mm10_v2_chr19_+_18749983_18749983	0.0200889	UCCCUUU	ENSMUST00000040489.7|Trpm6|ENSMUSG00000024727.8|transient receptor potential cation channel, subfamily M, member 6
mm10_v2_chr1_-_131279544_131279606	0.0195382	UCCCUUU	ENSMUST00000062108.3|Ikbke|ENSMUSG00000042349.7|inhibitor of kappaB kinase epsilon
mm10_v2_chr8_+_108714644_108714644	0.019135	UCCCUUU	ENSMUST00000043896.8|Zfhx3|ENSMUSG00000038872.8|zinc finger homeobox 3
mm10_v2_chr6_-_92214897_92214925	0.0177398	UCCCUUU	ENSMUST00000014694.8|Zfyve20|ENSMUSG00000014550.8|zinc finger, FYVE domain containing 20
mm10_v2_chr6_+_108828633_108828721	0.017215	UCCCUUU	ENSMUST00000089162.3|Edem1|ENSMUSG00000030104.7|ER degradation enhancer, mannosidase alpha-like 1
mm10_v2_chr11_+_54438188_54438220	0.0170739	UCCCUUU	ENSMUST00000046835.7|Fnip1|ENSMUSG00000035992.9|folliculin interacting protein 1
mm10_v2_chr13_+_37826225_37826315	0.0169298	UCCCUUU	ENSMUST00000128570.1|Rreb1|ENSMUSG00000039087.10|ras responsive element binding protein 1
mm10_v2_chr10_+_67979569_67979575	0.0162273	UCCCUUU	ENSMUST00000118160.1|Rtkn2|ENSMUSG00000037846.12|rhotekin 2
mm10_v2_chr6_-_118139094_118139158	0.0160824	UCCCUUU	ENSMUST00000049344.8|Csgalnact2|ENSMUSG00000042042.8|chondroitin sulfate N-acetylgalactosaminyltransferase 2
mm10_v2_chr16_+_17451981_17452034	0.0158701	UCCCUUU	ENSMUST00000006293.3|Crkl|ENSMUSG00000006134.3|v-crk sarcoma virus CT10 oncogene homolog (avian)-like
mm10_v2_chr7_-_128461630_128461672	0.0149558	UCCCUUU	ENSMUST00000106226.2|Tial1|ENSMUSG00000030846.9|Tia1 cytotoxic granule-associated RNA binding protein-like 1
mm10_v2_chr6_-_31563978_31563989	0.014519	UCCCUUU	ENSMUST00000026698.7|Podxl|ENSMUSG00000025608.9|podocalyxin-like
mm10_v2_chr18_+_51117754_51117898	0.0142421	UCCCUUU	ENSMUST00000116639.2|Prr16|ENSMUSG00000073565.4|proline rich 16
mm10_v2_chr2_+_173659760_173659816	0.0140821	UCCCUUU	ENSMUST00000029024.3|Rab22a|ENSMUSG00000027519.4|RAB22A, member RAS oncogene family
mm10_v2_chr6_+_114643094_114643105	0.0137592	UCCCUUU	ENSMUST00000032457.10|Atg7|ENSMUSG00000030314.10|autophagy related 7
mm10_v2_chr1_-_21079162_21079243	0.013716	UCCCUUU	ENSMUST00000037998.4|Tram2|ENSMUSG00000041779.4|translocating chain-associating membrane protein 2
mm10_v2_chr6_-_118197732_118197744	0.013306	UCCCUUU	ENSMUST00000032201.5|Ret|ENSMUSG00000030110.7|ret proto-oncogene 	ENSMUST00000088790.3|Ret|ENSMUSG00000030110.7|ret proto-oncogene
mm10_v2_chr9_-_60511003_60511035	0.0129371	UCCCUUU	ENSMUST00000098660.3|Thsd4|ENSMUSG00000032289.9|thrombospondin, type I, domain containing 4
mm10_v2_chr4_+_57637816_57637846	0.0124955	UCCCUUU	ENSMUST00000150412.1|Gm20459|ENSMUSG00000089945.4|predicted gene 20459
mm10_v2_chr4_-_151996113_151996258	0.0123551	UCCCUUU	ENSMUST00000055688.9|Phf13|ENSMUSG00000047777.9|PHD finger protein 13
