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avrg: GFI1 WT vs 36n/n vs KD

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Results for Nkx2-4

Z-value: 0.66

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Transcription factors associated with Nkx2-4

Gene Symbol Gene ID Gene Info
ENSMUSG00000054160.3 NK2 homeobox 4

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Nkx2-4mm39_v1_chr2_-_146927365_1469274060.029.8e-01Click!

Activity profile of Nkx2-4 motif

Sorted Z-values of Nkx2-4 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr4_-_136620376 0.47 ENSMUST00000046332.6
complement component 1, q subcomponent, C chain
chr13_+_63387827 0.45 ENSMUST00000222929.2
aminopeptidase O
chr2_-_157408239 0.36 ENSMUST00000109528.9
ENSMUST00000088494.3
bladder cancer associated protein
chr5_-_120887864 0.35 ENSMUST00000053909.13
ENSMUST00000081491.13
2'-5' oligoadenylate synthetase 2
chr4_-_40279382 0.31 ENSMUST00000108108.3
ENSMUST00000095128.10
NADH:ubiquinone oxidoreductase subunit B6
chrX_+_55493325 0.31 ENSMUST00000079663.7
predicted gene 2174
chr9_+_108437485 0.29 ENSMUST00000081111.14
ENSMUST00000193421.2
inosine monophosphate dehydrogenase 2
chr1_+_16175998 0.27 ENSMUST00000027053.8
retinol dehydrogenase 10 (all-trans)
chr18_+_36431732 0.27 ENSMUST00000210490.3
IgA inducing protein
chr13_+_63387870 0.26 ENSMUST00000159152.3
ENSMUST00000221820.2
aminopeptidase O
chr8_-_79539838 0.26 ENSMUST00000146824.2
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
chr10_+_4561974 0.26 ENSMUST00000105590.8
ENSMUST00000067086.14
estrogen receptor 1 (alpha)
chr2_+_140012560 0.24 ENSMUST00000044825.5
NADH:ubiquinone oxidoreductase complex assembly factor 5
chr11_+_49138278 0.24 ENSMUST00000109194.2
mannoside acetylglucosaminyltransferase 1
chr2_-_34645241 0.24 ENSMUST00000102800.9
GTPase activating protein and VPS9 domains 1
chr8_+_78276020 0.22 ENSMUST00000056237.15
ENSMUST00000118622.2
protein arginine methyltransferase 9
chr7_-_84328553 0.22 ENSMUST00000069537.3
ENSMUST00000207865.2
ENSMUST00000178385.9
ENSMUST00000208782.2
zinc finger, AN1-type domain 6
chr10_+_128067964 0.20 ENSMUST00000125289.8
ENSMUST00000105242.8
timeless circadian clock 1
chr5_-_65090104 0.19 ENSMUST00000059349.6
toll-like receptor 1
chr12_+_33004178 0.18 ENSMUST00000020885.13
synaptophysin-like protein
chr10_+_128067934 0.18 ENSMUST00000055539.11
ENSMUST00000105244.8
ENSMUST00000105243.9
timeless circadian clock 1
chr9_+_4376556 0.18 ENSMUST00000212075.2
Myb/SANT-like DNA-binding domain containing 4 with coiled-coils
chr5_-_137531463 0.17 ENSMUST00000170293.8
guanine nucleotide binding protein (G protein), beta 2
chrX_-_139857424 0.16 ENSMUST00000033805.15
