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avrg: GFI1 WT vs 36n/n vs KD

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Results for Hoxc9

Z-value: 0.26

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Transcription factors associated with Hoxc9

Gene Symbol Gene ID Gene Info
ENSMUSG00000036139.7 homeobox C9

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Hoxc9mm39_v1_chr15_+_102885467_102885467-0.838.4e-02Click!

Activity profile of Hoxc9 motif

Sorted Z-values of Hoxc9 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr19_-_10857734 0.22 ENSMUST00000133303.8
transmembrane protein 109
chr13_-_96803216 0.20 ENSMUST00000170287.8
3-hydroxy-3-methylglutaryl-Coenzyme A reductase
chr19_+_24853039 0.19 ENSMUST00000073080.7
predicted gene 10053
chr11_+_3280401 0.15 ENSMUST00000045153.11
phosphoinositide-3-kinase interacting protein 1
chr10_+_96453408 0.13 ENSMUST00000218953.2
BTG anti-proliferation factor 1
chr10_+_43400074 0.11 ENSMUST00000057649.8
ENSMUST00000216543.2
predicted gene 9803
chr5_-_107873883 0.11 ENSMUST00000159263.3
growth factor independent 1 transcription repressor
chr4_-_150087587 0.11 ENSMUST00000084117.13
hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
chr6_-_119365632 0.09 ENSMUST00000169744.8
adiponectin receptor 2
chr9_+_121539395 0.08 ENSMUST00000035113.11
ENSMUST00000215966.2
ENSMUST00000215833.2
ENSMUST00000215104.2
SS18, nBAF chromatin remodeling complex subunit like 2
chr11_-_72106418 0.08 ENSMUST00000021157.9
mediator complex subunit 31
chr2_-_84481058 0.08 ENSMUST00000111670.9
ENSMUST00000111697.9
ENSMUST00000111696.8
ENSMUST00000111678.8
ENSMUST00000111690.8
ENSMUST00000111695.8
ENSMUST00000111677.8
ENSMUST00000111698.8
ENSMUST00000099941.9
ENSMUST00000111676.8
ENSMUST00000111694.8
ENSMUST00000111675.8
ENSMUST00000111689.8
ENSMUST00000111687.8
ENSMUST00000111692.8
ENSMUST00000111685.8
ENSMUST00000111686.8
ENSMUST00000111688.8
ENSMUST00000111693.8
ENSMUST00000111684.8
catenin (cadherin associated protein), delta 1
chr6_-_52190299 0.08 ENSMUST00000128102.4
predicted gene 28308
chrX_+_55655111 0.07 ENSMUST00000144068.8
ENSMUST00000077741.12
ENSMUST00000114784.4
solute carrier family 9 (sodium/hydrogen exchanger), member 6
chr2_-_84480804 0.07 ENSMUST00000066177.10
catenin (cadherin associated protein), delta 1
chr2_-_84481020 0.07 ENSMUST00000067232.10
catenin (cadherin associated protein), delta 1
chr3_+_67799510 0.07 ENSMUST00000063263.5
ENSMUST00000182006.4
IQ motif containing J
Iqcj and Schip1 fusion protein
chr17_+_64203017 0.07 ENSMUST00000000129.14
fer (fms/fps related) protein kinase
chr18_-_57108405 0.07 ENSMUST00000139243.9
ENSMUST00000025488.15
RIKEN cDNA C330018D20 gene
chr17_+_24645615 0.07 ENSMUST00000234304.2
ENSMUST00000024946.7
ENSMUST00000234150.2
enoyl-Coenzyme A delta isomerase 1
chr4_+_118217179 0.06 ENSMUST00000006562.6
hydroxypyruvate isomerase (putative)
chr7_+_51537645 0.06 ENSMUST00000208711.2
growth arrest specific 2
chr10_+_128247598 0.05 ENSMUST00000096386.13
ring finger protein 41
chr3_-_51184730 0.05 ENSMUST00000195432.2
ENSMUST00000091144.11
ENSMUST00000156983.3
E74-like factor 2
chr6_+_134373275 0.05 ENSMUST00000032321.11
BCL2-like 14 (apoptosis facilitator)
chr8_-_23295603 0.05 ENSMUST00000163739.3
ENSMUST00000210656.2
adaptor-related protein complex 3, mu 2 subunit
chr13_+_94219934 0.05 ENSMUST00000156071.2
lipoma HMGIC fusion partner-like 2
chr11_-_79971750 0.05 ENSMUST00000103233.10
ENSMUST00000061283.15
cytokine receptor-like factor 3
chr2_-_84481101 0.05 ENSMUST00000111691.2
catenin (cadherin associated protein), delta 1
chr7_+_130633776 0.04 ENSMUST00000084509.7
ENSMUST00000213064.3
ENSMUST00000208311.4
deleted in malignant brain tumors 1
chr3_-_33898405 0.04 ENSMUST00000029222.8
coiled-coil domain containing 39
chr1_+_85538554 0.03 ENSMUST00000162925.2
Sp140 nuclear body protein
