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avrg: GFI1 WT vs 36n/n vs KD

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Results for Msx2_Hoxd4

Z-value: 0.84

Motif logo

Transcription factors associated with Msx2_Hoxd4

Gene Symbol Gene ID Gene Info
ENSMUSG00000021469.10 msh homeobox 2
ENSMUSG00000101174.9 homeobox D4

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Msx2mm39_v1_chr13_-_53627110_536271100.992.2e-03Click!
Hoxd4mm39_v1_chr2_+_74557418_74557545-0.523.7e-01Click!

Activity profile of Msx2_Hoxd4 motif

Sorted Z-values of Msx2_Hoxd4 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr13_+_23728222 1.15 ENSMUST00000075558.5
H3 clustered histone 7
chr5_-_62923463 0.99 ENSMUST00000076623.8
ENSMUST00000159470.3
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
chr2_-_104324035 0.77 ENSMUST00000111124.8
homeodomain interacting protein kinase 3
chr5_+_107655487 0.67 ENSMUST00000143074.2
predicted gene 42669
chr7_+_140181182 0.60 ENSMUST00000214180.2
ENSMUST00000211771.2
olfactory receptor 46
chr5_-_84565218 0.54 ENSMUST00000113401.4
Eph receptor A5
chrX_-_7242065 0.45 ENSMUST00000191497.2
ENSMUST00000115744.2
ubiquitin specific peptidase 27, X chromosome
chrM_+_9870 0.45 ENSMUST00000084013.1
mitochondrially encoded NADH dehydrogenase 4L
chr2_+_87404246 0.42 ENSMUST00000213315.2
ENSMUST00000214773.2
olfactory receptor 1129
chr17_-_37523969 0.42 ENSMUST00000060728.7
ENSMUST00000216318.2
olfactory receptor 95
chr16_+_14523696 0.33 ENSMUST00000023356.8
snail family zinc finger 2
chrX_+_158491589 0.33 ENSMUST00000080394.13
SH3-domain kinase binding protein 1
chr2_-_73284262 0.32 ENSMUST00000102679.8
WAS/WASL interacting protein family, member 1
chr14_-_50586329 0.31 ENSMUST00000216634.2
olfactory receptor 735
chr2_-_45000389 0.31 ENSMUST00000201804.4
ENSMUST00000028229.13
ENSMUST00000202187.4
ENSMUST00000153561.6
ENSMUST00000201490.2
zinc finger E-box binding homeobox 2
chr7_+_140261864 0.31 ENSMUST00000214637.3
olfactory receptor 45
chr1_+_171668122 0.30 ENSMUST00000135386.2
CD84 antigen
chr3_+_63988968 0.30 ENSMUST00000029406.6
vomeronasal 2, receptor 1
chr18_+_4920513 0.30 ENSMUST00000126977.8
supervillin
chr15_+_102885467 0.30 ENSMUST00000001706.7
homeobox C9
chr6_-_36787096 0.30 ENSMUST00000201321.2
ENSMUST00000101534.5
pleiotrophin
chr6_+_57180275 0.28 ENSMUST00000226892.2
ENSMUST00000227421.2
vomeronasal 1 receptor 13
chr2_+_83554770 0.28 ENSMUST00000141725.3
integrin alpha V
chr15_+_31224616 0.27 ENSMUST00000186547.7
death-associated protein
chr13_+_22508759 0.27 ENSMUST00000226225.2
ENSMUST00000227017.2
vomeronasal 1 receptor 197
chr2_+_71884943 0.27 ENSMUST00000028525.6
Rap guanine nucleotide exchange factor (GEF) 4
chr2_+_87137925 0.26 ENSMUST00000216396.3