mm10_v2_chr12_-_3309912_3309975	0.0123294	UCCCUUU	ENSMUST00000021001.8|Rab10|ENSMUSG00000020671.8|RAB10, member RAS oncogene family
mm10_v2_chr2_+_25180737_25180764	0.0122702	UCCCUUU	ENSMUST00000104999.2|Nrarp|ENSMUSG00000078202.2|Notch-regulated ankyrin repeat protein
mm10_v2_chr13_+_9093893_9093927	0.0119013	UCCCUUU	ENSMUST00000091829.2|Larp4b|ENSMUSG00000033499.7|La ribonucleoprotein domain family, member 4B
mm10_v2_chrX_+_159255782_159255899	0.0118446	UCCCUUU	ENSMUST00000126686.1|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3 	ENSMUST00000033671.6|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3
mm10_v2_chr1_+_59912972_59913027	0.0118401	UCCCUUU	ENSMUST00000036540.5|Fam117b|ENSMUSG00000041040.6|family with sequence similarity 117, member B
mm10_v2_chr11_+_20201406_20201448	0.0115981	UCCCUUU	ENSMUST00000020358.5|Rab1|ENSMUSG00000020149.11|RAB1, member RAS oncogene family 	ENSMUST00000109602.1|Rab1|ENSMUSG00000020149.11|RAB1, member RAS oncogene family 	ENSMUST00000109601.1|Rab1|ENSMUSG00000020149.11|RAB1, member RAS oncogene family
mm10_v2_chr8_+_106059562_106059623	0.0113317	UCCCUUU	ENSMUST00000109308.1|Nfatc3|ENSMUSG00000031902.9|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3
mm10_v2_chr5_+_105699945_105700041	0.0112251	UCCCUUU	ENSMUST00000060531.9|Lrrc8d|ENSMUSG00000046079.10|leucine rich repeat containing 8D
mm10_v2_chr16_-_23988852_23988852	0.0111259	UCCCUUU	ENSMUST00000023151.5|Bcl6|ENSMUSG00000022508.5|B cell leukemia/lymphoma 6
mm10_v2_chr9_-_99140065_99140087	0.0110752	UCCCUUU	ENSMUST00000035037.7|Pik3cb|ENSMUSG00000032462.8|phosphatidylinositol 3-kinase, catalytic, beta polypeptide
mm10_v2_chr6_-_57535422_57535447	0.0107422	UCCCUUU	ENSMUST00000042766.3|Ppm1k|ENSMUSG00000037826.3|protein phosphatase 1K (PP2C domain containing)
mm10_v2_chr5_+_110176640_110176701	0.010721	UCCCUUU	ENSMUST00000112512.1|Golga3|ENSMUSG00000029502.8|golgi autoantigen, golgin subfamily a, 3
mm10_v2_chr16_+_41532999_41533069	0.0106105	UCCCUUU	ENSMUST00000099761.3|Lsamp|ENSMUSG00000061080.5|limbic system-associated membrane protein
mm10_v2_chr14_-_39472825_39473088	0.0105725	UCCCUUU	ENSMUST00000168810.2|Nrg3|ENSMUSG00000041014.11|neuregulin 3 	ENSMUST00000173780.1|Nrg3|ENSMUSG00000041014.11|neuregulin 3 	ENSMUST00000166968.2|Nrg3|ENSMUSG00000041014.11|neuregulin 3
mm10_v2_chr15_+_80173642_80173721	0.00998187	UCCCUUU	ENSMUST00000044970.6|Mgat3|ENSMUSG00000042428.6|mannoside acetylglucosaminyltransferase 3
mm10_v2_chr1_-_84284548_84284645	0.00997449	UCCCUUU	ENSMUST00000177458.1|Pid1|ENSMUSG00000045658.10|phosphotyrosine interaction domain containing 1 	ENSMUST00000168574.2|Pid1|ENSMUSG00000045658.10|phosphotyrosine interaction domain containing 1