chr9_+_35334878 0.03 ENSMUST00000154652.8
cell adhesion molecule-related/down-regulated by oncogenes
chr8_+_15107646 0.03 ENSMUST00000033842.4
myomesin 2
chr12_-_15866763 0.03 ENSMUST00000020922.8
ENSMUST00000221215.2
ENSMUST00000221518.2
tribbles pseudokinase 2
chr1_+_60948149 0.03 ENSMUST00000027164.9
cytotoxic T-lymphocyte-associated protein 4
chr12_-_8550003 0.03 ENSMUST00000067384.6
ras homolog family member B
chr9_+_53678801 0.03 ENSMUST00000048670.10
solute carrier family 35, member F2
chr5_+_67417908 0.03 ENSMUST00000037918.12
ENSMUST00000162543.8
ENSMUST00000161233.8
ENSMUST00000160352.8
transmembrane protein 33
chr3_-_51184895 0.02 ENSMUST00000108051.8
ENSMUST00000108053.9
E74-like factor 2
chr7_-_4815111 0.02 ENSMUST00000205885.2
ubiquitin-conjugating enzyme E2S
chr16_+_27126239 0.02 ENSMUST00000066852.9
osteocrin
chr10_+_5543769 0.02 ENSMUST00000051809.10
myc target 1
chr1_-_179572765 0.02 ENSMUST00000211943.3
ENSMUST00000131716.4
ENSMUST00000221136.2
kinesin family member 28
chr10_+_119655294 0.02 ENSMUST00000105262.9
ENSMUST00000147454.8
ENSMUST00000138410.8
ENSMUST00000144825.8
ENSMUST00000148954.8
ENSMUST00000144959.8
glutamate receptor interacting protein 1
chr7_-_30312246 0.02 ENSMUST00000006476.6
uroplakin 1A
chr5_+_102916637 0.02 ENSMUST00000112852.8
Rho GTPase activating protein 24
chr13_-_96607722 0.02 ENSMUST00000055607.13
ankyrin repeat and death domain containing 1B
chr8_+_120955195 0.02 ENSMUST00000180448.3
genetic suppressor element 1, coiled-coil protein
chr6_+_54246120 0.02 ENSMUST00000114401.8
chimerin 2
chr10_+_4660119 0.02 ENSMUST00000105588.8
ENSMUST00000105589.2
estrogen receptor 1 (alpha)
chr3_+_66893031 0.02 ENSMUST00000046542.13
ENSMUST00000162693.8
arginine/serine-rich coiled-coil 1
chr1_+_60948307 0.02 ENSMUST00000097720.4
cytotoxic T-lymphocyte-associated protein 4
chr9_-_13245834 0.02 ENSMUST00000110582.4
Jrk-like
chr1_+_187730018 0.01 ENSMUST00000027906.13
estrogen-related receptor gamma
chr2_-_177269992 0.01 ENSMUST00000108945.8
ENSMUST00000108943.2
predicted gene 14406
chr10_+_128247492 0.01 ENSMUST00000171342.3
ring finger protein 41
chr5_-_86437119 0.01 ENSMUST00000196462.2
ENSMUST00000059424.10
transmembrane protease, serine 11c
chr2_-_26406631 0.01 ENSMUST00000132820.2
notch 1
chr10_-_88440996 0.01 ENSMUST00000121629.8
myosin binding protein C, slow-type
chr1_+_187730032 0.01 ENSMUST00000110938.2
estrogen-related receptor gamma
chr3_+_128993568 0.01 ENSMUST00000029657.16
ENSMUST00000106382.11
paired-like homeodomain transcription factor 2
chr7_-_115637970 0.01 ENSMUST00000166877.8
SRY (sex determining region Y)-box 6
chr11_-_101785181 0.01 ENSMUST00000057054.8
mesenchyme homeobox 1
chrX_-_142716085 0.01 ENSMUST00000087313.10
doublecortin
chr10_+_52267702 0.01 ENSMUST00000067085.7
nephrocan
chr18_+_37822865 0.01 ENSMUST00000195112.2
protocadherin gamma subfamily B, 2
chr2_+_174852034 0.01 ENSMUST00000109069.8
ENSMUST00000109070.3
predicted gene 14444
chr8_+_119010458 0.01 ENSMUST00000117160.2
cadherin 13
chr4_-_109059414 0.01 ENSMUST00000160774.8
ENSMUST00000194478.6
ENSMUST00000030288.14
ENSMUST00000162787.9
oxysterol binding protein-like 9
chr10_-_88440869 0.01 ENSMUST00000119185.8
ENSMUST00000238199.2
myosin binding protein C, slow-type
chr2_-_111320501 0.01 ENSMUST00000099616.2
olfactory receptor 1290
chr1_+_58249556 0.01 ENSMUST00000040442.6
aldehyde oxidase 4
chr3_-_110050312 0.01 ENSMUST00000156177.9
netrin G1
chr13_-_96607619 0.01 ENSMUST00000239026.2
ENSMUST00000181613.3
ankyrin repeat and death domain containing 1B
chr9_-_39338444 0.01 ENSMUST00000073895.4
olfactory receptor 952
chr13_+_113346193 0.01 ENSMUST00000038144.9
endothelial cell-specific molecule 1
chr13_+_23433408 0.01 ENSMUST00000091719.2
vomeronasal 1 receptor 223
chr17_-_57307018 0.01 ENSMUST00000002740.3
persephin
chr14_-_50424675 0.01 ENSMUST00000051453.2