olfactory receptor 1118
chr14_+_8283087 0.26 ENSMUST00000206298.3
ENSMUST00000216079.2
olfactory receptor 720
chr18_+_7905440 0.26 ENSMUST00000170854.2
WW domain containing adaptor with coiled-coil
chr7_-_73187369 0.25 ENSMUST00000172704.6
chromodomain helicase DNA binding protein 2
chr12_-_76224025 0.24 ENSMUST00000101291.11
ENSMUST00000218621.2
ENSMUST00000076634.5
estrogen receptor 2 (beta)
chr7_+_107497109 0.23 ENSMUST00000209670.4
ENSMUST00000216937.3
olfactory receptor 472
chrM_-_14061 0.23 ENSMUST00000082419.1
mitochondrially encoded NADH dehydrogenase 6
chr2_+_88217406 0.23 ENSMUST00000214040.3
olfactory receptor 1178
chr12_+_108145802 0.23 ENSMUST00000221167.2
cyclin K
chr18_+_37453427 0.22 ENSMUST00000078271.4
protocadherin beta 5
chr5_-_102217770 0.22 ENSMUST00000053177.14
ENSMUST00000174698.2
WD repeat and FYVE domain containing 3
chr6_-_119940694 0.22 ENSMUST00000161512.3
WNK lysine deficient protein kinase 1
chr13_-_23302027 0.22 ENSMUST00000228656.2
vomeronasal 1 receptor 217
chr11_-_73742280 0.21 ENSMUST00000213365.2
olfactory receptor 393
chr13_-_23302396 0.21 ENSMUST00000227110.2
vomeronasal 1 receptor 217
chr15_-_36165017 0.21 ENSMUST00000058643.4
F-box protein 43
chr9_+_77959206 0.20 ENSMUST00000024104.9
glial cells missing homolog 1
chr10_-_129530155 0.20 ENSMUST00000204641.3
olfactory receptor 803
chr7_-_139941566 0.19 ENSMUST00000215023.2
ENSMUST00000216027.2
ENSMUST00000210932.3
ENSMUST00000211031.3
olfactory receptor 60
chr6_+_136495818 0.18 ENSMUST00000186577.7
activating transcription factor 7 interacting protein
chr2_-_32976378 0.18 ENSMUST00000049618.9
GTPase activating RANGAP domain-like 3
chr10_-_14593935 0.17 ENSMUST00000020016.5
gap junction protein, epsilon 1
chr13_+_49761506 0.17 ENSMUST00000021822.7
osteoglycin
chr13_+_49697919 0.16 ENSMUST00000177948.2
ENSMUST00000021820.14
asporin
chrM_+_2743 0.16 ENSMUST00000082392.1
mitochondrially encoded NADH dehydrogenase 1
chr2_-_45001141 0.16 ENSMUST00000201969.4
ENSMUST00000201623.4
zinc finger E-box binding homeobox 2
chr14_+_8282925 0.15 ENSMUST00000217642.2
olfactory receptor 720
chr8_-_26609153 0.14 ENSMUST00000037182.14
hook microtubule tethering protein 3
chr5_-_31684036 0.14 ENSMUST00000202421.2
ENSMUST00000201769.4
ENSMUST00000065388.11
SPT7-like, STAGA complex gamma subunit
chr17_-_46638874 0.13 ENSMUST00000047970.14
ATP-binding cassette, sub-family C (CFTR/MRP), member 10
chr2_-_45002902 0.13 ENSMUST00000076836.13
ENSMUST00000176732.8
ENSMUST00000200844.4
zinc finger E-box binding homeobox 2
chr15_+_80861966 0.13 ENSMUST00000139517.9
ENSMUST00000137255.3
ENSMUST00000137004.2
small G protein signaling modulator 3
chr3_+_144283355 0.13 ENSMUST00000151086.3
selenoprotein F