mm10_v2_chr9_-_113708209_113708259	0.00965926	UCCCUUU	ENSMUST00000111861.3|Pdcd6ip|ENSMUSG00000032504.9|programmed cell death 6 interacting protein 	ENSMUST00000035086.6|Pdcd6ip|ENSMUSG00000032504.9|programmed cell death 6 interacting protein
mm10_v2_chr13_-_17805093_17805189	0.00955354	UCCCUUU	ENSMUST00000042365.7|Cdk13|ENSMUSG00000041297.7|cyclin-dependent kinase 13
mm10_v2_chr14_-_25769033_25769083	0.00938285	UCCCUUU	ENSMUST00000069180.7|Zcchc24|ENSMUSG00000055538.7|zinc finger, CCHC domain containing 24
mm10_v2_chr18_-_13972617_13972733	0.00854562	UCCCUUU	ENSMUST00000025288.7|Zfp521|ENSMUSG00000024420.8|zinc finger protein 521
mm10_v2_chr4_-_143212691_143212728	0.00848515	UCCCUUU	ENSMUST00000105778.1|Prdm2|ENSMUSG00000057637.7|PR domain containing 2, with ZNF domain 	ENSMUST00000134791.1|Prdm2|ENSMUSG00000057637.7|PR domain containing 2, with ZNF domain
mm10_v2_chrX_-_23365044_23365090	0.00830549	UCCCUUU	ENSMUST00000115313.1|Klhl13|ENSMUSG00000036782.7|kelch-like 13
mm10_v2_chr10_-_84440591_84440604	0.00823113	UCCCUUU	ENSMUST00000020220.8|Nuak1|ENSMUSG00000020032.8|NUAK family, SNF1-like kinase, 1
mm10_v2_chr2_+_117121374_117121374	0.00761753	UCCCUUU	ENSMUST00000028829.6|Spred1|ENSMUSG00000027351.8|sprouty protein with EVH-1 domain 1, related sequence
mm10_v2_chr4_+_106911470_106911511	0.00756283	UCCCUUU	ENSMUST00000030367.8|Ssbp3|ENSMUSG00000061887.8|single-stranded DNA binding protein 3 	ENSMUST00000149926.1|Ssbp3|ENSMUSG00000061887.8|single-stranded DNA binding protein 3
mm10_v2_chr4_+_102760294_102760525	0.00732262	UCCCUUU	ENSMUST00000072481.5|Sgip1|ENSMUSG00000028524.15|SH3-domain GRB2-like (endophilin) interacting protein 1 	ENSMUST00000156596.1|Sgip1|ENSMUSG00000028524.15|SH3-domain GRB2-like (endophilin) interacting protein 1 	ENSMUST00000080728.6|Sgip1|ENSMUSG00000028524.15|SH3-domain GRB2-like (endophilin) interacting protein 1 	ENSMUST00000106882.2|Sgip1|ENSMUSG00000028524.15|SH3-domain GRB2-like (endophilin) interacting protein 1
mm10_v2_chr3_-_56183678_56183701	0.00722112	UCCCUUU	ENSMUST00000029374.6|Nbea|ENSMUSG00000027799.8|neurobeachin
mm10_v2_chr15_-_90679307_90679432	0.00722013	UCCCUUU	ENSMUST00000014777.8|Cpne8|ENSMUSG00000052560.9|copine VIII 	ENSMUST00000064391.5|Cpne8|ENSMUSG00000052560.9|copine VIII
mm10_v2_chr11_+_106084577_106084623	0.00701776	UCCCUUU	ENSMUST00000002044.9|Map3k3|ENSMUSG00000020700.11|mitogen-activated protein kinase kinase kinase 3
mm10_v2_chr4_-_155222535_155222592	0.00695809	UCCCUUU	ENSMUST00000084103.3|Ski|ENSMUSG00000029050.9|ski sarcoma viral oncogene homolog (avian) 	ENSMUST00000030917.5|Ski|ENSMUSG00000029050.9|ski sarcoma viral oncogene homolog (avian)
mm10_v2_chrX_+_163908982_163909017	0.00693326	UCCCUUU	ENSMUST00000069041.8|Ap1s2|ENSMUSG00000031367.9|adaptor-related protein complex 1, sigma 2 subunit
