ISMARA results: CCACAGG

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avrg: GFI1 WT vs 36n/n vs KD

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Results for CCACAGG

Z-value: 0.34

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miRNA associated with seed CCACAGG

Name	miRBASE accession
mmu-miR-140-3p.1 miRBase

Activity profile of CCACAGG motif

Sorted Z-values of CCACAGG motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr10_-_117681864 Show fit	0.17	ENSMUST00000064667.9	Rap1b Ensembl NCBI MGI UniProt Show fit	RAS related protein 1b
chr3_-_57559088 Show fit	0.08	ENSMUST00000160959.8	Commd2 Ensembl NCBI MGI UniProt Show fit	COMM domain containing 2
chr18_+_3383230 Show fit	0.07	ENSMUST00000162301.8 ENSMUST00000161317.2	Cul2 Ensembl NCBI MGI UniProt Show fit	cullin 2
chr1_-_131025562 Show fit	0.07	ENSMUST00000016672.11	Mapkapk2 Ensembl NCBI MGI UniProt Show fit	MAP kinase-activated protein kinase 2
chrX_-_141749704 Show fit	0.06	ENSMUST00000041317.3	Ammecr1 Ensembl NCBI MGI UniProt Show fit	Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
chr19_+_53298906 Show fit	0.06	ENSMUST00000003870.15	Mxi1 Ensembl NCBI MGI UniProt Show fit	MAX interactor 1, dimerization protein
chr6_+_108637577 Show fit	0.06	ENSMUST00000032194.11	Bhlhe40 Ensembl NCBI MGI UniProt Show fit	basic helix-loop-helix family, member e40
chr2_+_71617266 Show fit	0.06	ENSMUST00000112101.8 ENSMUST00000028522.10	Itga6 Ensembl NCBI MGI UniProt Show fit	integrin alpha 6
chr3_-_50398027 Show fit	0.06	ENSMUST00000029297.6 ENSMUST00000194462.6	Slc7a11 Ensembl NCBI MGI UniProt Show fit	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
chr6_-_52211882 Show fit	0.05	ENSMUST00000125581.2	Hoxa10 Ensembl NCBI MGI UniProt Show fit	homeobox A10

Showing 1 to 10 of 200 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of CCACAGG

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:2000301	negative regulation of synaptic vesicle exocytosis(GO:2000301)
0.0	0.1	GO:0010157	response to chlorate(GO:0010157)
0.0	0.0	GO:0060574	intestinal epithelial cell maturation(GO:0060574)
0.0	0.0	GO:1900126	negative regulation of hyaluronan biosynthetic process(GO:1900126)

Showing 1 to 4 of 4 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0031800	type 3 metabotropic glutamate receptor binding(GO:0031800)

Showing 1 to 1 of 1 entries