chr4_-_52859227 0.13 ENSMUST00000107670.3
olfactory receptor 273
chr6_-_67468831 0.13 ENSMUST00000118364.2
interleukin 23 receptor
chr1_-_155293141 0.12 ENSMUST00000111775.8
ENSMUST00000111774.2
xenotropic and polytropic retrovirus receptor 1
chr11_-_79421397 0.11 ENSMUST00000103236.4
ENSMUST00000170799.8
ENSMUST00000170422.4
ecotropic viral integration site 2a
ecotropic viral integration site 2
chr10_-_33500583 0.11 ENSMUST00000161692.2
ENSMUST00000160299.2
ENSMUST00000019920.13
clavesin 2
chr4_+_35152056 0.11 ENSMUST00000058595.7
interferon kappa
chr2_+_87436556 0.11 ENSMUST00000213103.3
ENSMUST00000216580.2
olfactory receptor 1130
chr6_+_124281607 0.11 ENSMUST00000032234.5
ENSMUST00000112541.8
CD163 antigen
chr10_+_127256736 0.11 ENSMUST00000064793.13
R3H domain containing 2
chr15_-_43733389 0.11 ENSMUST00000067469.6
transmembrane protein 74
chr3_-_146200870 0.10 ENSMUST00000093951.3
spermatogenesis associated 1
chrX_+_149330371 0.09 ENSMUST00000066337.13
ENSMUST00000112715.2
aminolevulinic acid synthase 2, erythroid
chr6_+_136495784 0.09 ENSMUST00000032335.13
ENSMUST00000185724.7
activating transcription factor 7 interacting protein
chr4_-_24851086 0.09 ENSMUST00000084781.6
ENSMUST00000108218.10
kelch-like 32
chr14_-_36641270 0.09 ENSMUST00000182797.8
coiled-coil serine rich 2
chr1_+_33947250 0.09 ENSMUST00000183034.5
dystonin
chr1_-_156766381 0.08 ENSMUST00000188656.7
Ral GEF with PH domain and SH3 binding motif 2
chr2_-_88519531 0.08 ENSMUST00000213545.2
olfactory receptor 1195
chr6_+_68233361 0.08 ENSMUST00000103320.3
immunoglobulin kappa variable 14-111
chr6_+_149226891 0.08 ENSMUST00000189837.2
retroelement silencing factor 1
chr2_-_86857424 0.08 ENSMUST00000214857.2
ENSMUST00000215972.2
olfactory receptor 1104
chr10_+_127256993 0.08 ENSMUST00000170336.8
R3H domain containing 2
chr17_-_21006419 0.08 ENSMUST00000233605.2
ENSMUST00000232812.2
ENSMUST00000233186.2
ENSMUST00000233164.2
vomeronasal 1 receptor 228
chrX_-_142716200 0.07 ENSMUST00000112851.8
ENSMUST00000112856.3
ENSMUST00000033642.10
doublecortin
chr5_-_53864874 0.07 ENSMUST00000031093.5
cholecystokinin A receptor
chr6_-_87510200 0.07 ENSMUST00000113637.9
ENSMUST00000071024.7
Rho GTPase activating protein 25
chr17_-_29226700 0.07 ENSMUST00000233441.2
serine/threonine kinase 38
chr7_-_120673761 0.07 ENSMUST00000047194.4
immunoglobulin superfamily, member 6
chr7_+_126549692 0.06 ENSMUST00000106335.8
ENSMUST00000146017.3
seizure related 6 homolog like 2
chr1_+_174192688 0.06 ENSMUST00000217962.2
ENSMUST00000220394.2
olfactory receptor 417
chr14_+_50360643 0.06 ENSMUST00000215317.2
olfactory receptor 727
chr7_-_73191484 0.06 ENSMUST00000197642.2
ENSMUST00000026895.14
ENSMUST00000169922.9
chromodomain helicase DNA binding protein 2