mm10_v2_chr5_+_123394782_123394826	0.00683536	UCCCUUU	ENSMUST00000111596.1|Mlxip|ENSMUSG00000038342.9|MLX interacting protein 	ENSMUST00000068237.5|Mlxip|ENSMUSG00000038342.9|MLX interacting protein
mm10_v2_chr1_-_170867761_170867784	0.00653461	UCCCUUU	ENSMUST00000027974.6|Atf6|ENSMUSG00000026663.6|activating transcription factor 6
mm10_v2_chr2_-_164911586_164911757	0.00630171	UCCCUUU	ENSMUST00000041361.7|Zfp335|ENSMUSG00000039834.11|zinc finger protein 335
mm10_v2_chr6_+_100704709_100704742	0.00624113	UCCCUUU	ENSMUST00000032157.7|Gxylt2|ENSMUSG00000030074.8|glucoside xylosyltransferase 2
mm10_v2_chr5_+_114774677_114774677	0.00602624	UCCCUUU	ENSMUST00000102578.4|Ankrd13a|ENSMUSG00000041870.10|ankyrin repeat domain 13a
mm10_v2_chr18_-_58209926_58210067	0.00600217	UCCCUUU	ENSMUST00000025497.6|Fbn2|ENSMUSG00000024598.8|fibrillin 2
mm10_v2_chr2_-_73892530_73892555	0.005867	UCCCUUU	ENSMUST00000136958.1|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000112010.2|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000128531.1|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000112017.1|Atf2|ENSMUSG00000027104.12|activating transcription factor 2
mm10_v2_chr3_-_95217690_95217728	0.00547392	UCCCUUU	ENSMUST00000107209.1|Gabpb2|ENSMUSG00000038766.10|GA repeat binding protein, beta 2
mm10_v2_chr5_+_76974683_76974727	0.00534889	UCCCUUU	ENSMUST00000101087.3|Srp72|ENSMUSG00000036323.8|signal recognition particle 72 	ENSMUST00000120550.1|Srp72|ENSMUSG00000036323.8|signal recognition particle 72
mm10_v2_chr12_-_46818749_46818788	0.00529722	UCCCUUU	ENSMUST00000021438.6|Nova1|ENSMUSG00000021047.6|neuro-oncological ventral antigen 1
mm10_v2_chr1_-_190911728_190911802	0.00524364	UCCCUUU	ENSMUST00000159066.1|Rps6kc1|ENSMUSG00000089872.4|ribosomal protein S6 kinase polypeptide 1 	ENSMUST00000061611.8|Rps6kc1|ENSMUSG00000089872.4|ribosomal protein S6 kinase polypeptide 1
mm10_v2_chr4_+_57845240_57845265	0.00507184	UCCCUUU	ENSMUST00000102903.1|Akap2|ENSMUSG00000038729.14|A kinase (PRKA) anchor protein 2 	ENSMUST00000107598.3|Akap2|ENSMUSG00000038729.14|A kinase (PRKA) anchor protein 2
mm10_v2_chr7_+_110122299_110122350	0.00466434	UCCCUUU	ENSMUST00000033326.8|Wee1|ENSMUSG00000031016.8|WEE 1 homolog 1 (S. pombe)
mm10_v2_chr4_-_129742275_129742312	0.0046356	UCCCUUU	ENSMUST00000066257.5|Khdrbs1|ENSMUSG00000028790.7|KH domain containing, RNA binding, signal transduction associated 1
mm10_v2_chr12_+_53248677_53248677	0.00451801	UCCCUUU	ENSMUST00000101432.2|Npas3|ENSMUSG00000021010.7|neuronal PAS domain protein 3
mm10_v2_chr12_+_83763628_83763648	0.00448571	UCCCUUU	ENSMUST00000121733.1|Papln|ENSMUSG00000021223.7|papilin, proteoglycan-like sulfated glycoprotein
mm10_v2_chr4_-_46991842_46991916	0.00445813	UCCCUUU	ENSMUST00000107749.2|Gabbr2|ENSMUSG00000039809.9|gamma-aminobutyric acid (GABA) B receptor, 2