ENSMUST00000112978.2
proteasome (prosome, macropain) 26S subunit, non-ATPase, 10
chr3_-_108469740 0.16 ENSMUST00000090546.6
transmembrane protein 167B
chr1_+_85454323 0.15 ENSMUST00000239236.2
predicted gene 7592
chrX_+_106132840 0.15 ENSMUST00000118666.8
ENSMUST00000053375.4
purinergic receptor P2Y, G-protein coupled 10
chr2_-_112089627 0.14 ENSMUST00000043970.2
NUT midline carcinoma, family member 1
chr5_-_137531413 0.14 ENSMUST00000168746.8
guanine nucleotide binding protein (G protein), beta 2
chr15_+_88703786 0.13 ENSMUST00000024042.5
cysteine-rich with EGF-like domains 2
chr14_+_48683581 0.12 ENSMUST00000227440.2
ENSMUST00000124720.8
ENSMUST00000226422.2
ENSMUST00000226400.2
transmembrane protein 260
chr2_+_29951859 0.12 ENSMUST00000102866.10
SET nuclear oncogene
chr11_-_103588487 0.11 ENSMUST00000107013.3
golgi SNAP receptor complex member 2
chr4_-_129467430 0.11 ENSMUST00000102596.8
lymphocyte protein tyrosine kinase
chr5_+_35156389 0.11 ENSMUST00000114281.8
ENSMUST00000114280.8
regulator of G-protein signaling 12
chr12_-_81468705 0.10 ENSMUST00000085319.4
a disintegrin and metallopeptidase domain 4
chr6_+_123206802 0.10 ENSMUST00000112554.9
ENSMUST00000024118.11
ENSMUST00000117130.8
C-type lectin domain family 4, member n
chr3_-_108469468 0.10 ENSMUST00000106622.3
transmembrane protein 167B
chr14_+_55909816 0.10 ENSMUST00000227178.2
ENSMUST00000227914.2
guanosine monophosphate reductase 2
chr6_-_29164981 0.10 ENSMUST00000007993.16
RNA binding motif protein 28
chr12_+_105996961 0.09 ENSMUST00000220629.2
vaccinia related kinase 1
chr15_+_99568208 0.09 ENSMUST00000023758.9
acid-sensing (proton-gated) ion channel 1
chr8_-_110305672 0.09 ENSMUST00000074898.8
haptoglobin
chr1_+_55170411 0.08 ENSMUST00000027122.14
MOB family member 4, phocein
chr2_-_63014622 0.08 ENSMUST00000075052.10
ENSMUST00000112454.8
potassium voltage-gated channel, subfamily H (eag-related), member 7
chr10_+_87926932 0.08 ENSMUST00000048621.8
pro-melanin-concentrating hormone
chr4_-_133599616 0.07 ENSMUST00000157067.9
ribosomal protein S6 kinase polypeptide 1
chr5_-_23821523 0.07 ENSMUST00000088392.9
serine/arginine-rich protein specific kinase 2
chr1_+_55170390 0.07 ENSMUST00000159311.8
ENSMUST00000162364.8
MOB family member 4, phocein
chr1_+_59669482 0.07 ENSMUST00000190490.2
predicted gene 973
chr5_+_32293145 0.07 ENSMUST00000031017.11
fos-like antigen 2
chr13_+_83723255 0.07 ENSMUST00000199167.5
ENSMUST00000195904.5
myocyte enhancer factor 2C
chr17_-_57501170 0.07 ENSMUST00000005976.8
tumor necrosis factor (ligand) superfamily, member 14
chr19_-_6947076 0.06 ENSMUST00000237074.2
phospholipase C, beta 3
chr1_+_121358778 0.06 ENSMUST00000036025.16