chr6_+_29361408 0.06 ENSMUST00000156163.2
calumenin
chr15_+_38869415 0.06 ENSMUST00000179165.9
frizzled class receptor 6
chr7_-_101494472 0.06 ENSMUST00000211566.2
ENSMUST00000094141.7
ENSMUST00000209329.2
folate receptor 2 (fetal)
chr1_-_133849131 0.05 ENSMUST00000048432.6
proline arginine-rich end leucine-rich repeat
chr13_+_118851214 0.05 ENSMUST00000022246.9
fibroblast growth factor 10
chr7_+_122723365 0.05 ENSMUST00000205514.2
ENSMUST00000094053.7
trinucleotide repeat containing 6a
chr7_-_45570828 0.05 ENSMUST00000038876.13
epithelial membrane protein 3
chr5_+_88073438 0.05 ENSMUST00000001667.13
ENSMUST00000113267.8
casein kappa
chr9_-_107648144 0.05 ENSMUST00000183248.3
ENSMUST00000182022.8
ENSMUST00000035199.13
ENSMUST00000182659.8
RNA binding motif protein 5
chr3_-_68911807 0.05 ENSMUST00000154741.8
ENSMUST00000148031.2
intraflagellar transport 80
chr7_-_10011933 0.05 ENSMUST00000227719.2
ENSMUST00000228622.2
ENSMUST00000228086.2
vomeronasal 1 receptor 66
chr4_-_43710231 0.05 ENSMUST00000217544.2
ENSMUST00000107862.3
olfactory receptor 71
chr1_+_45834645 0.05 ENSMUST00000147308.2
WD repeat domain 75
chr1_-_132318039 0.04 ENSMUST00000132435.2
transmembrane and coiled-coil domains 2
chr4_+_19605451 0.04 ENSMUST00000108250.3
predicted gene 12353
chr1_+_128079543 0.04 ENSMUST00000189317.3
R3H domain containing 1
chr17_+_17622934 0.04 ENSMUST00000115576.3
limb and CNS expressed 1
chr2_-_63014622 0.04 ENSMUST00000075052.10
ENSMUST00000112454.8
potassium voltage-gated channel, subfamily H (eag-related), member 7
chr15_+_58004831 0.03 ENSMUST00000226889.2
WDYHV motif containing 1
chr17_-_90395771 0.03 ENSMUST00000197268.5
ENSMUST00000173917.8
neurexin I
chr9_+_74883377 0.03 ENSMUST00000081746.7
family with sequence similarity 214, member A
chr4_-_129015493 0.03 ENSMUST00000135763.2
ENSMUST00000149763.3
ENSMUST00000164649.8
hippocalcin
chr6_+_89860642 0.03 ENSMUST00000226345.2
ENSMUST00000204656.3
ENSMUST00000227456.2
ENSMUST00000227047.2
ENSMUST00000226120.2
ENSMUST00000227888.2
ENSMUST00000228183.2
ENSMUST00000227625.2
vomeronasal 1 receptor 44
chr7_+_140064129 0.03 ENSMUST00000214296.2
ENSMUST00000213715.3
ENSMUST00000217235.2
olfactory receptor 535
chr2_-_59955995 0.02 ENSMUST00000112550.8
bromodomain adjacent to zinc finger domain, 2B
chr6_+_37847721 0.02 ENSMUST00000031859.14
ENSMUST00000120428.8
tripartite motif-containing 24
chr3_+_20011201 0.02 ENSMUST00000091309.12
ENSMUST00000108329.8
ENSMUST00000003714.13
ceruloplasmin
chr18_+_34973605 0.02 ENSMUST00000043484.8
receptor accessory protein 2
chr10_+_129601351 0.02 ENSMUST00000203236.3
olfactory receptor 808
chr7_-_115423934 0.02 ENSMUST00000169129.8
SRY (sex determining region Y)-box 6
chr12_-_113896002 0.02 ENSMUST00000103463.3