mm10_v2_chr14_-_61556881_61556890	0.0043688	UCCCUUU	ENSMUST00000022497.8|Spryd7|ENSMUSG00000021930.8|SPRY domain containing 7
mm10_v2_chr15_+_80711292_80711340	0.00430839	UCCCUUU	ENSMUST00000067689.7|Tnrc6b|ENSMUSG00000047888.9|trinucleotide repeat containing 6b
mm10_v2_chr4_-_3938354_3938401	0.00428276	UCCCUUU	ENSMUST00000003369.3|Plag1|ENSMUSG00000003282.3|pleiomorphic adenoma gene 1
mm10_v2_chr6_-_92943485_92943507	0.00425534	UCCCUUU	ENSMUST00000113438.1|Adamts9|ENSMUSG00000030022.8|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9
mm10_v2_chr1_+_127774164_127774238	0.00423179	UCCCUUU	ENSMUST00000027587.8|Ccnt2|ENSMUSG00000026349.8|cyclin T2 	ENSMUST00000112570.1|Ccnt2|ENSMUSG00000026349.8|cyclin T2
mm10_v2_chr3_-_97227364_97227421	0.00412437	UCCCUUU	ENSMUST00000046521.7|Bcl9|ENSMUSG00000038256.9|B cell CLL/lymphoma 9
mm10_v2_chr10_-_40025253_40025286	0.00404241	UCCCUUU	ENSMUST00000163705.2|AI317395|ENSMUSG00000038522.6|expressed sequence AI317395
mm10_v2_chr2_+_31572701_31572725	0.00393599	UCCCUUU	ENSMUST00000055244.6|Fubp3|ENSMUSG00000026843.9|far upstream element (FUSE) binding protein 3
mm10_v2_chr4_+_150281573_150281646	0.00350912	UCCCUUU	ENSMUST00000105682.2|Rere|ENSMUSG00000039852.10|arginine glutamic acid dipeptide (RE) repeats
mm10_v2_chr19_-_12796108_12796146	0.00321532	UCCCUUU	ENSMUST00000038627.8|Zfp91|ENSMUSG00000024695.9|zinc finger protein 91
mm10_v2_chr9_+_62677826_62677843	0.00299102	UCCCUUU	ENSMUST00000034774.8|Itga11|ENSMUSG00000032243.8|integrin alpha 11
mm10_v2_chr11_+_72689997_72690015	0.00253551	UCCCUUU	ENSMUST00000155998.1|Ankfy1|ENSMUSG00000020790.8|ankyrin repeat and FYVE domain containing 1
mm10_v2_chr10_+_128092771_128092819	0.00249943	UCCCUUU	ENSMUST00000170054.2|Baz2a|ENSMUSG00000040054.9|bromodomain adjacent to zinc finger domain, 2A 	ENSMUST00000045621.8|Baz2a|ENSMUSG00000040054.9|bromodomain adjacent to zinc finger domain, 2A
mm10_v2_chr2_-_156992021_156992119	0.00224891	UCCCUUU	ENSMUST00000109558.1|Ndrg3|ENSMUSG00000027634.8|N-myc downstream regulated gene 3 	ENSMUST00000069600.6|Ndrg3|ENSMUSG00000027634.8|N-myc downstream regulated gene 3 	ENSMUST00000072298.6|Ndrg3|ENSMUSG00000027634.8|N-myc downstream regulated gene 3
mm10_v2_chr3_-_89913144_89913172	0.00214423	UCCCUUU	ENSMUST00000029559.6|Il6ra|ENSMUSG00000027947.7|interleukin 6 receptor, alpha
mm10_v2_chr19_-_19001099_19001119	0.00169658	UCCCUUU	ENSMUST00000040153.8|Rorb|ENSMUSG00000036192.9|RAR-related orphan receptor beta 	ENSMUST00000112828.1|Rorb|ENSMUSG00000036192.9|RAR-related orphan receptor beta
mm10_v2_chr18_+_23752333_23752401	0.00154737	UCCCUUU	ENSMUST00000170802.1|Mapre2|ENSMUSG00000024277.8|microtubule-associated protein, RP/EB family, member 2 	ENSMUST00000155708.1|Mapre2|ENSMUSG00000024277.8|microtubule-associated protein, RP/EB family, member 2 	ENSMUST00000118826.2|Mapre2|ENSMUSG00000024277.8|microtubule-associated protein, RP/EB family, member 2