olfactory receptor 730
chr3_+_128993527 0.01 ENSMUST00000174661.9
paired-like homeodomain transcription factor 2
chr14_+_53607470 0.00 ENSMUST00000103652.5
T cell receptor alpha variable 14N-3
chr2_-_76700830 0.00 ENSMUST00000138542.2
titin
chr1_-_135934080 0.00 ENSMUST00000166193.9
immunoglobulin-like and fibronectin type III domain containing 1
chr8_-_65489834 0.00 ENSMUST00000142822.4
apelin receptor early endogenous ligand
chr10_+_69761784 0.00 ENSMUST00000181974.8
ENSMUST00000182795.8
ENSMUST00000182437.8
ankyrin 3, epithelial
chr16_-_37205277 0.00 ENSMUST00000114787.8
ENSMUST00000114782.8
ENSMUST00000114775.8
syntaxin binding protein 5-like
chr1_+_66360865 0.00 ENSMUST00000114013.8
microtubule-associated protein 2
chr4_+_151081538 0.00 ENSMUST00000030803.2
urotensin 2
chrX_+_21350783 0.00 ENSMUST00000089188.9
angiotensin II receptor, type 2
chr10_-_61814852 0.00 ENSMUST00000105453.8
ENSMUST00000105452.9
ENSMUST00000105454.3
collagen, type XIII, alpha 1
chr16_-_37205302 0.00 ENSMUST00000114781.8
ENSMUST00000114780.8
syntaxin binding protein 5-like
chr2_+_74552322 0.00 ENSMUST00000047904.4
homeobox D4
chr4_-_91264727 0.00 ENSMUST00000107124.10
ELAV like RNA binding protein 1
chr12_-_113790741 0.00 ENSMUST00000103457.3
ENSMUST00000192877.2
immunoglobulin heavy variable 5-15
chr9_+_62765362 0.00 ENSMUST00000213643.2
ENSMUST00000034777.14
ENSMUST00000163820.3
ENSMUST00000215870.2
ENSMUST00000214633.2
ENSMUST00000215968.2
calmodulin-like 4
chr7_-_103289443 0.00 ENSMUST00000058744.5
olfactory receptor 622
chr14_+_53315909 0.00 ENSMUST00000103608.4
T cell receptor alpha variable 14D-3-DV8
chr4_+_33924632 0.00 ENSMUST00000057188.7
cannabinoid receptor 1 (brain)
chr4_-_91264670 0.00 ENSMUST00000107109.9
ENSMUST00000107111.9
ENSMUST00000107120.8
ELAV like RNA binding protein 1
chr13_-_64237036 0.00 ENSMUST00000222783.2
hydroxysteroid (17-beta) dehydrogenase 3
chr13_-_64237011 0.00 ENSMUST00000166224.8
ENSMUST00000222810.2
hydroxysteroid (17-beta) dehydrogenase 3
chr15_-_48655329 0.00 ENSMUST00000160658.8
ENSMUST00000100670.10
ENSMUST00000162830.8
CUB and Sushi multiple domains 3
chr19_+_22425565 0.00 ENSMUST00000037901.14
transient receptor potential cation channel, subfamily M, member 3
chr2_-_42543069 0.00 ENSMUST00000203080.3
low density lipoprotein-related protein 1B
chr2_-_42542938 0.00 ENSMUST00000204204.2
low density lipoprotein-related protein 1B
chr13_-_64236994 0.00 ENSMUST00000039832.7
hydroxysteroid (17-beta) dehydrogenase 3
chr13_-_25454058 0.00 ENSMUST00000057866.13
neurensin 1
chr18_+_65715351 0.00 ENSMUST00000235669.2
ENSMUST00000183319.8
ENSMUST00000236523.2
ENSMUST00000237886.2
zinc finger protein 532
chrX_-_140257030 0.00 ENSMUST00000101205.3
collagen, type IV, alpha 6
chr12_-_46767619 0.00 ENSMUST00000219886.2
NOVA alternative splicing regulator 1
chr15_-_89263790 0.00 ENSMUST00000238996.2
outer dense fiber of sperm tails 3B
chr13_-_78345932 0.00 ENSMUST00000127137.3
nuclear receptor subfamily 2, group F, member 1
chr4_+_135870808 0.00 ENSMUST00000008016.3
inhibitor of DNA binding 3
chr18_+_65715156 0.00 ENSMUST00000237553.2
ENSMUST00000237712.2
ENSMUST00000182684.8
zinc finger protein 532
chr17_-_29768531 0.00 ENSMUST00000168339.3
ENSMUST00000114683.10
ENSMUST00000234620.2
transmembrane protein 217
chr19_+_22425534 0.00 ENSMUST00000235522.2
ENSMUST00000236372.2
ENSMUST00000238066.2
ENSMUST00000235780.2
ENSMUST00000236804.2
transient receptor potential cation channel, subfamily M, member 3
chr13_-_40891849 0.00 ENSMUST00000223869.2
transcription factor AP-2, alpha
chr7_+_99384352 0.00 ENSMUST00000098264.2
olfactory receptor 520
chr6_-_55109960 0.00 ENSMUST00000003568.15
corticotropin releasing hormone receptor 2
chr2_-_38604503 0.00 ENSMUST00000028084.5
nuclear receptor subfamily 5, group A, member 1
chrX_+_48552803 0.00 ENSMUST00000130558.8
Rho GTPase activating protein 36