immunoglobulin heavy variable 14-1
chr1_-_14380418 0.02 ENSMUST00000027066.13
ENSMUST00000168081.9
EYA transcriptional coactivator and phosphatase 1
chr18_+_9707595 0.02 ENSMUST00000234965.2
collectin sub-family member 12
chr7_-_104250951 0.02 ENSMUST00000216750.2
ENSMUST00000215538.2
olfactory receptor 655
chr6_+_34722887 0.02 ENSMUST00000123823.8
ENSMUST00000136907.8
caldesmon 1
chr2_+_76480606 0.01 ENSMUST00000099986.3
pejvakin
chr19_+_44980565 0.01 ENSMUST00000179305.2
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
chr8_+_26648169 0.01 ENSMUST00000036807.13
ENSMUST00000130231.2
THAP domain containing, apoptosis associated protein 1
chr1_-_14380327 0.01 ENSMUST00000080664.14
EYA transcriptional coactivator and phosphatase 1
chr1_-_156766351 0.01 ENSMUST00000189648.2
Ral GEF with PH domain and SH3 binding motif 2
chr10_+_128139191 0.01 ENSMUST00000005825.8
PAN2 poly(A) specific ribonuclease subunit
chr15_+_6673167 0.01 ENSMUST00000163073.2
FYN binding protein
chr10_+_101994841 0.01 ENSMUST00000020039.13
MGAT4 family, member C
chr6_+_83985684 0.01 ENSMUST00000203803.3
ENSMUST00000204591.3
ENSMUST00000113823.8
ENSMUST00000153860.4
dysferlin
chr11_-_66059330 0.01 ENSMUST00000080665.10
dynein, axonemal, heavy chain 9
chr14_-_56137697 0.01 ENSMUST00000111325.5
short chain dehydrogenase/reductase family 39U, member 1
chr6_-_39702381 0.01 ENSMUST00000002487.15
Braf transforming gene
chr11_+_96183294 0.01 ENSMUST00000173432.3
homeobox B6
chr5_-_72325482 0.01 ENSMUST00000196241.2
ENSMUST00000013693.11
COMM domain containing 8
chr19_-_13074935 0.01 ENSMUST00000214561.3
olfactory receptor 1457
chr10_-_109669053 0.01 ENSMUST00000238286.2
neuron navigator 3
chr19_-_47680528 0.01 ENSMUST00000026045.14
ENSMUST00000086923.6
collagen, type XVII, alpha 1
chr2_-_63014514 0.01 ENSMUST00000112452.2
potassium voltage-gated channel, subfamily H (eag-related), member 7
chr2_-_164013033 0.00 ENSMUST00000045196.4
K+ voltage-gated channel, subfamily S, 1
chr13_+_76115824 0.00 ENSMUST00000022081.3
spermatogenesis associated 9
chr15_-_3333003 0.00 ENSMUST00000165386.2
coiled-coil domain containing 152
chr5_-_121641461 0.00 ENSMUST00000079368.5
a disintegrin and metallopeptidase domain 1b
chr4_-_119349760 0.00 ENSMUST00000049994.8
ribosomal modification protein rimK-like family member A
chr10_+_78353262 0.00 ENSMUST00000204477.5
olfactory receptor 1358
chr5_+_65505657 0.00 ENSMUST00000031096.11
klotho beta
chr1_-_37955569 0.00 ENSMUST00000078307.7
lysozyme G-like 2
chr3_-_126918491 0.00 ENSMUST00000238781.2
ankyrin 2, brain
chr15_-_13173736 0.00 ENSMUST00000036439.6
cadherin 6
chr19_-_12897671 0.00 ENSMUST00000054737.3
olfactory receptor 1448
chr4_-_144291704 0.00 ENSMUST00000105748.2
AADACL4 family member 2