ENSMUST00000112621.2
coiled-coil domain containing 93
chr13_+_35843816 0.06 ENSMUST00000075220.14
chromodomain protein, Y chromosome-like
chr1_-_138547403 0.06 ENSMUST00000027642.5
ENSMUST00000186017.7
NIMA (never in mitosis gene a)-related expressed kinase 7
chr11_+_87483723 0.06 ENSMUST00000119628.8
myotubularin related protein 4
chr3_+_36205166 0.06 ENSMUST00000197653.5
ENSMUST00000205077.2
zinc finger protein 267
chr3_-_129548954 0.05 ENSMUST00000029653.7
epidermal growth factor
chr3_-_108108113 0.05 ENSMUST00000106655.2
ENSMUST00000065664.7
cytochrome b-561 domain containing 1
chr5_+_35156454 0.05 ENSMUST00000114283.8
regulator of G-protein signaling 12
chr12_+_86999366 0.05 ENSMUST00000191463.2
CLOCK interacting protein, circadian
chr19_-_6947112 0.05 ENSMUST00000025912.10
phospholipase C, beta 3
chr8_+_46944000 0.05 ENSMUST00000110372.9
ENSMUST00000130563.2
acyl-CoA synthetase long-chain family member 1
chr9_-_14815228 0.04 ENSMUST00000034409.14
ENSMUST00000117620.8
IZUMO1 receptor, JUNO
chr9_+_38738911 0.03 ENSMUST00000051238.7
ENSMUST00000219798.2
olfactory receptor 923
chr14_+_55909692 0.03 ENSMUST00000002397.7
guanosine monophosphate reductase 2
chr15_+_21111428 0.03 ENSMUST00000075132.8
cadherin 12
chr3_+_88536805 0.03 ENSMUST00000175745.2
rho/rac guanine nucleotide exchange factor (GEF) 2
chr5_+_24890810 0.03 ENSMUST00000068825.8
negative regulator of ubiquitin-like proteins 1
chr6_+_41098273 0.03 ENSMUST00000103270.4
T cell receptor beta, variable 13-2
chr12_+_38830812 0.02 ENSMUST00000160856.8
ets variant 1
chr6_+_41107047 0.02 ENSMUST00000103271.2
T cell receptor beta, variable 13-3
chr11_+_101623836 0.02 ENSMUST00000129741.2
DEAH (Asp-Glu-Ala-His) box polypeptide 8
chr9_-_71803354 0.02 ENSMUST00000184448.8
transcription factor 12
chr6_-_69394425 0.02 ENSMUST00000199160.2
immunoglobulin kappa chain variable 4-61
chr12_-_115083839 0.02 ENSMUST00000103521.3
immunoglobulin heavy variable 1-50
chr2_-_84865831 0.02 ENSMUST00000028465.14
purinergic receptor P2X, ligand-gated ion channel, 3
chr12_+_38831093 0.02 ENSMUST00000161513.9
ets variant 1
chr8_+_46080840 0.02 ENSMUST00000135336.9
sorbin and SH3 domain containing 2
chr6_+_41331039 0.01 ENSMUST00000072103.7
trypsin 10
chr12_-_115299134 0.01 ENSMUST00000195359.6
ENSMUST00000103530.3
immunoglobulin heavy variable V1-59
chr8_+_88925821 0.01 ENSMUST00000066748.10
ENSMUST00000119033.8
ENSMUST00000118952.8
terminal nucleotidyltransferase 4B
chr6_-_68784692 0.01 ENSMUST00000103334.4
immunoglobulin kappa chain variable 4-90
chr2_+_154390808 0.01 ENSMUST00000045116.11
ENSMUST00000109709.4
RIKEN cDNA 1700003F12 gene
chr2_-_147028309 0.01 ENSMUST00000067075.7