Network of associatons between targets according to the STRING database.

First level regulatory network of Hoxc9

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 GO:0060690 epithelial cell differentiation involved in salivary gland development(GO:0060690)
0.0 0.1 GO:0070103 regulation of interleukin-6-mediated signaling pathway(GO:0070103)
0.0 0.1 GO:2000271 positive regulation of fibroblast apoptotic process(GO:2000271)
0.0 0.1 GO:0043553 negative regulation of phosphatidylinositol 3-kinase activity(GO:0043553)
0.0 0.0 GO:0042091 interleukin-10 biosynthetic process(GO:0042091) regulation of interleukin-10 biosynthetic process(GO:0045074)
0.0 0.1 GO:0061042 vascular wound healing(GO:0061042)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 GO:0005915 zonula adherens(GO:0005915)
0.0 0.1 GO:0044308 axonal spine(GO:0044308)
0.0 0.1 GO:0070847 core mediator complex(GO:0070847)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity(GO:0004420) hydroxymethylglutaryl-CoA reductase activity(GO:0042282)
0.0 0.1 GO:0036313 phosphatidylinositol 3-kinase catalytic subunit binding(GO:0036313)
0.0 0.1 GO:0047936 glucose 1-dehydrogenase [NAD(P)] activity(GO:0047936)
0.0 0.1 GO:0097003 adipokinetic hormone receptor activity(GO:0097003)
0.0 0.1 GO:0005128 erythropoietin receptor binding(GO:0005128)
0.0 0.1 GO:0004165 dodecenoyl-CoA delta-isomerase activity(GO:0004165)