Network of associatons between targets according to the STRING database.

First level regulatory network of Msx2_Hoxd4

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0070563 negative regulation of vitamin D receptor signaling pathway(GO:0070563)
0.1 0.3 GO:0032685 negative regulation of granulocyte macrophage colony-stimulating factor production(GO:0032685)
0.1 0.6 GO:1902748 positive regulation of lens fiber cell differentiation(GO:1902748)
0.1 0.2 GO:0008628 hormone-mediated apoptotic signaling pathway(GO:0008628)
0.1 0.3 GO:1904395 positive regulation of skeletal muscle acetylcholine-gated channel clustering(GO:1904395)
0.1 0.2 GO:0051439 negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle(GO:0051436) regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle(GO:0051439)
0.1 0.2 GO:0035973 aggrephagy(GO:0035973)
0.1 0.3 GO:1904457 positive regulation of neuronal action potential(GO:1904457)
0.1 0.3 GO:0071894 histone H2B conserved C-terminal lysine ubiquitination(GO:0071894)
0.0 0.2 GO:0060800 regulation of cell differentiation involved in embryonic placenta development(GO:0060800)
0.0 0.1 GO:2000536 negative regulation of entry of bacterium into host cell(GO:2000536)
0.0 0.2 GO:0023016 signal transduction by trans-phosphorylation(GO:0023016)
0.0 0.8 GO:0043508 negative regulation of JUN kinase activity(GO:0043508)
0.0 0.5 GO:0071372 cellular response to follicle-stimulating hormone stimulus(GO:0071372)
0.0 0.2 GO:0070171 negative regulation of tooth mineralization(GO:0070171)
0.0 0.2 GO:0044828 negative regulation by host of viral genome replication(GO:0044828)
0.0 0.1 GO:0061033 bronchiole development(GO:0060435) secretion by lung epithelial cell involved in lung growth(GO:0061033)
0.0 0.1 GO:0048227 plasma membrane to endosome transport(GO:0048227)
0.0 0.1 GO:0035880 embryonic nail plate morphogenesis(GO:0035880)
0.0 0.5 GO:0070536 protein K63-linked deubiquitination(GO:0070536)
0.0 0.3 GO:0060218 hematopoietic stem cell differentiation(GO:0060218)
0.0 0.1 GO:0090274 reduction of food intake in response to dietary excess(GO:0002023) positive regulation of somatostatin secretion(GO:0090274)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0002944 cyclin K-CDK12 complex(GO:0002944) cyclin K-CDK13 complex(GO:0002945)
0.1 0.2 GO:0097635 Atg12-Atg5-Atg16 complex(GO:0034274) extrinsic component of autophagosome membrane(GO:0097635)
0.1 0.3 GO:0044316 cone cell pedicle(GO:0044316)
0.0 0.1 GO:0034686 integrin alphav-beta3 complex(GO:0034683) integrin alphav-beta8 complex(GO:0034686)
0.0 0.1 GO:0070695 FHF complex(GO:0070695)
0.0 0.1 GO:0031673 H zone(GO:0031673)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0038052 RNA polymerase II transcription factor activity, estrogen-activated sequence-specific DNA binding(GO:0038052)
0.1 0.3 GO:0035373 chondroitin sulfate proteoglycan binding(GO:0035373)
0.1 0.5 GO:0061578 Lys63-specific deubiquitinase activity(GO:0061578)
0.1 0.5 GO:0005004 GPI-linked ephrin receptor activity(GO:0005004)
0.0 0.2 GO:0003831 beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity(GO:0003831)
0.0 0.1 GO:0003870 5-aminolevulinate synthase activity(GO:0003870) N-succinyltransferase activity(GO:0016749)
0.0 0.1 GO:0000822 inositol hexakisphosphate binding(GO:0000822)
0.0 0.1 GO:0005143 interleukin-12 receptor binding(GO:0005143)
0.0 0.5 GO:0050136 NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136)
0.0 0.1 GO:0019960 C-X3-C chemokine binding(GO:0019960)
0.0 0.2 GO:0019869 chloride channel inhibitor activity(GO:0019869)
0.0 0.6 GO:0070412 R-SMAD binding(GO:0070412)
0.0 0.3 GO:0070513 death domain binding(GO:0070513)
0.0 0.9 GO:0005547 phosphatidylinositol-3,4,5-trisphosphate binding(GO:0005547)
0.0 0.1 GO:0005111 type 2 fibroblast growth factor receptor binding(GO:0005111)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.0 PID ARF6 PATHWAY Arf6 signaling events
0.0 0.3 PID SYNDECAN 3 PATHWAY Syndecan-3-mediated signaling events
0.0 0.5 PID EPHA FWDPATHWAY EPHA forward signaling
0.0 0.2 PID ERB GENOMIC PATHWAY Validated nuclear estrogen receptor beta network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 REACTOME KERATAN SULFATE DEGRADATION Genes involved in Keratan sulfate degradation