mm10_v2_chr18_-_64660981_64661010	0.00147565	UCCCUUU	ENSMUST00000025482.8|Atp8b1|ENSMUSG00000039529.8|ATPase, class I, type 8B, member 1
mm10_v2_chr15_+_68928414_68928421	0.0012168	UCCCUUU	ENSMUST00000022954.6|Khdrbs3|ENSMUSG00000022332.7|KH domain containing, RNA binding, signal transduction associated 3
mm10_v2_chr9_-_104262900_104262949	0.00110547	UCCCUUU	ENSMUST00000035170.6|Dnajc13|ENSMUSG00000032560.7|DnaJ (Hsp40) homolog, subfamily C, member 13
mm10_v2_chr2_+_109917639_109917656	0.00098376	UCCCUUU	ENSMUST00000046548.7|Lgr4|ENSMUSG00000050199.7|leucine-rich repeat-containing G protein-coupled receptor 4 	ENSMUST00000111037.2|Lgr4|ENSMUSG00000050199.7|leucine-rich repeat-containing G protein-coupled receptor 4
mm10_v2_chrX_+_77511002_77511100	0.000939246	UCCCUUU	ENSMUST00000088217.5|Tbl1x|ENSMUSG00000025246.7|transducin (beta)-like 1 X-linked
mm10_v2_chr10_+_128805652_128805694	0.000937454	UCCCUUU	ENSMUST00000026410.1|Dnajc14|ENSMUSG00000025354.4|DnaJ (Hsp40) homolog, subfamily C, member 14
mm10_v2_chr4_+_41135743_41135898	0.000917223	UCCCUUU	ENSMUST00000040008.3|Ube2r2|ENSMUSG00000036241.3|ubiquitin-conjugating enzyme E2R 2
mm10_v2_chr1_-_34843050_34843065	0.000876744	UCCCUUU	ENSMUST00000170092.1|Fam168b|ENSMUSG00000037503.6|family with sequence similarity 168, member B 	ENSMUST00000167518.1|Fam168b|ENSMUSG00000037503.6|family with sequence similarity 168, member B 	ENSMUST00000047534.5|Fam168b|ENSMUSG00000037503.6|family with sequence similarity 168, member B
mm10_v2_chr1_+_153652943_153653025	0.000862442	UCCCUUU	ENSMUST00000041776.5|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8
mm10_v2_chr10_-_75517324_75517381	0.000845103	UCCCUUU	ENSMUST00000039796.7|Gucd1|ENSMUSG00000033416.8|guanylyl cyclase domain containing 1
mm10_v2_chr2_-_69586021_69586065	0.000501243	UCCCUUU	ENSMUST00000100051.2|Lrp2|ENSMUSG00000027070.8|low density lipoprotein receptor-related protein 2 	ENSMUST00000092551.4|Lrp2|ENSMUSG00000027070.8|low density lipoprotein receptor-related protein 2 	ENSMUST00000080953.5|Lrp2|ENSMUSG00000027070.8|low density lipoprotein receptor-related protein 2
mm10_v2_chr18_-_46280820_46280850	0.00036627	UCCCUUU	ENSMUST00000025354.3|Pggt1b|ENSMUSG00000024477.3|protein geranylgeranyltransferase type I, beta subunit
mm10_v2_chr15_+_39198244_39198363	0.00030335	UCCCUUU	ENSMUST00000082054.5|Rims2|ENSMUSG00000037386.9|regulating synaptic membrane exocytosis 2 	ENSMUST00000042917.9|Rims2|ENSMUSG00000037386.9|regulating synaptic membrane exocytosis 2
mm10_v2_chr13_-_45002045_45002117	0.000216397	UCCCUUU	ENSMUST00000072329.7|Dtnbp1|ENSMUSG00000057531.7|dystrobrevin binding protein 1 	ENSMUST00000110128.4|Dtnbp1|ENSMUSG00000057531.7|dystrobrevin binding protein 1