NK2 homeobox 2
chr3_+_96604415 0.01 ENSMUST00000107077.4
protein inhibitor of activated STAT 3
chr15_-_76419131 0.01 ENSMUST00000230604.2
transmembrane protein 249
chr3_-_92926364 0.01 ENSMUST00000193944.2
ENSMUST00000029520.9
late cornified envelope 1M
chr6_+_142359099 0.01 ENSMUST00000126521.9
ENSMUST00000211094.2
spexin hormone
chr6_+_68402550 0.01 ENSMUST00000103323.3
immunoglobulin kappa variable 16-104
chr2_-_86809141 0.01 ENSMUST00000094913.6
olfactory receptor 1100
chr19_-_39637489 0.01 ENSMUST00000067328.7
cytochrome P450, family 2, subfamily c, polypeptide 67
chr14_-_52273600 0.01 ENSMUST00000214342.2
olfactory receptor 221
chr18_-_3281727 0.01 ENSMUST00000154705.8
ENSMUST00000151084.8
cAMP responsive element modulator
chr6_+_21986445 0.01 ENSMUST00000115382.8
cadherin-like and PC-esterase domain containing 1
chr1_+_100025486 0.00 ENSMUST00000188735.2
contactin associated protein-like 5B
chr6_+_123206880 0.00 ENSMUST00000205129.2
C-type lectin domain family 4, member n
chrX_-_142716085 0.00 ENSMUST00000087313.10
doublecortin
chr1_-_28819331 0.00 ENSMUST00000059937.5
predicted gene 597
chr17_+_21534225 0.00 ENSMUST00000077301.6
vomeronasal 1 receptor 237
chr18_-_3281089 0.00 ENSMUST00000139537.2
ENSMUST00000124747.8
cAMP responsive element modulator
chr19_-_39729431 0.00 ENSMUST00000099472.4
cytochrome P450, family 2, subfamily c, polypeptide 68
chr17_+_37777099 0.00 ENSMUST00000031086.5
olfactory receptor 109
chr13_-_22403990 0.00 ENSMUST00000057516.2
vomeronasal 1 receptor 193
chr4_+_62443606 0.00 ENSMUST00000062145.2
RIKEN cDNA 4933430I17 gene
chr5_-_137531471 0.00 ENSMUST00000143495.8
ENSMUST00000111020.8
ENSMUST00000111023.8
ENSMUST00000111038.8
guanine nucleotide binding protein (G protein), beta 2
erythropoietin
chr2_-_89127612 0.00 ENSMUST00000099787.2
olfactory receptor 1230
chr7_-_80554807 0.00 ENSMUST00000119428.2
ENSMUST00000026817.11
neuromedin B
chr7_-_132414823 0.00 ENSMUST00000106165.8
family with sequence similarity 53, member B
chr6_+_58242159 0.00 ENSMUST00000228678.2
vomeronasal 1 receptor 28
chr6_+_70332836 0.00 ENSMUST00000103390.3
immunoglobulin kappa variable 8-18
chr14_-_8798841 0.00 ENSMUST00000061045.3
sentan, cilia apical structure protein
chr9_+_19227643 0.00 ENSMUST00000220268.2
olfactory receptor 844
chr14_+_26414422 0.00 ENSMUST00000022433.12
dynein, axonemal, heavy chain 12
chr8_-_40761372 0.00 ENSMUST00000118639.2
fibroblast growth factor 20
chr18_-_3281752 0.00 ENSMUST00000140332.8
ENSMUST00000147138.8
cAMP responsive element modulator
chr17_+_70828649 0.00 ENSMUST00000233283.2
DLG associated protein 1
chr19_-_8196196 0.00 ENSMUST00000113298.9
solute carrier family 22. member 29

Network of associatons between targets according to the STRING database.

First level regulatory network of Nkx2-4

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0030961 peptidyl-arginine hydroxylation(GO:0030961)
0.1 0.4 GO:1904975 response to bleomycin(GO:1904975) cellular response to bleomycin(GO:1904976)
0.1 0.2 GO:0019918 peptidyl-arginine methylation, to symmetrical-dimethyl arginine(GO:0019918)
0.1 0.2 GO:0042495 detection of triacyl bacterial lipopeptide(GO:0042495)
0.1 0.2 GO:0006049 UDP-N-acetylglucosamine catabolic process(GO:0006049)
0.1 0.2 GO:0070682 proteasome regulatory particle assembly(GO:0070682)
0.1 0.5 GO:0045650 negative regulation of macrophage differentiation(GO:0045650)
0.0 0.3 GO:0060523 prostate epithelial cord elongation(GO:0060523)
0.0 0.3 GO:0018377 protein myristoylation(GO:0018377)
0.0 0.1 GO:0046038 GMP catabolic process(GO:0046038)
0.0 0.3 GO:0006177 GMP biosynthetic process(GO:0006177)
0.0 0.3 GO:0060449 bud elongation involved in lung branching(GO:0060449)
0.0 0.2 GO:0038032 termination of G-protein coupled receptor signaling pathway(GO:0038032)
0.0 0.1 GO:2000295 regulation of hydrogen peroxide catabolic process(GO:2000295)
0.0 0.1 GO:0072355 histone H3-T3 phosphorylation(GO:0072355)
0.0 0.1 GO:0008588 release of cytoplasmic sequestered NF-kappaB(GO:0008588)
0.0 0.1 GO:0032227 negative regulation of synaptic transmission, dopaminergic(GO:0032227)
0.0 0.1 GO:0031161 phosphatidylinositol catabolic process(GO:0031161)
0.0 0.1 GO:0050915 sensory perception of sour taste(GO:0050915)
0.0 0.1 GO:0035063 nuclear speck organization(GO:0035063)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0035354 Toll-like receptor 1-Toll-like receptor 2 protein complex(GO:0035354)
0.0 0.1 GO:1902560 GMP reductase complex(GO:1902560)
0.0 0.2 GO:0031314 extrinsic component of mitochondrial inner membrane(GO:0031314)
0.0 0.3 GO:0097550 transcriptional preinitiation complex(GO:0097550)
0.0 0.3 GO:0005688 U6 snRNP(GO:0005688)
0.0 0.1 GO:0031838 haptoglobin-hemoglobin complex(GO:0031838)
0.0 0.2 GO:0008540 proteasome regulatory particle, base subcomplex(GO:0008540)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0031798 type 1 metabotropic glutamate receptor binding(GO:0031798) RNA polymerase II transcription factor activity, estrogen-activated sequence-specific DNA binding(GO:0038052)
0.1 0.2 GO:0042497 triacyl lipopeptide binding(GO:0042497)
0.1 0.2 GO:0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity(GO:0003827)
0.0 0.3 GO:0003938 IMP dehydrogenase activity(GO:0003938)
0.0 0.2 GO:0035243 protein-arginine omega-N symmetric methyltransferase activity(GO:0035243)
0.0 0.1 GO:0003920 GMP reductase activity(GO:0003920) oxidoreductase activity, acting on NAD(P)H, nitrogenous group as acceptor(GO:0016657)
0.0 0.3 GO:0052650 NADP-retinol dehydrogenase activity(GO:0052650)
0.0 0.1 GO:0035175 histone kinase activity (H3-S10 specific)(GO:0035175)
0.0 0.3 GO:0001730 2'-5'-oligoadenylate synthetase activity(GO:0001730)
0.0 0.1 GO:0042610 CD8 receptor binding(GO:0042610)
0.0 0.1 GO:0030492 hemoglobin binding(GO:0030492)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.4 PID CIRCADIAN PATHWAY Circadian rhythm pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 REACTOME CREATION OF C4 AND C2 ACTIVATORS Genes involved in Creation of C4 and C2 activators
0.0 0.2 REACTOME BETA DEFENSINS Genes involved in Beta defensins
0.0 0.3 REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS Genes involved in Purine ribonucleoside monophosphate biosynthesis
0.0 0.3 REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE Genes involved in mRNA Decay by 5' to 3' Exoribonuclease
0.0 0.4 REACTOME G BETA GAMMA SIGNALLING THROUGH PLC BETA Genes involved in G beta:gamma signalling through PLC beta
0.0 0.1 REACTOME TRANSLOCATION OF ZAP 70 TO IMMUNOLOGICAL SYNAPSE Genes involved in Translocation of ZAP-70 to Immunological synapse